@jax-data-science/sci-image-visualizer 0.8.3 → 0.10.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +201 -460
- package/esm2022/index.mjs +34 -15
- package/esm2022/lib/channel-histogram/channel-histogram.component.mjs +163 -91
- package/esm2022/lib/contracts/capabilities.contract.mjs +4 -3
- package/esm2022/lib/contracts/cell-segmenter.contract.mjs +1 -1
- package/esm2022/lib/contracts/channel-histogram-api.contract.mjs +5 -1
- package/esm2022/lib/contracts/color.mjs +60 -0
- package/esm2022/lib/contracts/colormap-lut.mjs +213 -57
- package/esm2022/lib/contracts/coordinate-transform.contract.mjs +1 -1
- package/esm2022/lib/contracts/display-types.mjs +11 -1
- package/esm2022/lib/contracts/image.contract.mjs +1 -1
- package/esm2022/lib/contracts/instance-segmenter.contract.mjs +1 -1
- package/esm2022/lib/contracts/intensity.mjs +48 -5
- package/esm2022/lib/contracts/plot-type-contribution.contract.mjs +1 -1
- package/esm2022/lib/contracts/plot-type.mjs +134 -17
- package/esm2022/lib/contracts/ports/image-state.port.mjs +4 -1
- package/esm2022/lib/contracts/ports/preferences.port.mjs +5 -1
- package/esm2022/lib/contracts/ports/region-io.port.mjs +2 -1
- package/esm2022/lib/contracts/ports/spatial-data.port.mjs +5 -1
- package/esm2022/lib/contracts/ports/tile-access.port.mjs +2 -1
- package/esm2022/lib/contracts/region-editor-api.contract.mjs +1 -1
- package/esm2022/lib/contracts/region-overlay.contract.mjs +1 -1
- package/esm2022/lib/contracts/region-store.contract.mjs +1 -1
- package/esm2022/lib/contracts/sam.contract.mjs +1 -1
- package/esm2022/lib/contracts/section-view.contract.mjs +2 -0
- package/esm2022/lib/contracts/semantic-segmenter.contract.mjs +1 -1
- package/esm2022/lib/contracts/spatial-dataset.contract.mjs +3 -1
- package/esm2022/lib/contracts/toolbar-tool.contract.mjs +6 -4
- package/esm2022/lib/contracts/visualizer.contract.mjs +1 -1
- package/esm2022/lib/contracts/viz-config.mjs +2 -1
- package/esm2022/lib/geometry/contour.mjs +63 -0
- package/esm2022/lib/geometry/loft.mjs +128 -0
- package/esm2022/lib/geometry/polylabel.mjs +156 -0
- package/esm2022/lib/geometry/raster.mjs +98 -0
- package/esm2022/lib/geometry/reconstruct.mjs +315 -0
- package/esm2022/lib/geometry/reslice-image.mjs +57 -0
- package/esm2022/lib/geometry/ring.mjs +201 -0
- package/esm2022/lib/geometry/section.mjs +215 -0
- package/esm2022/lib/hex-color-picker/hex-color-picker.component.mjs +202 -102
- package/esm2022/lib/implementations/base-store-visualizer.mjs +201 -48
- package/esm2022/lib/implementations/napari-js/napari-axes-gizmo.mjs +65 -0
- package/esm2022/lib/implementations/napari-js/napari-display-state.mjs +136 -0
- package/esm2022/lib/implementations/napari-js/napari-helpers.mjs +199 -0
- package/esm2022/lib/implementations/napari-js/napari-image-2d-scene.mjs +602 -0
- package/esm2022/lib/implementations/napari-js/napari-loading-badge.mjs +12 -9
- package/esm2022/lib/implementations/napari-js/napari-loading-state.mjs +83 -0
- package/esm2022/lib/implementations/napari-js/napari-region-mesh-pointer.mjs +100 -0
- package/esm2022/lib/implementations/napari-js/napari-region-overlay.mjs +180 -591
- package/esm2022/lib/implementations/napari-js/napari-scene.mjs +2 -0
- package/esm2022/lib/implementations/napari-js/napari-spatial-2d-scene.mjs +614 -0
- package/esm2022/lib/implementations/napari-js/napari-spatial-3d-scene.mjs +769 -0
- package/esm2022/lib/implementations/napari-js/napari-spatial-encoding.mjs +199 -0
- package/esm2022/lib/implementations/napari-js/napari-spatial-hover.mjs +270 -0
- package/esm2022/lib/implementations/napari-js/napari-spatial-scene.mjs +159 -0
- package/esm2022/lib/implementations/napari-js/napari-spatial-tiles.mjs +106 -1408
- package/esm2022/lib/implementations/napari-js/napari-spatial-tooltip.mjs +2 -2
- package/esm2022/lib/implementations/napari-js/napari-surface-scene.mjs +271 -0
- package/esm2022/lib/implementations/napari-js/napari-tile-client.mjs +562 -0
- package/esm2022/lib/implementations/napari-js/napari-tool-bridge.mjs +347 -0
- package/esm2022/lib/implementations/napari-js/napari-visualizer.service.mjs +427 -4207
- package/esm2022/lib/implementations/napari-js/napari-volume-region-meshes.mjs +129 -0
- package/esm2022/lib/implementations/napari-js/napari-volume-scene.mjs +550 -0
- package/esm2022/lib/implementations/napari-js/napari-volume-slice-planes.mjs +103 -0
- package/esm2022/lib/implementations/napari-js/napari-volume-z-handle.mjs +6 -6
- package/esm2022/lib/implementations/napari-js/region-overlay/overlay-projection.mjs +96 -0
- package/esm2022/lib/implementations/napari-js/region-overlay/region-edit.mjs +35 -0
- package/esm2022/lib/implementations/napari-js/region-overlay/region-svg-renderer.mjs +194 -0
- package/esm2022/lib/implementations/napari-js/spatial-tiles/categorical-lookup.mjs +30 -0
- package/esm2022/lib/implementations/napari-js/spatial-tiles/cell-layers.mjs +274 -0
- package/esm2022/lib/implementations/napari-js/spatial-tiles/density-layer.mjs +144 -0
- package/esm2022/lib/implementations/napari-js/spatial-tiles/layer-groups.mjs +165 -0
- package/esm2022/lib/implementations/napari-js/spatial-tiles/plan-context.mjs +78 -0
- package/esm2022/lib/implementations/napari-js/spatial-tiles/transcript-hover.mjs +182 -0
- package/esm2022/lib/implementations/napari-js/spatial-tiles/transcript-jobs.mjs +369 -0
- package/esm2022/lib/implementations/napari-js/spatial-tiles/transcript-layers.mjs +306 -0
- package/esm2022/lib/implementations/osd/display-pipeline.mjs +102 -40
- package/esm2022/lib/implementations/osd/histogram-sampler.mjs +56 -31
- package/esm2022/lib/implementations/osd/openseadragon-viewer-options.mjs +128 -0
- package/esm2022/lib/implementations/osd/openseadragon-visualizer.service.mjs +333 -1685
- package/esm2022/lib/implementations/osd/osd-coordinate-transform.mjs +1 -1
- package/esm2022/lib/implementations/osd/osd-coords.mjs +5 -6
- package/esm2022/lib/implementations/osd/osd-export.mjs +122 -0
- package/esm2022/lib/implementations/osd/osd-lib.mjs +15 -1
- package/esm2022/lib/implementations/osd/osd-navigator-chrome.mjs +205 -0
- package/esm2022/lib/implementations/osd/osd-pixel-readback.mjs +68 -0
- package/esm2022/lib/implementations/osd/osd-region-overlay-draw.mjs +164 -0
- package/esm2022/lib/implementations/osd/osd-region-overlay.mjs +213 -716
- package/esm2022/lib/implementations/osd/osd-scale-bar.mjs +52 -60
- package/esm2022/lib/implementations/osd/osd-tile-source.mjs +105 -0
- package/esm2022/lib/implementations/osd/osd-viewer-like.mjs +2 -0
- package/esm2022/lib/implementations/osd/osd-viewer-mount.mjs +44 -0
- package/esm2022/lib/implementations/osd/osd-viewport.mjs +184 -0
- package/esm2022/lib/implementations/osd/osd-zoom.mjs +7 -1
- package/esm2022/lib/implementations/osd/simple-source.mjs +395 -0
- package/esm2022/lib/implementations/osd/slice-cache.mjs +53 -48
- package/esm2022/lib/implementations/osd/tile-client.mjs +32 -11
- package/esm2022/lib/implementations/osd/tile-recolor.mjs +330 -0
- package/esm2022/lib/implementations/plotly/omics-trace-builders.mjs +161 -73
