@jbrowse/bandage-core 10.0.0 → 10.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (41) hide show
  1. package/README.md +20 -0
  2. package/dist/chunks/{chunk-3APK25GI.js → chunk-3XE3OUEN.js} +1 -1
  3. package/dist/chunks/chunk-A647OH7N.js +284 -0
  4. package/dist/chunks/{chunk-Q6IOQP4J.js → chunk-AZJF2PZE.js} +5 -5
  5. package/dist/chunks/{chunk-33T67FPZ.js → chunk-CFNFT4RA.js} +1 -1
  6. package/dist/chunks/{chunk-RJXPPYA7.js → chunk-FFFYXMOP.js} +7 -7
  7. package/dist/chunks/{chunk-VK6XMP6B.js → chunk-FLUQODT2.js} +1 -3
  8. package/dist/chunks/{chunk-ICXMWYOA.js → chunk-IFOZFVZK.js} +4 -4
  9. package/dist/chunks/{chunk-CDPYXHVR.js → chunk-KY4LV2Z6.js} +1 -1
  10. package/dist/chunks/{chunk-W4GZCVUK.js → chunk-MSX3BDO4.js} +5 -5
  11. package/dist/chunks/{chunk-OOLNLCIO.js → chunk-QORSYW7J.js} +1 -1
  12. package/dist/chunks/{chunk-JVLURPFW.js → chunk-VPE4AYP7.js} +1 -2
  13. package/dist/chunks/{chunk-E5UEYZWK.js → chunk-ZR7A7DKQ.js} +1 -1
  14. package/dist/cli/figure.js +12 -14
  15. package/dist/cli/fold.js +2 -2
  16. package/dist/figure.js +8 -8
  17. package/dist/figureData.js +10 -12
  18. package/dist/figureSettings.js +3 -3
  19. package/dist/index.js +36 -37
  20. package/dist/layout/deletionRoutes.js +1 -3
  21. package/dist/layout/forceCache.js +3 -3
  22. package/dist/layout/walkRowLayout.js +2 -2
  23. package/dist/layout/walkRows.js +1 -1
  24. package/dist/layoutEngines.js +1 -5
  25. package/dist/layoutModes.js +4 -4
  26. package/dist/pipeline.js +2 -2
  27. package/dist/tubeMap/draw.js +2 -2
  28. package/dist/types/index.d.ts +1 -1
  29. package/dist/types/layout/deletionRoutes.d.ts +0 -1
  30. package/dist/types/version.d.ts +1 -1
  31. package/dist/version.js +1 -1
  32. package/dist/viewport.js +3 -3
  33. package/package.json +2 -1
  34. package/dist/chunks/chunk-KAN2WTG5.js +0 -226
  35. package/dist/chunks/chunk-LYJ4US66.js +0 -664
  36. package/dist/chunks/chunk-Q6FRNVDU.js +0 -531
  37. package/dist/layout/stressEngine.js +0 -11
  38. package/dist/layout/stressPlacement.js +0 -7
  39. package/dist/types/layout/stressEngine.d.ts +0 -27
  40. package/dist/types/layout/stressPlacement.d.ts +0 -5
  41. package/dist/chunks/{chunk-EU6FBTQF.js → chunk-HQ2AHRMH.js} +3 -3
package/README.md CHANGED
@@ -57,6 +57,26 @@ Release with `pnpm version patch`: it lints, tests, stamps `src/version.ts`,
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  writes the changelog with git-cliff and pushes the `v*` tag, and `publish.yml`
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  publishes to npm with trusted publishing.
