@jbrowse/bandage-core 10.2.2 → 10.2.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (137) hide show
  1. package/README.md +6 -7
  2. package/dist/bubbles/bubbleHalos.js +7 -3
  3. package/dist/bubbles/bubblesFromGraph.js +4 -2
  4. package/dist/bubbles/classifyBubble.js +10 -5
  5. package/dist/bubbles/superbubbles.js +10 -6
  6. package/dist/chunks/{chunk-N6FECAXP.js → chunk-24WITXQY.js} +17 -8
  7. package/dist/chunks/{chunk-XTCNEKO5.js → chunk-2QLLQJ72.js} +15 -13
  8. package/dist/chunks/{chunk-ASSNZXCF.js → chunk-3AOGOCCQ.js} +44 -103
  9. package/dist/chunks/{chunk-TWRLC3KK.js → chunk-3XSM4OZU.js} +1 -1
  10. package/dist/chunks/{chunk-WEDZ76AK.js → chunk-4DRQTBBE.js} +1 -1
  11. package/dist/chunks/{chunk-2LQ5BWT7.js → chunk-4ETPXDO6.js} +1 -1
  12. package/dist/chunks/{chunk-FP4H7SFT.js → chunk-4HWM3FNK.js} +2 -2
  13. package/dist/chunks/{chunk-C7MZJSPT.js → chunk-54POIBVC.js} +2 -8
  14. package/dist/chunks/{chunk-PKFMP65V.js → chunk-5GMFEPWR.js} +1 -1
  15. package/dist/chunks/{chunk-CDLPYR5O.js → chunk-5I3K4R2G.js} +7 -6
  16. package/dist/chunks/{chunk-TICYLD5F.js → chunk-7CC7N3XC.js} +35 -78
  17. package/dist/chunks/{chunk-2CVHXFK7.js → chunk-7SRWJLSC.js} +19 -22
  18. package/dist/chunks/{chunk-SBMJNRTV.js → chunk-A4PFFC4Q.js} +37 -27
  19. package/dist/chunks/{chunk-IW6CYVX2.js → chunk-AR4BUBMU.js} +6 -1
  20. package/dist/chunks/{chunk-IUDJKOLB.js → chunk-B6IW3IRE.js} +15 -33
  21. package/dist/chunks/{chunk-JUIJI7RC.js → chunk-BAETMD3J.js} +9 -4
  22. package/dist/chunks/{chunk-L5WF4ZPS.js → chunk-BS4UZ44I.js} +1 -1
  23. package/dist/chunks/{chunk-HNQPEMYE.js → chunk-CM6LO6OC.js} +0 -1
  24. package/dist/chunks/{chunk-CLOP7UVD.js → chunk-CQHUZHET.js} +11 -8
  25. package/dist/chunks/{chunk-R456ME6J.js → chunk-CU6P5RUG.js} +17 -6
  26. package/dist/chunks/chunk-D5D36ZF6.js +107 -0
  27. package/dist/chunks/{chunk-AFP3NWSL.js → chunk-DY3JCAMX.js} +1 -1
  28. package/dist/chunks/{chunk-NRV7R36Q.js → chunk-EFQLEGWM.js} +3 -3
  29. package/dist/chunks/{chunk-BXEPA4KS.js → chunk-G6UIYQZR.js} +5 -2
  30. package/dist/chunks/{chunk-NNODIW4U.js → chunk-H2H4Y3TV.js} +1 -0
  31. package/dist/chunks/{chunk-MVFDSFV2.js → chunk-HNCXR2VS.js} +1 -1
  32. package/dist/chunks/{chunk-EYK7DJZV.js → chunk-J5FWKGOY.js} +1 -1
  33. package/dist/chunks/{chunk-PBENCR5L.js → chunk-JBCZIBFC.js} +0 -2
  34. package/dist/chunks/{chunk-EHUBJDDB.js → chunk-JFY5PWQC.js} +5 -3
  35. package/dist/chunks/{chunk-5BGP5Z64.js → chunk-JLSJMCDJ.js} +1 -1
  36. package/dist/chunks/{chunk-DT2GGH4D.js → chunk-JMABOQWL.js} +2 -6
  37. package/dist/chunks/{chunk-3S3YVOJ7.js → chunk-JSUCGZ6K.js} +1 -1
  38. package/dist/chunks/{chunk-MLSWIMZO.js → chunk-KBEP7VYK.js} +2 -2
  39. package/dist/chunks/{chunk-TAMCZHLW.js → chunk-N73TI3VG.js} +2 -2
  40. package/dist/chunks/chunk-O4EGE27I.js +10 -0
  41. package/dist/chunks/{chunk-3ZZSX5HN.js → chunk-PTABFYQ7.js} +10 -6
  42. package/dist/chunks/{chunk-WBCOREDZ.js → chunk-QLWI2PZ3.js} +16 -7
  43. package/dist/chunks/chunk-RBCE2OQH.js +32 -0
  44. package/dist/chunks/{chunk-BUBZ32IC.js → chunk-RPRHR56C.js} +4 -8
  45. package/dist/chunks/{chunk-47DYCZOK.js → chunk-RUCH6ZFL.js} +4 -0
  46. package/dist/chunks/{chunk-GNTTI6LA.js → chunk-T2PCSAFY.js} +1 -1
  47. package/dist/chunks/{chunk-XKWD2RY3.js → chunk-URZ3CH2R.js} +3 -10
  48. package/dist/chunks/{chunk-ALDGONEI.js → chunk-VQC7KELB.js} +1 -1
  49. package/dist/chunks/{chunk-FLFBYSJO.js → chunk-VQWHMWLF.js} +5 -1
  50. package/dist/chunks/{chunk-4R6QNG23.js → chunk-WL6ZKUVC.js} +3 -3
  51. package/dist/chunks/{chunk-CRTD2SBP.js → chunk-WZNPX7Q6.js} +6 -2
  52. package/dist/chunks/{chunk-FNGIQF43.js → chunk-XA5A27CS.js} +6 -14
  53. package/dist/chunks/{chunk-DK5P2YOL.js → chunk-XI3ZUTWF.js} +2 -2
  54. package/dist/chunks/{chunk-ZIUKZUPJ.js → chunk-XL472HHD.js} +1 -1
  55. package/dist/chunks/{chunk-BPRXQ2SS.js → chunk-XMW266WS.js} +1 -1
  56. package/dist/chunks/{chunk-DRG4236Y.js → chunk-YN6FDIBT.js} +2 -2
  57. package/dist/chunks/{chunk-WFB5TXRA.js → chunk-ZY2AFL4Y.js} +13 -31
  58. package/dist/cli/decodeText.js +6 -0
  59. package/dist/cli/figure.js +59 -60
  60. package/dist/cli/fold.js +13 -13
  61. package/dist/deletionEdges.js +6 -4
  62. package/dist/el.js +3 -1
  63. package/dist/figure.js +33 -31
  64. package/dist/figureData.js +32 -27
  65. package/dist/figureScene.js +43 -0
  66. package/dist/figureSettings.js +8 -8
