@jbrowse/bandage-core 10.2.2 → 10.2.3

package/dist/chunks/{chunk-WFB5TXRA.js → chunk-ZY2AFL4Y.js}

@@ -1,12 +1,6 @@
 import {
-  bypassedPoints
-} from "./chunk-N6FECAXP.js";
-import {
-  computeEdgeCurves,
-  edgeJoinOf,
-  routedEdgeCurves,
-  strandSides
-} from "./chunk-2CVHXFK7.js";
+  edgeCurvesOf
+} from "./chunk-24WITXQY.js";
 
 // src/util/edgeCurves.ts
 var cache = /* @__PURE__ */ new WeakMap();
@@ -18,29 +12,17 @@ function baseEdgeCurves(nodePositions, graph, axis, deletions, version, routes,
   }
   const curves = /* @__PURE__ */ new Map();
   for (let ei = 0; ei < graph.edges.length; ei++) {
-    const edge = graph.edges[ei];
-    const from = nodePositions[edge.from];
-    const to = nodePositions[edge.to];
-    if (from?.length && to?.length) {
-      const bypassed = deletions?.get(ei);
-      const route = bypassed && routes?.[ei];
-      curves.set(
-        ei,
-        route ? routedEdgeCurves(
-          from,
-          to,
-          route,
-          stranded ? strandSides(edge) : void 0
-        ) : computeEdgeCurves(
-          from,
-          to,
-          edgeJoinOf(edge, stranded),
-          0,
-          0,
-          axis,
-          bypassed ? bypassedPoints(nodePositions, bypassed) : []
-        )
-      );
+    const bypassed = deletions?.get(ei);
+    const edgeCurves = edgeCurvesOf(
+      nodePositions,
+      graph.edges[ei],
+      axis,
+      bypassed,
+      bypassed && routes?.[ei],
+      stranded
+    );
+    if (edgeCurves) {
+      curves.set(ei, edgeCurves);
     }
   }
   cache.set(nodePositions, {

package/dist/cli/decodeText.js

@@ -0,0 +1,6 @@
+import {
+  decodeText
+} from "../chunks/chunk-O4EGE27I.js";
+export {
+  decodeText
+};