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59
 
60
+ ## See also
61
+
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+ - [jbrowse-plugin-graphgenomeviewer](https://github.com/GMOD/jbrowse-plugin-graphgenomeviewer) -
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+ JBrowse 2 plugin that browses these graphs by locus
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+ - [BandageJS](https://github.com/cmdcolin/BandageJS) - standalone page for GFA
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+ and gbz-base graphs
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+ - [@jbrowse/graph-stress-layout](https://github.com/GMOD/graph-stress-layout) -
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+ stress layout that keeps the reference straight
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+ - [@gmod/gbz-base](https://github.com/GMOD/gbz-base-js) - range-request reader
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+ for `.gbz.db` databases
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+ - [ggbandage](https://github.com/GMOD/ggbandage) - Bandage-style graph figures
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+ as ggplot2 layers
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+ - [@jbrowse/tubemap-core](https://github.com/GMOD/tubemap-core) -
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+ sequenceTubeMap's layout, without the DOM
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+
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+ Tutorials on [jbrowse.org](https://jbrowse.org/jb2/docs/tutorials/)
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+
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+ - [HPRC part 1: graph alleles and haplotypes](https://jbrowse.org/jb2/docs/tutorials/pangenome_hprc/)
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+ - [HPRC part 3: repeat lengths](https://jbrowse.org/jb2/docs/tutorials/pangenome_hprc_repeats/)
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+
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  ## License
61
81
 
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  Both Bandage and OGDF are GPL, which is why this package is GPL-3.0-or-later.
@@ -1,6 +1,6 @@
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1
  import {
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  walkRows
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- } from "./chunk-KAN2WTG5.js";
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+ } from "./chunk-A647OH7N.js";
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  import {
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  ROW_HEIGHT_PX
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  } from "./chunk-CPMHA4W5.js";
@@ -0,0 +1,284 @@
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+ import {
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+ pathOrigin
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+ } from "./chunk-EMUUNWRU.js";
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+ import {
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+ panSNContig,
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+ panSNSample
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+ } from "./chunk-BPLIXMH7.js";
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+
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+ // src/layout/walkRows.ts
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+ function sampleOf(path) {
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+ return path.sample ?? panSNSample(path.name);
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+ }
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+ function labelOf(path) {
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+ return path.haplotype !== void 0 && path.sample !== void 0 ? `${path.sample}#${path.haplotype}` : sampleOf(path);
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+ }
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+ var NodeTable = class {
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+ constructor(graph) {
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+ this.index = /* @__PURE__ */ new Map();
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+ this.lengths = [];
