@jax-data-science/sci-image-visualizer 0.8.3 → 0.10.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (579) hide show
  1. package/README.md +201 -460
  2. package/esm2022/index.mjs +34 -15
  3. package/esm2022/lib/channel-histogram/channel-histogram.component.mjs +163 -91
  4. package/esm2022/lib/contracts/capabilities.contract.mjs +4 -3
  5. package/esm2022/lib/contracts/cell-segmenter.contract.mjs +1 -1
  6. package/esm2022/lib/contracts/channel-histogram-api.contract.mjs +5 -1
  7. package/esm2022/lib/contracts/color.mjs +60 -0
  8. package/esm2022/lib/contracts/colormap-lut.mjs +213 -57
  9. package/esm2022/lib/contracts/coordinate-transform.contract.mjs +1 -1
  10. package/esm2022/lib/contracts/display-types.mjs +11 -1
  11. package/esm2022/lib/contracts/image.contract.mjs +1 -1
  12. package/esm2022/lib/contracts/instance-segmenter.contract.mjs +1 -1
  13. package/esm2022/lib/contracts/intensity.mjs +48 -5
  14. package/esm2022/lib/contracts/plot-type-contribution.contract.mjs +1 -1
  15. package/esm2022/lib/contracts/plot-type.mjs +134 -17
  16. package/esm2022/lib/contracts/ports/image-state.port.mjs +4 -1
  17. package/esm2022/lib/contracts/ports/preferences.port.mjs +5 -1
  18. package/esm2022/lib/contracts/ports/region-io.port.mjs +2 -1
  19. package/esm2022/lib/contracts/ports/spatial-data.port.mjs +5 -1
  20. package/esm2022/lib/contracts/ports/tile-access.port.mjs +2 -1
  21. package/esm2022/lib/contracts/region-editor-api.contract.mjs +1 -1
  22. package/esm2022/lib/contracts/region-overlay.contract.mjs +1 -1
  23. package/esm2022/lib/contracts/region-store.contract.mjs +1 -1
  24. package/esm2022/lib/contracts/sam.contract.mjs +1 -1
  25. package/esm2022/lib/contracts/section-view.contract.mjs +2 -0
  26. package/esm2022/lib/contracts/semantic-segmenter.contract.mjs +1 -1
  27. package/esm2022/lib/contracts/spatial-dataset.contract.mjs +3 -1
  28. package/esm2022/lib/contracts/toolbar-tool.contract.mjs +6 -4
  29. package/esm2022/lib/contracts/visualizer.contract.mjs +1 -1
  30. package/esm2022/lib/contracts/viz-config.mjs +2 -1
  31. package/esm2022/lib/geometry/contour.mjs +63 -0
  32. package/esm2022/lib/geometry/loft.mjs +128 -0
  33. package/esm2022/lib/geometry/polylabel.mjs +156 -0
  34. package/esm2022/lib/geometry/raster.mjs +98 -0
  35. package/esm2022/lib/geometry/reconstruct.mjs +315 -0
  36. package/esm2022/lib/geometry/reslice-image.mjs +57 -0
  37. package/esm2022/lib/geometry/ring.mjs +201 -0
  38. package/esm2022/lib/geometry/section.mjs +215 -0
  39. package/esm2022/lib/hex-color-picker/hex-color-picker.component.mjs +202 -102
  40. package/esm2022/lib/implementations/base-store-visualizer.mjs +201 -48
  41. package/esm2022/lib/implementations/napari-js/napari-axes-gizmo.mjs +65 -0
  42. package/esm2022/lib/implementations/napari-js/napari-display-state.mjs +136 -0
  43. package/esm2022/lib/implementations/napari-js/napari-helpers.mjs +199 -0
  44. package/esm2022/lib/implementations/napari-js/napari-image-2d-scene.mjs +602 -0
  45. package/esm2022/lib/implementations/napari-js/napari-loading-badge.mjs +12 -9
  46. package/esm2022/lib/implementations/napari-js/napari-loading-state.mjs +83 -0
  47. package/esm2022/lib/implementations/napari-js/napari-region-mesh-pointer.mjs +100 -0
  48. package/esm2022/lib/implementations/napari-js/napari-region-overlay.mjs +180 -591
  49. package/esm2022/lib/implementations/napari-js/napari-scene.mjs +2 -0
  50. package/esm2022/lib/implementations/napari-js/napari-spatial-2d-scene.mjs +614 -0
  51. package/esm2022/lib/implementations/napari-js/napari-spatial-3d-scene.mjs +769 -0
  52. package/esm2022/lib/implementations/napari-js/napari-spatial-encoding.mjs +199 -0
  53. package/esm2022/lib/implementations/napari-js/napari-spatial-hover.mjs +270 -0
  54. package/esm2022/lib/implementations/napari-js/napari-spatial-scene.mjs +159 -0
  55. package/esm2022/lib/implementations/napari-js/napari-spatial-tiles.mjs +106 -1408
  56. package/esm2022/lib/implementations/napari-js/napari-spatial-tooltip.mjs +2 -2
  57. package/esm2022/lib/implementations/napari-js/napari-surface-scene.mjs +271 -0
  58. package/esm2022/lib/implementations/napari-js/napari-tile-client.mjs +562 -0
  59. package/esm2022/lib/implementations/napari-js/napari-tool-bridge.mjs +347 -0
  60. package/esm2022/lib/implementations/napari-js/napari-visualizer.service.mjs +427 -4207
  61. package/esm2022/lib/implementations/napari-js/napari-volume-region-meshes.mjs +129 -0
  62. package/esm2022/lib/implementations/napari-js/napari-volume-scene.mjs +550 -0
  63. package/esm2022/lib/implementations/napari-js/napari-volume-slice-planes.mjs +103 -0
  64. package/esm2022/lib/implementations/napari-js/napari-volume-z-handle.mjs +6 -6
  65. package/esm2022/lib/implementations/napari-js/region-overlay/overlay-projection.mjs +96 -0
  66. package/esm2022/lib/implementations/napari-js/region-overlay/region-edit.mjs +35 -0
  67. package/esm2022/lib/implementations/napari-js/region-overlay/region-svg-renderer.mjs +194 -0
  68. package/esm2022/lib/implementations/napari-js/spatial-tiles/categorical-lookup.mjs +30 -0
  69. package/esm2022/lib/implementations/napari-js/spatial-tiles/cell-layers.mjs +274 -0
  70. package/esm2022/lib/implementations/napari-js/spatial-tiles/density-layer.mjs +144 -0
  71. package/esm2022/lib/implementations/napari-js/spatial-tiles/layer-groups.mjs +165 -0
  72. package/esm2022/lib/implementations/napari-js/spatial-tiles/plan-context.mjs +78 -0
  73. package/esm2022/lib/implementations/napari-js/spatial-tiles/transcript-hover.mjs +182 -0
  74. package/esm2022/lib/implementations/napari-js/spatial-tiles/transcript-jobs.mjs +369 -0
  75. package/esm2022/lib/implementations/napari-js/spatial-tiles/transcript-layers.mjs +306 -0
  76. package/esm2022/lib/implementations/osd/display-pipeline.mjs +102 -40
  77. package/esm2022/lib/implementations/osd/histogram-sampler.mjs +56 -31
  78. package/esm2022/lib/implementations/osd/openseadragon-viewer-options.mjs +128 -0
  79. package/esm2022/lib/implementations/osd/openseadragon-visualizer.service.mjs +333 -1685
  80. package/esm2022/lib/implementations/osd/osd-coordinate-transform.mjs +1 -1
  81. package/esm2022/lib/implementations/osd/osd-coords.mjs +5 -6
  82. package/esm2022/lib/implementations/osd/osd-export.mjs +122 -0
  83. package/esm2022/lib/implementations/osd/osd-lib.mjs +15 -1
  84. package/esm2022/lib/implementations/osd/osd-navigator-chrome.mjs +205 -0
  85. package/esm2022/lib/implementations/osd/osd-pixel-readback.mjs +68 -0
  86. package/esm2022/lib/implementations/osd/osd-region-overlay-draw.mjs +164 -0
  87. package/esm2022/lib/implementations/osd/osd-region-overlay.mjs +213 -716
  88. package/esm2022/lib/implementations/osd/osd-scale-bar.mjs +52 -60
  89. package/esm2022/lib/implementations/osd/osd-tile-source.mjs +105 -0
  90. package/esm2022/lib/implementations/osd/osd-viewer-like.mjs +2 -0
  91. package/esm2022/lib/implementations/osd/osd-viewer-mount.mjs +44 -0
  92. package/esm2022/lib/implementations/osd/osd-viewport.mjs +184 -0
  93. package/esm2022/lib/implementations/osd/osd-zoom.mjs +7 -1
  94. package/esm2022/lib/implementations/osd/simple-source.mjs +395 -0
  95. package/esm2022/lib/implementations/osd/slice-cache.mjs +53 -48
  96. package/esm2022/lib/implementations/osd/tile-client.mjs +32 -11
  97. package/esm2022/lib/implementations/osd/tile-recolor.mjs +330 -0