package/dist/cli/figure.js

@@ -1,83 +1,83 @@
 #!/usr/bin/env node
 import {
-  genesFromBed,
-  genesFromGff3Lines,
+  decodeText
+} from "../chunks/chunk-O4EGE27I.js";
+import {
   genesFromText
-} from "../chunks/chunk-BXEPA4KS.js";
+} from "../chunks/chunk-G6UIYQZR.js";
 import {
   figureSvg
-} from "../chunks/chunk-ASSNZXCF.js";
-import "../chunks/chunk-47DYCZOK.js";
-import "../chunks/chunk-JUIJI7RC.js";
-import "../chunks/chunk-WBCOREDZ.js";
-import "../chunks/chunk-4BYTEJGW.js";
+} from "../chunks/chunk-3AOGOCCQ.js";
+import "../chunks/chunk-RUCH6ZFL.js";
+import "../chunks/chunk-BAETMD3J.js";
 import {
   genesOnRow,
   placeRowGenes
-} from "../chunks/chunk-NRV7R36Q.js";
-import "../chunks/chunk-3S3YVOJ7.js";
-import "../chunks/chunk-BUBZ32IC.js";
-import "../chunks/chunk-ZIUKZUPJ.js";
-import "../chunks/chunk-DRG4236Y.js";
-import "../chunks/chunk-FP4H7SFT.js";
-import "../chunks/chunk-MLSWIMZO.js";
-import "../chunks/chunk-NNODIW4U.js";
+} from "../chunks/chunk-EFQLEGWM.js";
+import "../chunks/chunk-QLWI2PZ3.js";
+import "../chunks/chunk-RBCE2OQH.js";
+import "../chunks/chunk-JSUCGZ6K.js";
+import "../chunks/chunk-RPRHR56C.js";
+import "../chunks/chunk-XL472HHD.js";
+import "../chunks/chunk-YN6FDIBT.js";
+import "../chunks/chunk-4HWM3FNK.js";
+import "../chunks/chunk-KBEP7VYK.js";
+import "../chunks/chunk-H2H4Y3TV.js";
+import {
+  laidOutGraph,
+  walkLayers
+} from "../chunks/chunk-7CC7N3XC.js";
 import {
   LAYOUT_ENGINE_VALUES,
-  isLayoutEngineKind,
-  layoutEngine
-} from "../chunks/chunk-DT2GGH4D.js";
+  isLayoutEngineKind
+} from "../chunks/chunk-JMABOQWL.js";
 import {
-  LAYOUT_MODES,
-  layoutModeByValue
-} from "../chunks/chunk-4R6QNG23.js";
+  LAYOUT_MODES
+} from "../chunks/chunk-WL6ZKUVC.js";
 import "../chunks/chunk-LOEA5IHZ.js";
-import "../chunks/chunk-DK5P2YOL.js";
+import "../chunks/chunk-XI3ZUTWF.js";
 import "../chunks/chunk-CWFNEKST.js";
 import "../chunks/chunk-L3O7AWLI.js";
 import "../chunks/chunk-TZFWUT2C.js";
-import "../chunks/chunk-HNQPEMYE.js";
 import "../chunks/chunk-C44YRP5F.js";
+import "../chunks/chunk-CM6LO6OC.js";
 import "../chunks/chunk-RVS2QCOX.js";
-import "../chunks/chunk-7XHHVYG7.js";
 import {
   HPRC_GBZ,
   cutGbzRegion,
   haplotypeIndexBeside,
   openGbz,
   parseRegion
-} from "../chunks/chunk-FLFBYSJO.js";
+} from "../chunks/chunk-VQWHMWLF.js";
 import "../chunks/chunk-Q7LYHGGQ.js";
 import "../chunks/chunk-WSIFAZU7.js";
+import "../chunks/chunk-J5FWKGOY.js";
+import "../chunks/chunk-BS4UZ44I.js";
+import "../chunks/chunk-4ETPXDO6.js";