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+ this.onReference = new Uint8Array(0);
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+ this.referenceStart = new Float64Array(0);
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+ this.referenceEnd = new Float64Array(0);
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+ for (const node of graph.nodes) {
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+ this.lengths[this.indexOf(node.id)] = node.length;
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+ }
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+ }
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+ indexOf(id) {
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+ let i = this.index.get(id);
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+ if (i === void 0) {
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+ i = this.lengths.length;
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+ this.index.set(id, i);
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+ this.lengths.push(0);
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+ }
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+ return i;
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+ }
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+ nodesOf(path) {
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+ const nodes = new Int32Array(path.nodeIds.length);
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+ path.nodeIds.forEach((id, k) => {
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+ nodes[k] = this.indexOf(id);
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+ });
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+ return nodes;
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+ }
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+ spanAt(steps, k) {
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+ const node = k >= 0 && k < steps.length ? steps[k] : -1;
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+ return node >= 0 && this.onReference[node] ? { start: this.referenceStart[node], end: this.referenceEnd[node] } : void 0;
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+ }
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+ };
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+ function stepsOf(pieces, table) {
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+ const out = [];
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+ let end;
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+ for (const piece of pieces) {
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+ if (end !== void 0 && piece.start !== void 0 && piece.start > end) {
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+ out.push(end - piece.start);
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+ }
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+ let bp = 0;
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+ for (const node of piece.nodes) {
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+ out.push(node);
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+ bp += table.lengths[node];
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+ }
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+ end = piece.start === void 0 ? void 0 : piece.start + bp;
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+ }
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+ return Float64Array.from(out);
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+ }
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+ function stepSpan(pieces, table, k) {
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+ let end;
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+ let at = 0;
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+ let found;
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+ for (const piece of pieces) {
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+ if (piece.start === void 0 || end !== void 0 && piece.start < end) {
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+ return void 0;
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+ }
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+ if (end !== void 0 && piece.start > end) {
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+ if (at++ === k) {
