@jbrowse/app-core 3.7.0 → 4.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (135) hide show
  1. package/esm/AppFocus/index.d.ts +3 -3
  2. package/esm/AppFocus/index.js +1 -1
  3. package/esm/Assemblies/SessionAssembliesMixin.d.ts +47 -22
  4. package/esm/Assemblies/SessionAssembliesMixin.js +11 -1
  5. package/esm/Assemblies/TemporaryAssembliesMixin.d.ts +5 -3
  6. package/esm/Assemblies/TemporaryAssembliesMixin.js +11 -1
  7. package/esm/Assemblies/index.d.ts +2 -2
  8. package/esm/Assemblies/index.js +2 -2
  9. package/esm/DockviewLayout/index.d.ts +26 -0
  10. package/esm/DockviewLayout/index.js +107 -0
  11. package/esm/HistoryManagement/index.d.ts +7 -7
  12. package/esm/HistoryManagement/index.js +5 -6
  13. package/esm/JBrowseConfig/RootConfiguration.d.ts +15 -15
  14. package/esm/JBrowseConfig/index.d.ts +35 -25
  15. package/esm/JBrowseConfig/index.js +3 -3
  16. package/esm/JBrowseModel/index.d.ts +52 -34
  17. package/esm/JBrowseModel/index.js +15 -6
  18. package/esm/RootMenu/index.d.ts +3 -3
  19. package/esm/RootMenu/index.js +1 -1
  20. package/esm/index.d.ts +9 -8
  21. package/esm/index.js +9 -8
  22. package/esm/ui/App/App.d.ts +1 -1
  23. package/esm/ui/App/App.js +8 -8
  24. package/esm/ui/App/AppFab.js +2 -2
  25. package/esm/ui/App/AppToolbar.d.ts +1 -1
  26. package/esm/ui/App/AppToolbar.js +17 -3
  27. package/esm/ui/App/ClassicViewsContainer.d.ts +12 -0
  28. package/esm/ui/App/ClassicViewsContainer.js +21 -0
  29. package/esm/ui/App/DialogQueue.d.ts +2 -2
  30. package/esm/ui/App/DialogQueue.js +1 -1
  31. package/esm/ui/App/DockviewContext.d.ts +15 -0
  32. package/esm/ui/App/DockviewContext.js +21 -0
  33. package/esm/ui/App/DockviewLeftHeaderActions.d.ts +2 -0
  34. package/esm/ui/App/DockviewLeftHeaderActions.js +58 -0
  35. package/esm/ui/App/DockviewRightHeaderActions.d.ts +2 -0
  36. package/esm/ui/App/DockviewRightHeaderActions.js +100 -0
  37. package/esm/ui/App/Drawer.js +4 -5
  38. package/esm/ui/App/DrawerControls.js +1 -1
  39. package/esm/ui/App/DrawerHeader.js +16 -8
  40. package/{dist/ui/App/Drawer.d.ts → esm/ui/App/DrawerHeaderHelpButton.d.ts} +3 -3
  41. package/esm/ui/App/DrawerHeaderHelpButton.js +18 -0
  42. package/esm/ui/App/DrawerHeaderHelpDialog.d.ts +4 -0
  43. package/esm/ui/App/DrawerHeaderHelpDialog.js +15 -0
  44. package/esm/ui/App/DrawerWidget.js +4 -4
  45. package/esm/ui/App/DrawerWidgetSelector.js +3 -3
  46. package/esm/ui/App/JBrowseTabMenu.d.ts +5 -0
  47. package/esm/ui/App/JBrowseTabMenu.js +39 -0
  48. package/esm/ui/App/JBrowseViewPanel.d.ts +8 -0
  49. package/esm/ui/App/JBrowseViewPanel.js +49 -0
  50. package/esm/ui/App/JBrowseViewTab.d.ts +8 -0
  51. package/esm/ui/App/JBrowseViewTab.js +106 -0
  52. package/esm/ui/App/ModalWidget.js +3 -3
  53. package/esm/ui/App/TiledViewsContainer.d.ts +7 -0
  54. package/esm/ui/App/TiledViewsContainer.js +251 -0
  55. package/{dist/ui/App/ViewHeader.d.ts → esm/ui/App/ViewButtons.d.ts} +2 -3
  56. package/esm/ui/App/ViewButtons.js +17 -0
  57. package/esm/ui/App/ViewContainer.js +7 -8
  58. package/esm/ui/App/ViewContainerTitle.js +3 -4
  59. package/esm/ui/App/ViewHeader.js +7 -16
  60. package/esm/ui/App/ViewLauncher.d.ts +1 -1
  61. package/esm/ui/App/ViewLauncher.js +3 -4
  62. package/esm/ui/App/ViewMenu.d.ts +1 -1
  63. package/esm/ui/App/ViewMenu.js +113 -54
  64. package/esm/ui/App/ViewWrapper.js +1 -1
  65. package/esm/ui/App/ViewsContainer.d.ts +2 -2
  66. package/esm/ui/App/ViewsContainer.js +8 -6
  67. package/esm/ui/App/copyView.d.ts +1 -0
  68. package/esm/ui/App/copyView.js +29 -0
  69. package/esm/ui/App/dockviewUtils.d.ts +44 -0
  70. package/esm/ui/App/dockviewUtils.js +45 -0
  71. package/esm/ui/App/index.d.ts +2 -1
  72. package/esm/ui/App/index.js +2 -1