+import "../chunks/chunk-D5D36ZF6.js";
 import "../chunks/chunk-LOCJN3BZ.js";
-import "../chunks/chunk-EYK7DJZV.js";
-import "../chunks/chunk-L5WF4ZPS.js";
-import "../chunks/chunk-R456ME6J.js";
-import "../chunks/chunk-ALDGONEI.js";
-import "../chunks/chunk-2LQ5BWT7.js";
-import "../chunks/chunk-SBMJNRTV.js";
+import "../chunks/chunk-CU6P5RUG.js";
+import "../chunks/chunk-VQC7KELB.js";
+import "../chunks/chunk-A4PFFC4Q.js";
 import "../chunks/chunk-G2FD7S3C.js";
-import "../chunks/chunk-WFB5TXRA.js";
-import "../chunks/chunk-C7MZJSPT.js";
+import "../chunks/chunk-ZY2AFL4Y.js";
+import "../chunks/chunk-54POIBVC.js";
 import {
   filterSamples,
   walkRows
 } from "../chunks/chunk-RIPAA7OK.js";
-import "../chunks/chunk-TWRLC3KK.js";
-import "../chunks/chunk-PBENCR5L.js";
-import {
-  engineSettingsOf,
-  forceLayout,
-  loadGraph
-} from "../chunks/chunk-XTCNEKO5.js";
+import "../chunks/chunk-3XSM4OZU.js";
+import "../chunks/chunk-JBCZIBFC.js";
+import "../chunks/chunk-HNCXR2VS.js";
+import "../chunks/chunk-2QLLQJ72.js";
+import "../chunks/chunk-PUG7LXDF.js";
 import "../chunks/chunk-IGVV37VI.js";
 import "../chunks/chunk-OPPVSPEF.js";
 import "../chunks/chunk-VPE4AYP7.js";
-import "../chunks/chunk-PUG7LXDF.js";
-import "../chunks/chunk-IW6CYVX2.js";
+import "../chunks/chunk-AR4BUBMU.js";
 import "../chunks/chunk-QYBZZI5H.js";
+import "../chunks/chunk-5I3K4R2G.js";
 import "../chunks/chunk-PSMKPSO4.js";
-import "../chunks/chunk-CDLPYR5O.js";
 import "../chunks/chunk-M6LK4GII.js";
 import "../chunks/chunk-RAEABQNW.js";
 import "../chunks/chunk-ES2N6V56.js";
@@ -88,14 +88,14 @@ import {
 } from "../chunks/chunk-RAKOB6IV.js";
 import "../chunks/chunk-G45YY72K.js";
 import "../chunks/chunk-BPLIXMH7.js";
-import "../chunks/chunk-3ZZSX5HN.js";
+import "../chunks/chunk-PTABFYQ7.js";
 import "../chunks/chunk-AB35TJST.js";
-import "../chunks/chunk-TAMCZHLW.js";
+import "../chunks/chunk-N73TI3VG.js";
 import "../chunks/chunk-UVBGRJQX.js";
 import "../chunks/chunk-6JEWNXCQ.js";
 import "../chunks/chunk-JKJWSY4V.js";
-import "../chunks/chunk-N6FECAXP.js";
-import "../chunks/chunk-2CVHXFK7.js";
+import "../chunks/chunk-24WITXQY.js";
+import "../chunks/chunk-7SRWJLSC.js";
 import "../chunks/chunk-CPMHA4W5.js";
 import "../chunks/chunk-FYQWPEEY.js";
 import "../chunks/chunk-XV4P5KEQ.js";
@@ -104,7 +104,6 @@ import "../chunks/chunk-XV4P5KEQ.js";
 import { access, open, readFile, writeFile } from "node:fs/promises";
 import path from "node:path";
 import { parseArgs } from "node:util";
-import { gunzipSync } from "node:zlib";