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+ found = { start: end, end: piece.start };
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+ }
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+ }
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+ let pos = piece.start;
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+ for (const node of piece.nodes) {
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+ const len = table.lengths[node];
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+ if (at++ === k) {
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+ found = { start: pos, end: pos + len };
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+ }
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+ pos += len;
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+ }
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+ end = pos;
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+ }
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+ return found;
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+ }
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+ function sliceBetween(steps, table, region, flanked = true) {
90
+ if (!region || !flanked) {
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+ return { ids: steps, complete: true, from: -1, to: -1 };
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+ }
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+ const { onReference, referenceStart, referenceEnd } = table;
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+ let i0 = -1;
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+ let i1 = -1;
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+ let bestEnd = -Infinity;
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+ let bestStart = Infinity;
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+ for (let i = 0; i < steps.length; i++) {
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+ const node = steps[i];
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+ if (node >= 0 && onReference[node]) {
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+ const end2 = referenceEnd[node];
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+ const start = referenceStart[node];
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+ if (end2 <= region.start && end2 > bestEnd) {
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+ bestEnd = end2;
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+ i0 = i;
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+ }
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+ if (start >= region.end && start < bestStart) {
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+ bestStart = start;
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+ i1 = i;
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+ }
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+ }
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+ }
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+ if (i0 >= 0 && i1 >= 0) {
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+ const ids2 = steps.slice(Math.min(i0, i1) + 1, Math.max(i0, i1));
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+ return {
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+ ids: i0 < i1 ? ids2 : ids2.reverse(),
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+ complete: true,
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+ from: i0,
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+ to: i1
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+ };
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+ }
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+ const spanAt = (k) => table.spanAt(steps, k);
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+ const flank = i0 >= 0 ? i0 : i1;
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+ let near = -1;
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+ for (let d = 1; flank >= 0 && near < 0 && d < steps.length; d++) {
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+ near = [flank - d, flank + d].find((j) => spanAt(j) !== void 0) ?? -1;
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+ }
128
+ if (near < 0) {
129
+ return { ids: steps, complete: false, from: -1, to: -1 };
130
+ }
131
+ const forward = near > flank === spanAt(near).start > spanAt(flank).start;
