@jbrowse/bandage-core 10.0.0 → 10.0.1

package/dist/figureData.js

@@ -1,14 +1,12 @@
 import {
   figureData,
   gfaFigureData
-} from "./chunks/chunk-Q6IOQP4J.js";
-import "./chunks/chunk-VK6XMP6B.js";
-import "./chunks/chunk-Q6FRNVDU.js";
-import "./chunks/chunk-LYJ4US66.js";
-import "./chunks/chunk-ICXMWYOA.js";
+} from "./chunks/chunk-AZJF2PZE.js";
+import "./chunks/chunk-FLUQODT2.js";
+import "./chunks/chunk-IFOZFVZK.js";
+import "./chunks/chunk-LOEA5IHZ.js";
 import "./chunks/chunk-IM4SJUPO.js";
 import "./chunks/chunk-CWFNEKST.js";
-import "./chunks/chunk-LOEA5IHZ.js";
 import "./chunks/chunk-L3O7AWLI.js";
 import "./chunks/chunk-TZFWUT2C.js";
 import "./chunks/chunk-HNQPEMYE.js";
@@ -19,27 +17,27 @@ import "./chunks/chunk-FLFBYSJO.js";
 import "./chunks/chunk-Q7LYHGGQ.js";
 import "./chunks/chunk-WSIFAZU7.js";
 import "./chunks/chunk-LOCJN3BZ.js";
-import "./chunks/chunk-CDPYXHVR.js";
-import "./chunks/chunk-OOLNLCIO.js";
+import "./chunks/chunk-KY4LV2Z6.js";
+import "./chunks/chunk-QORSYW7J.js";
 import "./chunks/chunk-QIVPRZ4H.js";
 import "./chunks/chunk-VOWI544A.js";
 import "./chunks/chunk-2LQ5BWT7.js";
 import "./chunks/chunk-NP356MC2.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-WFB5TXRA.js";
-import "./chunks/chunk-3APK25GI.js";
-import "./chunks/chunk-KAN2WTG5.js";
+import "./chunks/chunk-3XE3OUEN.js";
+import "./chunks/chunk-A647OH7N.js";
 import "./chunks/chunk-REE4GUDM.js";
 import "./chunks/chunk-PBENCR5L.js";
-import "./chunks/chunk-W4GZCVUK.js";
+import "./chunks/chunk-MSX3BDO4.js";
 import "./chunks/chunk-IGVV37VI.js";
 import "./chunks/chunk-OPPVSPEF.js";
+import "./chunks/chunk-VPE4AYP7.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-QXAB2FLJ.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-PSMKPSO4.js";
 import "./chunks/chunk-CDLPYR5O.js";
-import "./chunks/chunk-JVLURPFW.js";
 import "./chunks/chunk-EMUUNWRU.js";
 import "./chunks/chunk-RAEABQNW.js";
 import "./chunks/chunk-ES2N6V56.js";

package/dist/figureSettings.js

@@ -1,16 +1,16 @@
 import {
   FIGURE_DEFAULTS,
   figureSpecSettings
-} from "./chunks/chunk-E5UEYZWK.js";
-import "./chunks/chunk-W4GZCVUK.js";
+} from "./chunks/chunk-ZR7A7DKQ.js";
+import "./chunks/chunk-MSX3BDO4.js";
 import "./chunks/chunk-IGVV37VI.js";
 import "./chunks/chunk-OPPVSPEF.js";
+import "./chunks/chunk-VPE4AYP7.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-QXAB2FLJ.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-PSMKPSO4.js";
 import "./chunks/chunk-CDLPYR5O.js";
-import "./chunks/chunk-JVLURPFW.js";
 import "./chunks/chunk-EMUUNWRU.js";
 import "./chunks/chunk-RAEABQNW.js";
 import "./chunks/chunk-ES2N6V56.js";