- package/esm2022/lib/implementations/plotly/plotly-coordinate-transform.mjs +1 -1
- package/esm2022/lib/implementations/plotly/plotly-image-loader.mjs +112 -0
- package/esm2022/lib/implementations/plotly/plotly-image-recolor.mjs +178 -0
- package/esm2022/lib/implementations/plotly/plotly-intensity-inset.mjs +33 -0
- package/esm2022/lib/implementations/plotly/plotly-isosurface-controls.mjs +83 -0
- package/esm2022/lib/implementations/plotly/plotly-layouts.mjs +121 -0
- package/esm2022/lib/implementations/plotly/plotly-readback.mjs +117 -0
- package/esm2022/lib/implementations/plotly/plotly-region-overlay.mjs +19 -10
- package/esm2022/lib/implementations/plotly/plotly-shape-projection.mjs +223 -0
- package/esm2022/lib/implementations/plotly/plotly-trace-builders.mjs +79 -19
- package/esm2022/lib/implementations/plotly/plotly-zoom-controller.mjs +223 -0
- package/esm2022/lib/implementations/plotly/plotly.service.mjs +439 -1655
- package/esm2022/lib/implementations/region-centroids.mjs +47 -0
- package/esm2022/lib/implementations/simple-slice-access.service.mjs +22 -12
- package/esm2022/lib/implementations/spatial-data-http/spatial-data-http.service.mjs +172 -92
- package/esm2022/lib/implementations/spatial-data-http/spatial-wire.mjs +103 -22
- package/esm2022/lib/implementations/tile-server/index.mjs +6 -0
- package/esm2022/lib/implementations/tile-server/native-histogram.mjs +30 -0
- package/esm2022/lib/implementations/tile-server/poll-descriptor.mjs +65 -0
- package/esm2022/lib/implementations/tile-server/tile-protocol.mjs +42 -0
- package/esm2022/lib/implementations/tile-server/transport.mjs +135 -0
- package/esm2022/lib/intensity/intensity-profile.mjs +107 -0
- package/esm2022/lib/intensity/intensity-profile.service.mjs +223 -0
- package/esm2022/lib/intensity-inset/intensity-inset.component.mjs +133 -0
- package/esm2022/lib/models/bezier.mjs +1 -11
- package/esm2022/lib/models/class-preset.mjs +41 -3
- package/esm2022/lib/models/geometry.mjs +27 -164
- package/esm2022/lib/models/polygon-edit.mjs +254 -0
- package/esm2022/lib/models/polygon-factory.mjs +134 -0
- package/esm2022/lib/models/region-clone.mjs +68 -0
- package/esm2022/lib/models/region-geojson.mjs +411 -0
- package/esm2022/lib/models/region.mjs +34 -33
- package/esm2022/lib/models/shape.mjs +18 -16
- package/esm2022/lib/plot-mode/contribution-host.mjs +297 -0
- package/esm2022/lib/plot-mode/plot-mode-controller.mjs +9 -6
- package/esm2022/lib/plot-mode/plot-type-menu.mjs +85 -0
- package/esm2022/lib/plot-mode/tool-params-model.mjs +87 -0
- package/esm2022/lib/plot.utilities.mjs +296 -473
- package/esm2022/lib/processing/image-crop.mjs +1 -1
- package/esm2022/lib/processing/processing-image.mjs +28 -15
- package/esm2022/lib/provide-visualization.mjs +40 -14
- package/esm2022/lib/region-editor/class-tree/class-tree.component.mjs +156 -0
- package/esm2022/lib/region-editor/class-tree/class-tree.mjs +108 -0
- package/esm2022/lib/region-editor/classes-panel/classes-panel.component.mjs +163 -0
- package/esm2022/lib/region-editor/file-stem.mjs +13 -0
- package/esm2022/lib/region-editor/manage-classes-dialog/manage-classes-dialog.component.mjs +118 -0
- package/esm2022/lib/region-editor/mask-export.service.mjs +98 -0
- package/esm2022/lib/region-editor/mask-raster.mjs +11 -5
- package/esm2022/lib/region-editor/region-color-dialog/region-color-dialog.component.mjs +56 -0
- package/esm2022/lib/region-editor/region-editor-help/region-editor-help.component.mjs +28 -0
- package/esm2022/lib/region-editor/region-editor.component.mjs +896 -660
- package/esm2022/lib/region-editor/region-metrics.mjs +86 -0
- package/esm2022/lib/region-editor/region-persistence.service.mjs +160 -0
- package/esm2022/lib/region-editor/region-table/region-table.component.mjs +169 -0
- package/esm2022/lib/region-editor/save-mask-dialog/save-mask-dialog.component.mjs +91 -0
- package/esm2022/lib/region-editor/save-regions-dialog/save-regions-dialog.component.mjs +92 -0
- package/esm2022/lib/region-ops.service.mjs +28 -70
- package/esm2022/lib/region-overlay/region-geometry.mjs +360 -0
- package/esm2022/lib/region-overlay/region-hit-test.mjs +103 -0
- package/esm2022/lib/region-overlay/region-source-layer.mjs +378 -0
- package/esm2022/lib/region-overlay/region-style.mjs +97 -0
- package/esm2022/lib/region-overlay/svg-region-renderer.mjs +228 -0
- package/esm2022/lib/region-source/http-region-source.mjs +104 -0
- package/esm2022/lib/region-source/region-source-ops.mjs +53 -0
- package/esm2022/lib/region-source/region-source-worker.mjs +10 -0
- package/esm2022/lib/region-source/region-source.mjs +67 -0
- package/esm2022/lib/region-source/region-tiles.mjs +708 -0
- package/esm2022/lib/region-source/worker-region-source.mjs +229 -0
- package/esm2022/lib/render-orchestrator.mjs +14 -11
- package/esm2022/lib/render-session.mjs +207 -0
- package/esm2022/lib/routing-visualizer.service.mjs +858 -414
- package/esm2022/lib/section-pane/section-pane.component.mjs +299 -0
- package/esm2022/lib/spatial/density-raster.mjs +14 -0
- package/esm2022/lib/spatial/embedding-compute-coordinator.mjs +239 -0
- package/esm2022/lib/spatial/embedding-compute.mjs +43 -10
- package/esm2022/lib/spatial/gene-search.mjs +1 -1
- package/esm2022/lib/spatial/glyphs.mjs +97 -0
- package/esm2022/lib/spatial/lod.mjs +187 -0
- package/esm2022/lib/spatial/spatial-controls.facade.mjs +200 -0
- package/esm2022/lib/spatial/spatial-density.mjs +25 -16
- package/esm2022/lib/spatial/spatial-encoding.mjs +26 -82
- package/esm2022/lib/spatial/spatial-expression.mjs +43 -42
- package/esm2022/lib/spatial/spatial-framing.mjs +1 -1
- package/esm2022/lib/spatial/spatial-heatmap.mjs +6 -3
- package/esm2022/lib/spatial/spatial-hover.mjs +5 -33
- package/esm2022/lib/spatial/spatial-panel-model.mjs +282 -0
- package/esm2022/lib/spatial/spatial-sections.mjs +1 -1
- package/esm2022/lib/spatial/spatial-selection.mjs +33 -46
- package/esm2022/lib/spatial/spatial-tile-merge.mjs +219 -0
- package/esm2022/lib/spatial/spatial-tiles.mjs +12 -648
- package/esm2022/lib/spatial/spatial-volume-image.mjs +2 -4
- package/esm2022/lib/spatial/stats.mjs +71 -0
- package/esm2022/lib/spatial/transcript-grouping.mjs +307 -0
- package/esm2022/lib/spatial-controls/spatial-cells-panel/spatial-cells-panel.component.mjs +150 -0
- package/esm2022/lib/spatial-controls/spatial-charts/chart-data-model.mjs +309 -0
- package/esm2022/lib/spatial-controls/spatial-charts/chart-help.mjs +145 -0
- package/esm2022/lib/spatial-controls/spatial-charts/plotly-chart-host.mjs +158 -0
- package/esm2022/lib/spatial-controls/spatial-charts/spatial-chart-window/spatial-chart-window.component.mjs +47 -0
- package/esm2022/lib/spatial-controls/spatial-charts/spatial-charts.component.mjs +297 -802
- package/esm2022/lib/spatial-controls/spatial-charts/spatial-embedding-controls/spatial-embedding-controls.component.mjs +89 -0
- package/esm2022/lib/spatial-controls/spatial-charts/spatial-heatmap-controls/spatial-heatmap-controls.component.mjs +52 -0
- package/esm2022/lib/spatial-controls/spatial-controls.component.mjs +143 -1238