  67. package/dist/foldVariants.js +2 -2
  68. package/dist/gbzCut.js +1 -1
  69. package/dist/genes/exonOutline.js +2 -2
  70. package/dist/genes/geneFiles.js +1 -1
  71. package/dist/genes/genePins.js +3 -3
  72. package/dist/gfa/gfaConverter.js +2 -2
  73. package/dist/gfa-core/gfaParser.js +1 -1
  74. package/dist/gfa-core/index.js +1 -1
  75. package/dist/graphLabels.js +4 -4
  76. package/dist/index.js +72 -73
  77. package/dist/labelLayout.js +8 -8
  78. package/dist/layout/forceCache.js +8 -8
  79. package/dist/layout/mergeRuns.js +2 -2
  80. package/dist/layout/orderedLayout.js +1 -3
  81. package/dist/layout/tubeMapLayout.js +6 -6
  82. package/dist/layout/walkRowDraw.js +11 -11
  83. package/dist/layout/walkRowLayout.js +3 -1
  84. package/dist/layout/walkStrip.js +14 -12
  85. package/dist/layoutEngines.js +1 -2
  86. package/dist/layoutModes.js +9 -9
  87. package/dist/nodeWidths.js +1 -3
  88. package/dist/pathColors.js +5 -5
  89. package/dist/pipeline.js +7 -7
  90. package/dist/referenceRampCss.js +9 -9
  91. package/dist/referenceStrip.js +9 -9
  92. package/dist/renderer/Canvas2DRenderer.js +2 -2
  93. package/dist/renderer/GeometryBuilder.js +8 -8
  94. package/dist/renderer/canvas.js +1 -1
  95. package/dist/renderer/svgCanvas.js +1 -1
  96. package/dist/tubeMap/axis.js +5 -5
  97. package/dist/tubeMap/bundle.js +7 -7
  98. package/dist/tubeMap/coarsen.js +6 -6
  99. package/dist/tubeMap/deviations.js +5 -5
  100. package/dist/tubeMap/draw.js +1 -1
  101. package/dist/tubeMap/genes.js +6 -6
  102. package/dist/tubeMap/nodeColors.js +9 -9
  103. package/dist/types/bubbles/bubblesFromGraph.d.ts +1 -0
  104. package/dist/types/bubbles/classifyBubble.d.ts +0 -1
  105. package/dist/types/cli/decodeText.d.ts +1 -0
  106. package/dist/types/cli/figure.d.ts +4 -15
  107. package/dist/types/deletionEdges.d.ts +3 -5
  108. package/dist/types/el.d.ts +1 -0
  109. package/dist/types/figureData.d.ts +7 -26
  110. package/dist/types/figureScene.d.ts +31 -0
  111. package/dist/types/genes/geneFiles.d.ts +2 -1
  112. package/dist/types/index.d.ts +1 -1
  113. package/dist/types/layout/deletionRoutes.d.ts +1 -1
  114. package/dist/types/layout/orderedLayout.d.ts +0 -6
  115. package/dist/types/layout/walkRowLayout.d.ts +1 -0
  116. package/dist/types/nodeWidths.d.ts +0 -1
  117. package/dist/types/renderer/Canvas2DRenderer.d.ts +1 -0
  118. package/dist/types/renderer/canvas.d.ts +2 -2
  119. package/dist/types/tubeMap/draw.d.ts +1 -0
  120. package/dist/types/util/geometry.d.ts +3 -3
  121. package/dist/types/version.d.ts +1 -1
  122. package/dist/util/SpatialIndex.js +4 -4
  123. package/dist/util/edgeCurves.js +3 -3
  124. package/dist/util/geometry.js +3 -3
  125. package/dist/util/hitDetection.js +5 -5
  126. package/dist/version.js +1 -1
  127. package/dist/viewport.js +8 -8
  128. package/dist/walkEncoding.js +9 -9
  129. package/dist/walkHighlight.js +10 -10
  130. package/dist/walkKey.js +5 -5
  131. package/package.json +3 -6
  132. package/dist/chunks/bandage-layout-3AR6BCUD.js +0 -4694
  133. package/dist/chunks/chunk-4BYTEJGW.js +0 -44
  134. package/dist/chunks/chunk-7XHHVYG7.js +0 -13
  135. package/dist/loadBandage.js +0 -6
  136. package/dist/types/bandage/bandage-layout.d.ts +0 -14
  137. package/dist/types/loadBandage.d.ts +0 -3
@@ -2,8 +2,8 @@ import {
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  EXON_COLOR,
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  exonOutlineTree,
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  exonStretches
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- } from "../chunks/chunk-3S3YVOJ7.js";
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- import "../chunks/chunk-NNODIW4U.js";
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+ } from "../chunks/chunk-JSUCGZ6K.js";
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+ import "../chunks/chunk-H2H4Y3TV.js";
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  export {
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  EXON_COLOR,
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  exonOutlineTree,
@@ -4,7 +4,7 @@ import {
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  genesFromText,
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  mergeOverlappingByName,
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  mergedIntervals
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- } from "../chunks/chunk-BXEPA4KS.js";
