@jbrowse/bandage-core 10.2.7 → 10.3.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (190) hide show
  1. package/dist/alleleProjection/projectAlleles.js +8 -4
  2. package/dist/anchoredNodes.js +2 -1
  3. package/dist/bubbleSpreads.js +2 -2
  4. package/dist/bubbles/bubbleHalos.js +10 -11
  5. package/dist/bubbles/bubblesFromGraph.js +8 -3
  6. package/dist/bubbles/classifyBubble.js +9 -6
  7. package/dist/bubbles/popBubble.js +7 -5
  8. package/dist/bubbles/superbubbles.js +18 -14
  9. package/dist/chunks/{chunk-RAKOB6IV.js → chunk-234NFZS4.js} +8 -6
  10. package/dist/chunks/{chunk-A4PFFC4Q.js → chunk-2XEQR54X.js} +60 -102
  11. package/dist/chunks/{chunk-6JEWNXCQ.js → chunk-34BOZKIE.js} +0 -2
  12. package/dist/chunks/{chunk-RVS2QCOX.js → chunk-3GLG3ZLE.js} +2 -11
  13. package/dist/chunks/{chunk-PUG7LXDF.js → chunk-3PZSBNLI.js} +4 -1
  14. package/dist/chunks/{chunk-KBEP7VYK.js → chunk-3VCKBSML.js} +4 -4
  15. package/dist/chunks/{chunk-BPLIXMH7.js → chunk-4XWZNPQ2.js} +14 -0
  16. package/dist/chunks/{chunk-LKW2TP4N.js → chunk-5YILQTHE.js} +18 -16
  17. package/dist/chunks/{chunk-B6IW3IRE.js → chunk-65ILXEIN.js} +14 -15
  18. package/dist/chunks/{chunk-4DRQTBBE.js → chunk-6EOB6ANX.js} +1 -1
  19. package/dist/chunks/{chunk-QBHPHLAQ.js → chunk-7JGLJK44.js} +41 -36
  20. package/dist/chunks/{chunk-T2PCSAFY.js → chunk-7XR26JST.js} +2 -2
  21. package/dist/chunks/{chunk-URZ3CH2R.js → chunk-A4JDEUAI.js} +1 -1
  22. package/dist/chunks/{chunk-JLSJMCDJ.js → chunk-A54O52XZ.js} +3 -3
  23. package/dist/chunks/chunk-A55OZVYX.js +327 -0
  24. package/dist/chunks/{chunk-CWFNEKST.js → chunk-A7H753BA.js} +3 -3
  25. package/dist/chunks/{chunk-VV6KGJ7M.js → chunk-AMX4OQAW.js} +18 -27
  26. package/dist/chunks/{chunk-RPRHR56C.js → chunk-BS6HPYCZ.js} +3 -3
  27. package/dist/chunks/chunk-BSOZW3FC.js +30 -0
  28. package/dist/chunks/{chunk-CU6P5RUG.js → chunk-BVYR7IFN.js} +22 -16
  29. package/dist/chunks/{chunk-XXT2JCAC.js → chunk-BX4AUMZE.js} +11 -13
  30. package/dist/chunks/{chunk-N73TI3VG.js → chunk-BZFOFC4D.js} +6 -9
  31. package/dist/chunks/{chunk-4ETPXDO6.js → chunk-CGFPFBT2.js} +1 -1
  32. package/dist/chunks/{chunk-24WITXQY.js → chunk-CGMSKIEO.js} +9 -25
  33. package/dist/chunks/{chunk-IGVV37VI.js → chunk-CKUVEHSS.js} +3 -3
  34. package/dist/chunks/{chunk-JBCZIBFC.js → chunk-CRCD3ODN.js} +0 -1
  35. package/dist/chunks/{chunk-OIV2GBAJ.js → chunk-DBLV7PGG.js} +27 -17
  36. package/dist/chunks/{chunk-JA2HJIYS.js → chunk-E4ZM4OOJ.js} +3 -5
  37. package/dist/chunks/{chunk-ABUIN5AK.js → chunk-EHXBZ5JZ.js} +29 -24
  38. package/dist/chunks/{chunk-QLWI2PZ3.js → chunk-EJRJAAN7.js} +24 -21
  39. package/dist/chunks/{chunk-Q7LYHGGQ.js → chunk-GIHTHYXY.js} +5 -4
  40. package/dist/chunks/{chunk-L3O7AWLI.js → chunk-GJLZ2MKE.js} +2 -2
  41. package/dist/chunks/{chunk-LOEA5IHZ.js → chunk-GJU6BJJA.js} +8 -8
  42. package/dist/chunks/{chunk-XL472HHD.js → chunk-GQZVR5DW.js} +12 -7
  43. package/dist/chunks/{chunk-UVBGRJQX.js → chunk-HKYXWZQS.js} +1 -1
  44. package/dist/chunks/chunk-HMXCN6PG.js +17 -0
  45. package/dist/chunks/{chunk-WSIFAZU7.js → chunk-HNWJ4B7S.js} +12 -13
  46. package/dist/chunks/chunk-HOAIOEI7.js +18 -0
  47. package/dist/chunks/{chunk-XMW266WS.js → chunk-HSVFCA2J.js} +18 -20
  48. package/dist/chunks/{chunk-3XSM4OZU.js → chunk-IYALCKNB.js} +5 -5
  49. package/dist/chunks/{chunk-QXUEF3AJ.js → chunk-KWHWNOTY.js} +22 -17
  50. package/dist/chunks/{chunk-M6LK4GII.js → chunk-LGJBB5BP.js} +8 -9
  51. package/dist/chunks/{chunk-VQWHMWLF.js → chunk-M5NPD55W.js} +18 -14
  52. package/dist/chunks/{chunk-TKIJ5535.js → chunk-MD5VPXXT.js} +6 -6
  53. package/dist/chunks/{chunk-HK5Y2YWV.js → chunk-MYDHU2UV.js} +6 -11
  54. package/dist/chunks/{chunk-TZFWUT2C.js → chunk-MYLAJDKB.js} +2 -2
  55. package/dist/chunks/{chunk-4HWM3FNK.js → chunk-OMUPUB4J.js} +39 -56
  56. package/dist/chunks/{chunk-PTABFYQ7.js → chunk-PFRQBCGC.js} +49 -60
  57. package/dist/chunks/{chunk-T6V4KI2L.js → chunk-PPDE4IVT.js} +1 -1
  58. package/dist/chunks/{chunk-KC7T5RWG.js → chunk-PSCSZSVK.js} +9 -16
  59. package/dist/chunks/{chunk-CG35S2S2.js → chunk-PTQPTDZH.js} +1 -1
  60. package/dist/chunks/{chunk-L2HDM2R3.js → chunk-QQCOVMMT.js} +7 -7
  61. package/dist/chunks/{chunk-CQHUZHET.js → chunk-RFG42VIO.js} +46 -30
  62. package/dist/chunks/{chunk-FYQWPEEY.js → chunk-RJWPJCIB.js} +5 -11