132
+ const after = forward === (flank === i0);
133
+ const ids = after ? steps.slice(flank + 1) : steps.slice(0, flank).reverse();
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+ const last = ids.length > 0 ? ids.length - 1 : -1;
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+ const end = last < 0 ? spanAt(flank) : spanAt(after ? flank + 1 + last : 0);
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+ const stop = {
137
+ contigEnds: end !== void 0,
138
+ shortBp: !end ? 0 : Math.max(0, region.start - end.end, end.start - region.end)
139
+ };
140
+ return {
141
+ ids,
142
+ complete: false,
143
+ from: flank,
144
+ to: after ? steps.length : -1,
145
+ stop
146
+ };
147
+ }
148
+ function filterSamples(rows, samples) {
149
+ return samples ? rows.filter((r) => samples.includes(r.sample)).sort(
150
+ (a, b) => samples.indexOf(a.sample) - samples.indexOf(b.sample) || a.label.localeCompare(b.label)
151
+ ) : rows;
152
+ }
153
+ function walkRows(graph, region, unit) {
154
+ const paths = graph.paths ?? [];
155
+ const isReference = (p) => pathOrigin(p.name).name === graph.referencePath;
156
+ const referencePieces = paths.some(isReference) ? paths.filter(isReference).sort((a, b) => (a.start ?? 0) - (b.start ?? 0)) : paths.slice(0, 1);
157
+ const first = referencePieces[0];
158
+ const others = paths.filter((p) => !referencePieces.includes(p));
159
+ if (!first || others.length === 0) {
160
+ return void 0;
161
+ }
162
+ const walks = /* @__PURE__ */ new Map();
163
+ for (const path of others) {
164
+ const pieces = walks.get(path.name);
165
+ if (pieces) {
166
+ pieces.push(path);
167
+ } else {
168
+ walks.set(path.name, [path]);
169
+ }
170
+ }
171
+ const table = new NodeTable(graph);
172
+ const referenceStart = first.start ?? 0;
173
+ const cut = region && region.end > region.start ? region : void 0;
174
+ const referenceNodes = referencePieces.map((piece) => table.nodesOf(piece));
175
+ const nodeCount = table.lengths.length;
176
+ table.onReference = new Uint8Array(nodeCount);
177
+ table.referenceStart = new Float64Array(nodeCount);
178
+ table.referenceEnd = new Float64Array(nodeCount);
179
+ let reachesBefore = false;
180
+ let reachesAfter = false;
181
+ for (const [p, piece] of referencePieces.entries()) {
182
+ let pos = piece.start ?? 0;
183
+ for (const node of referenceNodes[p]) {
184
+ const len = table.lengths[node];
185
+ if (!table.onReference[node]) {
186
+ table.onReference[node] = 1;
187
+ table.referenceStart[node] = pos;
188
+ table.referenceEnd[node] = pos + len;
189
+ reachesBefore ||= cut !== void 0 && pos + len <= cut.start;
190
+ reachesAfter ||= cut !== void 0 && pos >= cut.end;
191
+ }
192
+ pos += len;
193
+ }
194
+ }
195
+ const flanked = cut === void 0 || reachesBefore && reachesAfter;
196
+ const rowOf = (paths2, nodes) => {
197
+ const path = paths2[0];
198
+ const pieces = paths2.map((piece, p) => ({
199
+ start: piece.start,
200
+ nodes: nodes?.[p] ?? table.nodesOf(piece)
201
+ })).sort((a, b) => (a.start ?? 0) - (b.start ?? 0));
202
+ const { ids, complete, from, to, stop } = sliceBetween(
203
+ stepsOf(pieces, table),
204
+ table,
205
+ cut,
206
+ flanked
207
+ );
208
+ const contig = path.contig ?? panSNContig(pathOrigin(path.name).name);
209
+ const axisSpan = stepSpan(pieces, table, from < 0 ? 0 : from);
210
+ const axis = !axisSpan ? void 0 : from < 0 ? { contig, start: axisSpan.start, reversed: false } : from < to ? { contig, start: axisSpan.end, reversed: false } : { contig, start: axisSpan.start, reversed: true };
211
+ const { lengths, onReference, referenceStart: referenceStart2, referenceEnd } = table;
212
+ const runs = [];
213
+ let last;
214
+ let bp = 0;
215
+ let offReferenceBp = 0;
216
+ let gapBp = 0;
217
+ let step = 0;
218
+ for (const node of ids) {
219
+ if (node < 0) {
220
+ last = { start: bp, bp: -node, onReference: false, gap: true };
221
+ runs.push(last);
222
+ bp -= node;
223
+ gapBp -= node;
224
+ step = 0;
225
+ continue;
226
+ }
227
+ const len = lengths[node];
228
+ const on = onReference[node] === 1;
229
+ const at = last?.referenceStart;
230
+ const forward = on && at !== void 0 && step >= 0 && at + last.bp === referenceStart2[node];
231
+ const backward = on && at !== void 0 && step <= 0 && referenceEnd[node] === at;