package/dist/index.js

@@ -1,27 +1,17 @@
 import {
   wheelZoomFactor
 } from "./chunks/chunk-TDQLINVI.js";
-import {
-  connectorAt,
-  drawLitConnector,
-  drawTubeMapConnectors,
-  tubeMapConnectors
-} from "./chunks/chunk-2ZT7ZF7A.js";
 import {
   drawTubeMap,
   drawTubeMapHighlight,
   tubeMapMismatchAt,
   tubeMapPicture,
   tubeMapTrackAt
-} from "./chunks/chunk-EU6FBTQF.js";
+} from "./chunks/chunk-HQ2AHRMH.js";
 import {
   tubeMapFrame,
   tubeMapNodeAt
 } from "./chunks/chunk-2CMYNW3E.js";
-import {
-  referenceKnots,
-  warpX
-} from "./chunks/chunk-HK5Y2YWV.js";
 import {
   drawTubeMapGenes,
   tubeMapGenes
@@ -30,18 +20,28 @@ import "./chunks/chunk-XXT2JCAC.js";
 import {
   tubeMapNodeColors
 } from "./chunks/chunk-OEPCRURR.js";
+import {
+  referenceKnots,
+  warpX
+} from "./chunks/chunk-HK5Y2YWV.js";
+import {
+  bundleRoutes
+} from "./chunks/chunk-FG762CCP.js";
+import {
+  connectorAt,
+  drawLitConnector,
+  drawTubeMapConnectors,
+  tubeMapConnectors
+} from "./chunks/chunk-2ZT7ZF7A.js";
 import {
   drawTubeMapRuler,
   referenceBoxes,
   rulerBoxes,
   tubeX
 } from "./chunks/chunk-BPRXQ2SS.js";
-import {
-  bundleRoutes
-} from "./chunks/chunk-FG762CCP.js";
 import {
   createForceLayoutCache
-} from "./chunks/chunk-33T67FPZ.js";
+} from "./chunks/chunk-CFNFT4RA.js";
 import {
   graphBubbles,
   superbubblesFromGraph
@@ -80,14 +80,14 @@ import {
 import {
   FIGURE_DEFAULTS,
   figureSpecSettings
-} from "./chunks/chunk-E5UEYZWK.js";
+} from "./chunks/chunk-ZR7A7DKQ.js";
 import {
   edgeHoverText,
   regionLabel
 } from "./chunks/chunk-AZFVORTC.js";
 import {
   figureSvg
-} from "./chunks/chunk-RJXPPYA7.js";
+} from "./chunks/chunk-FFFYXMOP.js";
 import {
   svgCanvas
 } from "./chunks/chunk-47DYCZOK.js";
@@ -103,6 +103,12 @@ import {
   walkStripFrame,
   walkStripLabelsTree
 } from "./chunks/chunk-WI7ZHJ27.js";
+import {
+  Canvas2DRenderer
+} from "./chunks/chunk-WBCOREDZ.js";
+import {
+  getDpr
+} from "./chunks/chunk-4BYTEJGW.js";
 import {
   BAR_PX,
   CALL_TICK,
@@ -130,12 +136,6 @@ import {
   walkRowsKeyTree,
   walkRowsTree
 } from "./chunks/chunk-VZNKA3K2.js";
-import {
-  Canvas2DRenderer
-} from "./chunks/chunk-WBCOREDZ.js";
-import {
-  getDpr
-} from "./chunks/chunk-4BYTEJGW.js";
 import {
   EXON_COLOR,
   exonOutlineTree,
@@ -168,24 +168,20 @@ import {
 import {
   figureData,
   gfaFigureData
-} from "./chunks/chunk-Q6IOQP4J.js";
+} from "./chunks/chunk-AZJF2PZE.js";
 import {
   LAYOUT_ENGINES,
   layoutEngine
-} from "./chunks/chunk-VK6XMP6B.js";
-import {
-  stressLayout
-} from "./chunks/chunk-Q6FRNVDU.js";
-import "./chunks/chunk-LYJ4US66.js";
+} from "./chunks/chunk-FLUQODT2.js";
 import {
   FORCE_LAYOUT_LABEL,
   LAYOUT_MODES,
   layoutModeByValue,
   modeUsesLayoutEngine
-} from "./chunks/chunk-ICXMWYOA.js";
+} from "./chunks/chunk-IFOZFVZK.js";
+import "./chunks/chunk-LOEA5IHZ.js";
 import "./chunks/chunk-IM4SJUPO.js";
 import "./chunks/chunk-CWFNEKST.js";
-import "./chunks/chunk-LOEA5IHZ.js";
 import "./chunks/chunk-L3O7AWLI.js";
 import "./chunks/chunk-TZFWUT2C.js";
 import "./chunks/chunk-HNQPEMYE.js";
@@ -215,7 +211,7 @@ import {
 } from "./chunks/chunk-LOCJN3BZ.js";
 import {
   version
-} from "./chunks/chunk-CDPYXHVR.js";
+} from "./chunks/chunk-KY4LV2Z6.js";
 import {
   axisScaleOf,
   contains,
@@ -223,7 +219,7 @@ import {
   screenToLayout,
   viewportOf,
   zoomAbout
-} from "./chunks/chunk-OOLNLCIO.js";
+} from "./chunks/chunk-QORSYW7J.js";
 import {
   facetLifts,
   walkHighlight,
@@ -252,11 +248,11 @@ import "./chunks/chunk-WFB5TXRA.js";
 import {
   walkRowLabels,
   walkRowsExtent
-} from "./chunks/chunk-3APK25GI.js";
+} from "./chunks/chunk-3XE3OUEN.js";
 import {
   filterSamples,
   walkRows
-} from "./chunks/chunk-KAN2WTG5.js";
+} from "./chunks/chunk-A647OH7N.js";
 import {
   pathColorsLegible,
   pathLegend,
@@ -281,9 +277,10 @@ import {
   forceLayout,
   layoutExtent,
   loadGraph
-} from "./chunks/chunk-W4GZCVUK.js";
+} from "./chunks/chunk-MSX3BDO4.js";
 import "./chunks/chunk-IGVV37VI.js";
 import "./chunks/chunk-OPPVSPEF.js";
+import "./chunks/chunk-VPE4AYP7.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-QXAB2FLJ.js";
 import "./chunks/chunk-QYBZZI5H.js";
@@ -292,7 +289,6 @@ import {
   graphTablesGFA
 } from "./chunks/chunk-PSMKPSO4.js";
 import "./chunks/chunk-CDLPYR5O.js";
-import "./chunks/chunk-JVLURPFW.js";
 import "./chunks/chunk-EMUUNWRU.js";
 import {
   PathVisits,
@@ -352,6 +348,9 @@ import {
   facetGrid,
   facetSettingOf
 } from "./chunks/chunk-XV4P5KEQ.js";
+
+// src/index.ts
+import { stressLayout } from "@jbrowse/graph-stress-layout";
 export {
   BUBBLE_KIND_COLORS,
   BUBBLE_KIND_NAMES,