  98. package/esm2022/lib/implementations/plotly/omics-trace-builders.mjs +161 -73
  99. package/esm2022/lib/implementations/plotly/plotly-coordinate-transform.mjs +1 -1
  100. package/esm2022/lib/implementations/plotly/plotly-image-loader.mjs +112 -0
  101. package/esm2022/lib/implementations/plotly/plotly-image-recolor.mjs +178 -0
  102. package/esm2022/lib/implementations/plotly/plotly-intensity-inset.mjs +33 -0
  103. package/esm2022/lib/implementations/plotly/plotly-isosurface-controls.mjs +83 -0
  104. package/esm2022/lib/implementations/plotly/plotly-layouts.mjs +121 -0
  105. package/esm2022/lib/implementations/plotly/plotly-readback.mjs +117 -0
  106. package/esm2022/lib/implementations/plotly/plotly-region-overlay.mjs +19 -10
  107. package/esm2022/lib/implementations/plotly/plotly-shape-projection.mjs +223 -0
  108. package/esm2022/lib/implementations/plotly/plotly-trace-builders.mjs +79 -19
  109. package/esm2022/lib/implementations/plotly/plotly-zoom-controller.mjs +223 -0
  110. package/esm2022/lib/implementations/plotly/plotly.service.mjs +439 -1655
  111. package/esm2022/lib/implementations/region-centroids.mjs +47 -0
  112. package/esm2022/lib/implementations/simple-slice-access.service.mjs +22 -12
  113. package/esm2022/lib/implementations/spatial-data-http/spatial-data-http.service.mjs +172 -92
  114. package/esm2022/lib/implementations/spatial-data-http/spatial-wire.mjs +103 -22
  115. package/esm2022/lib/implementations/tile-server/index.mjs +6 -0
  116. package/esm2022/lib/implementations/tile-server/native-histogram.mjs +30 -0
  117. package/esm2022/lib/implementations/tile-server/poll-descriptor.mjs +65 -0
  118. package/esm2022/lib/implementations/tile-server/tile-protocol.mjs +42 -0
  119. package/esm2022/lib/implementations/tile-server/transport.mjs +135 -0
  120. package/esm2022/lib/intensity/intensity-profile.mjs +107 -0
  121. package/esm2022/lib/intensity/intensity-profile.service.mjs +223 -0
  122. package/esm2022/lib/intensity-inset/intensity-inset.component.mjs +133 -0
  123. package/esm2022/lib/models/bezier.mjs +1 -11
  124. package/esm2022/lib/models/class-preset.mjs +41 -3
  125. package/esm2022/lib/models/geometry.mjs +27 -164
  126. package/esm2022/lib/models/polygon-edit.mjs +254 -0
  127. package/esm2022/lib/models/polygon-factory.mjs +134 -0
  128. package/esm2022/lib/models/region-clone.mjs +68 -0
  129. package/esm2022/lib/models/region-geojson.mjs +411 -0
  130. package/esm2022/lib/models/region.mjs +34 -33
  131. package/esm2022/lib/models/shape.mjs +18 -16
  132. package/esm2022/lib/plot-mode/contribution-host.mjs +297 -0
  133. package/esm2022/lib/plot-mode/plot-mode-controller.mjs +9 -6
  134. package/esm2022/lib/plot-mode/plot-type-menu.mjs +85 -0
  135. package/esm2022/lib/plot-mode/tool-params-model.mjs +87 -0
  136. package/esm2022/lib/plot.utilities.mjs +296 -473
  137. package/esm2022/lib/processing/image-crop.mjs +1 -1
  138. package/esm2022/lib/processing/processing-image.mjs +28 -15
  139. package/esm2022/lib/provide-visualization.mjs +40 -14
  140. package/esm2022/lib/region-editor/class-tree/class-tree.component.mjs +156 -0
  141. package/esm2022/lib/region-editor/class-tree/class-tree.mjs +108 -0
  142. package/esm2022/lib/region-editor/classes-panel/classes-panel.component.mjs +163 -0
  143. package/esm2022/lib/region-editor/file-stem.mjs +13 -0
  144. package/esm2022/lib/region-editor/manage-classes-dialog/manage-classes-dialog.component.mjs +118 -0
  145. package/esm2022/lib/region-editor/mask-export.service.mjs +98 -0
  146. package/esm2022/lib/region-editor/mask-raster.mjs +11 -5
  147. package/esm2022/lib/region-editor/region-color-dialog/region-color-dialog.component.mjs +56 -0
  148. package/esm2022/lib/region-editor/region-editor-help/region-editor-help.component.mjs +28 -0
  149. package/esm2022/lib/region-editor/region-editor.component.mjs +896 -660
  150. package/esm2022/lib/region-editor/region-metrics.mjs +86 -0
  151. package/esm2022/lib/region-editor/region-persistence.service.mjs +160 -0
  152. package/esm2022/lib/region-editor/region-table/region-table.component.mjs +169 -0
  153. package/esm2022/lib/region-editor/save-mask-dialog/save-mask-dialog.component.mjs +91 -0
  154. package/esm2022/lib/region-editor/save-regions-dialog/save-regions-dialog.component.mjs +92 -0
  155. package/esm2022/lib/region-ops.service.mjs +28 -70
  156. package/esm2022/lib/region-overlay/region-geometry.mjs +360 -0
  157. package/esm2022/lib/region-overlay/region-hit-test.mjs +103 -0
  158. package/esm2022/lib/region-overlay/region-source-layer.mjs +378 -0
  159. package/esm2022/lib/region-overlay/region-style.mjs +97 -0
  160. package/esm2022/lib/region-overlay/svg-region-renderer.mjs +228 -0
  161. package/esm2022/lib/region-source/http-region-source.mjs +104 -0
  162. package/esm2022/lib/region-source/region-source-ops.mjs +53 -0
  163. package/esm2022/lib/region-source/region-source-worker.mjs +10 -0
  164. package/esm2022/lib/region-source/region-source.mjs +67 -0
  165. package/esm2022/lib/region-source/region-tiles.mjs +708 -0
  166. package/esm2022/lib/region-source/worker-region-source.mjs +229 -0
  167. package/esm2022/lib/render-orchestrator.mjs +14 -11
  168. package/esm2022/lib/render-session.mjs +207 -0
  169. package/esm2022/lib/routing-visualizer.service.mjs +858 -414
  170. package/esm2022/lib/section-pane/section-pane.component.mjs +299 -0
  171. package/esm2022/lib/spatial/density-raster.mjs +14 -0
  172. package/esm2022/lib/spatial/embedding-compute-coordinator.mjs +239 -0
  173. package/esm2022/lib/spatial/embedding-compute.mjs +43 -10
  174. package/esm2022/lib/spatial/gene-search.mjs +1 -1
  175. package/esm2022/lib/spatial/glyphs.mjs +97 -0
  176. package/esm2022/lib/spatial/lod.mjs +187 -0
  177. package/esm2022/lib/spatial/spatial-controls.facade.mjs +200 -0
  178. package/esm2022/lib/spatial/spatial-density.mjs +25 -16
  179. package/esm2022/lib/spatial/spatial-encoding.mjs +26 -82
  180. package/esm2022/lib/spatial/spatial-expression.mjs +43 -42
  181. package/esm2022/lib/spatial/spatial-framing.mjs +1 -1
  182. package/esm2022/lib/spatial/spatial-heatmap.mjs +6 -3
  183. package/esm2022/lib/spatial/spatial-hover.mjs +5 -33
  184. package/esm2022/lib/spatial/spatial-panel-model.mjs +282 -0
  185. package/esm2022/lib/spatial/spatial-sections.mjs +1 -1
  186. package/esm2022/lib/spatial/spatial-selection.mjs +33 -46
  187. package/esm2022/lib/spatial/spatial-tile-merge.mjs +219 -0
  188. package/esm2022/lib/spatial/spatial-tiles.mjs +12 -648
  189. package/esm2022/lib/spatial/spatial-volume-image.mjs +2 -4
  190. package/esm2022/lib/spatial/stats.mjs +71 -0
  191. package/esm2022/lib/spatial/transcript-grouping.mjs +307 -0
  192. package/esm2022/lib/spatial-controls/spatial-cells-panel/spatial-cells-panel.component.mjs +150 -0
  193. package/esm2022/lib/spatial-controls/spatial-charts/chart-data-model.mjs +309 -0
  194. package/esm2022/lib/spatial-controls/spatial-charts/chart-help.mjs +145 -0
  195. package/esm2022/lib/spatial-controls/spatial-charts/plotly-chart-host.mjs +158 -0
  196. package/esm2022/lib/spatial-controls/spatial-charts/spatial-chart-window/spatial-chart-window.component.mjs +47 -0
  197. package/esm2022/lib/spatial-controls/spatial-charts/spatial-charts.component.mjs +297 -802
  198. package/esm2022/lib/spatial-controls/spatial-charts/spatial-embedding-controls/spatial-embedding-controls.component.mjs +89 -0