- package/esm2022/lib/spatial-controls/spatial-gene-picker.mjs +153 -0
- package/esm2022/lib/spatial-controls/spatial-gene-tree/spatial-gene-tree.component.mjs +241 -0
- package/esm2022/lib/spatial-controls/spatial-groups-panel/spatial-groups-panel.component.mjs +193 -0
- package/esm2022/lib/spatial-controls/spatial-key/spatial-key.component.mjs +132 -0
- package/esm2022/lib/spatial-controls/spatial-key/spatial-key.model.mjs +67 -0
- package/esm2022/lib/spatial-controls/spatial-marker-genes-form/spatial-marker-genes-form.component.mjs +147 -0
- package/esm2022/lib/spatial-controls/spatial-observations-panel/spatial-observations-panel.component.mjs +300 -0
- package/esm2022/lib/spatial-controls/spatial-transcripts-panel/spatial-transcripts-panel.component.mjs +370 -0
- package/esm2022/lib/store/class-color.util.mjs +53 -5
- package/esm2022/lib/store/class-signatures.mjs +63 -0
- package/esm2022/lib/store/region-history.mjs +146 -0
- package/esm2022/lib/store/region-scope-cache.mjs +144 -0
- package/esm2022/lib/store/region-selection.mjs +82 -0
- package/esm2022/lib/store/region-source-scope.mjs +171 -0
- package/esm2022/lib/store/region-store.service.mjs +986 -670
- package/esm2022/lib/store/spatial-selection.service.mjs +2 -2
- package/esm2022/lib/store/visualizer-store.service.mjs +81 -76
- package/esm2022/lib/toast-outlets.mjs +5 -4
- package/esm2022/lib/toolbar/brush/brush-tool.service.mjs +92 -434
- package/esm2022/lib/toolbar/canvas-tools.mjs +20 -0
- package/esm2022/lib/toolbar/crop/slide-crop.mjs +26 -42
- package/esm2022/lib/toolbar/plot-type-selector/plot-type-selector.component.mjs +85 -0
- package/esm2022/lib/toolbar/region-tools/region-tool-buttons.mjs +74 -0
- package/esm2022/lib/toolbar/region-tools/region-tools.component.mjs +120 -0
- package/esm2022/lib/toolbar/segmentation/cell-segment-tool.service.mjs +74 -78
- package/esm2022/lib/toolbar/segmentation/cellpose-segmenter.service.mjs +50 -8
- package/esm2022/lib/toolbar/segmentation/onnx-sam-session.mjs +61 -42
- package/esm2022/lib/toolbar/segmentation/pending-calls.mjs +47 -0
- package/esm2022/lib/toolbar/segmentation/sam-model-registry.mjs +12 -4
- package/esm2022/lib/toolbar/segmentation/sam-onnx-core.mjs +70 -14
- package/esm2022/lib/toolbar/segmentation/sam-point-tool.service.mjs +135 -172
- package/esm2022/lib/toolbar/segmentation/sam-prompt.mjs +9 -90
- package/esm2022/lib/toolbar/segmentation/sam-session.service.mjs +183 -0
- package/esm2022/lib/toolbar/segmentation/sam-tool.service.mjs +95 -150
- package/esm2022/lib/toolbar/segmentation/segmentation-commit.mjs +12 -0
- package/esm2022/lib/toolbar/segmentation/segmentation-runner.mjs +108 -0
- package/esm2022/lib/toolbar/segmentation-tools/segmentation-tools.component.mjs +155 -0
- package/esm2022/lib/toolbar/stack-controls/stack-controls.component.mjs +121 -0
- package/esm2022/lib/toolbar/tool-kit/async-tool-status.mjs +37 -0
- package/esm2022/lib/toolbar/tool-kit/canvas-tool-manager.mjs +63 -0
- package/esm2022/lib/toolbar/tool-kit/canvas-tool.mjs +2 -0
- package/esm2022/lib/toolbar/tool-kit/frame-pixels.mjs +108 -0
- package/esm2022/lib/toolbar/tool-kit/mask-stroke-editor.mjs +306 -0
- package/esm2022/lib/toolbar/tool-kit/matrix-frame.mjs +61 -0
- package/esm2022/lib/toolbar/tool-kit/tool-overlay.mjs +140 -0
- package/esm2022/lib/toolbar/tool-kit/undo-gesture.mjs +24 -0
- package/esm2022/lib/toolbar/tool-slider/tool-slider.component.mjs +63 -0
- package/esm2022/lib/toolbar/toolbar-help-dialog/toolbar-help-dialog.component.mjs +50 -0
- package/esm2022/lib/toolbar/toolbar.component.mjs +84 -119
- package/esm2022/lib/toolbar/vertex-eraser/vertex-eraser-tool.service.mjs +93 -115
- package/esm2022/lib/toolbar/view-controls/view-controls.component.mjs +107 -0
- package/esm2022/lib/toolbar/wand/wand-region-grow.mjs +321 -0
- package/esm2022/lib/toolbar/wand/wand-tool.service.mjs +121 -416
- package/esm2022/lib/toolbar/wand/wand.service.mjs +30 -894
- package/esm2022/lib/toolbar/zoom-to-box/zoom-to-box-tool.service.mjs +48 -90
- package/esm2022/lib/util/mark-for-check.mjs +17 -0
- package/esm2022/lib/util/supersede.mjs +56 -0
- package/esm2022/lib/visualization.module.mjs +39 -141
- package/esm2022/lib/visualizer/floating-drag.directive.mjs +58 -0
- package/esm2022/lib/visualizer/region-actions.mjs +149 -0
- package/esm2022/lib/visualizer/region-load.mjs +123 -0
- package/esm2022/lib/visualizer/spatial-dataset-binder.mjs +163 -0
- package/esm2022/lib/visualizer/tool-modes.mjs +113 -0
- package/esm2022/lib/visualizer/viewer-shortcuts.mjs +167 -0
- package/esm2022/lib/visualizer/visualizer-context-menu.mjs +119 -0
- package/esm2022/lib/visualizer/volume-sections.mjs +175 -0
- package/esm2022/lib/visualizer.component.mjs +602 -1902
- package/esm2022/lib/workers/spatial-math-ops.mjs +43 -0
- package/esm2022/lib/workers/spatial-math-worker.mjs +10 -0
- package/esm2022/lib/workers/spatial-math.mjs +190 -0
- package/fesm2022/jax-data-science-sci-image-visualizer-jax-data-science-sci-image-visualizer-BKQhpbHv.mjs +47169 -0
- package/fesm2022/jax-data-science-sci-image-visualizer-jax-data-science-sci-image-visualizer-BKQhpbHv.mjs.map +1 -0
- package/fesm2022/jax-data-science-sci-image-visualizer-onnx-sam-session-z1IN-F7w.mjs +238 -0
- package/fesm2022/jax-data-science-sci-image-visualizer-onnx-sam-session-z1IN-F7w.mjs.map +1 -0
- package/fesm2022/jax-data-science-sci-image-visualizer-region-source-worker-CAqBjM5L.mjs +12 -0
- package/fesm2022/jax-data-science-sci-image-visualizer-region-source-worker-CAqBjM5L.mjs.map +1 -0
- package/fesm2022/jax-data-science-sci-image-visualizer-spatial-math-worker-BzVFFqGS.mjs +12 -0
- package/fesm2022/jax-data-science-sci-image-visualizer-spatial-math-worker-BzVFFqGS.mjs.map +1 -0
- package/fesm2022/jax-data-science-sci-image-visualizer.mjs +41 -34467
- package/fesm2022/jax-data-science-sci-image-visualizer.mjs.map +1 -1
- package/fesm2022/mask.worker.js +36 -917
- package/fesm2022/onnx-sam.worker.js +52 -16
- package/fesm2022/region-source.worker.js +1067 -0
- package/fesm2022/spatial-math.worker.js +471 -0
- package/fesm2022/tsne.worker.js +32 -15
- package/index.d.ts +19 -10
- package/lib/channel-histogram/channel-histogram.component.d.ts +53 -43
- package/lib/contracts/capabilities.contract.d.ts +4 -2
- package/lib/contracts/cell-segmenter.contract.d.ts +1 -0
- package/lib/contracts/channel-histogram-api.contract.d.ts +4 -0
- package/lib/contracts/color.d.ts +27 -0
- package/lib/contracts/colormap-lut.d.ts +19 -4
- package/lib/contracts/coordinate-transform.contract.d.ts +3 -3
- package/lib/contracts/display-types.d.ts +21 -0
- package/lib/contracts/image.contract.d.ts +4 -0
- package/lib/contracts/instance-segmenter.contract.d.ts +5 -0
- package/lib/contracts/intensity.d.ts +13 -2
- package/lib/contracts/plot-type.d.ts +3 -1
- package/lib/contracts/ports/image-state.port.d.ts +6 -2
- package/lib/contracts/ports/preferences.port.d.ts +4 -0
- package/lib/contracts/ports/region-io.port.d.ts +1 -0
- package/lib/contracts/ports/spatial-data.port.d.ts +4 -10