package/dist/layout/deletionRoutes.js

@@ -1,11 +1,9 @@
 import {
-  ROUTE_ID,
   routeNodes,
   takeRoutes,
   withDeletionRoutes
-} from "../chunks/chunk-JVLURPFW.js";
+} from "../chunks/chunk-VPE4AYP7.js";
 export {
-  ROUTE_ID,
   routeNodes,
   takeRoutes,
   withDeletionRoutes

package/dist/layout/forceCache.js

@@ -1,15 +1,15 @@
 import {
   createForceLayoutCache
-} from "../chunks/chunk-33T67FPZ.js";
-import "../chunks/chunk-W4GZCVUK.js";
+} from "../chunks/chunk-CFNFT4RA.js";
+import "../chunks/chunk-MSX3BDO4.js";
 import "../chunks/chunk-IGVV37VI.js";
 import "../chunks/chunk-OPPVSPEF.js";
+import "../chunks/chunk-VPE4AYP7.js";
 import "../chunks/chunk-PUG7LXDF.js";
 import "../chunks/chunk-QXAB2FLJ.js";
 import "../chunks/chunk-QYBZZI5H.js";
 import "../chunks/chunk-PSMKPSO4.js";
 import "../chunks/chunk-CDLPYR5O.js";
-import "../chunks/chunk-JVLURPFW.js";
 import "../chunks/chunk-EMUUNWRU.js";
 import "../chunks/chunk-RAEABQNW.js";
 import "../chunks/chunk-ES2N6V56.js";