  199. package/esm2022/lib/spatial-controls/spatial-charts/spatial-heatmap-controls/spatial-heatmap-controls.component.mjs +52 -0
  200. package/esm2022/lib/spatial-controls/spatial-controls.component.mjs +143 -1238
  201. package/esm2022/lib/spatial-controls/spatial-gene-picker.mjs +153 -0
  202. package/esm2022/lib/spatial-controls/spatial-gene-tree/spatial-gene-tree.component.mjs +241 -0
  203. package/esm2022/lib/spatial-controls/spatial-groups-panel/spatial-groups-panel.component.mjs +193 -0
  204. package/esm2022/lib/spatial-controls/spatial-key/spatial-key.component.mjs +132 -0
  205. package/esm2022/lib/spatial-controls/spatial-key/spatial-key.model.mjs +67 -0
  206. package/esm2022/lib/spatial-controls/spatial-marker-genes-form/spatial-marker-genes-form.component.mjs +147 -0
  207. package/esm2022/lib/spatial-controls/spatial-observations-panel/spatial-observations-panel.component.mjs +300 -0
  208. package/esm2022/lib/spatial-controls/spatial-transcripts-panel/spatial-transcripts-panel.component.mjs +370 -0
  209. package/esm2022/lib/store/class-color.util.mjs +53 -5
  210. package/esm2022/lib/store/class-signatures.mjs +63 -0
  211. package/esm2022/lib/store/region-history.mjs +146 -0
  212. package/esm2022/lib/store/region-scope-cache.mjs +144 -0
  213. package/esm2022/lib/store/region-selection.mjs +82 -0
  214. package/esm2022/lib/store/region-source-scope.mjs +171 -0
  215. package/esm2022/lib/store/region-store.service.mjs +986 -670
  216. package/esm2022/lib/store/spatial-selection.service.mjs +2 -2
  217. package/esm2022/lib/store/visualizer-store.service.mjs +81 -76
  218. package/esm2022/lib/toast-outlets.mjs +5 -4
  219. package/esm2022/lib/toolbar/brush/brush-tool.service.mjs +92 -434
  220. package/esm2022/lib/toolbar/canvas-tools.mjs +20 -0
  221. package/esm2022/lib/toolbar/crop/slide-crop.mjs +26 -42
  222. package/esm2022/lib/toolbar/plot-type-selector/plot-type-selector.component.mjs +85 -0
  223. package/esm2022/lib/toolbar/region-tools/region-tool-buttons.mjs +74 -0
  224. package/esm2022/lib/toolbar/region-tools/region-tools.component.mjs +120 -0
  225. package/esm2022/lib/toolbar/segmentation/cell-segment-tool.service.mjs +74 -78
  226. package/esm2022/lib/toolbar/segmentation/cellpose-segmenter.service.mjs +50 -8
  227. package/esm2022/lib/toolbar/segmentation/onnx-sam-session.mjs +61 -42
  228. package/esm2022/lib/toolbar/segmentation/pending-calls.mjs +47 -0
  229. package/esm2022/lib/toolbar/segmentation/sam-model-registry.mjs +12 -4
  230. package/esm2022/lib/toolbar/segmentation/sam-onnx-core.mjs +70 -14
  231. package/esm2022/lib/toolbar/segmentation/sam-point-tool.service.mjs +135 -172
  232. package/esm2022/lib/toolbar/segmentation/sam-prompt.mjs +9 -90
  233. package/esm2022/lib/toolbar/segmentation/sam-session.service.mjs +183 -0
  234. package/esm2022/lib/toolbar/segmentation/sam-tool.service.mjs +95 -150
  235. package/esm2022/lib/toolbar/segmentation/segmentation-commit.mjs +12 -0
  236. package/esm2022/lib/toolbar/segmentation/segmentation-runner.mjs +108 -0
  237. package/esm2022/lib/toolbar/segmentation-tools/segmentation-tools.component.mjs +155 -0
  238. package/esm2022/lib/toolbar/stack-controls/stack-controls.component.mjs +121 -0
  239. package/esm2022/lib/toolbar/tool-kit/async-tool-status.mjs +37 -0
  240. package/esm2022/lib/toolbar/tool-kit/canvas-tool-manager.mjs +63 -0
  241. package/esm2022/lib/toolbar/tool-kit/canvas-tool.mjs +2 -0
  242. package/esm2022/lib/toolbar/tool-kit/frame-pixels.mjs +108 -0
  243. package/esm2022/lib/toolbar/tool-kit/mask-stroke-editor.mjs +306 -0
  244. package/esm2022/lib/toolbar/tool-kit/matrix-frame.mjs +61 -0
  245. package/esm2022/lib/toolbar/tool-kit/tool-overlay.mjs +140 -0
  246. package/esm2022/lib/toolbar/tool-kit/undo-gesture.mjs +24 -0
  247. package/esm2022/lib/toolbar/tool-slider/tool-slider.component.mjs +63 -0
  248. package/esm2022/lib/toolbar/toolbar-help-dialog/toolbar-help-dialog.component.mjs +50 -0
  249. package/esm2022/lib/toolbar/toolbar.component.mjs +84 -119
  250. package/esm2022/lib/toolbar/vertex-eraser/vertex-eraser-tool.service.mjs +93 -115
  251. package/esm2022/lib/toolbar/view-controls/view-controls.component.mjs +107 -0
  252. package/esm2022/lib/toolbar/wand/wand-region-grow.mjs +321 -0
  253. package/esm2022/lib/toolbar/wand/wand-tool.service.mjs +121 -416
  254. package/esm2022/lib/toolbar/wand/wand.service.mjs +30 -894
  255. package/esm2022/lib/toolbar/zoom-to-box/zoom-to-box-tool.service.mjs +48 -90
  256. package/esm2022/lib/util/mark-for-check.mjs +17 -0
  257. package/esm2022/lib/util/supersede.mjs +56 -0
  258. package/esm2022/lib/visualization.module.mjs +39 -141
  259. package/esm2022/lib/visualizer/floating-drag.directive.mjs +58 -0
  260. package/esm2022/lib/visualizer/region-actions.mjs +149 -0
  261. package/esm2022/lib/visualizer/region-load.mjs +123 -0
  262. package/esm2022/lib/visualizer/spatial-dataset-binder.mjs +163 -0
  263. package/esm2022/lib/visualizer/tool-modes.mjs +113 -0
  264. package/esm2022/lib/visualizer/viewer-shortcuts.mjs +167 -0
  265. package/esm2022/lib/visualizer/visualizer-context-menu.mjs +119 -0
  266. package/esm2022/lib/visualizer/volume-sections.mjs +175 -0
  267. package/esm2022/lib/visualizer.component.mjs +602 -1902
  268. package/esm2022/lib/workers/spatial-math-ops.mjs +43 -0
  269. package/esm2022/lib/workers/spatial-math-worker.mjs +10 -0
  270. package/esm2022/lib/workers/spatial-math.mjs +190 -0
  271. package/fesm2022/jax-data-science-sci-image-visualizer-jax-data-science-sci-image-visualizer-BKQhpbHv.mjs +47169 -0
  272. package/fesm2022/jax-data-science-sci-image-visualizer-jax-data-science-sci-image-visualizer-BKQhpbHv.mjs.map +1 -0
  273. package/fesm2022/jax-data-science-sci-image-visualizer-onnx-sam-session-z1IN-F7w.mjs +238 -0
  274. package/fesm2022/jax-data-science-sci-image-visualizer-onnx-sam-session-z1IN-F7w.mjs.map +1 -0
  275. package/fesm2022/jax-data-science-sci-image-visualizer-region-source-worker-CAqBjM5L.mjs +12 -0
  276. package/fesm2022/jax-data-science-sci-image-visualizer-region-source-worker-CAqBjM5L.mjs.map +1 -0
  277. package/fesm2022/jax-data-science-sci-image-visualizer-spatial-math-worker-BzVFFqGS.mjs +12 -0
  278. package/fesm2022/jax-data-science-sci-image-visualizer-spatial-math-worker-BzVFFqGS.mjs.map +1 -0
  279. package/fesm2022/jax-data-science-sci-image-visualizer.mjs +41 -34467
  280. package/fesm2022/jax-data-science-sci-image-visualizer.mjs.map +1 -1
  281. package/fesm2022/mask.worker.js +36 -917
  282. package/fesm2022/onnx-sam.worker.js +52 -16
  283. package/fesm2022/region-source.worker.js +1067 -0
  284. package/fesm2022/spatial-math.worker.js +471 -0
  285. package/fesm2022/tsne.worker.js +32 -15
  286. package/index.d.ts +19 -10
  287. package/lib/channel-histogram/channel-histogram.component.d.ts +53 -43
  288. package/lib/contracts/capabilities.contract.d.ts +4 -2
  289. package/lib/contracts/cell-segmenter.contract.d.ts +1 -0
  290. package/lib/contracts/channel-histogram-api.contract.d.ts +4 -0
  291. package/lib/contracts/color.d.ts +27 -0
  292. package/lib/contracts/colormap-lut.d.ts +19 -4
  293. package/lib/contracts/coordinate-transform.contract.d.ts +3 -3
  294. package/lib/contracts/display-types.d.ts +21 -0
  295. package/lib/contracts/image.contract.d.ts +4 -0
  296. package/lib/contracts/instance-segmenter.contract.d.ts +5 -0
  297. package/lib/contracts/intensity.d.ts +13 -2
  298. package/lib/contracts/plot-type.d.ts +3 -1