  73. package/esm/ui/App/types.d.ts +7 -0
  74. package/esm/ui/App/types.js +1 -0
  75. package/esm/ui/index.d.ts +1 -1
  76. package/esm/ui/index.js +1 -1
  77. package/package.json +27 -32
  78. package/dist/AppFocus/index.d.ts +0 -5
  79. package/dist/AppFocus/index.js +0 -15
  80. package/dist/Assemblies/SessionAssembliesMixin.d.ts +0 -67
  81. package/dist/Assemblies/SessionAssembliesMixin.js +0 -46
  82. package/dist/Assemblies/TemporaryAssembliesMixin.d.ts +0 -8
  83. package/dist/Assemblies/TemporaryAssembliesMixin.js +0 -30
  84. package/dist/Assemblies/index.d.ts +0 -2
  85. package/dist/Assemblies/index.js +0 -18
  86. package/dist/HistoryManagement/index.d.ts +0 -23
  87. package/dist/HistoryManagement/index.js +0 -47
  88. package/dist/JBrowseConfig/RootConfiguration.d.ts +0 -102
  89. package/dist/JBrowseConfig/RootConfiguration.js +0 -46
  90. package/dist/JBrowseConfig/index.d.ts +0 -115
  91. package/dist/JBrowseConfig/index.js +0 -26
  92. package/dist/JBrowseModel/index.d.ts +0 -142
  93. package/dist/JBrowseModel/index.js +0 -101
  94. package/dist/RootMenu/index.d.ts +0 -13
  95. package/dist/RootMenu/index.js +0 -74
  96. package/dist/index.d.ts +0 -8
  97. package/dist/index.js +0 -24
  98. package/dist/menus.d.ts +0 -74
  99. package/dist/menus.js +0 -108
  100. package/dist/ui/App/App.d.ts +0 -18
  101. package/dist/ui/App/App.js +0 -82
  102. package/dist/ui/App/AppFab.d.ts +0 -5
  103. package/dist/ui/App/AppFab.js +0 -32
  104. package/dist/ui/App/AppToolbar.d.ts +0 -18
  105. package/dist/ui/App/AppToolbar.js +0 -44
  106. package/dist/ui/App/DialogQueue.d.ts +0 -5
  107. package/dist/ui/App/DialogQueue.js +0 -10
  108. package/dist/ui/App/Drawer.js +0 -51
  109. package/dist/ui/App/DrawerControls.d.ts +0 -5
  110. package/dist/ui/App/DrawerControls.js +0 -30
  111. package/dist/ui/App/DrawerHeader.d.ts +0 -7
  112. package/dist/ui/App/DrawerHeader.js +0 -37
  113. package/dist/ui/App/DrawerWidget.d.ts +0 -5
  114. package/dist/ui/App/DrawerWidget.js +0 -65
  115. package/dist/ui/App/DrawerWidgetSelector.d.ts +0 -5
  116. package/dist/ui/App/DrawerWidgetSelector.js +0 -52
  117. package/dist/ui/App/ModalWidget.d.ts +0 -6
  118. package/dist/ui/App/ModalWidget.js +0 -53
  119. package/dist/ui/App/ViewContainer.d.ts +0 -6
  120. package/dist/ui/App/ViewContainer.js +0 -55
  121. package/dist/ui/App/ViewContainerTitle.d.ts +0 -5
  122. package/dist/ui/App/ViewContainerTitle.js +0 -44
  123. package/dist/ui/App/ViewHeader.js +0 -60
  124. package/dist/ui/App/ViewLauncher.d.ts +0 -11
  125. package/dist/ui/App/ViewLauncher.js +0 -29
  126. package/dist/ui/App/ViewMenu.d.ts +0 -8
  127. package/dist/ui/App/ViewMenu.js +0 -74
  128. package/dist/ui/App/ViewWrapper.d.ts +0 -6
  129. package/dist/ui/App/ViewWrapper.js +0 -23
  130. package/dist/ui/App/ViewsContainer.d.ts +0 -12
  131. package/dist/ui/App/ViewsContainer.js +0 -57
  132. package/dist/ui/App/index.d.ts +0 -1
  133. package/dist/ui/App/index.js +0 -17
  134. package/dist/ui/index.d.ts +0 -1
  135. package/dist/ui/index.js +0 -17
@@ -1,46 +0,0 @@
1
- "use strict";
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- var __importDefault = (this && this.__importDefault) || function (mod) {
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- return (mod && mod.__esModule) ? mod : { "default": mod };
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- };
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- Object.defineProperty(exports, "__esModule", { value: true });
6
- exports.default = RootConfiguration;
7
- const configuration_1 = require("@jbrowse/core/configuration");
8
- const RpcManager_1 = __importDefault(require("@jbrowse/core/rpc/RpcManager"));
9
- const product_core_1 = require("@jbrowse/product-core");
10