- package/lib/contracts/ports/tile-access.port.d.ts +1 -0
- package/lib/contracts/region-editor-api.contract.d.ts +85 -1
- package/lib/contracts/region-overlay.contract.d.ts +5 -0
- package/lib/contracts/region-store.contract.d.ts +22 -0
- package/lib/contracts/sam.contract.d.ts +7 -0
- package/lib/contracts/section-view.contract.d.ts +44 -0
- package/lib/contracts/semantic-segmenter.contract.d.ts +6 -0
- package/lib/contracts/spatial-dataset.contract.d.ts +19 -6
- package/lib/contracts/toolbar-tool.contract.d.ts +1 -0
- package/lib/contracts/visualizer.contract.d.ts +231 -54
- package/lib/contracts/viz-config.d.ts +9 -0
- package/lib/geometry/contour.d.ts +24 -0
- package/lib/geometry/loft.d.ts +22 -0
- package/lib/geometry/polylabel.d.ts +23 -0
- package/lib/geometry/raster.d.ts +42 -0
- package/lib/geometry/reconstruct.d.ts +54 -0
- package/lib/geometry/reslice-image.d.ts +33 -0
- package/lib/geometry/ring.d.ts +67 -0
- package/lib/geometry/section.d.ts +52 -0
- package/lib/hex-color-picker/hex-color-picker.component.d.ts +61 -27
- package/lib/implementations/base-store-visualizer.d.ts +61 -15
- package/lib/implementations/napari-js/napari-axes-gizmo.d.ts +36 -0
- package/lib/implementations/napari-js/napari-display-state.d.ts +76 -0
- package/lib/implementations/napari-js/napari-helpers.d.ts +129 -0
- package/lib/implementations/napari-js/napari-image-2d-scene.d.ts +162 -0
- package/lib/implementations/napari-js/napari-loading-badge.d.ts +4 -3
- package/lib/implementations/napari-js/napari-loading-state.d.ts +37 -0
- package/lib/implementations/napari-js/napari-region-mesh-pointer.d.ts +32 -0
- package/lib/implementations/napari-js/napari-region-overlay.d.ts +68 -71
- package/lib/implementations/napari-js/napari-scene.d.ts +126 -0
- package/lib/implementations/napari-js/napari-spatial-2d-scene.d.ts +163 -0
- package/lib/implementations/napari-js/napari-spatial-3d-scene.d.ts +212 -0
- package/lib/implementations/napari-js/napari-spatial-encoding.d.ts +114 -0
- package/lib/implementations/napari-js/napari-spatial-hover.d.ts +91 -0
- package/lib/implementations/napari-js/napari-spatial-scene.d.ts +118 -0
- package/lib/implementations/napari-js/napari-spatial-tiles.d.ts +56 -263
- package/lib/implementations/napari-js/napari-spatial-tooltip.d.ts +1 -1
- package/lib/implementations/napari-js/napari-surface-scene.d.ts +76 -0
- package/lib/implementations/napari-js/napari-tile-client.d.ts +214 -0
- package/lib/implementations/napari-js/napari-tool-bridge.d.ts +179 -0
- package/lib/implementations/napari-js/napari-visualizer.service.d.ts +169 -883
- package/lib/implementations/napari-js/napari-volume-region-meshes.d.ts +66 -0
- package/lib/implementations/napari-js/napari-volume-scene.d.ts +148 -0
- package/lib/implementations/napari-js/napari-volume-slice-planes.d.ts +43 -0
- package/lib/implementations/napari-js/napari-volume-z-handle.d.ts +8 -12
- package/lib/implementations/napari-js/region-overlay/overlay-projection.d.ts +59 -0
- package/lib/implementations/napari-js/region-overlay/region-edit.d.ts +15 -0
- package/lib/implementations/napari-js/region-overlay/region-svg-renderer.d.ts +54 -0
- package/lib/implementations/napari-js/spatial-tiles/categorical-lookup.d.ts +26 -0
- package/lib/implementations/napari-js/spatial-tiles/cell-layers.d.ts +70 -0
- package/lib/implementations/napari-js/spatial-tiles/density-layer.d.ts +61 -0
- package/lib/implementations/napari-js/spatial-tiles/layer-groups.d.ts +67 -0
- package/lib/implementations/napari-js/spatial-tiles/plan-context.d.ts +38 -0
- package/lib/implementations/napari-js/spatial-tiles/transcript-hover.d.ts +71 -0
- package/lib/implementations/napari-js/spatial-tiles/transcript-jobs.d.ts +105 -0
- package/lib/implementations/napari-js/spatial-tiles/transcript-layers.d.ts +56 -0
- package/lib/implementations/osd/display-pipeline.d.ts +38 -9
- package/lib/implementations/osd/histogram-sampler.d.ts +22 -12
- package/lib/implementations/osd/openseadragon-viewer-options.d.ts +35 -0
- package/lib/implementations/osd/openseadragon-visualizer.service.d.ts +78 -354
- package/lib/implementations/osd/osd-coordinate-transform.d.ts +2 -1
- package/lib/implementations/osd/osd-coords.d.ts +6 -4
- package/lib/implementations/osd/osd-export.d.ts +36 -0
- package/lib/implementations/osd/osd-lib.d.ts +7 -0
- package/lib/implementations/osd/osd-navigator-chrome.d.ts +69 -0
- package/lib/implementations/osd/osd-pixel-readback.d.ts +22 -0
- package/lib/implementations/osd/osd-region-overlay-draw.d.ts +38 -0
- package/lib/implementations/osd/osd-region-overlay.d.ts +46 -51
- package/lib/implementations/osd/osd-scale-bar.d.ts +8 -6
- package/lib/implementations/osd/osd-tile-source.d.ts +49 -0
- package/lib/implementations/osd/osd-viewer-like.d.ts +100 -0
- package/lib/implementations/osd/osd-viewer-mount.d.ts +14 -0
- package/lib/implementations/osd/osd-viewport.d.ts +77 -0
- package/lib/implementations/osd/osd-zoom.d.ts +6 -0
- package/lib/implementations/osd/simple-source.d.ts +161 -0
- package/lib/implementations/osd/slice-cache.d.ts +12 -3
- package/lib/implementations/osd/tile-client.d.ts +11 -14
- package/lib/implementations/osd/tile-recolor.d.ts +141 -0
- package/lib/implementations/plotly/omics-trace-builders.d.ts +32 -20
- package/lib/implementations/plotly/plotly-image-loader.d.ts +49 -0
- package/lib/implementations/plotly/plotly-image-recolor.d.ts +75 -0
- package/lib/implementations/plotly/plotly-intensity-inset.d.ts +8 -0
- package/lib/implementations/plotly/plotly-isosurface-controls.d.ts +38 -0
- package/lib/implementations/plotly/plotly-layouts.d.ts +188 -0
- package/lib/implementations/plotly/plotly-readback.d.ts +41 -0
- package/lib/implementations/plotly/plotly-region-overlay.d.ts +2 -2
- package/lib/implementations/plotly/plotly-shape-projection.d.ts +92 -0
- package/lib/implementations/plotly/plotly-trace-builders.d.ts +23 -12
- package/lib/implementations/plotly/plotly-zoom-controller.d.ts +86 -0
- package/lib/implementations/plotly/plotly.service.d.ts +136 -401
- package/lib/implementations/region-centroids.d.ts +14 -0
- package/lib/implementations/simple-slice-access.service.d.ts +7 -4
- package/lib/implementations/spatial-data-http/spatial-data-http.service.d.ts +42 -18
- package/lib/implementations/spatial-data-http/spatial-wire.d.ts +34 -9
- package/lib/implementations/tile-server/index.d.ts +5 -0
- package/lib/implementations/tile-server/native-histogram.d.ts +25 -0
- package/lib/implementations/tile-server/poll-descriptor.d.ts +39 -0
- package/lib/implementations/tile-server/tile-protocol.d.ts +83 -0
- package/lib/implementations/tile-server/transport.d.ts +62 -0
- package/lib/intensity/intensity-profile.d.ts +66 -0
- package/lib/intensity/intensity-profile.service.d.ts +108 -0
- package/lib/intensity-inset/intensity-inset.component.d.ts +58 -0
- package/lib/models/bezier.d.ts +0 -5
- package/lib/models/class-preset.d.ts +25 -0
- package/lib/models/geometry.d.ts +14 -48
- package/lib/models/polygon-edit.d.ts +72 -0
- package/lib/models/polygon-factory.d.ts +45 -0