package/dist/layout/walkRowLayout.js

@@ -2,8 +2,8 @@ import {
   walkRowLabels,
   walkRowLayout,
   walkRowsExtent
-} from "../chunks/chunk-3APK25GI.js";
-import "../chunks/chunk-KAN2WTG5.js";
+} from "../chunks/chunk-3XE3OUEN.js";
+import "../chunks/chunk-A647OH7N.js";
 import "../chunks/chunk-EMUUNWRU.js";
 import "../chunks/chunk-RAEABQNW.js";
 import "../chunks/chunk-BPLIXMH7.js";

package/dist/layout/walkRows.js

@@ -1,7 +1,7 @@
 import {
   filterSamples,
   walkRows
-} from "../chunks/chunk-KAN2WTG5.js";
+} from "../chunks/chunk-A647OH7N.js";
 import "../chunks/chunk-EMUUNWRU.js";
 import "../chunks/chunk-RAEABQNW.js";
 import "../chunks/chunk-BPLIXMH7.js";

package/dist/layoutEngines.js

@@ -3,12 +3,8 @@ import {
   LAYOUT_ENGINE_VALUES,
   isLayoutEngineKind,
   layoutEngine
-} from "./chunks/chunk-VK6XMP6B.js";
-import "./chunks/chunk-Q6FRNVDU.js";
-import "./chunks/chunk-LYJ4US66.js";
+} from "./chunks/chunk-FLUQODT2.js";
 import "./chunks/chunk-7XHHVYG7.js";
-import "./chunks/chunk-JVLURPFW.js";
-import "./chunks/chunk-FYQWPEEY.js";
 export {
   LAYOUT_ENGINES,
   LAYOUT_ENGINE_VALUES,

package/dist/layoutModes.js

@@ -4,17 +4,17 @@ import {
   LAYOUT_MODE_VALUES,
   layoutModeByValue,
   modeUsesLayoutEngine
-} from "./chunks/chunk-ICXMWYOA.js";
+} from "./chunks/chunk-IFOZFVZK.js";
+import "./chunks/chunk-LOEA5IHZ.js";
 import "./chunks/chunk-IM4SJUPO.js";
 import "./chunks/chunk-CWFNEKST.js";
-import "./chunks/chunk-LOEA5IHZ.js";
 import "./chunks/chunk-L3O7AWLI.js";
 import "./chunks/chunk-TZFWUT2C.js";
 import "./chunks/chunk-HNQPEMYE.js";
 import "./chunks/chunk-C44YRP5F.js";
 import "./chunks/chunk-RVS2QCOX.js";
-import "./chunks/chunk-3APK25GI.js";
-import "./chunks/chunk-KAN2WTG5.js";
+import "./chunks/chunk-3XE3OUEN.js";
+import "./chunks/chunk-A647OH7N.js";
 import "./chunks/chunk-REE4GUDM.js";
 import "./chunks/chunk-EMUUNWRU.js";
 import "./chunks/chunk-RAEABQNW.js";

package/dist/pipeline.js

@@ -11,15 +11,15 @@ import {
   forceLayout,
   layoutExtent,
   loadGraph
-} from "./chunks/chunk-W4GZCVUK.js";
+} from "./chunks/chunk-MSX3BDO4.js";
 import "./chunks/chunk-IGVV37VI.js";
 import "./chunks/chunk-OPPVSPEF.js";
+import "./chunks/chunk-VPE4AYP7.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-QXAB2FLJ.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-PSMKPSO4.js";
 import "./chunks/chunk-CDLPYR5O.js";
-import "./chunks/chunk-JVLURPFW.js";
 import "./chunks/chunk-EMUUNWRU.js";
 import "./chunks/chunk-RAEABQNW.js";
 import "./chunks/chunk-ES2N6V56.js";