  63. package/dist/chunks/{chunk-AR4BUBMU.js → chunk-RWKP7UO4.js} +34 -35
  64. package/dist/chunks/{chunk-WBSWROE6.js → chunk-SHKGYGM4.js} +14 -18
  65. package/dist/chunks/{chunk-2CMYNW3E.js → chunk-SI3BB4DO.js} +1 -1
  66. package/dist/chunks/{chunk-DY3JCAMX.js → chunk-SOMZGDVS.js} +7 -16
  67. package/dist/chunks/{chunk-EFQLEGWM.js → chunk-SZHQK6GL.js} +7 -8
  68. package/dist/chunks/{chunk-5GMFEPWR.js → chunk-TCOLHD7N.js} +16 -28
  69. package/dist/chunks/{chunk-XV4P5KEQ.js → chunk-TGUFT6KK.js} +6 -3
  70. package/dist/chunks/{chunk-CM6LO6OC.js → chunk-UAFATXYA.js} +10 -14
  71. package/dist/chunks/{chunk-7SRWJLSC.js → chunk-UBQSRCWR.js} +11 -8
  72. package/dist/chunks/{chunk-RUCH6ZFL.js → chunk-V4YML3GR.js} +2 -1
  73. package/dist/chunks/{chunk-VQC7KELB.js → chunk-V7J6U4XC.js} +11 -3
  74. package/dist/chunks/{chunk-ES2N6V56.js → chunk-VX656OAZ.js} +6 -11
  75. package/dist/chunks/chunk-WA5WNP6V.js +37 -0
  76. package/dist/chunks/{chunk-EQ2NIFRH.js → chunk-WJ4TIAVA.js} +1 -1
  77. package/dist/chunks/{chunk-A7CFWFQS.js → chunk-WONB6LMC.js} +1 -1
  78. package/dist/chunks/{chunk-23YFB5BB.js → chunk-XUT4HXVE.js} +29 -13
  79. package/dist/chunks/{chunk-G45YY72K.js → chunk-Z6XZWPXK.js} +17 -25
  80. package/dist/chunks/{chunk-XI3ZUTWF.js → chunk-ZNJ4JAPT.js} +14 -20
  81. package/dist/chunks/{chunk-AUFAPUO4.js → chunk-ZPBEUOBM.js} +3 -1
  82. package/dist/chunks/{chunk-RAEABQNW.js → chunk-ZPZ7GNBT.js} +1 -0
  83. package/dist/cli/figure.js +59 -56
  84. package/dist/cli/fold.js +19 -17
  85. package/dist/deletionEdges.js +5 -7
  86. package/dist/facetGrid.js +2 -1
  87. package/dist/figure.js +45 -42
  88. package/dist/figureData.js +48 -44
  89. package/dist/figureScene.js +34 -29
  90. package/dist/figureSettings.js +19 -17
  91. package/dist/foldVariants.js +5 -3
  92. package/dist/gbzCut.js +12 -7
  93. package/dist/gbzJoin.js +2 -1
  94. package/dist/gbzWindow.js +11 -6
  95. package/dist/genes/genePins.js +6 -4
  96. package/dist/gfa/gfaConverter.js +7 -5
  97. package/dist/gfa/gfaTables.js +2 -1
  98. package/dist/gfa/graphTables.js +3 -3
  99. package/dist/graphLabels.js +8 -5
  100. package/dist/index.js +88 -85
  101. package/dist/labelLayout.js +12 -9
  102. package/dist/layout/anchoredLayout.js +8 -5
  103. package/dist/layout/drawnScale.js +1 -5
  104. package/dist/layout/forceCache.js +19 -17
  105. package/dist/layout/mergeRuns.js +5 -3
  106. package/dist/layout/orderedLayout.js +5 -2
  107. package/dist/layout/orientToReference.js +3 -2
  108. package/dist/layout/placeOffReference.js +7 -4
  109. package/dist/layout/referenceSeeds.js +6 -4
  110. package/dist/layout/sampleRowLayout.js +8 -5
  111. package/dist/layout/trimToWindow.js +6 -4
  112. package/dist/layout/tubeMapLayout.js +17 -19
  113. package/dist/layout/walkRowDraw.js +18 -17
  114. package/dist/layout/walkRowLayout.js +10 -6
  115. package/dist/layout/walkRows.js +9 -5
  116. package/dist/layout/walkStrip.js +21 -18
  117. package/dist/layoutModes.js +23 -20
  118. package/dist/nodeWidths.js +1 -3
  119. package/dist/pansn.js +5 -1
  120. package/dist/pathAnchoring.js +6 -4
  121. package/dist/pathColors.js +12 -9
  122. package/dist/pathVisits.js +3 -1
  123. package/dist/pipeline.js +18 -16
  124. package/dist/reference.js +5 -3
  125. package/dist/referenceRampCss.js +9 -17
  126. package/dist/referenceSpan.js +4 -2
  127. package/dist/referenceStrip.js +18 -14
  128. package/dist/renderer/Canvas2DRenderer.js +1 -1
  129. package/dist/renderer/GeometryBuilder.js +19 -14
  130. package/dist/renderer/svgCanvas.js +1 -1
  131. package/dist/tubeMap/axis.js +11 -6
  132. package/dist/tubeMap/bundle.js +16 -12
  133. package/dist/tubeMap/coarsen.js +20 -345
  134. package/dist/tubeMap/deviations.js +53 -23
  135. package/dist/tubeMap/draw.js +11 -8
  136. package/dist/tubeMap/frame.js +3 -2
  137. package/dist/tubeMap/genes.js +10 -7
  138. package/dist/tubeMap/mismatches.js +1 -1
  139. package/dist/tubeMap/nodeColors.js +18 -14
  140. package/dist/tubeMap/reads.js +1 -1
  141. package/dist/tubeMap/warp.js +2 -1
  142. package/dist/types/alleleProjection/projectAlleles.d.ts +1 -4
  143. package/dist/types/bubbles/bubbleHalos.d.ts +0 -2
  144. package/dist/types/bubbles/bubblesFromGraph.d.ts +6 -4
  145. package/dist/types/bubbles/classifyBubble.d.ts +2 -1
  146. package/dist/types/deletionEdges.d.ts +0 -8
  147. package/dist/types/figureScene.d.ts +17 -7
