@jbrowse/app-core 3.7.0 → 4.0.1

package/esm/ui/App/ViewsContainer.js

@@ -1,19 +1,21 @@
-import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
+import { jsx as _jsx } from "react/jsx-runtime";
 import { Suspense, lazy } from 'react';
+import { makeStyles } from '@jbrowse/core/util/tss-react';
 import { observer } from 'mobx-react';
-import { makeStyles } from 'tss-react/mui';
-import ViewContainer from './ViewContainer';
-const ViewLauncher = lazy(() => import('./ViewLauncher'));
+const ClassicViewsContainer = lazy(() => import("./ClassicViewsContainer.js"));
+const TiledViewsContainer = lazy(() => import("./TiledViewsContainer.js"));
+const ViewLauncher = lazy(() => import("./ViewLauncher.js"));
 const useStyles = makeStyles()({
     viewsContainer: {
-        overflowY: 'auto',
         gridRow: 'components',
+        overflow: 'hidden',
     },
 });
 const ViewsContainer = observer(function ViewsContainer(props) {
     const { session } = props;
     const { views } = session;
     const { classes } = useStyles();
-    return (_jsxs("div", { className: classes.viewsContainer, children: [views.length > 0 ? (views.map(view => (_jsx(ViewContainer, { view: view, session: session }, `view-${view.id}`)))) : (_jsx(Suspense, { fallback: null, children: _jsx(ViewLauncher, { ...props }) })), _jsx("div", { style: { height: 300 } })] }));
+    const useWorkspaces = 'useWorkspaces' in session ? session.useWorkspaces : true;
+    return (_jsx("div", { className: classes.viewsContainer, children: views.length > 0 ? (_jsx(Suspense, { fallback: null, children: useWorkspaces ? (_jsx(TiledViewsContainer, { session: session })) : (_jsx(ClassicViewsContainer, { session: session })) })) : (_jsx(Suspense, { fallback: null, children: _jsx(ViewLauncher, { ...props }) })) }));
 });
 export default ViewsContainer;

package/esm/ui/App/copyView.d.ts

@@ -0,0 +1 @@
+export declare function renameIds(obj: Record<string, unknown>): Record<string, unknown>;

package/esm/ui/App/copyView.js

@@ -0,0 +1,29 @@
+import { nanoid } from '@jbrowse/core/util/nanoid';
+export function renameIds(obj) {
+    const idMap = new Map();
+    function transformIds(value) {
+        if (value === null || value === undefined) {
+            return value;
+        }
+        if (Array.isArray(value)) {
+            return value.map(transformIds);
+        }
+        if (typeof value === 'object') {
+            const result = {};
+            for (const [key, val] of Object.entries(value)) {
+                if (key === 'id' && typeof val === 'string') {
+                    if (!idMap.has(val)) {
+                        idMap.set(val, nanoid());
+                    }
+                    result[key] = `${val}-${idMap.get(val)}`;
+                }
+                else {
+                    result[key] = transformIds(val);
+                }
+            }
+            return result;
+        }
+        return value;
+    }
+    return transformIds(obj);
+}

package/esm/ui/App/dockviewUtils.d.ts

@@ -0,0 +1,44 @@
+import type { DockviewSessionType } from './types.ts';
+import type { DockviewApi } from 'dockview-react';
+export declare function createPanelConfig(panelId: string, session: DockviewSessionType, title?: string): {
+    id: string;
+    component: "jbrowseView";
+    tabComponent: "jbrowseTab";
+    title: string;
+    params: {
+        panelId: string;
+        session: DockviewSessionType;
+    };
+};
+export declare function cleanLayoutForStorage(layout: ReturnType<DockviewApi['toJSON']>): {
+    panels: {
+        [k: string]: {
+            params: {};
+            id: string;
+            contentComponent?: string;
+            tabComponent?: string;
+            title?: string;
+            renderer?: import("dockview-core").DockviewPanelRenderer;
+            minimumWidth?: number;
+            minimumHeight?: number;
+            maximumWidth?: number;
+            maximumHeight?: number;
+        };
+    };
+    grid: {
+        root: import("dockview-core").SerializedGridObject<import("dockview-core/dist/cjs/dockview/dockviewGroupPanelModel").GroupPanelViewState>;
+        height: number;
+        width: number;
+        orientation: import("dockview-core").Orientation;
+    };
+    activeGroup?: string;
+    floatingGroups?: import("dockview-core").SerializedFloatingGroup[];
+    popoutGroups?: import("dockview-core").SerializedPopoutGroup[];
+};
+export declare function updatePanelParams(api: DockviewApi, session: DockviewSessionType): void;
+export declare function rearrangePanelsWithDirection(api: DockviewApi, getPosition: (idx: number, panelStates: {
+    id: string;
+}[]) => {
+    referencePanel: string;
+    direction: 'right' | 'below' | 'within';
+} | undefined): void;