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+ } from "../chunks/chunk-G6UIYQZR.js";
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  export {
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  genesFromBed,
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  genesFromGff3Lines,
@@ -1,8 +1,8 @@
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  import {
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  genePins
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- } from "../chunks/chunk-BUBZ32IC.js";
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- import "../chunks/chunk-TAMCZHLW.js";
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- import "../chunks/chunk-2CVHXFK7.js";
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+ } from "../chunks/chunk-RPRHR56C.js";
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+ import "../chunks/chunk-N73TI3VG.js";
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+ import "../chunks/chunk-7SRWJLSC.js";
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  import "../chunks/chunk-CPMHA4W5.js";
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  import "../chunks/chunk-FYQWPEEY.js";
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  export {
@@ -1,8 +1,8 @@
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  import {
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  convertGFAToGraph
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- } from "../chunks/chunk-IW6CYVX2.js";
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+ } from "../chunks/chunk-AR4BUBMU.js";
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  import "../chunks/chunk-QYBZZI5H.js";
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- import "../chunks/chunk-CDLPYR5O.js";
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+ import "../chunks/chunk-5I3K4R2G.js";
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  import "../chunks/chunk-M6LK4GII.js";
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  import "../chunks/chunk-RAEABQNW.js";
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  import "../chunks/chunk-BPLIXMH7.js";
@@ -1,7 +1,7 @@
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  import {
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  parseGFA,
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  stableCoordinate
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- } from "../chunks/chunk-CDLPYR5O.js";
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+ } from "../chunks/chunk-5I3K4R2G.js";
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  export {
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  parseGFA,
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  stableCoordinate
@@ -2,7 +2,7 @@ import "../chunks/chunk-QYBZZI5H.js";
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  import {
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  parseGFA,
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  stableCoordinate
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- } from "../chunks/chunk-CDLPYR5O.js";
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+ } from "../chunks/chunk-5I3K4R2G.js";
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  export {
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  parseGFA,
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  stableCoordinate
@@ -6,11 +6,11 @@ import {
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  placeSizeLabels,
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  rowLabelBox,
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  sizeLabelCandidates
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- } from "./chunks/chunk-3ZZSX5HN.js";
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+ } from "./chunks/chunk-PTABFYQ7.js";
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  import "./chunks/chunk-AB35TJST.js";
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- import "./chunks/chunk-TAMCZHLW.js";
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- import "./chunks/chunk-N6FECAXP.js";
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- import "./chunks/chunk-2CVHXFK7.js";
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+ import "./chunks/chunk-N73TI3VG.js";
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+ import "./chunks/chunk-24WITXQY.js";