  148. package/dist/types/figureSettings.d.ts +2 -0
  149. package/dist/types/gbzCut.d.ts +4 -0
  150. package/dist/types/gbzWindow.d.ts +1 -0
  151. package/dist/types/gfa-core/gfaParser.d.ts +1 -1
  152. package/dist/types/graphLabels.d.ts +2 -1
  153. package/dist/types/layout/drawnScale.d.ts +0 -2
  154. package/dist/types/layout/referenceSeeds.d.ts +2 -1
  155. package/dist/types/layout/tubeMapLayout.d.ts +0 -7
  156. package/dist/types/layout/walkRowDraw.d.ts +0 -1
  157. package/dist/types/layout/walkRowLayout.d.ts +1 -0
  158. package/dist/types/layout/walkRows.d.ts +1 -0
  159. package/dist/types/nodeWidths.d.ts +0 -1
  160. package/dist/types/pansn.d.ts +9 -0
  161. package/dist/types/pathVisits.d.ts +6 -0
  162. package/dist/types/referenceRampCss.d.ts +4 -0
  163. package/dist/types/renderer/Canvas2DRenderer.d.ts +1 -0
  164. package/dist/types/renderer/GeometryBuilder.d.ts +3 -2
  165. package/dist/types/tubeMap/axis.d.ts +3 -1
  166. package/dist/types/tubeMap/coarsen.d.ts +3 -1
  167. package/dist/types/tubeMap/deviations.d.ts +2 -1
  168. package/dist/types/tubeMap/mismatches.d.ts +0 -1
  169. package/dist/types/tubeMap/warp.d.ts +2 -1
  170. package/dist/types/util/SpatialIndex.d.ts +1 -1
  171. package/dist/types/util/geometry.d.ts +4 -0
  172. package/dist/types/util/groups.d.ts +3 -0
  173. package/dist/types/util/hitDetection.d.ts +2 -2
  174. package/dist/types/util/partitionPoint.d.ts +1 -0
  175. package/dist/types/util/weakMemo.d.ts +1 -0
  176. package/dist/types/version.d.ts +1 -1
  177. package/dist/util/SpatialIndex.js +8 -5
  178. package/dist/util/edgeCurves.js +7 -4
  179. package/dist/util/geometry.js +3 -1
  180. package/dist/util/groups.js +10 -0
  181. package/dist/util/hitDetection.js +9 -6
  182. package/dist/util/partitionPoint.js +6 -0
  183. package/dist/util/weakMemo.js +6 -0
  184. package/dist/version.js +1 -1
  185. package/dist/viewport.js +19 -17
  186. package/dist/walkEncoding.js +18 -14
  187. package/dist/walkHighlight.js +19 -15
  188. package/dist/walkKey.js +9 -6
  189. package/package.json +2 -2
  190. package/dist/chunks/chunk-ZY2AFL4Y.js +0 -43
package/dist/layout/tubeMapLayout.js CHANGED
@@ -1,35 +1,33 @@
1
1
  import {
2
- boxGraph,
3
2
  hasTubeMapBackbone,
4
3
  hasTubeMapPaths,
5
- mergedRuns,
6
4
  pathSteps,
7
5
  tubeMapLayout,
8
6
  tubeMapReferenceLayout,
9
- tubeMapTracks,
10
- tubeWidth
11
- } from "../chunks/chunk-XI3ZUTWF.js";
12
- import "../chunks/chunk-CWFNEKST.js";
7
+ tubeMapTracks
8
+ } from "../chunks/chunk-ZNJ4JAPT.js";
9
+ import "../chunks/chunk-A7H753BA.js";
13
10
  import "../chunks/chunk-C44YRP5F.js";
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- import "../chunks/chunk-3XSM4OZU.js";
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- import "../chunks/chunk-M6LK4GII.js";
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- import "../chunks/chunk-RAEABQNW.js";
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- import "../chunks/chunk-BPLIXMH7.js";
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- import "../chunks/chunk-PTABFYQ7.js";
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+ import "../chunks/chunk-5YILQTHE.js";
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+ import "../chunks/chunk-IYALCKNB.js";
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+ import "../chunks/chunk-LGJBB5BP.js";
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+ import "../chunks/chunk-ZPZ7GNBT.js";
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+ import "../chunks/chunk-PFRQBCGC.js";
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+ import "../chunks/chunk-HMXCN6PG.js";
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  import "../chunks/chunk-AB35TJST.js";
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- import "../chunks/chunk-N73TI3VG.js";
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- import "../chunks/chunk-24WITXQY.js";
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- import "../chunks/chunk-7SRWJLSC.js";
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+ import "../chunks/chunk-BZFOFC4D.js";
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+ import "../chunks/chunk-CGMSKIEO.js";
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+ import "../chunks/chunk-UBQSRCWR.js";