- function RootConfiguration({ pluginManager, }) {
11
- return (0, configuration_1.ConfigurationSchema)('Root', {
12
- rpc: RpcManager_1.default.configSchema,
13
- highResolutionScaling: {
14
- type: 'number',
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- defaultValue: 2,
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- },
17
- formatDetails: (0, product_core_1.FormatDetailsConfigSchemaFactory)(),
18
- formatAbout: (0, product_core_1.FormatAboutConfigSchemaFactory)(),
19
- shareURL: {
20
- type: 'string',
21
- defaultValue: 'https://share.jbrowse.org/api/v1/',
22
- },
23
- disableAnalytics: {
24
- type: 'boolean',
25
- defaultValue: false,
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- },
27
- hierarchical: (0, product_core_1.HierarchicalConfigSchemaFactory)(),
28
- theme: {
29
- type: 'frozen',
30
- defaultValue: {},
31
- },
32
- extraThemes: {
33
- type: 'frozen',
34
- defaultValue: {},
35
- },
36
- logoPath: {
37
- type: 'fileLocation',
38
- defaultValue: {
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- uri: '',
40
- locationType: 'UriLocation',
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- },
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- },
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- ...pluginManager.pluginConfigurationNamespacedSchemas(),
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- ...pluginManager.pluginConfigurationUnnamespacedSchemas(),
45
- });
46
- }
@@ -1,115 +0,0 @@
1
- import type { PluginDefinition } from '@jbrowse/core/PluginLoader';
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- import type PluginManager from '@jbrowse/core/PluginManager';
3
- import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
4
- export declare function JBrowseConfigF({ pluginManager, assemblyConfigSchema, }: {
5
- pluginManager: PluginManager;
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- assemblyConfigSchema: AnyConfigurationSchemaType;
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- }): import("mobx-state-tree").IModelType<{
8
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
9
- rpc: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
10
- defaultDriver: {
11
- type: string;
12
- description: string;
13
- defaultValue: string;
14
- };
15
- drivers: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IMapType<import("mobx-state-tree").ITypeUnion<import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> | undefined, import("mobx-state-tree").ModelSnapshotType<Record<string, any>>, ({} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> & import("mobx-state-tree/dist/internal").NonEmptyObject) | undefined>>, [undefined]>;
16
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
17
- highResolutionScaling: {
18
- type: string;
19
- defaultValue: number;
20
- };
21
- formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
22
- feature: {
23
- type: string;
24
- description: string;
25
- defaultValue: {};
26
- contextVariable: string[];
27
- };
28
- subfeatures: {
29
- type: string;
30
- description: string;
31
- defaultValue: {};
32
- contextVariable: string[];
33
- };
34
- depth: {
35
- type: string;
36
- defaultValue: number;
37
- description: string;
38
- };
39
- maxDepth: {
40
- type: string;
41
- defaultValue: number;
42
- description: string;
43
- };
44
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
45
- formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
46
- config: {
47
- type: string;
48
- description: string;
49
- defaultValue: {};
50
- contextVariable: string[];
51
- };
52
- hideUris: {
53
- type: string;
54
- defaultValue: boolean;
55
- };
56
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
57
- shareURL: {
58
- type: string;
59
- defaultValue: string;
60
- };
61