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+ import "./chunks/chunk-7SRWJLSC.js";
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  import "./chunks/chunk-CPMHA4W5.js";
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  import "./chunks/chunk-FYQWPEEY.js";
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  export {
package/dist/index.js CHANGED
@@ -7,7 +7,7 @@ import {
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  tubeMapMismatchAt,
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  tubeMapPicture,
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  tubeMapTrackAt
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- } from "./chunks/chunk-IUDJKOLB.js";
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+ } from "./chunks/chunk-B6IW3IRE.js";
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  import {
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  tubeMapFrame,
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  tubeMapNodeAt
@@ -15,40 +15,40 @@ import {
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  import {
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  drawTubeMapGenes,
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  tubeMapGenes
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- } from "./chunks/chunk-WEDZ76AK.js";
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+ } from "./chunks/chunk-4DRQTBBE.js";
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  import "./chunks/chunk-XXT2JCAC.js";
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  import {
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  tubeMapNodeColors
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- } from "./chunks/chunk-GNTTI6LA.js";
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+ } from "./chunks/chunk-T2PCSAFY.js";
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  import {
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  referenceKnots,
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  warpX
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  } from "./chunks/chunk-HK5Y2YWV.js";
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+ import {
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+ drawTubeMapRuler,
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+ referenceBoxes,
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+ rulerBoxes,
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+ tubeX
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+ } from "./chunks/chunk-XMW266WS.js";
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  import {
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  bundleRoutes
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- } from "./chunks/chunk-PKFMP65V.js";
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+ } from "./chunks/chunk-5GMFEPWR.js";
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  import {
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  drawLitConnector,
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  drawTubeMapConnectors,
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  tubeMapConnectors
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  } from "./chunks/chunk-2ZT7ZF7A.js";
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- import {
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- drawTubeMapRuler,
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- referenceBoxes,
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- rulerBoxes,
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- tubeX
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- } from "./chunks/chunk-BPRXQ2SS.js";
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  import {
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  createForceLayoutCache
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- } from "./chunks/chunk-CRTD2SBP.js";
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+ } from "./chunks/chunk-WZNPX7Q6.js";
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  import {
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  graphBubbles,
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  superbubblesFromGraph
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- } from "./chunks/chunk-FNGIQF43.js";
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+ } from "./chunks/chunk-XA5A27CS.js";