- package/lib/models/region-clone.d.ts +20 -0
- package/lib/models/region-geojson.d.ts +57 -0
- package/lib/models/region.d.ts +59 -4
- package/lib/models/shape.d.ts +8 -0
- package/lib/plot-mode/contribution-host.d.ts +125 -0
- package/lib/plot-mode/plot-type-menu.d.ts +60 -0
- package/lib/plot-mode/tool-params-model.d.ts +49 -0
- package/lib/plot.utilities.d.ts +19 -30
- package/lib/processing/processing-image.d.ts +5 -2
- package/lib/provide-visualization.d.ts +19 -2
- package/lib/region-editor/class-tree/class-tree.component.d.ts +78 -0
- package/lib/region-editor/class-tree/class-tree.d.ts +31 -0
- package/lib/region-editor/classes-panel/classes-panel.component.d.ts +86 -0
- package/lib/region-editor/file-stem.d.ts +7 -0
- package/lib/region-editor/manage-classes-dialog/manage-classes-dialog.component.d.ts +45 -0
- package/lib/region-editor/mask-export.service.d.ts +54 -0
- package/lib/region-editor/mask-raster.d.ts +2 -8
- package/lib/region-editor/region-color-dialog/region-color-dialog.component.d.ts +29 -0
- package/lib/region-editor/region-editor-help/region-editor-help.component.d.ts +11 -0
- package/lib/region-editor/region-editor.component.d.ts +283 -200
- package/lib/region-editor/region-metrics.d.ts +34 -0
- package/lib/region-editor/region-persistence.service.d.ts +77 -0
- package/lib/region-editor/region-table/region-table.component.d.ts +89 -0
- package/lib/region-editor/save-mask-dialog/save-mask-dialog.component.d.ts +36 -0
- package/lib/region-editor/save-regions-dialog/save-regions-dialog.component.d.ts +37 -0
- package/lib/region-ops.service.d.ts +1 -7
- package/lib/region-overlay/region-geometry.d.ts +158 -0
- package/lib/region-overlay/region-hit-test.d.ts +38 -0
- package/lib/region-overlay/region-source-layer.d.ts +96 -0
- package/lib/region-overlay/region-style.d.ts +52 -0
- package/lib/region-overlay/svg-region-renderer.d.ts +110 -0
- package/lib/region-source/http-region-source.d.ts +45 -0
- package/lib/region-source/region-source-ops.d.ts +89 -0
- package/lib/region-source/region-source-worker.d.ts +7 -0
- package/lib/region-source/region-source.d.ts +82 -0
- package/lib/region-source/region-tiles.d.ts +289 -0
- package/lib/region-source/worker-region-source.d.ts +65 -0
- package/lib/render-orchestrator.d.ts +6 -2
- package/lib/render-session.d.ts +75 -0
- package/lib/routing-visualizer.service.d.ts +248 -59
- package/lib/section-pane/section-pane.component.d.ts +47 -0
- package/lib/spatial/density-raster.d.ts +6 -0
- package/lib/spatial/embedding-compute-coordinator.d.ts +123 -0
- package/lib/spatial/embedding-compute.d.ts +21 -2
- package/lib/spatial/glyphs.d.ts +16 -0
- package/lib/spatial/lod.d.ts +94 -0
- package/lib/spatial/spatial-controls.facade.d.ts +64 -0
- package/lib/spatial/spatial-density.d.ts +15 -5
- package/lib/spatial/spatial-encoding.d.ts +11 -44
- package/lib/spatial/spatial-expression.d.ts +40 -22
- package/lib/spatial/spatial-framing.d.ts +1 -0
- package/lib/spatial/spatial-heatmap.d.ts +2 -0
- package/lib/spatial/spatial-hover.d.ts +4 -16
- package/lib/spatial/spatial-panel-model.d.ts +135 -0
- package/lib/spatial/spatial-selection.d.ts +21 -26
- package/lib/spatial/spatial-tile-merge.d.ts +41 -0
- package/lib/spatial/spatial-tiles.d.ts +9 -256
- package/lib/spatial/stats.d.ts +38 -0
- package/lib/spatial/transcript-grouping.d.ts +119 -0
- package/lib/spatial-controls/spatial-cells-panel/spatial-cells-panel.component.d.ts +64 -0
- package/lib/spatial-controls/spatial-charts/chart-data-model.d.ts +153 -0
- package/lib/spatial-controls/spatial-charts/chart-help.d.ts +69 -0
- package/lib/spatial-controls/spatial-charts/plotly-chart-host.d.ts +98 -0
- package/lib/spatial-controls/spatial-charts/spatial-chart-window/spatial-chart-window.component.d.ts +26 -0
- package/lib/spatial-controls/spatial-charts/spatial-charts.component.d.ts +101 -260
- package/lib/spatial-controls/spatial-charts/spatial-embedding-controls/spatial-embedding-controls.component.d.ts +43 -0
- package/lib/spatial-controls/spatial-charts/spatial-heatmap-controls/spatial-heatmap-controls.component.d.ts +27 -0
- package/lib/spatial-controls/spatial-controls.component.d.ts +68 -448
- package/lib/spatial-controls/spatial-gene-picker.d.ts +86 -0
- package/lib/spatial-controls/spatial-gene-tree/spatial-gene-tree.component.d.ts +102 -0
- package/lib/spatial-controls/spatial-groups-panel/spatial-groups-panel.component.d.ts +72 -0
- package/lib/spatial-controls/spatial-key/spatial-key.component.d.ts +66 -0
- package/lib/spatial-controls/spatial-key/spatial-key.model.d.ts +33 -0
- package/lib/spatial-controls/spatial-marker-genes-form/spatial-marker-genes-form.component.d.ts +64 -0
- package/lib/spatial-controls/spatial-observations-panel/spatial-observations-panel.component.d.ts +117 -0
- package/lib/spatial-controls/spatial-transcripts-panel/spatial-transcripts-panel.component.d.ts +142 -0
- package/lib/store/class-color.util.d.ts +39 -2
- package/lib/store/class-signatures.d.ts +11 -0
- package/lib/store/region-history.d.ts +66 -0
- package/lib/store/region-scope-cache.d.ts +65 -0
- package/lib/store/region-selection.d.ts +36 -0
- package/lib/store/region-source-scope.d.ts +68 -0
- package/lib/store/region-store.service.d.ts +312 -116
- package/lib/store/visualizer-store.service.d.ts +32 -33
- package/lib/toast-outlets.d.ts +4 -3
- package/lib/toolbar/brush/brush-tool.service.d.ts +31 -98
- package/lib/toolbar/canvas-tools.d.ts +20 -0
- package/lib/toolbar/crop/slide-crop.d.ts +10 -4
- package/lib/toolbar/plot-type-selector/plot-type-selector.component.d.ts +38 -0
- package/lib/toolbar/region-tools/region-tool-buttons.d.ts +21 -0
- package/lib/toolbar/region-tools/region-tools.component.d.ts +62 -0
- package/lib/toolbar/segmentation/cell-segment-tool.service.d.ts +10 -14
- package/lib/toolbar/segmentation/cellpose-segmenter.service.d.ts +12 -2
- package/lib/toolbar/segmentation/onnx-sam-session.d.ts +22 -3
- package/lib/toolbar/segmentation/pending-calls.d.ts +31 -0
- package/lib/toolbar/segmentation/sam-model-registry.d.ts +9 -3
- package/lib/toolbar/segmentation/sam-onnx-core.d.ts +18 -5
- package/lib/toolbar/segmentation/sam-point-tool.service.d.ts +46 -32
- package/lib/toolbar/segmentation/sam-prompt.d.ts +7 -31
- package/lib/toolbar/segmentation/sam-session.service.d.ts +74 -0
- package/lib/toolbar/segmentation/sam-tool.service.d.ts +23 -30
- package/lib/toolbar/segmentation/segmentation-commit.d.ts +8 -0
- package/lib/toolbar/segmentation/segmentation-runner.d.ts +52 -0
- package/lib/toolbar/segmentation-tools/segmentation-tools.component.d.ts +87 -0
- package/lib/toolbar/stack-controls/stack-controls.component.d.ts +51 -0
- package/lib/toolbar/tool-kit/async-tool-status.d.ts +21 -0
- package/lib/toolbar/tool-kit/canvas-tool-manager.d.ts +36 -0
- package/lib/toolbar/tool-kit/canvas-tool.d.ts +86 -0
- package/lib/toolbar/tool-kit/frame-pixels.d.ts +45 -0
- package/lib/toolbar/tool-kit/mask-stroke-editor.d.ts +125 -0
- package/lib/toolbar/tool-kit/matrix-frame.d.ts +40 -0
- package/lib/toolbar/tool-kit/tool-overlay.d.ts +60 -0