package/esm/ui/App/dockviewUtils.js

@@ -0,0 +1,45 @@
+export function createPanelConfig(panelId, session, title = 'Main') {
+    return {
+        id: panelId,
+        component: 'jbrowseView',
+        tabComponent: 'jbrowseTab',
+        title,
+        params: { panelId, session },
+    };
+}
+export function cleanLayoutForStorage(layout) {
+    return {
+        ...layout,
+        panels: Object.fromEntries(Object.entries(layout.panels).map(([id, panel]) => [
+            id,
+            { ...panel, params: {} },
+        ])),
+    };
+}
+export function updatePanelParams(api, session) {
+    for (const panel of api.panels) {
+        panel.update({ params: { panelId: panel.id, session } });
+    }
+}
+export function rearrangePanelsWithDirection(api, getPosition) {
+    const panels = api.panels;
+    if (panels.length <= 1) {
+        return;
+    }
+    const panelStates = panels.map(p => ({
+        id: p.id,
+        component: 'jbrowseView',
+        tabComponent: 'jbrowseTab',
+        title: p.title,
+        params: p.params,
+    }));
+    for (const p of panels) {
+        api.removePanel(p);
+    }
+    for (const [idx, state] of panelStates.entries()) {
+        api.addPanel({
+            ...state,
+            position: getPosition(idx, panelStates),
+        });
+    }
+}

package/esm/ui/App/index.d.ts

@@ -1 +1,2 @@
-export * from './App';
+export * from './App.tsx';
+export { default as DialogQueue } from './DialogQueue.tsx';

package/esm/ui/App/index.js

@@ -1 +1,2 @@
-export * from './App';
+export * from "./App.js";
+export { default as DialogQueue } from "./DialogQueue.js";

package/esm/ui/App/types.d.ts

@@ -0,0 +1,7 @@
+import type { SnackbarMessage } from '@jbrowse/core/ui/SnackbarModel';
+import type { AbstractViewContainer, SessionWithFocusedViewAndDrawerWidgets } from '@jbrowse/core/util';
+export type DockviewSessionType = SessionWithFocusedViewAndDrawerWidgets & AbstractViewContainer & {
+    renameCurrentSession: (arg: string) => void;
+    snackbarMessages: SnackbarMessage[];
+    popSnackbarMessage: () => unknown;
+};

package/esm/ui/App/types.js

@@ -0,0 +1 @@
+export {};

package/esm/ui/index.d.ts

@@ -1 +1 @@
-export * from './App';
+export * from './App/index.ts';

package/esm/ui/index.js

@@ -1 +1 @@
-export * from './App';
+export * from "./App/index.js";