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  import {
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  bubblesFromGraph
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- } from "./chunks/chunk-CLOP7UVD.js";
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+ } from "./chunks/chunk-CQHUZHET.js";
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  import {
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  bubbleSubgraph
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@@ -57,40 +57,36 @@ import {
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  genesFromGff3Lines,
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  genesFromText,
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  mergeOverlappingByName
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- } from "./chunks/chunk-BXEPA4KS.js";
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+ } from "./chunks/chunk-G6UIYQZR.js";
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  import {
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  bubbleHalos
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- } from "./chunks/chunk-EHUBJDDB.js";
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+ } from "./chunks/chunk-JFY5PWQC.js";
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  import {
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  BUBBLE_KIND_NAMES,
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  bubbleSegmentIds,
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  classifyBubble
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- } from "./chunks/chunk-XKWD2RY3.js";
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+ } from "./chunks/chunk-URZ3CH2R.js";
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- } from "./chunks/chunk-5BGP5Z64.js";
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+ } from "./chunks/chunk-JLSJMCDJ.js";
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- } from "./chunks/chunk-MVFDSFV2.js";
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- } from "./chunks/chunk-ASSNZXCF.js";
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+ } from "./chunks/chunk-3AOGOCCQ.js";
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- } from "./chunks/chunk-47DYCZOK.js";
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+ } from "./chunks/chunk-RUCH6ZFL.js";
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- import {
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- } from "./chunks/chunk-WBCOREDZ.js";
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- import {
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- } from "./chunks/chunk-4BYTEJGW.js";
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+ } from "./chunks/chunk-EFQLEGWM.js";
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+ import {
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+ } from "./chunks/chunk-QLWI2PZ3.js";
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+ import {
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+ getDpr
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+ } from "./chunks/chunk-RBCE2OQH.js";
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- } from "./chunks/chunk-3S3YVOJ7.js";
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- } from "./chunks/chunk-ZIUKZUPJ.js";
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+ } from "./chunks/chunk-XL472HHD.js";
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- } from "./chunks/chunk-DRG4236Y.js";
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+ } from "./chunks/chunk-YN6FDIBT.js";
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+ } from "./chunks/chunk-4HWM3FNK.js";
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+ } from "./chunks/chunk-H2H4Y3TV.js";
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- } from "./chunks/chunk-TICYLD5F.js";
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+ } from "./chunks/chunk-7CC7N3XC.js";
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- } from "./chunks/chunk-DT2GGH4D.js";
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- } from "./chunks/chunk-4R6QNG23.js";
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+ } from "./chunks/chunk-WL6ZKUVC.js";
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  import "./chunks/chunk-CWFNEKST.js";
185
181
  import "./chunks/chunk-L3O7AWLI.js";
186
182
  import "./chunks/chunk-TZFWUT2C.js";