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  import "../chunks/chunk-CPMHA4W5.js";
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- import "../chunks/chunk-FYQWPEEY.js";
22
+ import "../chunks/chunk-BSOZW3FC.js";
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+ import "../chunks/chunk-RJWPJCIB.js";
24
+ import "../chunks/chunk-HOAIOEI7.js";
25
+ import "../chunks/chunk-4XWZNPQ2.js";
25
26
  export {
26
- boxGraph,
27
27
  hasTubeMapBackbone,
28
28
  hasTubeMapPaths,
29
- mergedRuns,
30
29
  pathSteps,
31
30
  tubeMapLayout,
32
31
  tubeMapReferenceLayout,
33
- tubeMapTracks,
34
- tubeWidth
32
+ tubeMapTracks
35
33
  };
package/dist/layout/walkRowDraw.js CHANGED
@@ -14,7 +14,6 @@ import {
14
14
  callTickInk,
15
15
  coalesceRuns,
16
16
  genesOnRow,
17
- kb,
18
17
  placeRowGenes,
19
18
  readoutPlacement,
20
19
  rowGeneBoxes,
@@ -26,25 +25,28 @@ import {
26
25
  walkRowsKey,
27
26
  walkRowsKeyTree,
28
27
  walkRowsTree
29
- } from "../chunks/chunk-EFQLEGWM.js";
30
- import "../chunks/chunk-XL472HHD.js";
28
+ } from "../chunks/chunk-SZHQK6GL.js";
31
29
  import "../chunks/chunk-H2H4Y3TV.js";
32
- import "../chunks/chunk-A4PFFC4Q.js";
30
+ import "../chunks/chunk-2XEQR54X.js";
33
31
  import "../chunks/chunk-G2FD7S3C.js";
34
- import "../chunks/chunk-ZY2AFL4Y.js";
35
- import "../chunks/chunk-3XSM4OZU.js";
36
- import "../chunks/chunk-JBCZIBFC.js";
37
- import "../chunks/chunk-M6LK4GII.js";
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- import "../chunks/chunk-RAEABQNW.js";
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- import "../chunks/chunk-ES2N6V56.js";
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- import "../chunks/chunk-BPLIXMH7.js";
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- import "../chunks/chunk-PTABFYQ7.js";
32
+ import "../chunks/chunk-GQZVR5DW.js";
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+ import "../chunks/chunk-WA5WNP6V.js";
34
+ import "../chunks/chunk-IYALCKNB.js";
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+ import "../chunks/chunk-CRCD3ODN.js";
36
+ import "../chunks/chunk-LGJBB5BP.js";
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+ import "../chunks/chunk-VX656OAZ.js";
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+ import "../chunks/chunk-ZPZ7GNBT.js";
39
+ import "../chunks/chunk-PFRQBCGC.js";
40
+ import "../chunks/chunk-HMXCN6PG.js";
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41
  import "../chunks/chunk-AB35TJST.js";
43
- import "../chunks/chunk-N73TI3VG.js";
44
- import "../chunks/chunk-24WITXQY.js";
45
- import "../chunks/chunk-7SRWJLSC.js";
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+ import "../chunks/chunk-BZFOFC4D.js";
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+ import "../chunks/chunk-CGMSKIEO.js";
44
+ import "../chunks/chunk-UBQSRCWR.js";
46
45
  import "../chunks/chunk-CPMHA4W5.js";
47
- import "../chunks/chunk-FYQWPEEY.js";
46
+ import "../chunks/chunk-BSOZW3FC.js";
47
+ import "../chunks/chunk-RJWPJCIB.js";
48
+ import "../chunks/chunk-HOAIOEI7.js";
49
+ import "../chunks/chunk-4XWZNPQ2.js";
48
50
  export {
49
51
  BAR_PX,
50
52
  CALL_TICK,
@@ -61,7 +63,6 @@ export {
61
63
  callTickInk,
62
64
  coalesceRuns,
63
65
  genesOnRow,
64
- kb,
65
66
  placeRowGenes,
66
67
  readoutPlacement,
67
68
  rowGeneBoxes,
package/dist/layout/walkRowLayout.js CHANGED
@@ -1,17 +1,21 @@
1
1
  import {
2
2
  READOUT_ROOM,
3
+ longestBar,
3
4
  walkRowLabels,
4
5
  walkRowLayout,
5
6
  walkRowsExtent
6
- } from "../chunks/chunk-L2HDM2R3.js";
7
- import "../chunks/chunk-LKW2TP4N.js";
8
- import "../chunks/chunk-M6LK4GII.js";
9
- import "../chunks/chunk-RAEABQNW.js";
10
- import "../chunks/chunk-BPLIXMH7.js";
7
+ } from "../chunks/chunk-QQCOVMMT.js";
8
+ import "../chunks/chunk-5YILQTHE.js";
9
+ import "../chunks/chunk-LGJBB5BP.js";
10
+ import "../chunks/chunk-ZPZ7GNBT.js";
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11
  import "../chunks/chunk-CPMHA4W5.js";
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- import "../chunks/chunk-FYQWPEEY.js";
12
+ import "../chunks/chunk-BSOZW3FC.js";
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+ import "../chunks/chunk-RJWPJCIB.js";
14
+ import "../chunks/chunk-HOAIOEI7.js";
15
+ import "../chunks/chunk-4XWZNPQ2.js";
13
16
  export {
14
17
  READOUT_ROOM,
18
+ longestBar,
15
19
  walkRowLabels,
16
20
  walkRowLayout,
17
21