- disableAnalytics: {
62
- type: string;
63
- defaultValue: boolean;
64
- };
65
- hierarchical: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
66
- sort: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
67
- trackNames: {
68
- type: string;
69
- defaultValue: boolean;
70
- };
71
- categories: {
72
- type: string;
73
- defaultValue: boolean;
74
- };
75
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
76
- defaultCollapsed: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
77
- categoryNames: {
78
- type: string;
79
- defaultValue: never[];
80
- };
81
- topLevelCategories: {
82
- type: string;
83
- defaultValue: boolean;
84
- };
85
- subCategories: {
86
- type: string;
87
- defaultValue: boolean;
88
- };
89
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
90
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
91
- theme: {
92
- type: string;
93
- defaultValue: {};
94
- };
95
- extraThemes: {
96
- type: string;
97
- defaultValue: {};
98
- };
99
- logoPath: {
100
- type: string;
101
- defaultValue: {
102
- uri: string;
103
- locationType: string;
104
- };
105
- };
106
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
107
- plugins: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<PluginDefinition, PluginDefinition, PluginDefinition>>;
108
- assemblies: import("mobx-state-tree").IArrayType<AnyConfigurationSchemaType>;
109
- tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
110
- internetAccounts: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
111
- aggregateTextSearchAdapters: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
112
- connections: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
113
- defaultSession: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<any, any, any>, [undefined]>;
114
- preConfiguredSessions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<any, any, any>>;
115
- }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
@@ -1,26 +0,0 @@
1
- "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
- Object.defineProperty(exports, "__esModule", { value: true });
6
- exports.JBrowseConfigF = JBrowseConfigF;
7
- const mobx_state_tree_1 = require("mobx-state-tree");
8
- const RootConfiguration_1 = __importDefault(require("./RootConfiguration"));
9
- function JBrowseConfigF({ pluginManager, assemblyConfigSchema, }) {
10
- return mobx_state_tree_1.types.model('JBrowseConfig', {
11
- configuration: (0, RootConfiguration_1.default)({
12
- pluginManager,
13
- }),
14
- plugins: mobx_state_tree_1.types.array(mobx_state_tree_1.types.frozen()),
15
- assemblies: mobx_state_tree_1.types.array(assemblyConfigSchema),
16
- tracks: mobx_state_tree_1.types.array(pluginManager.pluggableConfigSchemaType('track')),
17
- internetAccounts: mobx_state_tree_1.types.array(pluginManager.pluggableConfigSchemaType('internet account')),
18
- aggregateTextSearchAdapters: mobx_state_tree_1.types.array(pluginManager.pluggableConfigSchemaType('text search adapter')),
19
- connections: mobx_state_tree_1.types.array(pluginManager.pluggableConfigSchemaType('connection')),
20
- defaultSession: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.frozen(), {
21
- name: 'New Session',
22
- }),
23
- preConfiguredSessions: mobx_state_tree_1.types.array(mobx_state_tree_1.types.frozen()),
24
- ...pluginManager.pluginConfigurationRootSchemas(),
25
- });
26
- }
@@ -1,142 +0,0 @@
1
- import type { PluginDefinition } from '@jbrowse/core/PluginLoader';
2
- import type PluginManager from '@jbrowse/core/PluginManager';
3
- import type { BaseAssemblyConfigSchema } from '@jbrowse/core/assemblyManager';
4
- import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
5
- import type RpcManager from '@jbrowse/core/rpc/RpcManager';
6
- export declare function JBrowseModelF({ pluginManager, assemblyConfigSchema, }: {