187
- import "./chunks/chunk-HNQPEMYE.js";
188
183
  import "./chunks/chunk-C44YRP5F.js";
184
+ import "./chunks/chunk-CM6LO6OC.js";
189
185
  import "./chunks/chunk-RVS2QCOX.js";
190
- import {
191
- loadBandage
192
- } from "./chunks/chunk-7XHHVYG7.js";
193
186
  import {
194
187
  HPRC_GBZ,
195
188
  cutGbzRegion,
196
189
  openGbz,
197
190
  parseRegion
198
- } from "./chunks/chunk-FLFBYSJO.js";
191
+ } from "./chunks/chunk-VQWHMWLF.js";
199
192
  import {
200
193
  compactTables,
201
194
  cutWindowGFA,
@@ -206,12 +199,9 @@ import {
206
199
  resolveReferenceSample
207
200
  } from "./chunks/chunk-Q7LYHGGQ.js";
208
201
  import "./chunks/chunk-WSIFAZU7.js";
209
- import {
210
- layoutGeometryInputs
211
- } from "./chunks/chunk-LOCJN3BZ.js";
212
202
  import {
213
203
  version
214
- } from "./chunks/chunk-EYK7DJZV.js";
204
+ } from "./chunks/chunk-J5FWKGOY.js";
215
205
  import {
216
206
  axisScaleOf,
217
207
  contains,
@@ -219,12 +209,21 @@ import {
219
209
  screenToLayout,
220
210
  viewportOf,
221
211
  zoomAbout
222
- } from "./chunks/chunk-L5WF4ZPS.js";
212
+ } from "./chunks/chunk-BS4UZ44I.js";
213
+ import {
214
+ rangeText,
215
+ walkKey,
216
+ walkPosition
217
+ } from "./chunks/chunk-4ETPXDO6.js";
218
+ import "./chunks/chunk-D5D36ZF6.js";
219
+ import {
220
+ layoutGeometryInputs
221
+ } from "./chunks/chunk-LOCJN3BZ.js";
223
222
  import {
224
223
  facetLifts,
225
224
  walkHighlight,
226
225
  walkLift
227
- } from "./chunks/chunk-R456ME6J.js";
226
+ } from "./chunks/chunk-CU6P5RUG.js";
228
227
  import {
229
228
  WALK_FIELDS,
230
229
  WALK_SCHEMES,
@@ -232,23 +231,18 @@ import {
232
231
  encodingSwatchCss,
233
232
  resolveEncoding,
234
233
  schemeCss
235
- } from "./chunks/chunk-ALDGONEI.js";
236
- import {
237
- rangeText,
238
- walkKey,
239
- walkPosition
240
- } from "./chunks/chunk-2LQ5BWT7.js";
234
+ } from "./chunks/chunk-VQC7KELB.js";
241
235
  import {
242
236
  REFERENCE_RAMP_MAX_HUE,
243
237
  buildGeometry,
244
238
  computeReferenceRamp
245
- } from "./chunks/chunk-SBMJNRTV.js";
239
+ } from "./chunks/chunk-A4PFFC4Q.js";
246
240
  import "./chunks/chunk-G2FD7S3C.js";
247
- import "./chunks/chunk-WFB5TXRA.js";
241
+ import "./chunks/chunk-ZY2AFL4Y.js";
248
242
  import {
249
243
  walkRowLabels,
250
244
  walkRowsExtent
251
- } from "./chunks/chunk-C7MZJSPT.js";
245
+ } from "./chunks/chunk-54POIBVC.js";
252
246
  import {
253
247
  filterSamples,
254
248
  walkRows
@@ -257,14 +251,18 @@ import {
257
251
  pathColorsLegible,
258
252
  pathLegend,
259
253
  walkLabelsOf
260
- } from "./chunks/chunk-TWRLC3KK.js";
254
+ } from "./chunks/chunk-3XSM4OZU.js";
261
255
  import {
262
256
  NODE_WIDTHS,
263
257
  maxNodeWidthPx,
264
258
  meanDepth,
265
259
  nodeInk,
266
260
  nodeWidthPx
267
- } from "./chunks/chunk-PBENCR5L.js";
261
+ } from "./chunks/chunk-JBCZIBFC.js";
262
+ import {
263
+ FIGURE_DEFAULTS,
264
+ figureSpecSettings
265
+ } from "./chunks/chunk-HNCXR2VS.js";
268
266
  import {
269
267
  ENGINE_DEFAULTS,
270
268
  FIT_PADDING,
@@ -277,18 +275,18 @@ import {
277
275
  forceLayout,
278
276
  layoutExtent,
279
277
  loadGraph
280
- } from "./chunks/chunk-XTCNEKO5.js";
278
+ } from "./chunks/chunk-2QLLQJ72.js";
279
+ import "./chunks/chunk-PUG7LXDF.js";
281
280
  import "./chunks/chunk-IGVV37VI.js";
282
281
  import "./chunks/chunk-OPPVSPEF.js";
283
282
  import "./chunks/chunk-VPE4AYP7.js";
284
- import "./chunks/chunk-PUG7LXDF.js";
285
- import "./chunks/chunk-IW6CYVX2.js";
283
+ import "./chunks/chunk-AR4BUBMU.js";
286
284
  import "./chunks/chunk-QYBZZI5H.js";
285
+ import "./chunks/chunk-5I3K4R2G.js";
287
286
  import {
288
287
  graphFromTables,
289
288
  graphTablesGFA
290
289
  } from "./chunks/chunk-PSMKPSO4.js";
291
- import "./chunks/chunk-CDLPYR5O.js";
292
290
  import "./chunks/chunk-M6LK4GII.js";
293
291
  import {
294
292
  PathVisits,
@@ -315,13 +313,13 @@ import {
315
313
  } from "./chunks/chunk-BPLIXMH7.js";
316
314
  import {
317
315
  formatBp
318
- } from "./chunks/chunk-3ZZSX5HN.js";
316
+ } from "./chunks/chunk-PTABFYQ7.js";
319
317
  import {
320
318
  LABEL_CHAR_PX,
321
319
  LABEL_PAD,
322
320
  LABEL_PX
323
321
  } from "./chunks/chunk-AB35TJST.js";
324
- import "./chunks/chunk-TAMCZHLW.js";
322
+ import "./chunks/chunk-N73TI3VG.js";
325
323
  import {
326
324
  BUBBLE_SPREADS
327
325
  } from "./chunks/chunk-UVBGRJQX.js";