  299. package/lib/contracts/ports/image-state.port.d.ts +6 -2
  300. package/lib/contracts/ports/preferences.port.d.ts +4 -0
  301. package/lib/contracts/ports/region-io.port.d.ts +1 -0
  302. package/lib/contracts/ports/spatial-data.port.d.ts +4 -10
  303. package/lib/contracts/ports/tile-access.port.d.ts +1 -0
  304. package/lib/contracts/region-editor-api.contract.d.ts +85 -1
  305. package/lib/contracts/region-overlay.contract.d.ts +5 -0
  306. package/lib/contracts/region-store.contract.d.ts +22 -0
  307. package/lib/contracts/sam.contract.d.ts +7 -0
  308. package/lib/contracts/section-view.contract.d.ts +44 -0
  309. package/lib/contracts/semantic-segmenter.contract.d.ts +6 -0
  310. package/lib/contracts/spatial-dataset.contract.d.ts +19 -6
  311. package/lib/contracts/toolbar-tool.contract.d.ts +1 -0
  312. package/lib/contracts/visualizer.contract.d.ts +231 -54
  313. package/lib/contracts/viz-config.d.ts +9 -0
  314. package/lib/geometry/contour.d.ts +24 -0
  315. package/lib/geometry/loft.d.ts +22 -0
  316. package/lib/geometry/polylabel.d.ts +23 -0
  317. package/lib/geometry/raster.d.ts +42 -0
  318. package/lib/geometry/reconstruct.d.ts +54 -0
  319. package/lib/geometry/reslice-image.d.ts +33 -0
  320. package/lib/geometry/ring.d.ts +67 -0
  321. package/lib/geometry/section.d.ts +52 -0
  322. package/lib/hex-color-picker/hex-color-picker.component.d.ts +61 -27
  323. package/lib/implementations/base-store-visualizer.d.ts +61 -15
  324. package/lib/implementations/napari-js/napari-axes-gizmo.d.ts +36 -0
  325. package/lib/implementations/napari-js/napari-display-state.d.ts +76 -0
  326. package/lib/implementations/napari-js/napari-helpers.d.ts +129 -0
  327. package/lib/implementations/napari-js/napari-image-2d-scene.d.ts +162 -0
  328. package/lib/implementations/napari-js/napari-loading-badge.d.ts +4 -3
  329. package/lib/implementations/napari-js/napari-loading-state.d.ts +37 -0
  330. package/lib/implementations/napari-js/napari-region-mesh-pointer.d.ts +32 -0
  331. package/lib/implementations/napari-js/napari-region-overlay.d.ts +68 -71
  332. package/lib/implementations/napari-js/napari-scene.d.ts +126 -0
  333. package/lib/implementations/napari-js/napari-spatial-2d-scene.d.ts +163 -0
  334. package/lib/implementations/napari-js/napari-spatial-3d-scene.d.ts +212 -0
  335. package/lib/implementations/napari-js/napari-spatial-encoding.d.ts +114 -0
  336. package/lib/implementations/napari-js/napari-spatial-hover.d.ts +91 -0
  337. package/lib/implementations/napari-js/napari-spatial-scene.d.ts +118 -0
  338. package/lib/implementations/napari-js/napari-spatial-tiles.d.ts +56 -263
  339. package/lib/implementations/napari-js/napari-spatial-tooltip.d.ts +1 -1
  340. package/lib/implementations/napari-js/napari-surface-scene.d.ts +76 -0
  341. package/lib/implementations/napari-js/napari-tile-client.d.ts +214 -0
  342. package/lib/implementations/napari-js/napari-tool-bridge.d.ts +179 -0
  343. package/lib/implementations/napari-js/napari-visualizer.service.d.ts +169 -883
  344. package/lib/implementations/napari-js/napari-volume-region-meshes.d.ts +66 -0
  345. package/lib/implementations/napari-js/napari-volume-scene.d.ts +148 -0
  346. package/lib/implementations/napari-js/napari-volume-slice-planes.d.ts +43 -0
  347. package/lib/implementations/napari-js/napari-volume-z-handle.d.ts +8 -12
  348. package/lib/implementations/napari-js/region-overlay/overlay-projection.d.ts +59 -0
  349. package/lib/implementations/napari-js/region-overlay/region-edit.d.ts +15 -0
  350. package/lib/implementations/napari-js/region-overlay/region-svg-renderer.d.ts +54 -0
  351. package/lib/implementations/napari-js/spatial-tiles/categorical-lookup.d.ts +26 -0
  352. package/lib/implementations/napari-js/spatial-tiles/cell-layers.d.ts +70 -0
  353. package/lib/implementations/napari-js/spatial-tiles/density-layer.d.ts +61 -0
  354. package/lib/implementations/napari-js/spatial-tiles/layer-groups.d.ts +67 -0
  355. package/lib/implementations/napari-js/spatial-tiles/plan-context.d.ts +38 -0
  356. package/lib/implementations/napari-js/spatial-tiles/transcript-hover.d.ts +71 -0
  357. package/lib/implementations/napari-js/spatial-tiles/transcript-jobs.d.ts +105 -0
  358. package/lib/implementations/napari-js/spatial-tiles/transcript-layers.d.ts +56 -0
  359. package/lib/implementations/osd/display-pipeline.d.ts +38 -9
  360. package/lib/implementations/osd/histogram-sampler.d.ts +22 -12
  361. package/lib/implementations/osd/openseadragon-viewer-options.d.ts +35 -0
  362. package/lib/implementations/osd/openseadragon-visualizer.service.d.ts +78 -354
  363. package/lib/implementations/osd/osd-coordinate-transform.d.ts +2 -1
  364. package/lib/implementations/osd/osd-coords.d.ts +6 -4
  365. package/lib/implementations/osd/osd-export.d.ts +36 -0
  366. package/lib/implementations/osd/osd-lib.d.ts +7 -0
  367. package/lib/implementations/osd/osd-navigator-chrome.d.ts +69 -0
  368. package/lib/implementations/osd/osd-pixel-readback.d.ts +22 -0
  369. package/lib/implementations/osd/osd-region-overlay-draw.d.ts +38 -0
  370. package/lib/implementations/osd/osd-region-overlay.d.ts +46 -51
  371. package/lib/implementations/osd/osd-scale-bar.d.ts +8 -6
  372. package/lib/implementations/osd/osd-tile-source.d.ts +49 -0
  373. package/lib/implementations/osd/osd-viewer-like.d.ts +100 -0
  374. package/lib/implementations/osd/osd-viewer-mount.d.ts +14 -0
  375. package/lib/implementations/osd/osd-viewport.d.ts +77 -0
  376. package/lib/implementations/osd/osd-zoom.d.ts +6 -0
  377. package/lib/implementations/osd/simple-source.d.ts +161 -0
  378. package/lib/implementations/osd/slice-cache.d.ts +12 -3
  379. package/lib/implementations/osd/tile-client.d.ts +11 -14
  380. package/lib/implementations/osd/tile-recolor.d.ts +141 -0
  381. package/lib/implementations/plotly/omics-trace-builders.d.ts +32 -20
  382. package/lib/implementations/plotly/plotly-image-loader.d.ts +49 -0
  383. package/lib/implementations/plotly/plotly-image-recolor.d.ts +75 -0
  384. package/lib/implementations/plotly/plotly-intensity-inset.d.ts +8 -0
  385. package/lib/implementations/plotly/plotly-isosurface-controls.d.ts +38 -0
  386. package/lib/implementations/plotly/plotly-layouts.d.ts +188 -0
  387. package/lib/implementations/plotly/plotly-readback.d.ts +41 -0
  388. package/lib/implementations/plotly/plotly-region-overlay.d.ts +2 -2
  389. package/lib/implementations/plotly/plotly-shape-projection.d.ts +92 -0
  390. package/lib/implementations/plotly/plotly-trace-builders.d.ts +23 -12
  391. package/lib/implementations/plotly/plotly-zoom-controller.d.ts +86 -0
  392. package/lib/implementations/plotly/plotly.service.d.ts +136 -401
  393. package/lib/implementations/region-centroids.d.ts +14 -0
  394. package/lib/implementations/simple-slice-access.service.d.ts +7 -4
  395. package/lib/implementations/spatial-data-http/spatial-data-http.service.d.ts +42 -18
  396. package/lib/implementations/spatial-data-http/spatial-wire.d.ts +34 -9
  397. package/lib/implementations/tile-server/index.d.ts +5 -0
  398. package/lib/implementations/tile-server/native-histogram.d.ts +25 -0
  399. package/lib/implementations/tile-server/poll-descriptor.d.ts +39 -0
  400. package/lib/implementations/tile-server/tile-protocol.d.ts +83 -0
  401. package/lib/implementations/tile-server/transport.d.ts +62 -0
  402. package/lib/intensity/intensity-profile.d.ts +66 -0