package/dist/tubeMap/draw.js

@@ -8,9 +8,9 @@ import {
   tubeMapMismatchAt,
   tubeMapPicture,
   tubeMapTrackAt
-} from "../chunks/chunk-EU6FBTQF.js";
-import "../chunks/chunk-HK5Y2YWV.js";
+} from "../chunks/chunk-HQ2AHRMH.js";
 import "../chunks/chunk-XXT2JCAC.js";
+import "../chunks/chunk-HK5Y2YWV.js";
 import "../chunks/chunk-CWFNEKST.js";
 import "../chunks/chunk-C44YRP5F.js";
 import "../chunks/chunk-EMUUNWRU.js";

package/dist/types/index.d.ts

@@ -18,7 +18,7 @@ export { BUBBLE_SPREADS } from './bubbleSpreads.js';
 export { LAYOUT_QUALITIES } from './layoutQualities.js';
 export type { LayoutQuality } from './layoutQualities.js';
 export type { BubbleSpread } from './bubbleSpreads.js';
-export { stressLayout } from './layout/stressEngine.js';
+export { stressLayout } from '@jbrowse/graph-stress-layout';
 export { LAYOUT_ENGINES, layoutEngine } from './layoutEngines.js';
 export type { LayoutEngineKind } from './layoutEngines.js';
 export { REFERENCE_RAMP_MAX_HUE, buildGeometry, computeReferenceRamp, } from './renderer/GeometryBuilder.js';

package/dist/types/layout/deletionRoutes.d.ts

@@ -1,7 +1,6 @@
 import type { BandageScaleOpts } from './drawnScale.js';
 import type { DeletionEdge } from '../deletionEdges.js';
 import type { Graph, GraphEdge, GraphNode, NodeSegment } from '../types.js';
-export declare const ROUTE_ID = "\0deletion:";
 export type DeletionRoutes = Record<number, NodeSegment[]>;
 export declare function withDeletionRoutes(graph: Graph, deletions: DeletionEdge[], dropped?: Set<number>): {
     graph: {

package/dist/types/version.d.ts

@@ -1 +1 @@
-export declare const version = "10.0.0";
+export declare const version = "10.0.1";

package/dist/version.js

@@ -1,6 +1,6 @@
 import {
   version
-} from "./chunks/chunk-CDPYXHVR.js";
+} from "./chunks/chunk-KY4LV2Z6.js";
 export {
   version
 };

package/dist/viewport.js

@@ -5,16 +5,16 @@ import {
   screenToLayout,
   viewportOf,
   zoomAbout
-} from "./chunks/chunk-OOLNLCIO.js";
-import "./chunks/chunk-W4GZCVUK.js";
+} from "./chunks/chunk-QORSYW7J.js";
+import "./chunks/chunk-MSX3BDO4.js";
 import "./chunks/chunk-IGVV37VI.js";
 import "./chunks/chunk-OPPVSPEF.js";
+import "./chunks/chunk-VPE4AYP7.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-QXAB2FLJ.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-PSMKPSO4.js";
 import "./chunks/chunk-CDLPYR5O.js";
-import "./chunks/chunk-JVLURPFW.js";
 import "./chunks/chunk-EMUUNWRU.js";
 import "./chunks/chunk-RAEABQNW.js";
 import "./chunks/chunk-ES2N6V56.js";

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/bandage-core",
-  "version": "10.0.0",
+  "version": "10.0.1",
   "description": "Pangenome graph layout and drawing with no host: GFA in, the Bandage force-directed engine and reference-anchored layouts, a Canvas2D renderer, hit testing and labels out",
   "license": "GPL-3.0-or-later",
   "repository": {
@@ -37,6 +37,7 @@
   "dependencies": {
     "@gmod/gbz-base": "^7.0.0",
     "@gmod/tabix": "^3.9.1",
+    "@jbrowse/graph-stress-layout": "^0.1.1",
     "@jbrowse/tubemap-core": "^0.2.4"
   },
   "devDependencies": {