- package/lib/toolbar/tool-kit/undo-gesture.d.ts +17 -0
- package/lib/toolbar/tool-slider/tool-slider.component.d.ts +33 -0
- package/lib/toolbar/toolbar-help-dialog/toolbar-help-dialog.component.d.ts +24 -0
- package/lib/toolbar/toolbar.component.d.ts +55 -84
- package/lib/toolbar/vertex-eraser/vertex-eraser-tool.service.d.ts +33 -40
- package/lib/toolbar/view-controls/view-controls.component.d.ts +54 -0
- package/lib/toolbar/wand/wand-region-grow.d.ts +49 -0
- package/lib/toolbar/wand/wand-tool.service.d.ts +39 -124
- package/lib/toolbar/wand/wand.service.d.ts +22 -116
- package/lib/toolbar/zoom-to-box/zoom-to-box-tool.service.d.ts +17 -37
- package/lib/util/mark-for-check.d.ts +11 -0
- package/lib/util/supersede.d.ts +53 -0
- package/lib/visualization.module.d.ts +18 -39
- package/lib/visualizer/floating-drag.directive.d.ts +30 -0
- package/lib/visualizer/region-actions.d.ts +54 -0
- package/lib/visualizer/region-load.d.ts +46 -0
- package/lib/visualizer/spatial-dataset-binder.d.ts +74 -0
- package/lib/visualizer/tool-modes.d.ts +49 -0
- package/lib/visualizer/viewer-shortcuts.d.ts +71 -0
- package/lib/visualizer/visualizer-context-menu.d.ts +55 -0
- package/lib/visualizer/volume-sections.d.ts +64 -0
- package/lib/visualizer.component.d.ts +232 -447
- package/lib/workers/spatial-math-ops.d.ts +65 -0
- package/lib/workers/spatial-math-worker.d.ts +7 -0
- package/lib/workers/spatial-math.d.ts +74 -0
- package/package.json +12 -3
- package/src/lib/assets/slice.svg +23 -0
- package/src/lib/styles/_viz-icons-rules.scss +73 -0
- package/src/lib/styles/viz-icons.scss +14 -0
- package/esm2022/lib/implementations/napari-js/napari-axes-labels.mjs +0 -97
- package/esm2022/lib/implementations/napari-js/napari-navigator.mjs +0 -195
- package/esm2022/lib/implementations/napari-js/napari-scale-bar.mjs +0 -92
- package/fesm2022/jax-data-science-sci-image-visualizer-onnx-sam-session-BwP-A11m.mjs +0 -329
- package/fesm2022/jax-data-science-sci-image-visualizer-onnx-sam-session-BwP-A11m.mjs.map +0 -1
- package/lib/implementations/napari-js/napari-axes-labels.d.ts +0 -49
- package/lib/implementations/napari-js/napari-navigator.d.ts +0 -72
- package/lib/implementations/napari-js/napari-scale-bar.d.ts +0 -35
- package/src/lib/assets/cell-detection.svg +0 -37
- package/src/lib/assets/click.svg +0 -1
- package/src/lib/assets/colormap-luts.json +0 -1
- package/src/lib/assets/edit-selection-white.svg +0 -47
- package/src/lib/assets/icons/colormap-earth.png +0 -0
- package/src/lib/assets/icons/colormap-placeholder.png +0 -0
- package/src/lib/assets/icons/colormap-pubu.png +0 -0
- package/src/lib/assets/interactive-segmentation-cursor.svg +0 -1
- package/src/lib/assets/picture-segmentation.svg +0 -43
- package/src/lib/assets/test/download-379.svg +0 -1
- package/src/lib/assets/test/download-98.svg +0 -1
- package/src/lib/assets/test/json-1.svg +0 -1
- package/src/lib/assets/test/load-53.svg +0 -1
- package/src/lib/assets/test/mask-44.svg +0 -1
- package/src/lib/assets/test/mask-download-44.svg +0 -15
- package/src/lib/assets/test/mask-save-44.svg +0 -11
- package/src/lib/assets/test/overlay-1.svg +0 -1
- package/src/lib/assets/test/overlay-4.svg +0 -1
- package/src/lib/assets/test/region-26.svg +0 -1
- package/src/lib/assets/test/save-56.svg +0 -1
- package/src/lib/assets/test/upload-43.svg +0 -1
|
@@ -0,0 +1,129 @@
|
|
|
1
|
+
/** Opacity of a region's surface in the volume. */
|
|
2
|
+
export const REGION_MESH_OPACITY = 0.55;
|
|
3
|
+
/** While some surfaces are highlighted: theirs (near opaque, so their shape reads) … */
|
|
4
|
+
export const REGION_MESH_HIGHLIGHT_OPACITY = 0.9;
|
|
5
|
+
/** … and the others' (ghosted: still there for context, not in the way). */
|
|
6
|
+
export const REGION_MESH_DIMMED_OPACITY = 0.12;
|
|
7
|
+
/**
|
|
8
|
+
* The region reconstructions shown in a volume view: one translucent surface per region, in its
|
|
9
|
+
* colour, placed in the volume's world box (pixel x, y and slice z mapped onto it the way the
|
|
10
|
+
* volume maps its voxels) and re-placed when the volume's Z is stretched. A surface is updated in
|
|
11
|
+
* place (`setData`, `color`) rather than added again, and picked by napari-js (`pickSurface`).
|
|
12
|
+
*
|
|
13
|
+
* Highlighting is focus + context: the highlighted surfaces turn near opaque and the others fade
|
|
14
|
+
* to a ghost, so the selection stands out while staying in place among its neighbours.
|
|
15
|
+
*/
|
|
16
|
+
export class VolumeRegionMeshes {
|
|
17
|
+
constructor(viewer) {
|
|
18
|
+
this.viewer = viewer;
|
|
19
|
+
this.layers = new Map();
|
|
20
|
+
this.highlighted = new Set();
|
|
21
|
+
this.hidden = new Set();
|
|
22
|
+
/** The meshes to show (kept while the volume has no frame yet). */
|
|
23
|
+
this.wanted = [];
|
|
24
|
+
this.frame = null;
|
|
25
|
+
}
|
|
26
|
+
/** Show exactly `meshes` (adding, keeping or removing surfaces). */
|
|
27
|
+
set(meshes) {
|
|
28
|
+
this.wanted = meshes;
|
|
29
|
+
this.sync();
|
|
30
|
+
}
|
|
31
|
+
/** Follow the volume's frame (it opened, or its Z was stretched): re-place every surface. */
|
|
32
|
+
setFrame(frame) {
|
|
33
|
+
this.frame = frame;
|
|
34
|
+
for (const e of this.layers.values())
|
|
35
|
+
e.layer.setData(toWorld(e.mesh.vertices, frame), e.mesh.faces);
|
|
36
|
+
this.sync();
|
|
37
|
+
}
|
|
38
|
+
/** Highlight the surfaces of these keys (none: every surface as usual). */
|
|
39
|
+
setHighlight(keys) {
|
|
40
|
+
this.highlighted = new Set(keys);
|
|
41
|
+
for (const [key, e] of this.layers)
|
|
42
|
+
e.layer.opacity = this.opacityOf(key);
|
|
43
|
+
this.viewer.requestRender();
|
|
44
|
+
}
|
|
45
|
+
/** Hide the surfaces of these keys (they are kept, so showing them again is instant). */
|
|
46
|
+
setHidden(keys) {
|
|
47
|
+
this.hidden = new Set(keys);
|
|
48
|
+
for (const [key, e] of this.layers)
|
|
49
|
+
e.layer.visible = !this.hidden.has(key);
|
|
50
|
+
this.viewer.requestRender();
|
|
51
|
+
}
|
|
52
|
+
/** The front-most surface under screen point (`x`, `y`) (canvas CSS px), or null. */
|
|
53
|
+
pickAt(x, y) {
|
|
54
|
+
if (!this.layers.size)
|
|
55
|
+
return null;
|
|
56
|
+
const ours = new Map([...this.layers.values()].map((e) => [e.layer, e.mesh]));
|
|
57
|
+
const hit = this.viewer.pickSurface(x, y, { pickable: (layer) => ours.has(layer) });
|
|
58
|
+
return hit ? (ours.get(hit.layer) ?? null) : null;
|
|
59
|
+
}
|
|
60
|
+
/** The meshes shown. */
|
|
61
|
+
get shown() {
|
|
62
|
+
return [...this.layers.values()].map((e) => e.mesh);
|
|
63
|
+
}
|
|
64
|
+
clear() {
|
|
65
|
+
for (const [key, e] of [...this.layers])
|
|
66
|
+
this.remove(key, e.layer);
|
|
67
|
+
this.wanted = [];
|
|
68
|
+
}
|
|
69
|
+
sync() {
|
|
70
|
+
const keep = new Map(this.wanted.map((m) => [m.key, m]));
|
|
71
|
+
for (const [key, e] of [...this.layers]) {
|
|
72
|
+
const want = keep.get(key);
|
|
73
|
+
if (!want || !want.faces.length) {
|
|
74
|
+
this.remove(key, e.layer);
|
|
75
|
+
continue;
|
|
76
|
+
}
|
|
77
|
+
// Rebuilt or recoloured: the same surface, updated in place.