  403. package/lib/intensity/intensity-profile.service.d.ts +108 -0
  404. package/lib/intensity-inset/intensity-inset.component.d.ts +58 -0
  405. package/lib/models/bezier.d.ts +0 -5
  406. package/lib/models/class-preset.d.ts +25 -0
  407. package/lib/models/geometry.d.ts +14 -48
  408. package/lib/models/polygon-edit.d.ts +72 -0
  409. package/lib/models/polygon-factory.d.ts +45 -0
  410. package/lib/models/region-clone.d.ts +20 -0
  411. package/lib/models/region-geojson.d.ts +57 -0
  412. package/lib/models/region.d.ts +59 -4
  413. package/lib/models/shape.d.ts +8 -0
  414. package/lib/plot-mode/contribution-host.d.ts +125 -0
  415. package/lib/plot-mode/plot-type-menu.d.ts +60 -0
  416. package/lib/plot-mode/tool-params-model.d.ts +49 -0
  417. package/lib/plot.utilities.d.ts +19 -30
  418. package/lib/processing/processing-image.d.ts +5 -2
  419. package/lib/provide-visualization.d.ts +19 -2
  420. package/lib/region-editor/class-tree/class-tree.component.d.ts +78 -0
  421. package/lib/region-editor/class-tree/class-tree.d.ts +31 -0
  422. package/lib/region-editor/classes-panel/classes-panel.component.d.ts +86 -0
  423. package/lib/region-editor/file-stem.d.ts +7 -0
  424. package/lib/region-editor/manage-classes-dialog/manage-classes-dialog.component.d.ts +45 -0
  425. package/lib/region-editor/mask-export.service.d.ts +54 -0
  426. package/lib/region-editor/mask-raster.d.ts +2 -8
  427. package/lib/region-editor/region-color-dialog/region-color-dialog.component.d.ts +29 -0
  428. package/lib/region-editor/region-editor-help/region-editor-help.component.d.ts +11 -0
  429. package/lib/region-editor/region-editor.component.d.ts +283 -200
  430. package/lib/region-editor/region-metrics.d.ts +34 -0
  431. package/lib/region-editor/region-persistence.service.d.ts +77 -0
  432. package/lib/region-editor/region-table/region-table.component.d.ts +89 -0
  433. package/lib/region-editor/save-mask-dialog/save-mask-dialog.component.d.ts +36 -0
  434. package/lib/region-editor/save-regions-dialog/save-regions-dialog.component.d.ts +37 -0
  435. package/lib/region-ops.service.d.ts +1 -7
  436. package/lib/region-overlay/region-geometry.d.ts +158 -0
  437. package/lib/region-overlay/region-hit-test.d.ts +38 -0
  438. package/lib/region-overlay/region-source-layer.d.ts +96 -0
  439. package/lib/region-overlay/region-style.d.ts +52 -0
  440. package/lib/region-overlay/svg-region-renderer.d.ts +110 -0
  441. package/lib/region-source/http-region-source.d.ts +45 -0
  442. package/lib/region-source/region-source-ops.d.ts +89 -0
  443. package/lib/region-source/region-source-worker.d.ts +7 -0
  444. package/lib/region-source/region-source.d.ts +82 -0
  445. package/lib/region-source/region-tiles.d.ts +289 -0
  446. package/lib/region-source/worker-region-source.d.ts +65 -0
  447. package/lib/render-orchestrator.d.ts +6 -2
  448. package/lib/render-session.d.ts +75 -0
  449. package/lib/routing-visualizer.service.d.ts +248 -59
  450. package/lib/section-pane/section-pane.component.d.ts +47 -0
  451. package/lib/spatial/density-raster.d.ts +6 -0
  452. package/lib/spatial/embedding-compute-coordinator.d.ts +123 -0
  453. package/lib/spatial/embedding-compute.d.ts +21 -2
  454. package/lib/spatial/glyphs.d.ts +16 -0
  455. package/lib/spatial/lod.d.ts +94 -0
  456. package/lib/spatial/spatial-controls.facade.d.ts +64 -0
  457. package/lib/spatial/spatial-density.d.ts +15 -5
  458. package/lib/spatial/spatial-encoding.d.ts +11 -44
  459. package/lib/spatial/spatial-expression.d.ts +40 -22
  460. package/lib/spatial/spatial-framing.d.ts +1 -0
  461. package/lib/spatial/spatial-heatmap.d.ts +2 -0
  462. package/lib/spatial/spatial-hover.d.ts +4 -16
  463. package/lib/spatial/spatial-panel-model.d.ts +135 -0
  464. package/lib/spatial/spatial-selection.d.ts +21 -26
  465. package/lib/spatial/spatial-tile-merge.d.ts +41 -0
  466. package/lib/spatial/spatial-tiles.d.ts +9 -256
  467. package/lib/spatial/stats.d.ts +38 -0
  468. package/lib/spatial/transcript-grouping.d.ts +119 -0
  469. package/lib/spatial-controls/spatial-cells-panel/spatial-cells-panel.component.d.ts +64 -0
  470. package/lib/spatial-controls/spatial-charts/chart-data-model.d.ts +153 -0
  471. package/lib/spatial-controls/spatial-charts/chart-help.d.ts +69 -0
  472. package/lib/spatial-controls/spatial-charts/plotly-chart-host.d.ts +98 -0
  473. package/lib/spatial-controls/spatial-charts/spatial-chart-window/spatial-chart-window.component.d.ts +26 -0
  474. package/lib/spatial-controls/spatial-charts/spatial-charts.component.d.ts +101 -260
  475. package/lib/spatial-controls/spatial-charts/spatial-embedding-controls/spatial-embedding-controls.component.d.ts +43 -0
  476. package/lib/spatial-controls/spatial-charts/spatial-heatmap-controls/spatial-heatmap-controls.component.d.ts +27 -0
  477. package/lib/spatial-controls/spatial-controls.component.d.ts +68 -448
  478. package/lib/spatial-controls/spatial-gene-picker.d.ts +86 -0
  479. package/lib/spatial-controls/spatial-gene-tree/spatial-gene-tree.component.d.ts +102 -0
  480. package/lib/spatial-controls/spatial-groups-panel/spatial-groups-panel.component.d.ts +72 -0
  481. package/lib/spatial-controls/spatial-key/spatial-key.component.d.ts +66 -0
  482. package/lib/spatial-controls/spatial-key/spatial-key.model.d.ts +33 -0
  483. package/lib/spatial-controls/spatial-marker-genes-form/spatial-marker-genes-form.component.d.ts +64 -0
  484. package/lib/spatial-controls/spatial-observations-panel/spatial-observations-panel.component.d.ts +117 -0
  485. package/lib/spatial-controls/spatial-transcripts-panel/spatial-transcripts-panel.component.d.ts +142 -0
  486. package/lib/store/class-color.util.d.ts +39 -2
  487. package/lib/store/class-signatures.d.ts +11 -0
  488. package/lib/store/region-history.d.ts +66 -0
  489. package/lib/store/region-scope-cache.d.ts +65 -0
  490. package/lib/store/region-selection.d.ts +36 -0
  491. package/lib/store/region-source-scope.d.ts +68 -0
  492. package/lib/store/region-store.service.d.ts +312 -116
  493. package/lib/store/visualizer-store.service.d.ts +32 -33
  494. package/lib/toast-outlets.d.ts +4 -3
  495. package/lib/toolbar/brush/brush-tool.service.d.ts +31 -98
  496. package/lib/toolbar/canvas-tools.d.ts +20 -0
  497. package/lib/toolbar/crop/slide-crop.d.ts +10 -4
  498. package/lib/toolbar/plot-type-selector/plot-type-selector.component.d.ts +38 -0
  499. package/lib/toolbar/region-tools/region-tool-buttons.d.ts +21 -0
  500. package/lib/toolbar/region-tools/region-tools.component.d.ts +62 -0
  501. package/lib/toolbar/segmentation/cell-segment-tool.service.d.ts +10 -14
  502. package/lib/toolbar/segmentation/cellpose-segmenter.service.d.ts +12 -2
  503. package/lib/toolbar/segmentation/onnx-sam-session.d.ts +22 -3
  504. package/lib/toolbar/segmentation/pending-calls.d.ts +31 -0
  505. package/lib/toolbar/segmentation/sam-model-registry.d.ts +9 -3
  506. package/lib/toolbar/segmentation/sam-onnx-core.d.ts +18 -5
  507. package/lib/toolbar/segmentation/sam-point-tool.service.d.ts +46 -32
  508. package/lib/toolbar/segmentation/sam-prompt.d.ts +7 -31
  509. package/lib/toolbar/segmentation/sam-session.service.d.ts +74 -0
  510. package/lib/toolbar/segmentation/sam-tool.service.d.ts +23 -30
  511. package/lib/toolbar/segmentation/segmentation-commit.d.ts +8 -0
  512. package/lib/toolbar/segmentation/segmentation-runner.d.ts +52 -0