@@ -333,8 +331,8 @@ import {
333
331
  import {
334
332
  deletionDrawing,
335
333
  deletionEdges
336
- } from "./chunks/chunk-N6FECAXP.js";
337
- import "./chunks/chunk-2CVHXFK7.js";
334
+ } from "./chunks/chunk-24WITXQY.js";
335
+ import "./chunks/chunk-7SRWJLSC.js";
338
336
  import {
339
337
  ROW_HEIGHT_PX
340
338
  } from "./chunks/chunk-CPMHA4W5.js";
@@ -351,6 +349,7 @@ import {
351
349
 
352
350
  // src/index.ts
353
351
  import { stressLayout } from "@jbrowse/graph-stress-layout";
352
+ import { loadFmmm } from "@jbrowse/graph-fmmm-layout";
354
353
  export {
355
354
  BUBBLE_KIND_COLORS,
356
355
  BUBBLE_KIND_NAMES,
@@ -471,7 +470,7 @@ export {
471
470
  layoutGeometryInputs,
472
471
  layoutLabels,
473
472
  layoutModeByValue,
474
- loadBandage,
473
+ loadFmmm as loadBandage,
475
474
  loadGraph,
476
475
  maxNodeWidthPx,
477
476
  meanDepth,
@@ -4,15 +4,15 @@ import {
4
4
  geneCoverageNote,
5
5
  geneLabelCandidates,
6
6
  layoutLabels
7
- } from "./chunks/chunk-DRG4236Y.js";
8
- import "./chunks/chunk-FP4H7SFT.js";
9
- import "./chunks/chunk-MLSWIMZO.js";
10
- import "./chunks/chunk-WFB5TXRA.js";
11
- import "./chunks/chunk-3ZZSX5HN.js";
7
+ } from "./chunks/chunk-YN6FDIBT.js";
8
+ import "./chunks/chunk-4HWM3FNK.js";
9
+ import "./chunks/chunk-KBEP7VYK.js";
10
+ import "./chunks/chunk-ZY2AFL4Y.js";
11
+ import "./chunks/chunk-PTABFYQ7.js";
12
12
  import "./chunks/chunk-AB35TJST.js";
13
- import "./chunks/chunk-TAMCZHLW.js";
14
- import "./chunks/chunk-N6FECAXP.js";
15
- import "./chunks/chunk-2CVHXFK7.js";
13
+ import "./chunks/chunk-N73TI3VG.js";
14
+ import "./chunks/chunk-24WITXQY.js";
15
+ import "./chunks/chunk-7SRWJLSC.js";
16
16
  import "./chunks/chunk-CPMHA4W5.js";
17
17
  import "./chunks/chunk-FYQWPEEY.js";
18
18
  export {
@@ -1,25 +1,25 @@
1
1
  import {
2
2
  createForceLayoutCache
3
- } from "../chunks/chunk-CRTD2SBP.js";
4
- import "../chunks/chunk-XTCNEKO5.js";
3
+ } from "../chunks/chunk-WZNPX7Q6.js";
4
+ import "../chunks/chunk-2QLLQJ72.js";
5
+ import "../chunks/chunk-PUG7LXDF.js";
5
6
  import "../chunks/chunk-IGVV37VI.js";
6
7
  import "../chunks/chunk-OPPVSPEF.js";
7
8
  import "../chunks/chunk-VPE4AYP7.js";
8
- import "../chunks/chunk-PUG7LXDF.js";
9
- import "../chunks/chunk-IW6CYVX2.js";
9
+ import "../chunks/chunk-AR4BUBMU.js";
10
10
  import "../chunks/chunk-QYBZZI5H.js";
11
+ import "../chunks/chunk-5I3K4R2G.js";
11
12
  import "../chunks/chunk-PSMKPSO4.js";
12
- import "../chunks/chunk-CDLPYR5O.js";
13
13
  import "../chunks/chunk-M6LK4GII.js";
14
14
  import "../chunks/chunk-RAEABQNW.js";
15
15
  import "../chunks/chunk-ES2N6V56.js";
16
16
  import "../chunks/chunk-G45YY72K.js";
17
17
  import "../chunks/chunk-BPLIXMH7.js";
18
- import "../chunks/chunk-TAMCZHLW.js";
18
+ import "../chunks/chunk-N73TI3VG.js";
19
19
  import "../chunks/chunk-UVBGRJQX.js";
20
20
  import "../chunks/chunk-6JEWNXCQ.js";
21
- import "../chunks/chunk-N6FECAXP.js";
22
- import "../chunks/chunk-2CVHXFK7.js";
21
+ import "../chunks/chunk-24WITXQY.js";
22
+ import "../chunks/chunk-7SRWJLSC.js";
23
23
  import "../chunks/chunk-CPMHA4W5.js";
24
24
  import "../chunks/chunk-FYQWPEEY.js";
25
25
  export {
@@ -3,8 +3,8 @@ import {
3
3
  polylineMidpoint,
4
4
  polylineSlice,
5
5
  splitRuns
6
- } from "../chunks/chunk-TAMCZHLW.js";
7
- import "../chunks/chunk-2CVHXFK7.js";
6
+ } from "../chunks/chunk-N73TI3VG.js";
7
+ import "../chunks/chunk-7SRWJLSC.js";
8
8
  import "../chunks/chunk-CPMHA4W5.js";
9
9
  import "../chunks/chunk-FYQWPEEY.js";
10
10
  export {
@@ -1,12 +1,10 @@
1
1
  import {
2
- layerGraph,
3
2
  orderedLayout,
4
3
  referenceOrder
5
- } from "../chunks/chunk-HNQPEMYE.js";
4
+ } from "../chunks/chunk-CM6LO6OC.js";
6
5
  import "../chunks/chunk-CPMHA4W5.js";
7
6
  import "../chunks/chunk-FYQWPEEY.js";
8
7
  export {
9
- layerGraph,
10
8
  orderedLayout,
11
9
  referenceOrder
12
10
  };
@@ -8,18 +8,18 @@ import {
8
8
  tubeMapReferenceLayout,
9
9
  tubeMapTracks,
10
10
  tubeWidth
11
- } from "../chunks/chunk-DK5P2YOL.js";
11
+ } from "../chunks/chunk-XI3ZUTWF.js";
12
12
  import "../chunks/chunk-CWFNEKST.js";
13
13
  import "../chunks/chunk-C44YRP5F.js";
14
- import "../chunks/chunk-TWRLC3KK.js";
14
+ import "../chunks/chunk-3XSM4OZU.js";
15
15
  import "../chunks/chunk-M6LK4GII.js";
16
16
  import "../chunks/chunk-RAEABQNW.js";
17
17
  import "../chunks/chunk-BPLIXMH7.js";
18
- import "../chunks/chunk-3ZZSX5HN.js";