7
- pluginManager: PluginManager;
8
- assemblyConfigSchema: BaseAssemblyConfigSchema;
9
- }): import("mobx-state-tree").IModelType<{
10
- configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
11
- rpc: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
12
- defaultDriver: {
13
- type: string;
14
- description: string;
15
- defaultValue: string;
16
- };
17
- drivers: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IMapType<import("mobx-state-tree").ITypeUnion<import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> | undefined, import("mobx-state-tree").ModelSnapshotType<Record<string, any>>, ({} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> & import("mobx-state-tree/dist/internal").NonEmptyObject) | undefined>>, [undefined]>;
18
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
19
- highResolutionScaling: {
20
- type: string;
21
- defaultValue: number;
22
- };
23
- formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
24
- feature: {
25
- type: string;
26
- description: string;
27
- defaultValue: {};
28
- contextVariable: string[];
29
- };
30
- subfeatures: {
31
- type: string;
32
- description: string;
33
- defaultValue: {};
34
- contextVariable: string[];
35
- };
36
- depth: {
37
- type: string;
38
- defaultValue: number;
39
- description: string;
40
- };
41
- maxDepth: {
42
- type: string;
43
- defaultValue: number;
44
- description: string;
45
- };
46
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
47
- formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
48
- config: {
49
- type: string;
50
- description: string;
51
- defaultValue: {};
52
- contextVariable: string[];
53
- };
54
- hideUris: {
55
- type: string;
56
- defaultValue: boolean;
57
- };
58
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
59
- shareURL: {
60
- type: string;
61
- defaultValue: string;
62
- };
63
- disableAnalytics: {
64
- type: string;
65
- defaultValue: boolean;
66
- };
67
- hierarchical: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
68
- sort: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
69
- trackNames: {
70
- type: string;
71
- defaultValue: boolean;
72
- };
73
- categories: {
74
- type: string;
75
- defaultValue: boolean;
76
- };
77
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
78
- defaultCollapsed: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
79
- categoryNames: {
80
- type: string;
81
- defaultValue: never[];
82
- };
83
- topLevelCategories: {
84
- type: string;
85
- defaultValue: boolean;
86
- };
87
- subCategories: {
88
- type: string;
89
- defaultValue: boolean;
90
- };
91
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
92
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
93
- theme: {
94
- type: string;
95
- defaultValue: {};
96
- };
97
- extraThemes: {
98
- type: string;
99
- defaultValue: {};
100
- };
101
- logoPath: {
102
- type: string;
103
- defaultValue: {
104
- uri: string;
105
- locationType: string;
106
- };
107
- };
108
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
109
- plugins: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<PluginDefinition, PluginDefinition, PluginDefinition>>;
110
- assemblies: import("mobx-state-tree").IArrayType<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
111
- tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
112
- internetAccounts: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
113
- aggregateTextSearchAdapters: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
114
- connections: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
115
- defaultSession: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<any, any, any>, [undefined]>;
116
- preConfiguredSessions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<any, any, any>>;