  walkRowsExtent
package/dist/layout/walkRows.js CHANGED
@@ -1,12 +1,16 @@
1
1
  import {
2
2
  filterSamples,
3
+ referenceWalkName,
3
4
  walkRows
4
- } from "../chunks/chunk-LKW2TP4N.js";
5
- import "../chunks/chunk-M6LK4GII.js";
6
- import "../chunks/chunk-RAEABQNW.js";
7
- import "../chunks/chunk-BPLIXMH7.js";
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- import "../chunks/chunk-FYQWPEEY.js";
5
+ } from "../chunks/chunk-5YILQTHE.js";
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+ import "../chunks/chunk-LGJBB5BP.js";
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+ import "../chunks/chunk-ZPZ7GNBT.js";
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+ import "../chunks/chunk-BSOZW3FC.js";
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+ import "../chunks/chunk-RJWPJCIB.js";
10
+ import "../chunks/chunk-HOAIOEI7.js";
11
+ import "../chunks/chunk-4XWZNPQ2.js";
9
12
  export {
10
13
  filterSamples,
14
+ referenceWalkName,
11
15
  walkRows
12
16
  };
package/dist/layout/walkStrip.js CHANGED
@@ -9,30 +9,33 @@ import {
9
9
  walkStripApplies,
10
10
  walkStripFrame,
11
11
  walkStripLabelsTree
12
- } from "../chunks/chunk-WBSWROE6.js";
12
+ } from "../chunks/chunk-SHKGYGM4.js";
13
13
  import {
14
14
  LABELLED_ROW_PX
15
- } from "../chunks/chunk-EFQLEGWM.js";
16
- import "../chunks/chunk-XL472HHD.js";
15
+ } from "../chunks/chunk-SZHQK6GL.js";
17
16
  import "../chunks/chunk-H2H4Y3TV.js";
18
- import "../chunks/chunk-A4PFFC4Q.js";
17
+ import "../chunks/chunk-2XEQR54X.js";
19
18
  import "../chunks/chunk-G2FD7S3C.js";
20
- import "../chunks/chunk-ZY2AFL4Y.js";
21
- import "../chunks/chunk-L2HDM2R3.js";
22
- import "../chunks/chunk-LKW2TP4N.js";
23
- import "../chunks/chunk-3XSM4OZU.js";
24
- import "../chunks/chunk-JBCZIBFC.js";
25
- import "../chunks/chunk-M6LK4GII.js";
26
- import "../chunks/chunk-RAEABQNW.js";
27
- import "../chunks/chunk-ES2N6V56.js";
28
- import "../chunks/chunk-BPLIXMH7.js";
29
- import "../chunks/chunk-PTABFYQ7.js";
19
+ import "../chunks/chunk-GQZVR5DW.js";
20
+ import "../chunks/chunk-WA5WNP6V.js";
21
+ import "../chunks/chunk-QQCOVMMT.js";
22
+ import "../chunks/chunk-5YILQTHE.js";
23
+ import "../chunks/chunk-IYALCKNB.js";
24
+ import "../chunks/chunk-CRCD3ODN.js";
25
+ import "../chunks/chunk-LGJBB5BP.js";
26
+ import "../chunks/chunk-VX656OAZ.js";
27
+ import "../chunks/chunk-ZPZ7GNBT.js";
28
+ import "../chunks/chunk-PFRQBCGC.js";
29
+ import "../chunks/chunk-HMXCN6PG.js";
30
30
  import "../chunks/chunk-AB35TJST.js";
31
- import "../chunks/chunk-N73TI3VG.js";
32
- import "../chunks/chunk-24WITXQY.js";
33
- import "../chunks/chunk-7SRWJLSC.js";
31
+ import "../chunks/chunk-BZFOFC4D.js";
32
+ import "../chunks/chunk-CGMSKIEO.js";
33
+ import "../chunks/chunk-UBQSRCWR.js";
34
34
  import "../chunks/chunk-CPMHA4W5.js";
35
- import "../chunks/chunk-FYQWPEEY.js";
35
+ import "../chunks/chunk-BSOZW3FC.js";
36
+ import "../chunks/chunk-RJWPJCIB.js";
37
+ import "../chunks/chunk-HOAIOEI7.js";
38
+ import "../chunks/chunk-4XWZNPQ2.js";
36
39
  export {
37
40
  LABELLED_ROW_PX,
38
41
  WALK_STRIP_CEILING_PX,
package/dist/layoutModes.js CHANGED
@@ -4,29 +4,32 @@ import {
4
4
  LAYOUT_MODE_VALUES,
5
5
  layoutModeByValue,
6
6
  modeUsesLayoutEngine
7
- } from "./chunks/chunk-TKIJ5535.js";
8
- import "./chunks/chunk-LOEA5IHZ.js";
9
- import "./chunks/chunk-XI3ZUTWF.js";
10
- import "./chunks/chunk-CWFNEKST.js";
11
- import "./chunks/chunk-L3O7AWLI.js";
12
- import "./chunks/chunk-TZFWUT2C.js";
7
+ } from "./chunks/chunk-MD5VPXXT.js";
8
+ import "./chunks/chunk-GJU6BJJA.js";
9
+ import "./chunks/chunk-ZNJ4JAPT.js";
10
+ import "./chunks/chunk-A7H753BA.js";
11
+ import "./chunks/chunk-GJLZ2MKE.js";
12
+ import "./chunks/chunk-MYLAJDKB.js";
13
13
  import "./chunks/chunk-C44YRP5F.js";
14
- import "./chunks/chunk-CM6LO6OC.js";
15
- import "./chunks/chunk-RVS2QCOX.js";
16
- import "./chunks/chunk-L2HDM2R3.js";
17
- import "./chunks/chunk-LKW2TP4N.js";
18
- import "./chunks/chunk-3XSM4OZU.js";
19
- import "./chunks/chunk-M6LK4GII.js";
20
- import "./chunks/chunk-RAEABQNW.js";
21
- import "./chunks/chunk-ES2N6V56.js";
22
- import "./chunks/chunk-BPLIXMH7.js";
23
- import "./chunks/chunk-PTABFYQ7.js";
14
+ import "./chunks/chunk-UAFATXYA.js";
15
+ import "./chunks/chunk-3GLG3ZLE.js";
16
+ import "./chunks/chunk-QQCOVMMT.js";
17
+ import "./chunks/chunk-5YILQTHE.js";