18
+ import "../chunks/chunk-PTABFYQ7.js";
19
19
  import "../chunks/chunk-AB35TJST.js";
20
- import "../chunks/chunk-TAMCZHLW.js";
21
- import "../chunks/chunk-N6FECAXP.js";
22
- import "../chunks/chunk-2CVHXFK7.js";
20
+ import "../chunks/chunk-N73TI3VG.js";
21
+ import "../chunks/chunk-24WITXQY.js";
22
+ import "../chunks/chunk-7SRWJLSC.js";
23
23
  import "../chunks/chunk-CPMHA4W5.js";
24
24
  import "../chunks/chunk-FYQWPEEY.js";
25
25
  export {
@@ -26,23 +26,23 @@ import {
26
26
  walkRowsKey,
27
27
  walkRowsKeyTree,
28
28
  walkRowsTree
29
- } from "../chunks/chunk-NRV7R36Q.js";
30
- import "../chunks/chunk-ZIUKZUPJ.js";
31
- import "../chunks/chunk-NNODIW4U.js";
32
- import "../chunks/chunk-SBMJNRTV.js";
29
+ } from "../chunks/chunk-EFQLEGWM.js";
30
+ import "../chunks/chunk-XL472HHD.js";
31
+ import "../chunks/chunk-H2H4Y3TV.js";
32
+ import "../chunks/chunk-A4PFFC4Q.js";
33
33
  import "../chunks/chunk-G2FD7S3C.js";
34
- import "../chunks/chunk-WFB5TXRA.js";
35
- import "../chunks/chunk-TWRLC3KK.js";
36
- import "../chunks/chunk-PBENCR5L.js";
34
+ import "../chunks/chunk-ZY2AFL4Y.js";
35
+ import "../chunks/chunk-3XSM4OZU.js";
36
+ import "../chunks/chunk-JBCZIBFC.js";
37
37
  import "../chunks/chunk-M6LK4GII.js";
38
38
  import "../chunks/chunk-RAEABQNW.js";
39
39
  import "../chunks/chunk-ES2N6V56.js";
40
40
  import "../chunks/chunk-BPLIXMH7.js";
41
- import "../chunks/chunk-3ZZSX5HN.js";
41
+ import "../chunks/chunk-PTABFYQ7.js";
42
42
  import "../chunks/chunk-AB35TJST.js";
43
- import "../chunks/chunk-TAMCZHLW.js";
44
- import "../chunks/chunk-N6FECAXP.js";
45
- import "../chunks/chunk-2CVHXFK7.js";
43
+ import "../chunks/chunk-N73TI3VG.js";
44
+ import "../chunks/chunk-24WITXQY.js";
45
+ import "../chunks/chunk-7SRWJLSC.js";
46
46
  import "../chunks/chunk-CPMHA4W5.js";
47
47
  import "../chunks/chunk-FYQWPEEY.js";
48
48
  export {
@@ -1,8 +1,9 @@
1
1
  import {
2
+ READOUT_ROOM,
2
3
  walkRowLabels,
3
4
  walkRowLayout,
4
5
  walkRowsExtent
5
- } from "../chunks/chunk-C7MZJSPT.js";
6
+ } from "../chunks/chunk-54POIBVC.js";
6
7
  import "../chunks/chunk-RIPAA7OK.js";
7
8
  import "../chunks/chunk-M6LK4GII.js";
8
9
  import "../chunks/chunk-RAEABQNW.js";
@@ -10,6 +11,7 @@ import "../chunks/chunk-BPLIXMH7.js";
10
11
  import "../chunks/chunk-CPMHA4W5.js";
11
12
  import "../chunks/chunk-FYQWPEEY.js";
12
13
  export {
14
+ READOUT_ROOM,
13
15
  walkRowLabels,
14
16
  walkRowLayout,
15
17
  walkRowsExtent
@@ -9,26 +9,28 @@ import {
9
9
  walkStripApplies,
10
10
  walkStripFrame,
11
11
  walkStripLabelsTree
12
- } from "../chunks/chunk-JUIJI7RC.js";
12
+ } from "../chunks/chunk-BAETMD3J.js";
13
13
  import {
14
14
  LABELLED_ROW_PX
15
- } from "../chunks/chunk-NRV7R36Q.js";
16
- import "../chunks/chunk-ZIUKZUPJ.js";
17
- import "../chunks/chunk-NNODIW4U.js";
18
- import "../chunks/chunk-SBMJNRTV.js";
15
+ } from "../chunks/chunk-EFQLEGWM.js";
16
+ import "../chunks/chunk-XL472HHD.js";
17
+ import "../chunks/chunk-H2H4Y3TV.js";
18
+ import "../chunks/chunk-A4PFFC4Q.js";
19
19
  import "../chunks/chunk-G2FD7S3C.js";
20
- import "../chunks/chunk-WFB5TXRA.js";
21
- import "../chunks/chunk-TWRLC3KK.js";
22
- import "../chunks/chunk-PBENCR5L.js";
20
+ import "../chunks/chunk-ZY2AFL4Y.js";
21
+ import "../chunks/chunk-54POIBVC.js";
22
+ import "../chunks/chunk-RIPAA7OK.js";
23
+ import "../chunks/chunk-3XSM4OZU.js";
24
+ import "../chunks/chunk-JBCZIBFC.js";
23
25
  import "../chunks/chunk-M6LK4GII.js";
24
26
  import "../chunks/chunk-RAEABQNW.js";
25
27
  import "../chunks/chunk-ES2N6V56.js";
26
28
  import "../chunks/chunk-BPLIXMH7.js";
27
- import "../chunks/chunk-3ZZSX5HN.js";
29
+ import "../chunks/chunk-PTABFYQ7.js";
28
30
  import "../chunks/chunk-AB35TJST.js";
29
- import "../chunks/chunk-TAMCZHLW.js";
30
- import "../chunks/chunk-N6FECAXP.js";
31
- import "../chunks/chunk-2CVHXFK7.js";
31
+ import "../chunks/chunk-N73TI3VG.js";
32
+ import "../chunks/chunk-24WITXQY.js";
33
+ import "../chunks/chunk-7SRWJLSC.js";
32
34
  import "../chunks/chunk-CPMHA4W5.js";
33
35
  import "../chunks/chunk-FYQWPEEY.js";
34
36
  export {
@@ -3,8 +3,7 @@ import {
3
3
  LAYOUT_ENGINE_VALUES,
4
4
  isLayoutEngineKind,
5
5
  layoutEngine
6
- } from "./chunks/chunk-DT2GGH4D.js";
7
- import "./chunks/chunk-7XHHVYG7.js";
6
+ } from "./chunks/chunk-JMABOQWL.js";
8
7
  export {
9
8
  LAYOUT_ENGINES,
10
9
  LAYOUT_ENGINE_VALUES,