117
- }, {
118
- readonly assemblyNames: string[];
119
- readonly rpcManager: RpcManager;
120
- } & {
121
- addAssemblyConf(conf: AnyConfigurationModel): ({
122
- [x: string]: any;
123
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
124
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
125
- [x: string]: any;
126
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
127
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
128
- [x: string]: any;
129
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
130
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
131
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>) | undefined;
132
- removeAssemblyConf(assemblyName: string): void;
133
- addTrackConf(trackConf: AnyConfigurationModel): any;
134
- addConnectionConf(connectionConf: AnyConfigurationModel): any;
135
- deleteConnectionConf(configuration: AnyConfigurationModel): boolean;
136
- deleteTrackConf(trackConf: AnyConfigurationModel): boolean;
137
- addPlugin(pluginDefinition: PluginDefinition): void;
138
- removePlugin(pluginDefinition: PluginDefinition): void;
139
- setDefaultSessionConf(sessionConf: AnyConfigurationModel): void;
140
- addInternetAccountConf(internetAccountConf: AnyConfigurationModel): any;
141
- deleteInternetAccountConf(configuration: AnyConfigurationModel): boolean;
142
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
@@ -1,101 +0,0 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.JBrowseModelF = JBrowseModelF;
4
- const configuration_1 = require("@jbrowse/core/configuration");
5
- const mobx_1 = require("mobx");
6
- const mobx_state_tree_1 = require("mobx-state-tree");
7
- const JBrowseConfig_1 = require("../JBrowseConfig");
8
- function JBrowseModelF({ pluginManager, assemblyConfigSchema, }) {
9
- return (0, JBrowseConfig_1.JBrowseConfigF)({ pluginManager, assemblyConfigSchema })
10
- .views(self => ({
11
- get assemblyNames() {
12
- return self.assemblies.map(assembly => (0, configuration_1.readConfObject)(assembly, 'name'));
13
- },
14
- get rpcManager() {
15
- return (0, mobx_state_tree_1.getParent)(self).rpcManager;
16
- },
17
- }))
18
- .actions(self => ({
19
- addAssemblyConf(conf) {
20
- const { name } = conf;
21
- if (!name) {
22
- throw new Error('Can\'t add assembly with no "name"');
23
- }
24
- if (self.assemblyNames.includes(name)) {
25
- throw new Error(`Can't add assembly with name "${name}", an assembly with that name already exists`);
26
- }
27
- const length = self.assemblies.push({
28
- ...conf,
29
- sequence: {
30
- type: 'ReferenceSequenceTrack',
31
- trackId: `${name}-${Date.now()}`,
32
- ...conf.sequence,
33
- },
34
- });
35
- return self.assemblies[length - 1];
36
- },
37
- removeAssemblyConf(assemblyName) {
38
- const toRemove = self.assemblies.find(a => a.name === assemblyName);
39
- if (toRemove) {
40
- self.assemblies.remove(toRemove);
41
- }
42
- },
43
- addTrackConf(trackConf) {
44
- const { type } = trackConf;
45
- if (!type) {
46
- throw new Error(`unknown track type ${type}`);
47
- }
48
- const length = self.tracks.push(trackConf);
49
- return self.tracks[length - 1];
50
- },
51
- addConnectionConf(connectionConf) {
52
- const { type } = connectionConf;
53
- if (!type) {
54
- throw new Error(`unknown connection type ${type}`);
55
- }
56
- const length = self.connections.push(connectionConf);
57
- return self.connections[length - 1];
58
- },
59
- deleteConnectionConf(configuration) {
60
- const elt = self.connections.find(conn => conn.id === configuration.id);
61
- return self.connections.remove(elt);
62
- },
63
- deleteTrackConf(trackConf) {
64
- const elt = self.tracks.find(t => t.trackId === trackConf.trackId);
65
- return self.tracks.remove(elt);
66
- },
67
- addPlugin(pluginDefinition) {
68
- self.plugins.push(pluginDefinition);