232
+ if (!on && last && !last.onReference && !last.gap) {
233
+ last.bp += len;
234
+ } else if (forward || backward) {
235
+ last.bp += len;
236
+ if (!forward) {
237
+ last.referenceStart = referenceStart2[node];
238
+ last.reversed = true;
239
+ }
240
+ step = forward ? 1 : -1;
241
+ } else {
242
+ last = {
243
+ start: bp,
244
+ bp: len,
245
+ onReference: on,
246
+ referenceStart: on ? referenceStart2[node] : void 0
247
+ };
248
+ runs.push(last);
249
+ step = 0;
250
+ }
251
+ bp += len;
252
+ if (!on) {
253
+ offReferenceBp += len;
254
+ }
255
+ }
256
+ return {
257
+ name: path.name,
258
+ label: labelOf(path),
259
+ sample: sampleOf(path),
260
+ haplotype: path.haplotype,
261
+ bp,
262
+ offReferenceBp,
263
+ gapBp,
264
+ complete,
265
+ stop,
266
+ runs,
267
+ axis
268
+ };
269
+ };
270
+ const origin = cut ? cut.start : referenceStart;
271
+ return {
272
+ origin,
273
+ unit,
274
+ reference: rowOf(referencePieces, referenceNodes),
275
+ rows: [...walks.values()].map((paths2) => rowOf(paths2)).sort(
276
+ (a, b) => Number(b.complete) - Number(a.complete) || b.bp - a.bp || a.label.localeCompare(b.label)
277
+ )
278
+ };
279
+ }
280
+
281
+ export {
282
+ filterSamples,
283
+ walkRows
284
+ };
@@ -1,9 +1,9 @@
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1
  import {
2
2
  layoutEngine
3
- } from "./chunk-VK6XMP6B.js";
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+ } from "./chunk-FLUQODT2.js";
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  import {
5
5
  layoutModeByValue
6
- } from "./chunk-ICXMWYOA.js";
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+ } from "./chunk-IFOZFVZK.js";
7
7
  import {
8
8
  parseRegion
9
9
  } from "./chunk-FLFBYSJO.js";
@@ -12,10 +12,10 @@ import {
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  } from "./chunk-LOCJN3BZ.js";
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  import {
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  version
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- } from "./chunk-CDPYXHVR.js";
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+ } from "./chunk-KY4LV2Z6.js";
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  import {
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  axisScaleOf
18
- } from "./chunk-OOLNLCIO.js";
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+ } from "./chunk-QORSYW7J.js";
19
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  import {
20
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  facetLifts,
21
21
  walkLift
@@ -43,7 +43,7 @@ import {
43
43
  fitTransform,
44
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  forceLayout,
45
45
  loadGraph
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- } from "./chunk-W4GZCVUK.js";
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+ } from "./chunk-MSX3BDO4.js";
47
47
  import {
48
48
  referenceLabel
49
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  } from "./chunk-RAKOB6IV.js";
@@ -1,7 +1,7 @@
1
1
  import {
2
2
  engineKey,
3
3
  forceLayout
4
- } from "./chunk-W4GZCVUK.js";
4
+ } from "./chunk-MSX3BDO4.js";
5
5
 
6
6
  // src/layout/forceCache.ts
7
7
  var DEFAULT_SIZE = 4;
@@ -6,14 +6,14 @@ import {
6
6
  walkStripFrame,
7
7
  walkStripLabelsTree
8
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  } from "./chunk-WI7ZHJ27.js";
9
+ import {
10
+ Canvas2DRenderer
11
+ } from "./chunk-WBCOREDZ.js";
9
12
  import {
10
13
  walkRowsKey,
11
14
  walkRowsKeyTree,
12
15
  walkRowsTree
13
16
  } from "./chunk-VZNKA3K2.js";
14
- import {
15
- Canvas2DRenderer
16
- } from "./chunk-WBCOREDZ.js";
17
17
  import {
18
18
  EXON_COLOR,
19
19
  exonOutlineTree,
@@ -36,10 +36,10 @@ import {
36
36
  } from "./chunk-LOCJN3BZ.js";
37
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  import {
38
38
  version
39
- } from "./chunk-CDPYXHVR.js";
39
+ } from "./chunk-KY4LV2Z6.js";
40
40
  import {
41
41
  axisScaleOf
42
- } from "./chunk-OOLNLCIO.js";
42
+ } from "./chunk-QORSYW7J.js";
43
43
  import {
44
44
  facetLifts,
45
45
  walkLift
@@ -58,7 +58,7 @@ import {
58
58
  import {
59
59
  walkRowLabels,
60
60
  walkRowsExtent
61
- } from "./chunk-3APK25GI.js";
61
+ } from "./chunk-3XE3OUEN.js";
62
62
  import {
63
63
  pathLegend,
64
64
  walkLabelsOf
@@ -70,7 +70,7 @@ import {