  513. package/lib/toolbar/segmentation-tools/segmentation-tools.component.d.ts +87 -0
  514. package/lib/toolbar/stack-controls/stack-controls.component.d.ts +51 -0
  515. package/lib/toolbar/tool-kit/async-tool-status.d.ts +21 -0
  516. package/lib/toolbar/tool-kit/canvas-tool-manager.d.ts +36 -0
  517. package/lib/toolbar/tool-kit/canvas-tool.d.ts +86 -0
  518. package/lib/toolbar/tool-kit/frame-pixels.d.ts +45 -0
  519. package/lib/toolbar/tool-kit/mask-stroke-editor.d.ts +125 -0
  520. package/lib/toolbar/tool-kit/matrix-frame.d.ts +40 -0
  521. package/lib/toolbar/tool-kit/tool-overlay.d.ts +60 -0
  522. package/lib/toolbar/tool-kit/undo-gesture.d.ts +17 -0
  523. package/lib/toolbar/tool-slider/tool-slider.component.d.ts +33 -0
  524. package/lib/toolbar/toolbar-help-dialog/toolbar-help-dialog.component.d.ts +24 -0
  525. package/lib/toolbar/toolbar.component.d.ts +55 -84
  526. package/lib/toolbar/vertex-eraser/vertex-eraser-tool.service.d.ts +33 -40
  527. package/lib/toolbar/view-controls/view-controls.component.d.ts +54 -0
  528. package/lib/toolbar/wand/wand-region-grow.d.ts +49 -0
  529. package/lib/toolbar/wand/wand-tool.service.d.ts +39 -124
  530. package/lib/toolbar/wand/wand.service.d.ts +22 -116
  531. package/lib/toolbar/zoom-to-box/zoom-to-box-tool.service.d.ts +17 -37
  532. package/lib/util/mark-for-check.d.ts +11 -0
  533. package/lib/util/supersede.d.ts +53 -0
  534. package/lib/visualization.module.d.ts +18 -39
  535. package/lib/visualizer/floating-drag.directive.d.ts +30 -0
  536. package/lib/visualizer/region-actions.d.ts +54 -0
  537. package/lib/visualizer/region-load.d.ts +46 -0
  538. package/lib/visualizer/spatial-dataset-binder.d.ts +74 -0
  539. package/lib/visualizer/tool-modes.d.ts +49 -0
  540. package/lib/visualizer/viewer-shortcuts.d.ts +71 -0
  541. package/lib/visualizer/visualizer-context-menu.d.ts +55 -0
  542. package/lib/visualizer/volume-sections.d.ts +64 -0
  543. package/lib/visualizer.component.d.ts +232 -447
  544. package/lib/workers/spatial-math-ops.d.ts +65 -0
  545. package/lib/workers/spatial-math-worker.d.ts +7 -0
  546. package/lib/workers/spatial-math.d.ts +74 -0
  547. package/package.json +12 -3
  548. package/src/lib/assets/slice.svg +23 -0
  549. package/src/lib/styles/_viz-icons-rules.scss +73 -0
  550. package/src/lib/styles/viz-icons.scss +14 -0
  551. package/esm2022/lib/implementations/napari-js/napari-axes-labels.mjs +0 -97
  552. package/esm2022/lib/implementations/napari-js/napari-navigator.mjs +0 -195
  553. package/esm2022/lib/implementations/napari-js/napari-scale-bar.mjs +0 -92
  554. package/fesm2022/jax-data-science-sci-image-visualizer-onnx-sam-session-BwP-A11m.mjs +0 -329
  555. package/fesm2022/jax-data-science-sci-image-visualizer-onnx-sam-session-BwP-A11m.mjs.map +0 -1
  556. package/lib/implementations/napari-js/napari-axes-labels.d.ts +0 -49
  557. package/lib/implementations/napari-js/napari-navigator.d.ts +0 -72
  558. package/lib/implementations/napari-js/napari-scale-bar.d.ts +0 -35
  559. package/src/lib/assets/cell-detection.svg +0 -37
  560. package/src/lib/assets/click.svg +0 -1
  561. package/src/lib/assets/colormap-luts.json +0 -1
  562. package/src/lib/assets/edit-selection-white.svg +0 -47
  563. package/src/lib/assets/icons/colormap-earth.png +0 -0
  564. package/src/lib/assets/icons/colormap-placeholder.png +0 -0
  565. package/src/lib/assets/icons/colormap-pubu.png +0 -0
  566. package/src/lib/assets/interactive-segmentation-cursor.svg +0 -1
  567. package/src/lib/assets/picture-segmentation.svg +0 -43
  568. package/src/lib/assets/test/download-379.svg +0 -1
  569. package/src/lib/assets/test/download-98.svg +0 -1
  570. package/src/lib/assets/test/json-1.svg +0 -1
  571. package/src/lib/assets/test/load-53.svg +0 -1
  572. package/src/lib/assets/test/mask-44.svg +0 -1
  573. package/src/lib/assets/test/mask-download-44.svg +0 -15
  574. package/src/lib/assets/test/mask-save-44.svg +0 -11
  575. package/src/lib/assets/test/overlay-1.svg +0 -1
  576. package/src/lib/assets/test/overlay-4.svg +0 -1
  577. package/src/lib/assets/test/region-26.svg +0 -1
  578. package/src/lib/assets/test/save-56.svg +0 -1
  579. package/src/lib/assets/test/upload-43.svg +0 -1
@@ -0,0 +1,129 @@
1
+ /** Opacity of a region's surface in the volume. */
2
+ export const REGION_MESH_OPACITY = 0.55;
3
+ /** While some surfaces are highlighted: theirs (near opaque, so their shape reads) … */
4
+ export const REGION_MESH_HIGHLIGHT_OPACITY = 0.9;
5
+ /** … and the others' (ghosted: still there for context, not in the way). */
6
+ export const REGION_MESH_DIMMED_OPACITY = 0.12;
7
+ /**
8
+ * The region reconstructions shown in a volume view: one translucent surface per region, in its
9
+ * colour, placed in the volume's world box (pixel x, y and slice z mapped onto it the way the
10
+ * volume maps its voxels) and re-placed when the volume's Z is stretched. A surface is updated in
11
+ * place (`setData`, `color`) rather than added again, and picked by napari-js (`pickSurface`).
12
+ *
13
+ * Highlighting is focus + context: the highlighted surfaces turn near opaque and the others fade
14
+ * to a ghost, so the selection stands out while staying in place among its neighbours.
15
+ */
16
+ export class VolumeRegionMeshes {
17
+ constructor(viewer) {
18
+ this.viewer = viewer;
19
+ this.layers = new Map();
20
+ this.highlighted = new Set();
21
+ this.hidden = new Set();
22
+ /** The meshes to show (kept while the volume has no frame yet). */
23
+ this.wanted = [];
24
+ this.frame = null;
25
+ }
26
+ /** Show exactly `meshes` (adding, keeping or removing surfaces). */
27
+ set(meshes) {
28
+ this.wanted = meshes;
29
+ this.sync();
30
+ }
31
+ /** Follow the volume's frame (it opened, or its Z was stretched): re-place every surface. */
32
+ setFrame(frame) {
33
+ this.frame = frame;
34
+ for (const e of this.layers.values())
35
+ e.layer.setData(toWorld(e.mesh.vertices, frame), e.mesh.faces);
36
+ this.sync();
37
+ }
38
+ /** Highlight the surfaces of these keys (none: every surface as usual). */
39
+ setHighlight(keys) {
40
+ this.highlighted = new Set(keys);
41
+ for (const [key, e] of this.layers)
42
+ e.layer.opacity = this.opacityOf(key);
43
+ this.viewer.requestRender();
44
+ }
45
+ /** Hide the surfaces of these keys (they are kept, so showing them again is instant). */
46
+ setHidden(keys) {
47
+ this.hidden = new Set(keys);
48
+ for (const [key, e] of this.layers)
49
+ e.layer.visible = !this.hidden.has(key);
50
+ this.viewer.requestRender();
51
+ }
52
+ /** The front-most surface under screen point (`x`, `y`) (canvas CSS px), or null. */
53
+ pickAt(x, y) {
54
+ if (!this.layers.size)
55
+ return null;
56
+ const ours = new Map([...this.layers.values()].map((e) => [e.layer, e.mesh]));
57
+ const hit = this.viewer.pickSurface(x, y, { pickable: (layer) => ours.has(layer) });
58
+ return hit ? (ours.get(hit.layer) ?? null) : null;
59
+ }
60
+ /** The meshes shown. */
61
+ get shown() {
62
+ return [...this.layers.values()].map((e) => e.mesh);
63
+ }
64
+ clear() {
65
+ for (const [key, e] of [...this.layers])
66
+ this.remove(key, e.layer);
67
+ this.wanted = [];
68
+ }
69
+ sync() {
70
+ const keep = new Map(this.wanted.map((m) => [m.key, m]));
71
+ for (const [key, e] of [...this.layers]) {
72
+ const want = keep.get(key);
73
+ if (!want || !want.faces.length) {
74
+ this.remove(key, e.layer);
75
+ continue;
76
+ }
77
+ // Rebuilt or recoloured: the same surface, updated in place.