 import { TabixIndexedFile } from "@gmod/tabix";
 var isUrl = (s) => /^https?:\/\//.test(s);
 function byteSource(location) {
@@ -136,8 +135,7 @@ async function fetchOk(location, init) {
 }
 async function text(location) {
   const bytes = isUrl(location) ? new Uint8Array(await (await fetchOk(location)).arrayBuffer()) : await readFile(location);
-  const gzipped = bytes[0] === 31 && bytes[1] === 139;
-  return new TextDecoder().decode(gzipped ? gunzipSync(bytes) : bytes);
+  return decodeText(bytes);
 }
 async function readGenes(genes, graph, resolve) {
   const backbone = graphBackbone(graph);
@@ -148,14 +146,13 @@ async function readGenes(genes, graph, resolve) {
     backbone.contigs.map((c) => c.refName),
     genes.refNames
   );
-  const format = genes.format ?? (/\.bed(\.gz)?$/i.test(genes.file) ? "bed" : "gff3");
   const { names, features } = genes.index ? await indexedGenes(
     resolve(genes.file),
     resolve(genes.index),
-    format,
+    genes.format ?? (/\.bed(\.gz)?$/i.test(genes.file) ? "bed" : "gff3"),
     backbone.contigs,
     bind
-  ) : namedBy(genesFromText(await text(resolve(genes.file))));
+  ) : namedBy(genesFromText(await text(resolve(genes.file)), genes.format));
   if (!names.some((name) => bind(name) !== void 0)) {
     const shown = names.slice(0, 4).join(", ");
     console.warn(
@@ -184,7 +181,7 @@ async function indexedGenes(file, index, format, contigs, bind) {
   }
   return {
     names,
-    features: format === "gff3" ? genesFromGff3Lines(lines) : genesFromBed(lines.join("\n"))
+    features: genesFromText(lines.join("\n"), format)
   };
 }
 async function exists(location) {
@@ -242,10 +239,12 @@ async function renderSpec(spec, base) {
   } else {
     throw new Error("a spec names its graph as `gfa` or `gbz`");
   }
-  const graph = loadGraph(source.text, source.name, {
-    referencePath: spec.referencePath
-  });
-  const layout = layoutModeByValue(spec.layout ?? "force").run(graph, source.region) ?? (await forceLayout(graph, engineSettingsOf(spec), layoutEngine)).result;
+  const { graph, layout } = await laidOutGraph(
+    source.text,
+    source.name,
+    source.region,
+    spec
+  );
   const bars = spec.walkStrip ? walkRows(graph, source.region) : void 0;
   const stripRows = bars && {
     ...bars,
@@ -267,7 +266,7 @@ async function renderSpec(spec, base) {
         unread: 0
       }
     },
-    walks: spec.walks?.map((w) => typeof w === "string" ? { walk: w } : w),
+    walks: walkLayers(spec.walks),
     region: source.region,
     genes,
     spec