70
70
  FIT_PADDING,
71
71
  drawingBounds,
72
72
  fitTransform
73
- } from "./chunk-W4GZCVUK.js";
73
+ } from "./chunk-MSX3BDO4.js";
74
74
  import {
75
75
  referenceLabel
76
76
  } from "./chunk-RAKOB6IV.js";
@@ -1,11 +1,9 @@
1
- import {
2
- stressLayout
3
- } from "./chunk-Q6FRNVDU.js";
4
1
  import {
5
2
  loadBandage
6
3
  } from "./chunk-7XHHVYG7.js";
7
4
 
8
5
  // src/layoutEngines.ts
6
+ import { stressLayout } from "@jbrowse/graph-stress-layout";
9
7
  var LAYOUT_ENGINES = [
10
8
  {
11
9
  value: "fmmm",
@@ -1,12 +1,12 @@
1
+ import {
2
+ sampleRowLayout
3
+ } from "./chunk-LOEA5IHZ.js";
1
4
  import {
2
5
  hasTubeMapBackbone,
3
6
  hasTubeMapPaths,
4
7
  tubeMapLayout,
5
8
  tubeMapReferenceLayout
6
9
  } from "./chunk-IM4SJUPO.js";
7
- import {
8
- sampleRowLayout
9
- } from "./chunk-LOEA5IHZ.js";
10
10
  import {
11
11
  anchoredLayout
12
12
  } from "./chunk-L3O7AWLI.js";
@@ -15,7 +15,7 @@ import {
15
15
  } from "./chunk-HNQPEMYE.js";
16
16
  import {
17
17
  walkRowLayout
18
- } from "./chunk-3APK25GI.js";
18
+ } from "./chunk-3XE3OUEN.js";
19
19
  import {
20
20
  isBackbone,
21
21
  isOffReference
@@ -1,5 +1,5 @@
1
1
  // src/version.ts
2
- var version = "10.0.0";
2
+ var version = "10.0.1";
3
3
 
4
4
  export {
5
5
  version
@@ -4,6 +4,11 @@ import {
4
4
  import {
5
5
  smoothChain
6
6
  } from "./chunk-OPPVSPEF.js";
7
+ import {
8
+ routeNodes,
9
+ takeRoutes,
10
+ withDeletionRoutes
11
+ } from "./chunk-VPE4AYP7.js";
7
12
  import {
8
13
  orientToReference
9
14
  } from "./chunk-PUG7LXDF.js";
@@ -16,11 +21,6 @@ import {
16
21
  import {
17
22
  parseGFA
18
23
  } from "./chunk-CDLPYR5O.js";
19
- import {
20
- routeNodes,
21
- takeRoutes,
22
- withDeletionRoutes
23
- } from "./chunk-JVLURPFW.js";
24
24
  import {
25
25
  anchorGraph
26
26
  } from "./chunk-EMUUNWRU.js";
@@ -1,6 +1,6 @@
1
1
  import {
2
2
  clampZoom
3
- } from "./chunk-W4GZCVUK.js";
3
+ } from "./chunk-MSX3BDO4.js";
4
4
 
5
5
  // src/viewport.ts
6
6
  function axisScaleOf(scale, pixelRows) {
@@ -1,5 +1,5 @@
1
1
  // src/layout/deletionRoutes.ts
2
- var ROUTE_ID = "\0deletion:";
2
+ import { ROUTE_ID } from "@jbrowse/graph-stress-layout";
3
3
  var ROUTE_FRACTION = 0.5;
4
4
  function withDeletionRoutes(graph, deletions, dropped = /* @__PURE__ */ new Set()) {
5
5
  const routes = new Map(
@@ -73,7 +73,6 @@ function takeRoutes(positions, routes) {
73
73
  }
74
74
 
75
75
  export {
76
- ROUTE_ID,
77
76
  withDeletionRoutes,
78
77
  routeNodes,
79
78
  takeRoutes
@@ -1,6 +1,6 @@
1
1
  import {
2
2
  ENGINE_DEFAULTS
3
- } from "./chunk-W4GZCVUK.js";
3
+ } from "./chunk-MSX3BDO4.js";
4
4
 
5
5
  // src/figureSettings.ts
6
6
  var FIGURE_DEFAULTS = {
@@ -6,15 +6,15 @@ import {
6
6
  } from "../chunks/chunk-BXEPA4KS.js";
7
7
  import {
8
8
  figureSvg
9
- } from "../chunks/chunk-RJXPPYA7.js";
9
+ } from "../chunks/chunk-FFFYXMOP.js";
10
10
  import "../chunks/chunk-47DYCZOK.js";
11
11
  import "../chunks/chunk-WI7ZHJ27.js";
12
+ import "../chunks/chunk-WBCOREDZ.js";
13
+ import "../chunks/chunk-4BYTEJGW.js";
12
14
  import {
13
15
  genesOnRow,
14
16
  placeRowGenes
15
17
  } from "../chunks/chunk-VZNKA3K2.js";
16
- import "../chunks/chunk-WBCOREDZ.js";
17
- import "../chunks/chunk-4BYTEJGW.js";
18
18
  import "../chunks/chunk-3S3YVOJ7.js";
19
19
  import "../chunks/chunk-BUBZ32IC.js";
20
20
  import "../chunks/chunk-DCJC32QW.js";
@@ -26,16 +26,14 @@ import {
26
26
  LAYOUT_ENGINE_VALUES,
27
27
  isLayoutEngineKind,
28
28
  layoutEngine
29
- } from "../chunks/chunk-VK6XMP6B.js";
30
- import "../chunks/chunk-Q6FRNVDU.js";
31
- import "../chunks/chunk-LYJ4US66.js";
29
+ } from "../chunks/chunk-FLUQODT2.js";
32
30
  import {
33
31
  LAYOUT_MODES,
34
32
  layoutModeByValue
35
- } from "../chunks/chunk-ICXMWYOA.js";
33
+ } from "../chunks/chunk-IFOZFVZK.js";
34
+ import "../chunks/chunk-LOEA5IHZ.js";
36
35
  import "../chunks/chunk-IM4SJUPO.js";
37
36
  import "../chunks/chunk-CWFNEKST.js";
38
- import "../chunks/chunk-LOEA5IHZ.js";
39
37
  import "../chunks/chunk-L3O7AWLI.js";
40
38
  import "../chunks/chunk-TZFWUT2C.js";
41
39
  import "../chunks/chunk-HNQPEMYE.js";
@@ -52,34 +50,34 @@ import {
52
50
  import "../chunks/chunk-Q7LYHGGQ.js";
53
51
  import "../chunks/chunk-WSIFAZU7.js";
54
52
  import "../chunks/chunk-LOCJN3BZ.js";
55