78
+ if (want.vertices !== e.mesh.vertices && this.frame) {
79
+ e.layer.setData(toWorld(want.vertices, this.frame), want.faces);
80
+ }
81
+ if (want.color !== e.mesh.color)
82
+ e.layer.color = want.color;
83
+ e.mesh = want;
84
+ }
85
+ if (this.frame) {
86
+ for (const mesh of this.wanted)
87
+ if (!this.layers.has(mesh.key) && mesh.faces.length)
88
+ this.add(mesh);
89
+ }
90
+ this.viewer.requestRender();
91
+ }
92
+ add(mesh) {
93
+ const frame = this.frame;
94
+ const layer = this.viewer.addSurface(toWorld(mesh.vertices, frame), mesh.faces, undefined, {
95
+ name: `region ${mesh.key}`,
96
+ color: mesh.color,
97
+ opacity: this.opacityOf(mesh.key),
98
+ blending: 'translucent',
99
+ fit: 'never',
100
+ });
101
+ layer.visible = !this.hidden.has(mesh.key);
102
+ this.layers.set(mesh.key, { mesh, layer });
103
+ }
104
+ opacityOf(key) {
105
+ if (!this.highlighted.size)
106
+ return REGION_MESH_OPACITY;
107
+ return this.highlighted.has(key) ? REGION_MESH_HIGHLIGHT_OPACITY : REGION_MESH_DIMMED_OPACITY;
108
+ }
109
+ remove(key, layer) {
110
+ this.viewer.layers.remove(layer);
111
+ this.layers.delete(key);
112
+ }
113
+ }
114
+ /**
115
+ * Image px / slice coordinates → the volume's centred world box: pixel x of a `w`-wide image
116
+ * spans the box's width, slice k sits at the middle of its share of the box's depth.
117
+ */
118
+ export function toWorld(vertices, frame) {
119
+ const [w, h, d] = frame.size;
120
+ const [ww, wh, wd] = frame.world;
121
+ const out = new Float32Array(vertices.length);
122
+ for (let i = 0; i < vertices.length; i += 3) {
123
+ out[i] = (vertices[i] / w - 0.5) * ww;
124
+ out[i + 1] = (vertices[i + 1] / h - 0.5) * wh;
125
+ out[i + 2] = ((vertices[i + 2] + 0.5) / d - 0.5) * wd;
126
+ }
127
+ return out;
128
+ }
129
+ //# sourceMappingURL=data:application/json;base64,{"version":3,"file":"napari-volume-region-meshes.js","sourceRoot":"","sources":["../../../../../src/lib/implementations/napari-js/napari-volume-region-meshes.ts"],"names":[],"mappings":"AAsBA,mDAAmD;AACnD,MAAM,CAAC,MAAM,mBAAmB,GAAG,IAAI,CAAC;AACxC,wFAAwF;AACxF,MAAM,CAAC,MAAM,6BAA6B,GAAG,GAAG,CAAC;AACjD,4EAA4E;AAC5E,MAAM,CAAC,MAAM,0BAA0B,GAAG,IAAI,CAAC;AAE/C;;;;;;;;GAQG;AACH,MAAM,OAAO,kBAAkB;IAQ7B,YAA6B,MAAc;QAAd,WAAM,GAAN,MAAM,CAAQ;QAP1B,WAAM,GAAG,IAAI,GAAG,EAAuD,CAAC;QACjF,gBAAW,GAAwB,IAAI,GAAG,EAAE,CAAC;QAC7C,WAAM,GAAwB,IAAI,GAAG,EAAE,CAAC;QAChD,mEAAmE;QAC3D,WAAM,GAA4B,EAAE,CAAC;QACrC,UAAK,GAAuB,IAAI,CAAC;IAEK,CAAC;IAE/C,oEAAoE;IACpE,GAAG,CAAC,MAA+B;QACjC,IAAI,CAAC,MAAM,GAAG,MAAM,CAAC;QACrB,IAAI,CAAC,IAAI,EAAE,CAAC;IACd,CAAC;IAED,6FAA6F;IAC7F,QAAQ,CAAC,KAAkB;QACzB,IAAI,CAAC,KAAK,GAAG,KAAK,CAAC;QACnB,KAAK,MAAM,CAAC,IAAI,IAAI,CAAC,MAAM,CAAC,MAAM,EAAE;YAAE,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC,CAAC,IAAI,CAAC,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;QACrG,IAAI,CAAC,IAAI,EAAE,CAAC;IACd,CAAC;IAED,2EAA2E;IAC3E,YAAY,CAAC,IAAsB;QACjC,IAAI,CAAC,WAAW,GAAG,IAAI,GAAG,CAAC,IAAI,CAAC,CAAC;QACjC,KAAK,MAAM,CAAC,GAAG,EAAE,CAAC,CAAC,IAAI,IAAI,CAAC,MAAM;YAAE,CAAC,CAAC,KAAK,CAAC,OAAO,GAAG,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC;QAC1E,IAAI,CAAC,MAAM,CAAC,aAAa,EAAE,CAAC;IAC9B,CAAC;IAED,yFAAyF;IACzF,SAAS,CAAC,IAAsB;QAC9B,IAAI,CAAC,MAAM,GAAG,IAAI,GAAG,CAAC,IAAI,CAAC,CAAC;QAC5B,KAAK,MAAM,CAAC,GAAG,EAAE,CAAC,CAAC,IAAI,IAAI,CAAC,MAAM;YAAE,CAAC,CAAC,KAAK,CAAC,OAAO,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;QAC5E,IAAI,CAAC,MAAM,CAAC,aAAa,EAAE,CAAC;IAC9B,CAAC;IAED,qFAAqF;IACrF,MAAM,CAAC,CAAS,EAAE,CAAS;QACzB,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI;YAAE,OAAO,IAAI,CAAC;QACnC,MAAM,IAAI,GAAG,IAAI,GAAG,CAAC,CAAC,GAAG,IAAI,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QAC9E,MAAM,GAAG,GAAG,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,QAAQ,EAAE,CAAC,KAAK,EAAE,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;QACpF,OAAO,GAAG,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;IACpD,CAAC;IAED,wBAAwB;IACxB,IAAI,KAAK;QACP,OAAO,CAAC,GAAG,IAAI,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;IACtD,CAAC;IAED,KAAK;QACH,KAAK,MAAM,CAAC,GAAG,EAAE,CAAC,CAAC,IAAI,CAAC,GAAG,IAAI,CAAC,MAAM,CAAC;YAAE,IAAI,CAAC,MAAM,CAAC,GAAG,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC;QACnE,IAAI,CAAC,MAAM,GAAG,EAAE,CAAC;IACnB,CAAC;IAEO,IAAI;QACV,MAAM,IAAI,GAAG,IAAI,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;QACzD,KAAK,MAAM,CAAC,GAAG,EAAE,CAAC,CAAC,IAAI,CAAC,GAAG,IAAI,CAAC,MAAM,CAAC,EAAE,CAAC;YACxC,MAAM,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;YAC3B,IAAI,CAAC,IAAI,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC;gBAChC,IAAI,CAAC,MAAM,CAAC,GAAG,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC;gBAC1B,SAAS;YACX,CAAC;YACD,6DAA6D;YAC7D,IAAI,IAAI,CAAC,QAAQ,KAAK,CAAC,CAAC,IAAI,CAAC,QAAQ,IAAI,IAAI,CAAC,KAAK,EAAE,CAAC;gBACpD,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,OAAO,CAAC,IAAI,CAAC,QAAQ,EAAE,IAAI,CAAC,KAAK,CAAC,EAAE,IAAI,CAAC,KAAK,CAAC,CAAC;YAClE,CAAC;YACD,IAAI,IAAI,CAAC,KAAK,KAAK,CAAC,CAAC,IAAI,CAAC,KAAK;gBAAE,CAAC,CAAC,KAAK,CAAC,KAAK,GAAG,IAAI,CAAC,KAAK,CAAC;YAC5D,CAAC,CAAC,IAAI,GAAG,IAAI,CAAC;QAChB,CAAC;QACD,IAAI,IAAI,CAAC,KAAK,EAAE,CAAC;YACf,KAAK,MAAM,IAAI,IAAI,IAAI,CAAC,MAAM;gBAAE,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,IAAI,CAAC,KAAK,CAAC,MAAM;oBAAE,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;QACtG,CAAC;QACD,IAAI,CAAC,MAAM,CAAC,aAAa,EAAE,CAAC;IAC9B,CAAC;IAEO,GAAG,CAAC,IAAkB;QAC5B,MAAM,KAAK,GAAG,IAAI,CAAC,KAAoB,CAAC;QACxC,MAAM,KAAK,GAAG,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,OAAO,CAAC,IAAI,CAAC,QAAQ,EAAE,KAAK,CAAC,EAAE,IAAI,CAAC,KAAK,EAAE,SAAS,EAAE;YACzF,IAAI,EAAE,UAAU,IAAI,CAAC,GAAG,EAAE;YAC1B,KAAK,EAAE,IAAI,CAAC,KAAK;YACjB,OAAO,EAAE,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,GAAG,CAAC;YACjC,QAAQ,EAAE,aAAa;YACvB,GAAG,EAAE,OAAO;SACb,CAAC,CAAC;QACH,KAAK,CAAC,OAAO,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QAC3C,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,EAAE,EAAE,IAAI,EAAE,KAAK,EAAE,CAAC,CAAC;IAC7C,CAAC;IAEO,SAAS,CAAC,GAAW;QAC3B,IAAI,CAAC,IAAI,CAAC,WAAW,CAAC,IAAI;YAAE,OAAO,mBAAmB,CAAC;QACvD,OAAO,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,6BAA6B,CAAC,CAAC,CAAC,0BAA0B,CAAC;IAChG,CAAC;IAEO,MAAM,CAAC,GAAW,EAAE,KAAmB;QAC7C,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;QACjC,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;IAC1B,CAAC;CACF;AAED;;;GAGG;AACH,MAAM,UAAU,OAAO,CAAC,QAAsB,EAAE,KAAkB;IAChE,MAAM,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,GAAG,KAAK,CAAC,IAAI,CAAC;IAC7B,MAAM,CAAC,EAAE,EAAE,EAAE,EAAE,EAAE,CAAC,GAAG,KAAK,CAAC,KAAK,CAAC;IACjC,MAAM,GAAG,GAAG,IAAI,YAAY,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC;IAC9C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;QAC5C,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,GAAG,CAAC,GAAG,EAAE,CAAC;QACtC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,GAAG,GAAG,CAAC,GAAG,EAAE,CAAC;QAC9C,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,QAAQ,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAC,GAAG,CAAC,GAAG,GAAG,CAAC,GAAG,EAAE,CAAC;IACxD,CAAC;IACD,OAAO,GAAG,CAAC;AACb,CAAC","sourcesContent":["import