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/app-core",
-  "version": "3.7.0",
+  "version": "4.0.1",
   "description": "JBrowse 2 code shared between the 'full featured' apps e.g. jbrowse-web and jbrowse-desktop",
   "keywords": [
     "jbrowse",
@@ -18,39 +18,20 @@
     "directory": "packages/app-core"
   },
   "author": "JBrowse Team",
-  "distMain": "dist/index.js",
-  "distModule": "esm/index.js",
-  "srcMain": "src/index.ts",
-  "srcModule": "src/index.ts",
-  "main": "dist/index.js",
-  "module": "esm/index.js",
+  "main": "esm/index.js",
   "files": [
-    "dist",
     "esm"
   ],
-  "scripts": {
-    "build:esm": "tsc --build tsconfig.build.esm.json",
-    "build:commonjs": "tsc --build tsconfig.build.commonjs.json",
-    "build": "npm run build:esm && npm run build:commonjs",
-    "test": "cd ../..; jest --passWithNoTests packages/app-core",
-    "clean": "rimraf dist esm *.tsbuildinfo",
-    "prebuild": "yarn clean",
-    "prepack": "yarn build && yarn useDist",
-    "postpack": "yarn useSrc",
-    "useDist": "node ../../scripts/useDist.js",
-    "useSrc": "node ../../scripts/useSrc.js"
-  },
   "dependencies": {
-    "@babel/runtime": "^7.16.3",
-    "@jbrowse/product-core": "^3.7.0",
-    "@mui/icons-material": "^7.0.0",
-    "@mui/material": "^7.0.0",
-    "copy-to-clipboard": "^3.3.1",
-    "mobx": "^6.0.0",
-    "mobx-react": "^9.0.0",
-    "mobx-state-tree": "^5.0.0",
-    "rxjs": "^7.0.0",
-    "tss-react": "^4.0.0"
+    "@jbrowse/mobx-state-tree": "^5.5.0",
+    "@mui/icons-material": "^7.3.6",
+    "@mui/material": "^7.3.6",
+    "dockview-core": "^4.13.1",
+    "dockview-react": "^4.13.1",
+    "mobx": "^6.15.0",
+    "mobx-react": "^9.2.1",
+    "@jbrowse/core": "^4.0.1",
+    "@jbrowse/product-core": "^4.0.1"
   },
   "peerDependencies": {
     "react": ">=18.0.0",
@@ -59,5 +40,19 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "85bdd0d58286b7adbfd408146b15847676317635"
-}
+  "sideEffects": false,
+  "scripts": {
+    "build:esm": "tsc -p tsconfig.build.esm.json",
+    "build": "pnpm build:esm",
+    "test": "cd ../..; jest --passWithNoTests packages/app-core",
+    "clean": "rimraf esm *.tsbuildinfo",
+    "prebuild": "pnpm clean"
+  },
+  "types": "esm/index.d.ts",
+  "exports": {
+    ".": {
+      "types": "./esm/index.d.ts",
+      "import": "./esm/index.js"
+    }
+  }
+}

package/dist/AppFocus/index.d.ts

@@ -1,5 +0,0 @@
-export declare function AppFocusMixin(): import("mobx-state-tree").IModelType<{
-    focusedViewId: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-}, {
-    setFocusedViewId(viewId: string): void;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;

package/dist/AppFocus/index.js

@@ -1,15 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.AppFocusMixin = AppFocusMixin;
-const mobx_state_tree_1 = require("mobx-state-tree");
-function AppFocusMixin() {
-    return mobx_state_tree_1.types
-        .model({
-        focusedViewId: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
-    })
-        .actions(self => ({
-        setFocusedViewId(viewId) {
-            self.focusedViewId = viewId;
-        },
-    }));
-}

package/dist/Assemblies/SessionAssembliesMixin.d.ts

@@ -1,67 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-import type { BaseAssemblyConfigSchema } from '@jbrowse/core/assemblyManager';
-import type { AnyConfiguration } from '@jbrowse/core/configuration';
-export declare function SessionAssembliesMixin(pluginManager: PluginManager, assemblyConfigSchemasType: BaseAssemblyConfigSchema): import("mobx-state-tree").IModelType<{
-    sessionAssemblies: import("mobx-state-tree").IArrayType<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-        aliases: {
-            type: string;
-            defaultValue: never[];
-            description: string;
-        };
-        sequence: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-        refNameColors: {
-            type: string;
-            defaultValue: never[];
-            description: string;
-        };
-        refNameAliases: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-            adapter: import("mobx-state-tree").IAnyModelType;
-        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-        cytobands: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-            adapter: import("mobx-state-tree").IAnyModelType;
-        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-        displayName: {
-            type: string;
-            defaultValue: string;
-            description: string;
-        };
-    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "name">>>;
-}, {
-    addSessionAssembly(conf: AnyConfiguration): ({
-        [x: string]: any;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
-            [x: string]: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
-                [x: string]: any;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
-        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
-    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-        aliases: {
-            type: string;
-            defaultValue: never[];
-            description: string;
-        };
-        sequence: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-        refNameColors: {
-            type: string;
-            defaultValue: never[];
-            description: string;
-        };
-        refNameAliases: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-            adapter: import("mobx-state-tree").IAnyModelType;
-        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-        cytobands: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-            adapter: import("mobx-state-tree").IAnyModelType;
-        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-        displayName: {
-            type: string;
-            defaultValue: string;
-            description: string;
-        };
-    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "name">>>) | undefined;
-    addAssembly(conf: AnyConfiguration): void;
-    removeAssembly(name: string): void;
-    removeSessionAssembly(assemblyName: string): void;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;