package/dist/cli/fold.js

@@ -2,42 +2,42 @@
 import {
   writeRgfa
 } from "../chunks/chunk-B4YH42OP.js";
+import {
+  decodeText
+} from "../chunks/chunk-O4EGE27I.js";
 import {
   foldVariants
-} from "../chunks/chunk-AFP3NWSL.js";
+} from "../chunks/chunk-DY3JCAMX.js";
 import {
   loadGraph
-} from "../chunks/chunk-XTCNEKO5.js";
+} from "../chunks/chunk-2QLLQJ72.js";
+import "../chunks/chunk-PUG7LXDF.js";
 import "../chunks/chunk-IGVV37VI.js";
 import "../chunks/chunk-OPPVSPEF.js";
 import "../chunks/chunk-VPE4AYP7.js";
-import "../chunks/chunk-PUG7LXDF.js";
-import "../chunks/chunk-IW6CYVX2.js";
+import "../chunks/chunk-AR4BUBMU.js";
 import "../chunks/chunk-QYBZZI5H.js";
+import "../chunks/chunk-5I3K4R2G.js";
 import "../chunks/chunk-PSMKPSO4.js";
-import "../chunks/chunk-CDLPYR5O.js";
 import "../chunks/chunk-M6LK4GII.js";
 import "../chunks/chunk-RAEABQNW.js";
 import "../chunks/chunk-ES2N6V56.js";
 import "../chunks/chunk-G45YY72K.js";
 import "../chunks/chunk-BPLIXMH7.js";
-import "../chunks/chunk-TAMCZHLW.js";
+import "../chunks/chunk-N73TI3VG.js";
 import "../chunks/chunk-UVBGRJQX.js";
 import "../chunks/chunk-6JEWNXCQ.js";
-import "../chunks/chunk-N6FECAXP.js";
-import "../chunks/chunk-2CVHXFK7.js";
+import "../chunks/chunk-24WITXQY.js";
+import "../chunks/chunk-7SRWJLSC.js";
 import "../chunks/chunk-CPMHA4W5.js";
 import "../chunks/chunk-FYQWPEEY.js";
 
 // src/cli/fold.ts
 import { readFile, writeFile } from "node:fs/promises";
 import { parseArgs } from "node:util";
-import { gunzipSync } from "node:zlib";
-var USAGE = "usage: bandage-fold <graph.gfa[.gz] | -> --below <bp> [-o out.gfa]";
+var USAGE = "usage: bandage-fold <graph.gfa[.gz] | -> --below <bp> [--reference <path>] [-o out.gfa]";
 async function readInput(location) {
-  const bytes = await readFile(location === "-" ? "/dev/stdin" : location);
-  const gzipped = bytes[0] === 31 && bytes[1] === 139;
-  return new TextDecoder().decode(gzipped ? gunzipSync(bytes) : bytes);
+  return decodeText(await readFile(location === "-" ? "/dev/stdin" : location));
 }
 async function main() {
   const { values, positionals } = parseArgs({