69
- const rootModel = (0, mobx_state_tree_1.getParent)(self);
70
- rootModel.setPluginsUpdated(true);
71
- },
72
- removePlugin(pluginDefinition) {
73
- self.plugins = (0, mobx_state_tree_1.cast)(self.plugins.filter(plugin => plugin.url !== pluginDefinition.url ||
74
- plugin.umdUrl !== pluginDefinition.umdUrl ||
75
- plugin.cjsUrl !== pluginDefinition.cjsUrl ||
76
- plugin.esmUrl !== pluginDefinition.esmUrl));
77
- (0, mobx_state_tree_1.getParent)(self).setPluginsUpdated(true);
78
- },
79
- setDefaultSessionConf(sessionConf) {
80
- const newDefault = (0, mobx_state_tree_1.getParent)(self).session.name === sessionConf.name
81
- ? (0, mobx_state_tree_1.getSnapshot)(sessionConf)
82
- : (0, mobx_1.toJS)(sessionConf);
83
- if (!newDefault.name) {
84
- throw new Error(`unable to set default session to ${newDefault.name}`);
85
- }
86
- self.defaultSession = (0, mobx_state_tree_1.cast)(newDefault);
87
- },
88
- addInternetAccountConf(internetAccountConf) {
89
- const { type } = internetAccountConf;
90
- if (!type) {
91
- throw new Error(`unknown internetAccount type ${type}`);
92
- }
93
- const length = self.internetAccounts.push(internetAccountConf);
94
- return self.internetAccounts[length - 1];
95
- },
96
- deleteInternetAccountConf(configuration) {
97
- const elt = self.internetAccounts.find(a => a.id === configuration.id);
98
- return self.internetAccounts.remove(elt);
99
- },
100
- }));
101
- }
@@ -1,13 +0,0 @@
1
- import type { Menu, MenuAction } from '../menus';
2
- import type { MenuItem } from '@jbrowse/core/ui/Menu';
3
- export declare function RootAppMenuMixin(): import("mobx-state-tree").IModelType<{}, {
4
- mutableMenuActions: MenuAction[];
5
- } & {
6
- setMenus(newMenus: Menu[]): void;
7
- appendMenu(menuName: string): void;
8
- insertMenu(menuName: string, position: number): void;
9
- appendToMenu(menuName: string, menuItem: MenuItem): void;
10
- insertInMenu(menuName: string, menuItem: MenuItem, position: number): void;
11
- appendToSubMenu(menuPath: string[], menuItem: MenuItem): void;
12
- insertInSubMenu(menuPath: string[], menuItem: MenuItem, position: number): void;
13
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
@@ -1,74 +0,0 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.RootAppMenuMixin = RootAppMenuMixin;
4
- const mobx_state_tree_1 = require("mobx-state-tree");
5
- function RootAppMenuMixin() {
6
- return mobx_state_tree_1.types
7
- .model({})
8
- .volatile(() => ({
9
- mutableMenuActions: [],
10
- }))
11
- .actions(self => ({
12
- setMenus(newMenus) {
13
- self.mutableMenuActions = [
14
- ...self.mutableMenuActions,
15
- { type: 'setMenus', newMenus },
16
- ];
17
- },
18
- appendMenu(menuName) {
19
- self.mutableMenuActions = [
20
- ...self.mutableMenuActions,
21
- { type: 'appendMenu', menuName },
22
- ];
23
- },
24
- insertMenu(menuName, position) {
25
- self.mutableMenuActions = [
26
- ...self.mutableMenuActions,
27
- {
28
- type: 'insertMenu',
29
- menuName,
30
- position,
31
- },
32
- ];
33
- },
34
- appendToMenu(menuName, menuItem) {
35
- self.mutableMenuActions = [
36
- ...self.mutableMenuActions,
37
- {
38
- type: 'appendToMenu',
39
- menuName,
40
- menuItem,
41
- },
42
- ];
43
- },
44
- insertInMenu(menuName, menuItem, position) {
45
- self.mutableMenuActions.push({
46
- type: 'insertInMenu',
47
- menuName,
48
- menuItem,
49
- position,
50
- });
51
- },
52
- appendToSubMenu(menuPath, menuItem) {
53
- self.mutableMenuActions = [
54
- ...self.mutableMenuActions,
55
- {
56
- type: 'appendToSubMenu',
57
- menuPath,
58
- menuItem,
59
- },
60
- ];
61
- },
62
- insertInSubMenu(menuPath, menuItem, position) {
63
- self.mutableMenuActions = [
64
- ...self.mutableMenuActions,
65
- {
66
- type: 'insertInSubMenu',
67
- menuPath,
68
- menuItem,