18
+ import "./chunks/chunk-IYALCKNB.js";
19
+ import "./chunks/chunk-LGJBB5BP.js";
20
+ import "./chunks/chunk-VX656OAZ.js";
21
+ import "./chunks/chunk-ZPZ7GNBT.js";
22
+ import "./chunks/chunk-PFRQBCGC.js";
23
+ import "./chunks/chunk-HMXCN6PG.js";
24
24
  import "./chunks/chunk-AB35TJST.js";
25
- import "./chunks/chunk-N73TI3VG.js";
26
- import "./chunks/chunk-24WITXQY.js";
27
- import "./chunks/chunk-7SRWJLSC.js";
25
+ import "./chunks/chunk-BZFOFC4D.js";
26
+ import "./chunks/chunk-CGMSKIEO.js";
27
+ import "./chunks/chunk-UBQSRCWR.js";
28
28
  import "./chunks/chunk-CPMHA4W5.js";
29
- import "./chunks/chunk-FYQWPEEY.js";
29
+ import "./chunks/chunk-BSOZW3FC.js";
30
+ import "./chunks/chunk-RJWPJCIB.js";
31
+ import "./chunks/chunk-HOAIOEI7.js";
32
+ import "./chunks/chunk-4XWZNPQ2.js";
30
33
  export {
31
34
  FORCE_LAYOUT_LABEL,
32
35
  LAYOUT_MODES,
package/dist/nodeWidths.js CHANGED
@@ -1,14 +1,12 @@
1
1
  import {
2
2
  NODE_WIDTHS,
3
- depthWidthFactor,
4
3
  maxNodeWidthPx,
5
4
  meanDepth,
6
5
  nodeInk,
7
6
  nodeWidthPx
8
- } from "./chunks/chunk-JBCZIBFC.js";
7
+ } from "./chunks/chunk-CRCD3ODN.js";
9
8
  export {
10
9
  NODE_WIDTHS,
11
- depthWidthFactor,
12
10
  maxNodeWidthPx,
13
11
  meanDepth,
14
12
  nodeInk,
package/dist/pansn.js CHANGED
@@ -2,17 +2,21 @@ import {
2
2
  assemblyByPanSNPrefix,
3
3
  isGenericSample,
4
4
  panSNContig,
5
+ panSNFields,
5
6
  panSNHaplotype,
6
7
  panSNMatchesPrefix,
7
8
  panSNSample,
9
+ parsePanSN,
8
10
  resolvePanSNPrefix
9
- } from "./chunks/chunk-BPLIXMH7.js";
11
+ } from "./chunks/chunk-4XWZNPQ2.js";
10
12
  export {
11
13
  assemblyByPanSNPrefix,
12
14
  isGenericSample,
13
15
  panSNContig,
16
+ panSNFields,
14
17
  panSNHaplotype,
15
18
  panSNMatchesPrefix,
16
19
  panSNSample,
20
+ parsePanSN,
17
21
  resolvePanSNPrefix
18
22
  };
package/dist/pathAnchoring.js CHANGED
@@ -5,10 +5,12 @@ import {
5
5
  pathOrigin,
6
6
  surveyPaths,
7
7
  trimOrigins
8
- } from "./chunks/chunk-M6LK4GII.js";
9
- import "./chunks/chunk-RAEABQNW.js";
10
- import "./chunks/chunk-BPLIXMH7.js";
11
- import "./chunks/chunk-FYQWPEEY.js";
8
+ } from "./chunks/chunk-LGJBB5BP.js";
9
+ import "./chunks/chunk-ZPZ7GNBT.js";
10
+ import "./chunks/chunk-BSOZW3FC.js";
11
+ import "./chunks/chunk-RJWPJCIB.js";
12
+ import "./chunks/chunk-HOAIOEI7.js";
13
+ import "./chunks/chunk-4XWZNPQ2.js";
12
14
  export {
13
15
  anchorFromPaths,
14
16
  anchorGraph,
package/dist/pathColors.js CHANGED
@@ -9,17 +9,20 @@ import {
9
9
  pathHueAt,
10
10
  pathLegend,
11
11
  walkLabelsOf
12
- } from "./chunks/chunk-3XSM4OZU.js";
13
- import "./chunks/chunk-M6LK4GII.js";
14
- import "./chunks/chunk-RAEABQNW.js";
15
- import "./chunks/chunk-BPLIXMH7.js";
16
- import "./chunks/chunk-PTABFYQ7.js";
12
+ } from "./chunks/chunk-IYALCKNB.js";
13
+ import "./chunks/chunk-LGJBB5BP.js";
14
+ import "./chunks/chunk-ZPZ7GNBT.js";
15
+ import "./chunks/chunk-PFRQBCGC.js";
16
+ import "./chunks/chunk-HMXCN6PG.js";
17
17
  import "./chunks/chunk-AB35TJST.js";
18
- import "./chunks/chunk-N73TI3VG.js";
19
- import "./chunks/chunk-24WITXQY.js";
20
- import "./chunks/chunk-7SRWJLSC.js";
18
+ import "./chunks/chunk-BZFOFC4D.js";
19
+ import "./chunks/chunk-CGMSKIEO.js";
20
+ import "./chunks/chunk-UBQSRCWR.js";
21
21
  import "./chunks/chunk-CPMHA4W5.js";
22
- import "./chunks/chunk-FYQWPEEY.js";
22
+ import "./chunks/chunk-BSOZW3FC.js";
23
+ import "./chunks/chunk-RJWPJCIB.js";
24
+ import "./chunks/chunk-HOAIOEI7.js";
25
+ import "./chunks/chunk-4XWZNPQ2.js";
23
26
  export {
24
27
  MAX_PATH_COLORS,
25
28
  PATH_LIGHTNESS,
package/dist/pathVisits.js CHANGED
@@ -1,8 +1,10 @@
1
1
  import {
2
+ Column,
2
3
  PathVisits,
3
4
  PathVisitsBuilder
4
- } from "./chunks/chunk-RAEABQNW.js";
5
+ } from "./chunks/chunk-ZPZ7GNBT.js";
5
6
  export {
7
+ Column,
6
8
  PathVisits,
7
9
  PathVisitsBuilder
8
10
  };
package/dist/pipeline.js CHANGED
@@ -11,27 +11,29 @@ import {
11
11
  forceLayout,
12
12
  layoutExtent,
13
13
  loadGraph
14
- } from "./chunks/chunk-QXUEF3AJ.js";
15
- import "./chunks/chunk-PUG7LXDF.js";
16
- import "./chunks/chunk-IGVV37VI.js";
14
+ } from "./chunks/chunk-KWHWNOTY.js";
15
+ import "./chunks/chunk-3PZSBNLI.js";
16
+ import "./chunks/chunk-CKUVEHSS.js";
17
17
  import "./chunks/chunk-OPPVSPEF.js";
18
18
  import "./chunks/chunk-VPE4AYP7.js";
19