|
|
78
|
+
if (want.vertices !== e.mesh.vertices && this.frame) {
|
|
79
|
+
e.layer.setData(toWorld(want.vertices, this.frame), want.faces);
|
|
80
|
+
}
|
|
81
|
+
if (want.color !== e.mesh.color)
|
|
82
|
+
e.layer.color = want.color;
|
|
83
|
+
e.mesh = want;
|
|
84
|
+
}
|
|
85
|
+
if (this.frame) {
|
|
86
|
+
for (const mesh of this.wanted)
|
|
87
|
+
if (!this.layers.has(mesh.key) && mesh.faces.length)
|
|
88
|
+
this.add(mesh);
|
|
89
|
+
}
|
|
90
|
+
this.viewer.requestRender();
|
|
91
|
+
}
|
|
92
|
+
add(mesh) {
|
|
93
|
+
const frame = this.frame;
|
|
94
|
+
const layer = this.viewer.addSurface(toWorld(mesh.vertices, frame), mesh.faces, undefined, {
|
|
95
|
+
name: `region ${mesh.key}`,
|
|
96
|
+
color: mesh.color,
|
|
97
|
+
opacity: this.opacityOf(mesh.key),
|
|
98
|
+
blending: 'translucent',
|
|
99
|
+
fit: 'never',
|
|
100
|
+
});
|
|
101
|
+
layer.visible = !this.hidden.has(mesh.key);
|
|
102
|
+
this.layers.set(mesh.key, { mesh, layer });
|
|
103
|
+
}
|
|
104
|
+
opacityOf(key) {
|
|
105
|
+
if (!this.highlighted.size)
|
|
106
|
+
return REGION_MESH_OPACITY;
|
|
107
|
+
return this.highlighted.has(key) ? REGION_MESH_HIGHLIGHT_OPACITY : REGION_MESH_DIMMED_OPACITY;
|
|
108
|
+
}
|
|
109
|
+
remove(key, layer) {
|
|
110
|
+
this.viewer.layers.remove(layer);
|
|
111
|
+
this.layers.delete(key);
|
|
112
|
+
}
|
|
113
|
+
}
|
|
114
|
+
/**
|
|
115
|
+
* Image px / slice coordinates → the volume's centred world box: pixel x of a `w`-wide image
|
|
116
|
+
* spans the box's width, slice k sits at the middle of its share of the box's depth.
|
|
117
|
+
*/
|
|
118
|
+
export function toWorld(vertices, frame) {
|
|
119
|
+
const [w, h, d] = frame.size;
|
|
120
|
+
const [ww, wh, wd] = frame.world;
|
|
121
|
+
const out = new Float32Array(vertices.length);
|
|
122
|
+
for (let i = 0; i < vertices.length; i += 3) {
|
|
123
|
+
out[i] = (vertices[i] / w - 0.5) * ww;
|
|
124
|
+
out[i + 1] = (vertices[i + 1] / h - 0.5) * wh;
|
|
125
|
+
out[i + 2] = ((vertices[i + 2] + 0.5) / d - 0.5) * wd;
|
|
126
|
+
}
|
|
127
|
+
return out;
|
|
128
|
+
}
|
|
129
|
+
//# sourceMappingURL=data:application/json;base64,{"version":3,"file":"napari-volume-region-meshes.js","sourceRoot":"","sources":["../../../../../src/lib/implementations/napari-js/napari-volume-region-meshes.ts"],"names":[],"mappings":"AAsBA,mDAAmD;AACnD,MAAM,CAAC,MAAM,mBAAmB,GAAG,IAAI,CAAC;AACxC,wFAAwF;AACxF,MAAM,CAAC,MAAM,6BAA6B,GAAG,GAAG,CAAC;AACjD,4EAA4E;AAC5E,MAAM,CAAC,MAAM,0BAA0B,GAAG,IAAI,CAAC;AAE/C;;;;;;;;GAQG;AACH,MAAM,OAAO,kBAAkB;IAQ7B,YAA6B,MAAc;QAAd,WAAM,GAAN,MAAM,CAAQ;QAP1B,WAAM,GAAG,IAAI,GAAG,EAAuD,CAAC;QACjF,gBAAW,GAAwB,IAAI,GAAG,EAAE,CAAC;QAC7C,WAAM,GAAwB,IAAI,GAAG,EAAE,CAAC;QAChD,mEAAmE;QAC3D,WAAM,GAA4B,EAAE,CAAC;QACrC,UAAK,GAAuB,IAAI,CAAC;IAEK,CAAC;IAE/C,oEAAoE;IACpE,GAAG,CAAC,MAA+B;QACjC,IAAI,CAAC,MAAM,GAAG,MAAM,CAAC;QACrB,IAAI,CAAC,IAAI,EAAE,CAAC;IACd,CAAC;IAED,6FAA6F;IAC7F,QAAQ,CAAC,KAAkB;QACzB,IAAI,CAAC,KAAK,GAAG,KAAK,CAAC;QACnB,KAAK,MAAM,CAAC,IAAI,IAAI,CAAC,MAAM,CAAC,MAAM,EAAE;YAAE,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC,CAAC,IAAI,CAAC,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;QACrG,IAAI,CAAC,IAAI,EAAE,CAAC;IACd,CAAC;IAED,2EAA2E;IAC3E,YAAY,CAAC,IAAsB;QACjC,IAAI,CAAC,WAAW,GAAG,IAAI,GAAG,CAAC,IAAI,CAAC,CAAC;QACjC,KAAK,MAAM,CAAC,GAAG,EAAE,CAAC,CAAC,IAAI,IAAI,CAAC,MAAM;YAAE,CAAC,CAAC,KAAK,CAAC,OAAO,GAAG,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC;QAC1E,IAAI,CAAC,MAAM,CAAC,aAAa,EAAE,CAAC;IAC9B,CAAC;IAED,yFAAyF;IACzF,SAAS,CAAC,IAAsB;QAC9B,IAAI,CAAC,MAAM,GAAG,IAAI,GAAG,CAAC,IAAI,CAAC,CAAC;QAC5B,KAAK,MAAM,CAAC,GAAG,EAAE,CAAC,CAAC,IAAI,IAAI,CAAC,MAAM;YAAE,CAAC,CAAC,KAAK,CAAC,OAAO,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;QAC5E,IAAI,CAAC,MAAM,CAAC,aAAa,EAAE,CAAC;IAC9B,CAAC;IAED,qFAAqF;IACrF,MAAM,CAAC,CAAS,EAAE,CAAS;QACzB,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI;YAAE,OAAO,IAAI,CAAC;QACnC,MAAM,IAAI,GAAG,IAAI,GAAG,CAAC,CAAC,GAAG,IAAI,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QAC9E,MAAM,GAAG,GAAG,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,QAAQ,EAAE,CAAC,KAAK,EAAE,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;QACpF,OAAO,GAAG,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;IACpD,CAAC;IAED,wBAAwB;IACxB,IAAI,KAAK;QACP,OAAO,CAAC,GAAG,IAAI,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;IACtD,CAAC;IAED,KAAK;QACH,KAAK,MAAM,CAAC,GAAG,EAAE,CAAC,CAAC,IAAI,CAAC,GAAG,IAAI,CAAC,MAAM,CAAC;YAAE,IAAI,CAAC,MAAM,CAAC,GAAG,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC;QACnE,IAAI,CAAC,MAAM,GAAG,EAAE,CAAC;IACnB,CAAC;IAEO,IAAI;QACV,MAAM,IAAI,GAAG,IAAI,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;QACzD,KAAK,MAAM,CAAC,GAAG,EAAE,CAAC,CAAC,IAAI,CAAC,GAAG,IAAI,CAAC,MAAM,CAAC,EAAE,CAAC;YACxC,MAAM,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;YAC3B,IAAI,CAAC,IAAI,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC;gBAChC,IAAI,CAAC,MAAM,CAAC,GAAG,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC;gBAC1B,SAAS;YACX,CAAC;YACD,6DAA6D;YAC7D,IAAI,IAAI,CAAC,QAAQ,KAAK,CAAC,CAAC,IAAI,CAAC,QAAQ,IAAI,IAAI,CAAC,KAAK,EAAE,CAAC;gBACpD,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,OAAO,CAAC,IAAI,CAAC,QAAQ,EAAE,IAAI,CAAC,KAAK,CAAC,EAAE,IAAI,CAAC,KAAK,CAAC,CAAC;YAClE,CAAC;YACD,IAAI,IAAI,CAAC,KAAK,KAAK,CAAC,CAAC,IAAI,CAAC,KAAK;gBAAE,CAAC,CAAC,KAAK,CAAC,KAAK,GAAG,IAAI,CAAC,KAAK,CAAC;YAC5D,CAAC,CAAC,IAAI,GAAG,IAAI,CAAC;QAChB,CAAC;QACD,IAAI,IAAI,CAAC,KAAK,EAAE,CAAC;YACf,KAAK,MAAM,IAAI,IAAI,IAAI,CAAC,MAAM;gBAAE,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,IAAI,CAAC,KAAK,CAAC,MAAM;oBAAE,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;QACtG,CAAC;QACD,IAAI,CAAC,MAAM,CAAC,aAAa,EAAE,CAAC;IAC9B,CAAC;IAEO,GAAG,CAAC,IAAkB;QAC5B,MAAM,KAAK,GAAG,IAAI,CAAC,KAAoB,CAAC;QACxC,MAAM,KAAK,GAAG,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,OAAO,CAAC,IAAI,CAAC,QAAQ,EAAE,KAAK,CAAC,EAAE,IAAI,CAAC,KAAK,EAAE,SAAS,EAAE;YACzF,IAAI,EAAE,UAAU,IAAI,CAAC,GAAG,EAAE;YAC1B,KAAK,EAAE,IAAI,CAAC,KAAK;YACjB,OAAO,EAAE,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,GAAG,CAAC;YACjC,QAAQ,EAAE,aAAa;YACvB,GAAG,EAAE,OAAO;SACb,CAAC,CAAC;QACH,KAAK,CAAC,OAAO,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QAC3C,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,EAAE,EAAE,IAAI,EAAE,KAAK,EAAE,CAAC,CAAC;IAC7C,CAAC;IAEO,SAAS,CAAC,GAAW;QAC3B,IAAI,CAAC,IAAI,CAAC,WAAW,CAAC,IAAI;YAAE,OAAO,mBAAmB,CAAC;QACvD,OAAO,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,6BAA6B,CAAC,CAAC,CAAC,0BAA0B,CAAC;IAChG,CAAC;IAEO,MAAM,CAAC,GAAW,EAAE,KAAmB;QAC7C,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;QACjC,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;IAC1B,CAAC;CACF;AAED;;;GAGG;AACH,MAAM,UAAU,OAAO,CAAC,QAAsB,EAAE,KAAkB;IAChE,MAAM,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,GAAG,KAAK,CAAC,IAAI,CAAC;IAC7B,MAAM,CAAC,EAAE,EAAE,EAAE,EAAE,EAAE,CAAC,GAAG,KAAK,CAAC,KAAK,CAAC;IACjC,MAAM,GAAG,GAAG,IAAI,YAAY,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC;IAC9C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;QAC5C,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,GAAG,CAAC,GAAG,EAAE,CAAC;QACtC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,GAAG,GAAG,CAAC,GAAG,EAAE,CAAC;QAC9C,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,QAAQ,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAC,GAAG,CAAC,GAAG,GAAG,CAAC,GAAG,EAAE,CAAC;IACxD,CAAC;IACD,OAAO,GAAG,CAAC;AACb,CAAC","sourcesContent":["import