- import "../chunks/chunk-CDPYXHVR.js";
56
- import "../chunks/chunk-OOLNLCIO.js";
53
+ import "../chunks/chunk-KY4LV2Z6.js";
54
+ import "../chunks/chunk-QORSYW7J.js";
57
55
  import "../chunks/chunk-QIVPRZ4H.js";
58
56
  import "../chunks/chunk-VOWI544A.js";
59
57
  import "../chunks/chunk-2LQ5BWT7.js";
60
58
  import "../chunks/chunk-NP356MC2.js";
61
59
  import "../chunks/chunk-G2FD7S3C.js";
62
60
  import "../chunks/chunk-WFB5TXRA.js";
63
- import "../chunks/chunk-3APK25GI.js";
61
+ import "../chunks/chunk-3XE3OUEN.js";
64
62
  import {
65
63
  filterSamples,
66
64
  walkRows
67
- } from "../chunks/chunk-KAN2WTG5.js";
65
+ } from "../chunks/chunk-A647OH7N.js";
68
66
  import "../chunks/chunk-REE4GUDM.js";
69
67
  import "../chunks/chunk-PBENCR5L.js";
70
68
  import {
71
69
  engineSettingsOf,
72
70
  forceLayout,
73
71
  loadGraph
74
- } from "../chunks/chunk-W4GZCVUK.js";
72
+ } from "../chunks/chunk-MSX3BDO4.js";
75
73
  import "../chunks/chunk-IGVV37VI.js";
76
74
  import "../chunks/chunk-OPPVSPEF.js";
75
+ import "../chunks/chunk-VPE4AYP7.js";
77
76
  import "../chunks/chunk-PUG7LXDF.js";
78
77
  import "../chunks/chunk-QXAB2FLJ.js";
79
78
  import "../chunks/chunk-QYBZZI5H.js";
80
79
  import "../chunks/chunk-PSMKPSO4.js";
81
80
  import "../chunks/chunk-CDLPYR5O.js";
82
- import "../chunks/chunk-JVLURPFW.js";
83
81
  import "../chunks/chunk-EMUUNWRU.js";
84
82
  import "../chunks/chunk-RAEABQNW.js";
85
83
  import "../chunks/chunk-ES2N6V56.js";
package/dist/cli/fold.js CHANGED
@@ -7,15 +7,15 @@ import {
7
7
  } from "../chunks/chunk-B4645SM2.js";
8
8
  import {
9
9
  loadGraph
10
- } from "../chunks/chunk-W4GZCVUK.js";
10
+ } from "../chunks/chunk-MSX3BDO4.js";
11
11
  import "../chunks/chunk-IGVV37VI.js";
12
12
  import "../chunks/chunk-OPPVSPEF.js";
13
+ import "../chunks/chunk-VPE4AYP7.js";
13
14
  import "../chunks/chunk-PUG7LXDF.js";
14
15
  import "../chunks/chunk-QXAB2FLJ.js";
15
16
  import "../chunks/chunk-QYBZZI5H.js";
16
17
  import "../chunks/chunk-PSMKPSO4.js";
17
18
  import "../chunks/chunk-CDLPYR5O.js";
18
- import "../chunks/chunk-JVLURPFW.js";
19
19
  import "../chunks/chunk-EMUUNWRU.js";
20
20
  import "../chunks/chunk-RAEABQNW.js";
21
21
  import "../chunks/chunk-ES2N6V56.js";
package/dist/figure.js CHANGED
@@ -1,11 +1,11 @@
1
1
  import {
2
2
  figureSvg
3
- } from "./chunks/chunk-RJXPPYA7.js";
3
+ } from "./chunks/chunk-FFFYXMOP.js";
4
4
  import "./chunks/chunk-47DYCZOK.js";
5
5
  import "./chunks/chunk-WI7ZHJ27.js";
6
- import "./chunks/chunk-VZNKA3K2.js";
7
6
  import "./chunks/chunk-WBCOREDZ.js";
8
7
  import "./chunks/chunk-4BYTEJGW.js";
8
+ import "./chunks/chunk-VZNKA3K2.js";
9
9
  import "./chunks/chunk-3S3YVOJ7.js";
10
10
  import "./chunks/chunk-BUBZ32IC.js";
11
11
  import "./chunks/chunk-DCJC32QW.js";
@@ -14,27 +14,27 @@ import "./chunks/chunk-FP4H7SFT.js";
14
14
  import "./chunks/chunk-MLSWIMZO.js";
15
15
  import "./chunks/chunk-NNODIW4U.js";
16
16
  import "./chunks/chunk-LOCJN3BZ.js";
17
- import "./chunks/chunk-CDPYXHVR.js";
18
- import "./chunks/chunk-OOLNLCIO.js";
17
+ import "./chunks/chunk-KY4LV2Z6.js";
18
+ import "./chunks/chunk-QORSYW7J.js";
19
19
  import "./chunks/chunk-QIVPRZ4H.js";
20
20
  import "./chunks/chunk-VOWI544A.js";
21
21
  import "./chunks/chunk-2LQ5BWT7.js";
22
22
  import "./chunks/chunk-NP356MC2.js";
23
23
  import "./chunks/chunk-G2FD7S3C.js";
24
24
  import "./chunks/chunk-WFB5TXRA.js";
25
- import "./chunks/chunk-3APK25GI.js";
26
- import "./chunks/chunk-KAN2WTG5.js";
25
+ import "./chunks/chunk-3XE3OUEN.js";
26
+ import "./chunks/chunk-A647OH7N.js";
27
27
  import "./chunks/chunk-REE4GUDM.js";
28
28
  import "./chunks/chunk-PBENCR5L.js";
29
- import "./chunks/chunk-W4GZCVUK.js";
29
+ import "./chunks/chunk-MSX3BDO4.js";
30
30
  import "./chunks/chunk-IGVV37VI.js";
31
31
  import "./chunks/chunk-OPPVSPEF.js";
32
+ import "./chunks/chunk-VPE4AYP7.js";
32
33
  import "./chunks/chunk-PUG7LXDF.js";
33
34
  import "./chunks/chunk-QXAB2FLJ.js";
34
35
  import "./chunks/chunk-QYBZZI5H.js";
35
36
  import "./chunks/chunk-PSMKPSO4.js";
36
37
  import "./chunks/chunk-CDLPYR5O.js";
37
- import "./chunks/chunk-JVLURPFW.js";
38
38
  import "./chunks/chunk-EMUUNWRU.js";
39
39
  import "./chunks/chunk-RAEABQNW.js";
40
40
  import "./chunks/chunk-ES2N6V56.js";