package/dist/Assemblies/SessionAssembliesMixin.js

@@ -1,46 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.SessionAssembliesMixin = SessionAssembliesMixin;
-const mobx_state_tree_1 = require("mobx-state-tree");
-function SessionAssembliesMixin(pluginManager, assemblyConfigSchemasType) {
-    return mobx_state_tree_1.types
-        .model({
-        sessionAssemblies: mobx_state_tree_1.types.array(assemblyConfigSchemasType),
-    })
-        .actions(s => {
-        const self = s;
-        return {
-            addSessionAssembly(conf) {
-                const asm = self.sessionAssemblies.find(f => f.name === conf.name);
-                if (asm) {
-                    console.warn(`Assembly ${conf.name} already exists`);
-                    return asm;
-                }
-                const length = self.sessionAssemblies.push(conf);
-                return self.sessionAssemblies[length - 1];
-            },
-            addAssembly(conf) {
-                if (self.adminMode) {
-                    self.jbrowse.addAssemblyConf(conf);
-                }
-                else {
-                    this.addSessionAssembly(conf);
-                }
-            },
-            removeAssembly(name) {
-                if (self.adminMode) {
-                    self.jbrowse.removeAssemblyConf(name);
-                }
-                else {
-                    this.removeSessionAssembly(name);
-                }
-            },
-            removeSessionAssembly(assemblyName) {
-                const elt = self.sessionAssemblies.find(a => a.name === assemblyName);
-                if (elt) {
-                    self.sessionAssemblies.remove(elt);
-                }
-            },
-        };
-    });
-}

package/dist/Assemblies/TemporaryAssembliesMixin.d.ts

@@ -1,8 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-import type { AnyConfiguration } from '@jbrowse/core/configuration';
-export declare function TemporaryAssembliesMixin(pluginManager: PluginManager, assemblyConfigSchemasType?: import("mobx-state-tree").IType<any, any, any>): import("mobx-state-tree").IModelType<{
-    temporaryAssemblies: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<any, any, any>>;
-}, {
-    addTemporaryAssembly(conf: AnyConfiguration): any;
-    removeTemporaryAssembly(name: string): void;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;

package/dist/Assemblies/TemporaryAssembliesMixin.js

@@ -1,30 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.TemporaryAssembliesMixin = TemporaryAssembliesMixin;
-const mobx_state_tree_1 = require("mobx-state-tree");
-function TemporaryAssembliesMixin(pluginManager, assemblyConfigSchemasType = mobx_state_tree_1.types.frozen()) {
-    return mobx_state_tree_1.types
-        .model({
-        temporaryAssemblies: mobx_state_tree_1.types.array(assemblyConfigSchemasType),
-    })
-        .actions(s => {
-        const self = s;
-        return {
-            addTemporaryAssembly(conf) {
-                const asm = self.temporaryAssemblies.find(f => f.name === conf.name);
-                if (asm) {
-                    console.warn(`Assembly ${conf.name} was already existing`);
-                    return asm;
-                }
-                const length = self.temporaryAssemblies.push(conf);
-                return self.temporaryAssemblies[length - 1];
-            },
-            removeTemporaryAssembly(name) {
-                const elt = self.temporaryAssemblies.find(a => a.name === name);
-                if (elt) {
-                    self.temporaryAssemblies.remove(elt);
-                }
-            },
-        };
-    });
-}

package/dist/Assemblies/index.d.ts

@@ -1,2 +0,0 @@
-export * from './SessionAssembliesMixin';
-export * from './TemporaryAssembliesMixin';

package/dist/Assemblies/index.js

@@ -1,18 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __exportStar = (this && this.__exportStar) || function(m, exports) {
-    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-__exportStar(require("./SessionAssembliesMixin"), exports);
-__exportStar(require("./TemporaryAssembliesMixin"), exports);

package/dist/HistoryManagement/index.d.ts

@@ -1,23 +0,0 @@
-export declare function HistoryManagementMixin(): import("mobx-state-tree").IModelType<{
-    history: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
-        undoIdx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        targetPath: import("mobx-state-tree").IType<string | undefined, string, string>;
-    }, {
-        history: unknown[];
-        notTrackingUndo: boolean;
-    } & {
-        readonly canUndo: boolean;
-        readonly canRedo: boolean;
-    } & {
-        stopTrackingUndo(): void;
-        resumeTrackingUndo(): void;
-        addUndoState(todos: unknown): void;
-        beforeDestroy(): void;
-        initialize(): void;
-        undo(): void;
-        redo(): void;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
-}, {
-    afterCreate(): void;
-    beforeDestroy(): void;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;