69
- position,
70
- },
71
- ];
72
- },
73
- }));
74
- }
package/dist/index.d.ts DELETED
@@ -1,8 +0,0 @@
1
- export * from './ui';
2
- export * from './HistoryManagement';
3
- export * from './AppFocus';
4
- export * from './JBrowseConfig';
5
- export * from './JBrowseModel';
6
- export * from './Assemblies';
7
- export * from './RootMenu';
8
- export * from './menus';
package/dist/index.js DELETED
@@ -1,24 +0,0 @@
1
- "use strict";
2
- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
- if (k2 === undefined) k2 = k;
4
- var desc = Object.getOwnPropertyDescriptor(m, k);
5
- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
- desc = { enumerable: true, get: function() { return m[k]; } };
7
- }
8
- Object.defineProperty(o, k2, desc);
9
- }) : (function(o, m, k, k2) {
10
- if (k2 === undefined) k2 = k;
11
- o[k2] = m[k];
12
- }));
13
- var __exportStar = (this && this.__exportStar) || function(m, exports) {
14
- for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
15
- };
16
- Object.defineProperty(exports, "__esModule", { value: true });
17
- __exportStar(require("./ui"), exports);
18
- __exportStar(require("./HistoryManagement"), exports);
19
- __exportStar(require("./AppFocus"), exports);
20
- __exportStar(require("./JBrowseConfig"), exports);
21
- __exportStar(require("./JBrowseModel"), exports);
22
- __exportStar(require("./Assemblies"), exports);
23
- __exportStar(require("./RootMenu"), exports);
24
- __exportStar(require("./menus"), exports);
package/dist/menus.d.ts DELETED
@@ -1,74 +0,0 @@
1
- import type { MenuItem } from '@jbrowse/core/ui';
2
- interface InsertInSubMenuAction {
3
- type: 'insertInSubMenu';
4
- menuPath: string[];
5
- menuItem: MenuItem;
6
- position: number;
7
- }
8
- interface InsertInMenuAction {
9
- type: 'insertInMenu';
10
- menuName: string;
11
- menuItem: MenuItem;
12
- position: number;
13
- }
14
- interface AppendToMenuAction {
15
- type: 'appendToMenu';
16
- menuName: string;
17
- menuItem: MenuItem;
18
- }
19
- interface AppendToSubMenuAction {
20
- type: 'appendToSubMenu';
21
- menuPath: string[];
22
- menuItem: MenuItem;
23
- }
24
- interface AppendMenuAction {
25
- type: 'appendMenu';
26
- menuName: string;
27
- }
28
- interface InsertMenuAction {
29
- type: 'insertMenu';
30
- menuName: string;
31
- position: number;
32
- }
33
- interface SetMenusAction {
34
- type: 'setMenus';
35
- newMenus: Menu[];
36
- }
37
- export type MenuAction = InsertMenuAction | AppendMenuAction | AppendToSubMenuAction | AppendToMenuAction | InsertInMenuAction | InsertInSubMenuAction | SetMenusAction;
38
- export interface Menu {
39
- label: string;
40
- menuItems: MenuItem[];
41
- }
42
- export declare function appendMenu({ menus, menuName, }: {
43
- menus: Menu[];
44
- menuName: string;
45
- }): number;
46
- export declare function insertMenu({ menus, menuName, position, }: {
47
- menus: Menu[];
48
- menuName: string;
49
- position: number;
50
- }): number;
51
- export declare function appendToMenu({ menus, menuName, menuItem, }: {
52
- menus: Menu[];
53
- menuName: string;
54
- menuItem: MenuItem;
55
- }): number;
56
- export declare function insertInMenu({ menus, menuName, menuItem, position, }: {
57
- menus: Menu[];
58
- menuName: string;
59
- menuItem: MenuItem;
60
- position: number;
61
- }): number;
62
- export declare function appendToSubMenu({ menus, menuPath, menuItem, }: {
63
- menus: Menu[];
64
- menuPath: string[];
65
- menuItem: MenuItem;
66
- }): number;
67
- export declare function insertInSubMenu({ menus, menuPath, menuItem, position, }: {
68
- menus: Menu[];
69
- menuPath: string[];
70
- menuItem: MenuItem;
71
- position: number;
72
- }): number;
73
- export declare function processMutableMenuActions(ret: Menu[], actions: MenuAction[]): Menu[];
74
- export {};