type { SurfaceLayer, Viewer } from 'napari-js';\n\n/** A region's 3D reconstruction to show in the volume: a mesh in image px (x, y) and slices (z). */\nexport interface RegionMesh3D {\n  /** Identity (a class name): a mesh with the same key and arrays is kept, not rebuilt. */\n  key: string;\n  /** `#rrggbb`. */\n  color: string;\n  /** What hovering it shows (\"HPF · Hippocampal formation\"); default: the key. */\n  label?: string;\n  vertices: Float32Array;\n  faces: Uint32Array;\n}\n\n/** Where the stack sits in the volume's world: its full size, and the centred world box it fills. */\nexport interface VolumeFrame {\n  /** Image width, height (px) and slice count. */\n  size: [number, number, number];\n  /** The world box (centred on the origin), Z as currently stretched. */\n  world: [number, number, number];\n}\n\n/** Opacity of a region's surface in the volume. */\nexport const REGION_MESH_OPACITY = 0.55;\n/** While some surfaces are highlighted: theirs (near opaque, so their shape reads) … */\nexport const REGION_MESH_HIGHLIGHT_OPACITY = 0.9;\n/** … and the others' (ghosted: still there for context, not in the way). */\nexport const REGION_MESH_DIMMED_OPACITY = 0.12;\n\n/**\n * The region reconstructions shown in a volume view: one translucent surface per region, in its\n * colour, placed in the volume's world box (pixel x, y and slice z mapped onto it the way the\n * volume maps its voxels) and re-placed when the volume's Z is stretched. A surface is updated in\n * place (`setData`, `color`) rather than added again, and picked by napari-js (`pickSurface`).\n *\n * Highlighting is focus + context: the highlighted surfaces turn near opaque and the others fade\n * to a ghost, so the selection stands out while staying in place among its neighbours.\n */\nexport class VolumeRegionMeshes {\n  private readonly layers = new Map<string, { mesh: RegionMesh3D; layer: SurfaceLayer }>();\n  private highlighted: ReadonlySet<string> = new Set();\n  private hidden: ReadonlySet<string> = new Set();\n  /** The meshes to show (kept while the volume has no frame yet). */\n  private wanted: readonly RegionMesh3D[] = [];\n  private frame: VolumeFrame | null = null;\n\n  constructor(private readonly viewer: Viewer) {}\n\n  /** Show exactly `meshes` (adding, keeping or removing surfaces). */\n  set(meshes: readonly RegionMesh3D[]): void {\n    this.wanted = meshes;\n    this.sync();\n  }\n\n  /** Follow the volume's frame (it opened, or its Z was stretched): re-place every surface. */\n  setFrame(frame: VolumeFrame): void {\n    this.frame = frame;\n    for (const e of this.layers.values()) e.layer.setData(toWorld(e.mesh.vertices, frame), e.mesh.faces);\n    this.sync();\n  }\n\n  /** Highlight the surfaces of these keys (none: every surface as usual). */\n  setHighlight(keys: Iterable<string>): void {\n    this.highlighted = new Set(keys);\n    for (const [key, e] of this.layers) e.layer.opacity = this.opacityOf(key);\n    this.viewer.requestRender();\n  }\n\n  /** Hide the surfaces of these keys (they are kept, so showing them again is instant). */\n  setHidden(keys: Iterable<string>): void {\n    this.hidden = new Set(keys);\n    for (const [key, e] of this.layers) e.layer.visible = !this.hidden.has(key);\n    this.viewer.requestRender();\n  }\n\n  /** The front-most surface under screen point (`x`, `y`) (canvas CSS px), or null. */\n  pickAt(x: number, y: number): RegionMesh3D | null {\n    if (!this.layers.size) return null;\n    const ours = new Map([...this.layers.values()].map((e) => [e.layer, e.mesh]));\n    const hit = this.viewer.pickSurface(x, y, { pickable: (layer) => ours.has(layer) });\n    return hit ? (ours.get(hit.layer) ?? null) : null;\n  }\n\n  /** The meshes shown. */\n  get shown(): RegionMesh3D[] {\n    return [...this.layers.values()].map((e) => e.mesh);\n  }\n\n  clear(): void {\n    for (const [key, e] of [...this.layers]) this.remove(key, e.layer);\n    this.wanted = [];\n  }\n\n  private sync(): void {\n    const keep = new Map(this.wanted.map((m) => [m.key, m]));\n    for (const [key, e] of [...this.layers]) {\n      const want = keep.get(key);\n      if (!want || !want.faces.length) {\n        this.remove(key, e.layer);\n        continue;\n      }\n      // Rebuilt or recoloured: the same surface, updated in place.\n      if (want.vertices !== e.mesh.vertices && this.frame) {\n        e.layer.setData(toWorld(want.vertices, this.frame), want.faces);\n      }\n      if (want.color !== e.mesh.color) e.layer.color = want.color;\n      e.mesh = want;\n    }\n    if (this.frame) {\n      for (const mesh of this.wanted) if (!this.layers.has(mesh.key) && mesh.faces.length) this.add(mesh);\n    }\n    this.viewer.requestRender();\n  }\n\n  private add(mesh: RegionMesh3D): void {\n    const frame = this.frame as VolumeFrame;\n    const layer = this.viewer.addSurface(toWorld(mesh.vertices, frame), mesh.faces, undefined, {\n      name: `region ${mesh.key}`,\n      color: mesh.color,\n      opacity: this.opacityOf(mesh.key),\n      blending: 'translucent',\n      fit: 'never',\n    });\n    layer.visible = !this.hidden.has(mesh.key);\n    this.layers.set(mesh.key, { mesh, layer });\n  }\n\n  private opacityOf(key: string): number {\n    if (!this.highlighted.size) return REGION_MESH_OPACITY;\n    return this.highlighted.has(key) ? REGION_MESH_HIGHLIGHT_OPACITY : REGION_MESH_DIMMED_OPACITY;\n  }\n\n  private remove(key: string, layer: SurfaceLayer): void {\n    this.viewer.layers.remove(layer);\n    this.layers.delete(key);\n  }\n}\n\n/**\n * Image px / slice coordinates → the volume's centred world box: pixel x of a `w`-wide image\n * spans the box's width, slice k sits at the middle of its share of the box's depth.\n */\nexport function toWorld(vertices: Float32Array, frame: VolumeFrame): Float32Array {\n  const [w, h, d] = frame.size;\n  const [ww, wh, wd] = frame.world;\n  const out = new Float32Array(vertices.length);\n  for (let i = 0; i < vertices.length; i += 3) {\n    out[i] = (vertices[i] / w - 0.5) * ww;\n    out[i + 1] = (vertices[i + 1] / h - 0.5) * wh;\n    out[i + 2] = ((vertices[i + 2] + 0.5) / d - 0.5) * wd;\n  }\n  return out;\n}\n"]}
|