package/dist/HistoryManagement/index.js

@@ -1,47 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.HistoryManagementMixin = HistoryManagementMixin;
-const TimeTraveller_1 = __importDefault(require("@jbrowse/core/util/TimeTraveller"));
-const mobx_1 = require("mobx");
-const mobx_state_tree_1 = require("mobx-state-tree");
-function HistoryManagementMixin() {
-    return mobx_state_tree_1.types
-        .model({
-        history: mobx_state_tree_1.types.optional(TimeTraveller_1.default, { targetPath: '../session' }),
-    })
-        .actions(self => {
-        const keydownListener = (e) => {
-            var _a, _b;
-            if (self.history.canRedo &&
-                (((e.ctrlKey || e.metaKey) && e.shiftKey && e.code === 'KeyZ') ||
-                    (e.ctrlKey && !e.shiftKey && e.code === 'KeyY')) &&
-                ((_a = document.activeElement) === null || _a === void 0 ? void 0 : _a.tagName.toUpperCase()) !== 'INPUT') {
-                self.history.redo();
-            }
-            if (self.history.canUndo &&
-                (e.ctrlKey || e.metaKey) &&
-                !e.shiftKey &&
-                e.code === 'KeyZ' &&
-                ((_b = document.activeElement) === null || _b === void 0 ? void 0 : _b.tagName.toUpperCase()) !== 'INPUT') {
-                self.history.undo();
-            }
-        };
-        return {
-            afterCreate() {
-                document.addEventListener('keydown', keydownListener);
-                (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(() => {
-                    const { session } = self;
-                    if (session) {
-                        self.history.initialize();
-                    }
-                }));
-            },
-            beforeDestroy() {
-                document.removeEventListener('keydown', keydownListener);
-            },
-        };
-    });
-}

package/dist/JBrowseConfig/RootConfiguration.d.ts

@@ -1,102 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function RootConfiguration({ pluginManager, }: {
-    pluginManager: PluginManager;
-}): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    rpc: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-        defaultDriver: {
-            type: string;
-            description: string;
-            defaultValue: string;
-        };
-        drivers: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IMapType<import("mobx-state-tree").ITypeUnion<import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> | undefined, import("mobx-state-tree").ModelSnapshotType<Record<string, any>>, ({} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> & import("mobx-state-tree/dist/internal").NonEmptyObject) | undefined>>, [undefined]>;
-    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-    highResolutionScaling: {
-        type: string;
-        defaultValue: number;
-    };
-    formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-        feature: {
-            type: string;
-            description: string;
-            defaultValue: {};
-            contextVariable: string[];
-        };
-        subfeatures: {
-            type: string;
-            description: string;
-            defaultValue: {};
-            contextVariable: string[];
-        };
-        depth: {
-            type: string;
-            defaultValue: number;
-            description: string;
-        };
-        maxDepth: {
-            type: string;
-            defaultValue: number;
-            description: string;
-        };
-    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-    formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-        config: {
-            type: string;
-            description: string;
-            defaultValue: {};
-            contextVariable: string[];
-        };
-        hideUris: {
-            type: string;
-            defaultValue: boolean;
-        };
-    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-    shareURL: {
-        type: string;
-        defaultValue: string;
-    };
-    disableAnalytics: {
-        type: string;
-        defaultValue: boolean;
-    };
-    hierarchical: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-        sort: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-            trackNames: {
-                type: string;
-                defaultValue: boolean;
-            };
-            categories: {
-                type: string;
-                defaultValue: boolean;
-            };
-        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-        defaultCollapsed: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-            categoryNames: {
-                type: string;
-                defaultValue: never[];
-            };
-            topLevelCategories: {
-                type: string;
-                defaultValue: boolean;
-            };
-            subCategories: {
-                type: string;
-                defaultValue: boolean;
-            };
-        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-    theme: {
-        type: string;
-        defaultValue: {};
-    };
-    extraThemes: {
-        type: string;
-        defaultValue: {};
-    };
-    logoPath: {
-        type: string;
-        defaultValue: {
-            uri: string;
-            locationType: string;
-        };
-    };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;