- import "./chunks/chunk-AR4BUBMU.js";
19
+ import "./chunks/chunk-RWKP7UO4.js";
20
20
  import "./chunks/chunk-QYBZZI5H.js";
21
21
  import "./chunks/chunk-5I3K4R2G.js";
22
- import "./chunks/chunk-OIV2GBAJ.js";
23
- import "./chunks/chunk-M6LK4GII.js";
24
- import "./chunks/chunk-RAEABQNW.js";
25
- import "./chunks/chunk-ES2N6V56.js";
26
- import "./chunks/chunk-G45YY72K.js";
27
- import "./chunks/chunk-BPLIXMH7.js";
28
- import "./chunks/chunk-N73TI3VG.js";
29
- import "./chunks/chunk-UVBGRJQX.js";
30
- import "./chunks/chunk-6JEWNXCQ.js";
31
- import "./chunks/chunk-24WITXQY.js";
32
- import "./chunks/chunk-7SRWJLSC.js";
22
+ import "./chunks/chunk-DBLV7PGG.js";
23
+ import "./chunks/chunk-LGJBB5BP.js";
24
+ import "./chunks/chunk-VX656OAZ.js";
25
+ import "./chunks/chunk-Z6XZWPXK.js";
26
+ import "./chunks/chunk-ZPZ7GNBT.js";
27
+ import "./chunks/chunk-BZFOFC4D.js";
28
+ import "./chunks/chunk-HKYXWZQS.js";
29
+ import "./chunks/chunk-34BOZKIE.js";
30
+ import "./chunks/chunk-CGMSKIEO.js";
31
+ import "./chunks/chunk-UBQSRCWR.js";
33
32
  import "./chunks/chunk-CPMHA4W5.js";
34
- import "./chunks/chunk-FYQWPEEY.js";
33
+ import "./chunks/chunk-BSOZW3FC.js";
34
+ import "./chunks/chunk-RJWPJCIB.js";
35
+ import "./chunks/chunk-HOAIOEI7.js";
36
+ import "./chunks/chunk-4XWZNPQ2.js";
35
37
  export {
36
38
  ENGINE_DEFAULTS,
37
39
  FIT_PADDING,
package/dist/reference.js CHANGED
@@ -8,9 +8,11 @@ import {
8
8
  refNameBinding,
9
9
  referenceLabel,
10
10
  wellKnownSample
11
- } from "./chunks/chunk-RAKOB6IV.js";
12
- import "./chunks/chunk-BPLIXMH7.js";
13
- import "./chunks/chunk-FYQWPEEY.js";
11
+ } from "./chunks/chunk-234NFZS4.js";
12
+ import "./chunks/chunk-BSOZW3FC.js";
13
+ import "./chunks/chunk-RJWPJCIB.js";
14
+ import "./chunks/chunk-HOAIOEI7.js";
15
+ import "./chunks/chunk-4XWZNPQ2.js";
14
16
  export {
15
17
  WELL_KNOWN_SAMPLES,
16
18
  assemblyWalk,
package/dist/referenceRampCss.js CHANGED
@@ -1,30 +1,22 @@
1
1
  import {
2
2
  RAMP_GRADIENT_CSS,
3
3
  RAMP_GRADIENT_STOPS,
4
+ REFERENCE_RAMP_LIGHTNESS,
5
+ REFERENCE_RAMP_MAX_HUE,
6
+ REFERENCE_RAMP_SATURATION,
4
7
  rampHue,
8
+ rampHueAt,
5
9
  rampHueCss,
6
10
  rampStops
7
- } from "./chunks/chunk-XL472HHD.js";
8
- import "./chunks/chunk-A4PFFC4Q.js";
9
- import "./chunks/chunk-G2FD7S3C.js";
10
- import "./chunks/chunk-ZY2AFL4Y.js";
11
- import "./chunks/chunk-3XSM4OZU.js";
12
- import "./chunks/chunk-JBCZIBFC.js";
13
- import "./chunks/chunk-M6LK4GII.js";
14
- import "./chunks/chunk-RAEABQNW.js";
15
- import "./chunks/chunk-ES2N6V56.js";
16
- import "./chunks/chunk-BPLIXMH7.js";
17
- import "./chunks/chunk-PTABFYQ7.js";
18
- import "./chunks/chunk-AB35TJST.js";
19
- import "./chunks/chunk-N73TI3VG.js";
20
- import "./chunks/chunk-24WITXQY.js";
21
- import "./chunks/chunk-7SRWJLSC.js";
22
- import "./chunks/chunk-CPMHA4W5.js";
23
- import "./chunks/chunk-FYQWPEEY.js";
11
+ } from "./chunks/chunk-GQZVR5DW.js";
24
12
  export {
25
13
  RAMP_GRADIENT_CSS,
26
14
  RAMP_GRADIENT_STOPS,
15
+ REFERENCE_RAMP_LIGHTNESS,
16
+ REFERENCE_RAMP_MAX_HUE,
17
+ REFERENCE_RAMP_SATURATION,
27
18
  rampHue,
19
+ rampHueAt,
28
20
  rampHueCss,
29
21
  rampStops
30
22
  };
package/dist/referenceSpan.js CHANGED
@@ -2,8 +2,10 @@ import {
2
2
  buildNeighbors,
3
3
  nodeReferenceSpan,
4
4
  referenceMidpoints
5
- } from "./chunks/chunk-ES2N6V56.js";
6
- import "./chunks/chunk-FYQWPEEY.js";
5
+ } from "./chunks/chunk-VX656OAZ.js";
6
+ import "./chunks/chunk-BSOZW3FC.js";
7
+ import "./chunks/chunk-RJWPJCIB.js";
8
+ import "./chunks/chunk-HOAIOEI7.js";
7
9
  export {
8
10
  buildNeighbors,
9
11
  nodeReferenceSpan,
package/dist/referenceStrip.js CHANGED
@@ -7,23 +7,27 @@ import {
7
7
  stripBlockAt,
8
8
  stripOverhang,
9
9
  stripPixels
10
- } from "./chunks/chunk-JLSJMCDJ.js";
11
- import "./chunks/chunk-A4PFFC4Q.js";
10
+ } from "./chunks/chunk-A54O52XZ.js";
11
+ import "./chunks/chunk-2XEQR54X.js";
12
12
  import "./chunks/chunk-G2FD7S3C.js";
13
- import "./chunks/chunk-ZY2AFL4Y.js";
14
- import "./chunks/chunk-3XSM4OZU.js";
15
- import "./chunks/chunk-JBCZIBFC.js";
16
- import "./chunks/chunk-M6LK4GII.js";
17
- import "./chunks/chunk-RAEABQNW.js";
18
- import "./chunks/chunk-ES2N6V56.js";
19
- import "./chunks/chunk-BPLIXMH7.js";
20
- import "./chunks/chunk-PTABFYQ7.js";
13
+ import "./chunks/chunk-GQZVR5DW.js";
14
+ import "./chunks/chunk-WA5WNP6V.js";