package/dist/deletionEdges.js

@@ -3,9 +3,10 @@ import {
   closableDeletions,
   deletionArcCurves,
   deletionDrawing,
-  deletionEdges
-} from "./chunks/chunk-N6FECAXP.js";
-import "./chunks/chunk-2CVHXFK7.js";
+  deletionEdges,
+  edgeCurvesOf
+} from "./chunks/chunk-24WITXQY.js";
+import "./chunks/chunk-7SRWJLSC.js";
 import "./chunks/chunk-CPMHA4W5.js";
 import "./chunks/chunk-FYQWPEEY.js";
 export {
@@ -13,5 +14,6 @@ export {
   closableDeletions,
   deletionArcCurves,
   deletionDrawing,
-  deletionEdges
+  deletionEdges,
+  edgeCurvesOf
 };

package/dist/el.js

@@ -1,8 +1,10 @@
 import {
   el,
+  escapeAttr,
   serializeEl
-} from "./chunks/chunk-NNODIW4U.js";
+} from "./chunks/chunk-H2H4Y3TV.js";
 export {
   el,
+  escapeAttr,
   serializeEl
 };

package/dist/figure.js

@@ -1,54 +1,56 @@
 import {
   figureSvg
-} from "./chunks/chunk-ASSNZXCF.js";
-import "./chunks/chunk-47DYCZOK.js";
-import "./chunks/chunk-JUIJI7RC.js";
-import "./chunks/chunk-WBCOREDZ.js";
-import "./chunks/chunk-4BYTEJGW.js";
-import "./chunks/chunk-NRV7R36Q.js";
-import "./chunks/chunk-3S3YVOJ7.js";
-import "./chunks/chunk-BUBZ32IC.js";
-import "./chunks/chunk-ZIUKZUPJ.js";
-import "./chunks/chunk-DRG4236Y.js";
-import "./chunks/chunk-FP4H7SFT.js";
-import "./chunks/chunk-MLSWIMZO.js";
-import "./chunks/chunk-NNODIW4U.js";
+} from "./chunks/chunk-3AOGOCCQ.js";
+import "./chunks/chunk-RUCH6ZFL.js";
+import "./chunks/chunk-BAETMD3J.js";
+import "./chunks/chunk-EFQLEGWM.js";
+import "./chunks/chunk-QLWI2PZ3.js";
+import "./chunks/chunk-RBCE2OQH.js";
+import "./chunks/chunk-JSUCGZ6K.js";
+import "./chunks/chunk-RPRHR56C.js";
+import "./chunks/chunk-XL472HHD.js";
+import "./chunks/chunk-YN6FDIBT.js";
+import "./chunks/chunk-4HWM3FNK.js";
+import "./chunks/chunk-KBEP7VYK.js";
+import "./chunks/chunk-H2H4Y3TV.js";
+import "./chunks/chunk-J5FWKGOY.js";
+import "./chunks/chunk-BS4UZ44I.js";
+import "./chunks/chunk-4ETPXDO6.js";
+import "./chunks/chunk-D5D36ZF6.js";
 import "./chunks/chunk-LOCJN3BZ.js";
-import "./chunks/chunk-EYK7DJZV.js";
-import "./chunks/chunk-L5WF4ZPS.js";
-import "./chunks/chunk-R456ME6J.js";
-import "./chunks/chunk-ALDGONEI.js";
-import "./chunks/chunk-2LQ5BWT7.js";
-import "./chunks/chunk-SBMJNRTV.js";
+import "./chunks/chunk-CU6P5RUG.js";
+import "./chunks/chunk-VQC7KELB.js";
+import "./chunks/chunk-A4PFFC4Q.js";
 import "./chunks/chunk-G2FD7S3C.js";
-import "./chunks/chunk-WFB5TXRA.js";
-import "./chunks/chunk-C7MZJSPT.js";
+import "./chunks/chunk-ZY2AFL4Y.js";
+import "./chunks/chunk-54POIBVC.js";
 import "./chunks/chunk-RIPAA7OK.js";
-import "./chunks/chunk-TWRLC3KK.js";
-import "./chunks/chunk-PBENCR5L.js";
-import "./chunks/chunk-XTCNEKO5.js";
+import "./chunks/chunk-3XSM4OZU.js";
+import "./chunks/chunk-JBCZIBFC.js";
+import "./chunks/chunk-HNCXR2VS.js";
+import "./chunks/chunk-2QLLQJ72.js";
+import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-IGVV37VI.js";
 import "./chunks/chunk-OPPVSPEF.js";
 import "./chunks/chunk-VPE4AYP7.js";
-import "./chunks/chunk-PUG7LXDF.js";
-import "./chunks/chunk-IW6CYVX2.js";
+import "./chunks/chunk-AR4BUBMU.js";
 import "./chunks/chunk-QYBZZI5H.js";
+import "./chunks/chunk-5I3K4R2G.js";
 import "./chunks/chunk-PSMKPSO4.js";
-import "./chunks/chunk-CDLPYR5O.js";
 import "./chunks/chunk-M6LK4GII.js";
 import "./chunks/chunk-RAEABQNW.js";
 import "./chunks/chunk-ES2N6V56.js";
 import "./chunks/chunk-RAKOB6IV.js";
 import "./chunks/chunk-G45YY72K.js";
 import "./chunks/chunk-BPLIXMH7.js";
-import "./chunks/chunk-3ZZSX5HN.js";
+import "./chunks/chunk-PTABFYQ7.js";
 import "./chunks/chunk-AB35TJST.js";
-import "./chunks/chunk-TAMCZHLW.js";
+import "./chunks/chunk-N73TI3VG.js";
 import "./chunks/chunk-UVBGRJQX.js";
 import "./chunks/chunk-6JEWNXCQ.js";
 import "./chunks/chunk-JKJWSY4V.js";
-import "./chunks/chunk-N6FECAXP.js";
-import "./chunks/chunk-2CVHXFK7.js";
+import "./chunks/chunk-24WITXQY.js";
+import "./chunks/chunk-7SRWJLSC.js";
 import "./chunks/chunk-CPMHA4W5.js";
 import "./chunks/chunk-FYQWPEEY.js";
 import "./chunks/chunk-XV4P5KEQ.js";