15
+ import "./chunks/chunk-IYALCKNB.js";
16
+ import "./chunks/chunk-CRCD3ODN.js";
17
+ import "./chunks/chunk-LGJBB5BP.js";
18
+ import "./chunks/chunk-VX656OAZ.js";
19
+ import "./chunks/chunk-ZPZ7GNBT.js";
20
+ import "./chunks/chunk-PFRQBCGC.js";
21
+ import "./chunks/chunk-HMXCN6PG.js";
21
22
  import "./chunks/chunk-AB35TJST.js";
22
- import "./chunks/chunk-N73TI3VG.js";
23
- import "./chunks/chunk-24WITXQY.js";
24
- import "./chunks/chunk-7SRWJLSC.js";
23
+ import "./chunks/chunk-BZFOFC4D.js";
24
+ import "./chunks/chunk-CGMSKIEO.js";
25
+ import "./chunks/chunk-UBQSRCWR.js";
25
26
  import "./chunks/chunk-CPMHA4W5.js";
26
- import "./chunks/chunk-FYQWPEEY.js";
27
+ import "./chunks/chunk-BSOZW3FC.js";
28
+ import "./chunks/chunk-RJWPJCIB.js";
29
+ import "./chunks/chunk-HOAIOEI7.js";
30
+ import "./chunks/chunk-4XWZNPQ2.js";
27
31
  export {
28
32
  REFERENCE_STRIP_PX,
29
33
  REFERENCE_STRIP_ZONE_PX,
package/dist/renderer/Canvas2DRenderer.js CHANGED
@@ -1,7 +1,7 @@
1
1
  import {
2
2
  Canvas2DRenderer,
3
3
  arrowheadOutline
4
- } from "../chunks/chunk-QLWI2PZ3.js";
4
+ } from "../chunks/chunk-EJRJAAN7.js";
5
5
  import "../chunks/chunk-RBCE2OQH.js";
6
6
  import "../chunks/chunk-G2FD7S3C.js";
7
7
  export {
package/dist/renderer/GeometryBuilder.js CHANGED
@@ -4,29 +4,34 @@ import {
4
4
  LIFT_BACKDROP_CSS,
5
5
  REFERENCE_RAMP_ALT_COLOR,
6
6
  REFERENCE_RAMP_ALT_CSS,
7
- REFERENCE_RAMP_MAX_HUE,
8
7
  buildGeometry,
9
8
  computeColorSchemeRange,
10
9
  computeReferenceRamp,
11
10
  endTangent,
12
11
  getNodeColor,
13
12
  hslToRgb
14
- } from "../chunks/chunk-A4PFFC4Q.js";
13
+ } from "../chunks/chunk-2XEQR54X.js";
15
14
  import "../chunks/chunk-G2FD7S3C.js";
16
- import "../chunks/chunk-ZY2AFL4Y.js";
17
- import "../chunks/chunk-3XSM4OZU.js";
18
- import "../chunks/chunk-JBCZIBFC.js";
19
- import "../chunks/chunk-M6LK4GII.js";
20
- import "../chunks/chunk-RAEABQNW.js";
21
- import "../chunks/chunk-ES2N6V56.js";
22
- import "../chunks/chunk-BPLIXMH7.js";
23
- import "../chunks/chunk-PTABFYQ7.js";
15
+ import {
16
+ REFERENCE_RAMP_MAX_HUE
17
+ } from "../chunks/chunk-GQZVR5DW.js";
18
+ import "../chunks/chunk-WA5WNP6V.js";
19
+ import "../chunks/chunk-IYALCKNB.js";
20
+ import "../chunks/chunk-CRCD3ODN.js";
21
+ import "../chunks/chunk-LGJBB5BP.js";
22
+ import "../chunks/chunk-VX656OAZ.js";
23
+ import "../chunks/chunk-ZPZ7GNBT.js";
24
+ import "../chunks/chunk-PFRQBCGC.js";
25
+ import "../chunks/chunk-HMXCN6PG.js";
24
26
  import "../chunks/chunk-AB35TJST.js";
25
- import "../chunks/chunk-N73TI3VG.js";
26
- import "../chunks/chunk-24WITXQY.js";
27
- import "../chunks/chunk-7SRWJLSC.js";
27
+ import "../chunks/chunk-BZFOFC4D.js";
28
+ import "../chunks/chunk-CGMSKIEO.js";
29
+ import "../chunks/chunk-UBQSRCWR.js";
28
30
  import "../chunks/chunk-CPMHA4W5.js";
29
- import "../chunks/chunk-FYQWPEEY.js";
31
+ import "../chunks/chunk-BSOZW3FC.js";
32
+ import "../chunks/chunk-RJWPJCIB.js";
33
+ import "../chunks/chunk-HOAIOEI7.js";
34
+ import "../chunks/chunk-4XWZNPQ2.js";
30
35
  export {
31
36
  FADED_ALPHA,
32
37
  LIFT_BACKDROP_COLOR,
package/dist/renderer/svgCanvas.js CHANGED
@@ -1,6 +1,6 @@
1
1
  import {
2
2
  svgCanvas
3
- } from "../chunks/chunk-RUCH6ZFL.js";
3
+ } from "../chunks/chunk-V4YML3GR.js";
4
4
  export {
5
5
  svgCanvas
6
6
  };
package/dist/tubeMap/axis.js CHANGED
@@ -1,4 +1,5 @@
1
1
  import {
2
+ boxX,
2
3
  drawTubeMapRuler,
3
4
  referenceBoxes,
4
5
  rulerBoxes,
@@ -6,15 +7,19 @@ import {
6
7
  rulerMarks,
7
8
  tubeSpan,
8
9
  tubeX
9
- } from "../chunks/chunk-XMW266WS.js";
10
- import "../chunks/chunk-PTABFYQ7.js";
10
+ } from "../chunks/chunk-HSVFCA2J.js";
11
+ import "../chunks/chunk-PFRQBCGC.js";
12
+ import "../chunks/chunk-HMXCN6PG.js";
11
13
  import "../chunks/chunk-AB35TJST.js";
12
- import "../chunks/chunk-N73TI3VG.js";
13
- import "../chunks/chunk-24WITXQY.js";
14
- import "../chunks/chunk-7SRWJLSC.js";
14
+ import "../chunks/chunk-BZFOFC4D.js";
15
+ import "../chunks/chunk-CGMSKIEO.js";
16
+ import "../chunks/chunk-UBQSRCWR.js";
15
17
  import "../chunks/chunk-CPMHA4W5.js";
16
- import "../chunks/chunk-FYQWPEEY.js";
18
+ import "../chunks/chunk-BSOZW3FC.js";
19
+ import "../chunks/chunk-RJWPJCIB.js";
20
+ import "../chunks/chunk-HOAIOEI7.js";
17
21
  export {
22
+ boxX,
18
23
  drawTubeMapRuler,
19
24
  referenceBoxes,
20
25
  rulerBoxes,