package/dist/figureData.js

@@ -1,61 +1,66 @@
 import {
   figureData,
-  gfaFigureData
-} from "./chunks/chunk-TICYLD5F.js";
-import "./chunks/chunk-DT2GGH4D.js";
-import "./chunks/chunk-4R6QNG23.js";
+  gfaFigureData,
+  laidOutGraph,
+  walkLayers
+} from "./chunks/chunk-7CC7N3XC.js";
+import "./chunks/chunk-JMABOQWL.js";
+import "./chunks/chunk-WL6ZKUVC.js";
 import "./chunks/chunk-LOEA5IHZ.js";
-import "./chunks/chunk-DK5P2YOL.js";
+import "./chunks/chunk-XI3ZUTWF.js";
 import "./chunks/chunk-CWFNEKST.js";
 import "./chunks/chunk-L3O7AWLI.js";
 import "./chunks/chunk-TZFWUT2C.js";
-import "./chunks/chunk-HNQPEMYE.js";
 import "./chunks/chunk-C44YRP5F.js";
+import "./chunks/chunk-CM6LO6OC.js";
 import "./chunks/chunk-RVS2QCOX.js";
-import "./chunks/chunk-7XHHVYG7.js";
-import "./chunks/chunk-FLFBYSJO.js";
+import "./chunks/chunk-VQWHMWLF.js";
 import "./chunks/chunk-Q7LYHGGQ.js";
 import "./chunks/chunk-WSIFAZU7.js";
+import "./chunks/chunk-J5FWKGOY.js";
+import "./chunks/chunk-BS4UZ44I.js";
+import "./chunks/chunk-4ETPXDO6.js";
+import "./chunks/chunk-D5D36ZF6.js";
 import "./chunks/chunk-LOCJN3BZ.js";
-import "./chunks/chunk-EYK7DJZV.js";
-import "./chunks/chunk-L5WF4ZPS.js";
-import "./chunks/chunk-R456ME6J.js";
-import "./chunks/chunk-ALDGONEI.js";
-import "./chunks/chunk-2LQ5BWT7.js";
-import "./chunks/chunk-SBMJNRTV.js";
+import "./chunks/chunk-CU6P5RUG.js";
+import "./chunks/chunk-VQC7KELB.js";
+import "./chunks/chunk-A4PFFC4Q.js";
 import "./chunks/chunk-G2FD7S3C.js";
-import "./chunks/chunk-WFB5TXRA.js";
-import "./chunks/chunk-C7MZJSPT.js";
+import "./chunks/chunk-ZY2AFL4Y.js";
+import "./chunks/chunk-54POIBVC.js";
 import "./chunks/chunk-RIPAA7OK.js";
-import "./chunks/chunk-TWRLC3KK.js";
-import "./chunks/chunk-PBENCR5L.js";
-import "./chunks/chunk-XTCNEKO5.js";
+import "./chunks/chunk-3XSM4OZU.js";
+import "./chunks/chunk-JBCZIBFC.js";
+import "./chunks/chunk-HNCXR2VS.js";
+import "./chunks/chunk-2QLLQJ72.js";
+import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-IGVV37VI.js";
 import "./chunks/chunk-OPPVSPEF.js";
 import "./chunks/chunk-VPE4AYP7.js";
-import "./chunks/chunk-PUG7LXDF.js";
-import "./chunks/chunk-IW6CYVX2.js";
+import "./chunks/chunk-AR4BUBMU.js";
 import "./chunks/chunk-QYBZZI5H.js";
+import "./chunks/chunk-5I3K4R2G.js";
 import "./chunks/chunk-PSMKPSO4.js";
-import "./chunks/chunk-CDLPYR5O.js";
 import "./chunks/chunk-M6LK4GII.js";
 import "./chunks/chunk-RAEABQNW.js";
 import "./chunks/chunk-ES2N6V56.js";
 import "./chunks/chunk-RAKOB6IV.js";
 import "./chunks/chunk-G45YY72K.js";
 import "./chunks/chunk-BPLIXMH7.js";
-import "./chunks/chunk-3ZZSX5HN.js";
+import "./chunks/chunk-PTABFYQ7.js";
 import "./chunks/chunk-AB35TJST.js";
-import "./chunks/chunk-TAMCZHLW.js";
+import "./chunks/chunk-N73TI3VG.js";
 import "./chunks/chunk-UVBGRJQX.js";
 import "./chunks/chunk-6JEWNXCQ.js";
 import "./chunks/chunk-JKJWSY4V.js";
-import "./chunks/chunk-N6FECAXP.js";
-import "./chunks/chunk-2CVHXFK7.js";
+import "./chunks/chunk-24WITXQY.js";
+import "./chunks/chunk-7SRWJLSC.js";
 import "./chunks/chunk-CPMHA4W5.js";
 import "./chunks/chunk-FYQWPEEY.js";
 import "./chunks/chunk-XV4P5KEQ.js";
 export {
   figureData,
-  gfaFigureData
+  gfaFigureData,
+  laidOutGraph,
+  walkLayers
 };

package/dist/figureScene.js

@@ -0,0 +1,43 @@
+import {
+  figureScene
+} from "./chunks/chunk-D5D36ZF6.js";
+import "./chunks/chunk-LOCJN3BZ.js";
+import "./chunks/chunk-CU6P5RUG.js";
+import "./chunks/chunk-VQC7KELB.js";
+import "./chunks/chunk-A4PFFC4Q.js";
+import "./chunks/chunk-G2FD7S3C.js";
+import "./chunks/chunk-ZY2AFL4Y.js";
+import "./chunks/chunk-54POIBVC.js";
+import "./chunks/chunk-RIPAA7OK.js";
+import "./chunks/chunk-3XSM4OZU.js";
+import "./chunks/chunk-JBCZIBFC.js";
+import "./chunks/chunk-HNCXR2VS.js";
+import "./chunks/chunk-2QLLQJ72.js";
+import "./chunks/chunk-PUG7LXDF.js";
+import "./chunks/chunk-IGVV37VI.js";
+import "./chunks/chunk-OPPVSPEF.js";
+import "./chunks/chunk-VPE4AYP7.js";
+import "./chunks/chunk-AR4BUBMU.js";
+import "./chunks/chunk-QYBZZI5H.js";
+import "./chunks/chunk-5I3K4R2G.js";
+import "./chunks/chunk-PSMKPSO4.js";
+import "./chunks/chunk-M6LK4GII.js";
+import "./chunks/chunk-RAEABQNW.js";
+import "./chunks/chunk-ES2N6V56.js";
+import "./chunks/chunk-RAKOB6IV.js";
+import "./chunks/chunk-G45YY72K.js";
+import "./chunks/chunk-BPLIXMH7.js";
+import "./chunks/chunk-PTABFYQ7.js";
+import "./chunks/chunk-AB35TJST.js";
+import "./chunks/chunk-N73TI3VG.js";
+import "./chunks/chunk-UVBGRJQX.js";
+import "./chunks/chunk-6JEWNXCQ.js";
+import "./chunks/chunk-JKJWSY4V.js";
+import "./chunks/chunk-24WITXQY.js";
+import "./chunks/chunk-7SRWJLSC.js";
+import "./chunks/chunk-CPMHA4W5.js";
+import "./chunks/chunk-FYQWPEEY.js";
+import "./chunks/chunk-XV4P5KEQ.js";
+export {
+  figureScene
+};

package/dist/figureSettings.js

@@ -1,26 +1,26 @@
 import {
   FIGURE_DEFAULTS,
   figureSpecSettings
-} from "./chunks/chunk-MVFDSFV2.js";
-import "./chunks/chunk-XTCNEKO5.js";
+} from "./chunks/chunk-HNCXR2VS.js";
+import "./chunks/chunk-2QLLQJ72.js";
+import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-IGVV37VI.js";
 import "./chunks/chunk-OPPVSPEF.js";
 import "./chunks/chunk-VPE4AYP7.js";
-import "./chunks/chunk-PUG7LXDF.js";
-import "./chunks/chunk-IW6CYVX2.js";
+import "./chunks/chunk-AR4BUBMU.js";
 import "./chunks/chunk-QYBZZI5H.js";
+import "./chunks/chunk-5I3K4R2G.js";
 import "./chunks/chunk-PSMKPSO4.js";
-import "./chunks/chunk-CDLPYR5O.js";
 import "./chunks/chunk-M6LK4GII.js";
 import "./chunks/chunk-RAEABQNW.js";
 import "./chunks/chunk-ES2N6V56.js";
 import "./chunks/chunk-G45YY72K.js";
 import "./chunks/chunk-BPLIXMH7.js";
-import "./chunks/chunk-TAMCZHLW.js";
+import "./chunks/chunk-N73TI3VG.js";
 import "./chunks/chunk-UVBGRJQX.js";
 import "./chunks/chunk-6JEWNXCQ.js";
-import "./chunks/chunk-N6FECAXP.js";
-import "./chunks/chunk-2CVHXFK7.js";
+import "./chunks/chunk-24WITXQY.js";
+import "./chunks/chunk-7SRWJLSC.js";
 import "./chunks/chunk-CPMHA4W5.js";
 import "./chunks/chunk-FYQWPEEY.js";
 export {

package/dist/foldVariants.js

@@ -1,7 +1,7 @@
 import {
   foldVariants
-} from "./chunks/chunk-AFP3NWSL.js";
-import "./chunks/chunk-2CVHXFK7.js";
+} from "./chunks/chunk-DY3JCAMX.js";
+import "./chunks/chunk-7SRWJLSC.js";
 import "./chunks/chunk-CPMHA4W5.js";
 import "./chunks/chunk-FYQWPEEY.js";
 export {

package/dist/gbzCut.js

@@ -4,7 +4,7 @@ import {
   haplotypeIndexBeside,
   openGbz,
   parseRegion
-} from "./chunks/chunk-FLFBYSJO.js";
+} from "./chunks/chunk-VQWHMWLF.js";
 import "./chunks/chunk-Q7LYHGGQ.js";
 import "./chunks/chunk-WSIFAZU7.js";
 import "./chunks/chunk-RAKOB6IV.js";