type { SurfaceLayer, Viewer } from 'napari-js';\n\n/** A region's 3D reconstruction to show in the volume: a mesh in image px (x, y) and slices (z). */\nexport interface RegionMesh3D {\n  /** Identity (a class name): a mesh with the same key and arrays is kept, not rebuilt. */\n  key: string;\n  /** `#rrggbb`. */\n  color: string;\n  /** What hovering it shows (\"HPF · Hippocampal formation\"); default: the key. */\n  label?: string;\n  vertices: Float32Array;\n  faces: Uint32Array;\n}\n\n/** Where the stack sits in the volume's world: its full size, and the centred world box it fills. */\nexport interface VolumeFrame {\n  /** Image width, height (px) and slice count. */\n  size: [number, number, number];\n  /** The world box (centred on the origin), Z as currently stretched. */\n  world: [number, number, number];\n}\n\n/** Opacity of a region's surface in the volume. */\nexport const REGION_MESH_OPACITY = 0.55;\n/** While some surfaces are highlighted: theirs (near opaque, so their shape reads) … */\nexport const REGION_MESH_HIGHLIGHT_OPACITY = 0.9;\n/** … and the others' (ghosted: still there for context, not in the way). */\nexport const REGION_MESH_DIMMED_OPACITY = 0.12;\n\n/**\n * The region reconstructions shown in a volume view: one translucent surface per region, in its\n * colour, placed in the volume's world box (pixel x, y and slice z mapped onto it the way the\n * volume maps its voxels) and re-placed when the volume's Z is stretched. A surface is updated in\n * place (`setData`, `color`) rather than added again, and picked by napari-js (`pickSurface`).\n *\n * Highlighting is focus + context: the highlighted surfaces turn near opaque and the others fade\n * to a ghost, so the selection stands out while staying in place among its neighbours.\n */\nexport class VolumeRegionMeshes {\n  private readonly layers = new Map<string, { mesh: RegionMesh3D; layer: SurfaceLayer }>();\n  private highlighted: ReadonlySet<string> = new Set();\n  private hidden: ReadonlySet<string> = new Set();\n  /** The meshes to show (kept while the volume has no frame yet). */\n  private wanted: readonly RegionMesh3D[] = [];\n  private frame: VolumeFrame | null = null;\n\n  constructor(private readonly viewer: Viewer) {}\n\n  /** Show exactly `meshes` (adding, keeping or removing surfaces). */\n  set(meshes: readonly RegionMesh3D[]): void {\n    this.wanted = meshes;\n    this.sync();\n  }\n\n  /** Follow the volume's frame (it opened, or its Z was stretched): re-place every surface. */\n  setFrame(frame: VolumeFrame): void {\n    this.frame = frame;\n    for (const e of this.layers.values()) e.layer.setData(toWorld(e.mesh.vertices, frame), e.mesh.faces);\n    this.sync();\n  }\n\n  /** Highlight the surfaces of these keys (none: every surface as usual). */\n  setHighlight(keys: Iterable<string>): void {\n    this.highlighted = new Set(keys);\n    for (const [key, e] of this.layers) e.layer.opacity = this.opacityOf(key);\n    this.viewer.requestRender();\n  }\n\n  /** Hide the surfaces of these keys (they are kept, so showing them again is instant). */\n  setHidden(keys: Iterable<string>): void {\n    this.hidden = new Set(keys);\n    for (const [key, e] of this.layers) e.layer.visible = !this.hidden.has(key);\n    this.viewer.requestRender();\n  }\n\n  /** The front-most surface under screen point (`x`, `y`) (canvas CSS px), or null. */\n  pickAt(x: number, y: number): RegionMesh3D | null {\n    if (!this.layers.size) return null;\n    const ours = new Map([...this.layers.values()].map((e) => [e.layer, e.mesh]));\n    const hit = this.viewer.pickSurface(x, y, { pickable: (layer) => ours.has(layer) });\n    return hit ? (ours.get(hit.layer) ?? null) : null;\n  }\n\n  /** The meshes shown. */\n  get shown(): RegionMesh3D[] {\n    return [...this.layers.values()].map((e) => e.mesh);\n  }\n\n  clear(): void {\n    for (const [key, e] of [...this.layers]) this.remove(key, e.layer);\n    this.wanted = [];\n  }\n\n  private sync(): void {\n    const keep = new Map(this.wanted.map((m) => [m.key, m]));\n    for (const [key, e] of [...this.layers]) {\n      const want = keep.get(key);\n      if (!want || !want.faces.length) {\n        this.remove(key, e.layer);\n        continue;\n      }\n      // Rebuilt or recoloured: the same surface, updated in place.\n      if (want.vertices !== e.mesh.vertices && this.frame) {\n        e.layer.setData(toWorld(want.vertices, this.frame), want.faces);\n      }\n      if (want.color !== e.mesh.color) e.layer.color = want.color;\n      e.mesh = want;\n    }\n    if (this.frame) {\n      for (const mesh of this.wanted) if (!this.layers.has(mesh.key) && mesh.faces.length) this.add(mesh);\n    }\n    this.viewer.requestRender();\n  }\n\n  private add(mesh: RegionMesh3D): void {\n    const frame = this.frame as VolumeFrame;\n    const layer = this.viewer.addSurface(toWorld(mesh.vertices, frame), mesh.faces, undefined, {\n      name: `region ${mesh.key}`,\n      color: mesh.color,\n      opacity: this.opacityOf(mesh.key),\n      blending: 'translucent',\n      fit: 'never',\n    });\n    layer.visible = !this.hidden.has(mesh.key);\n    this.layers.set(mesh.key, { mesh, layer });\n  }\n\n  private opacityOf(key: string): number {\n    if (!this.highlighted.size) return REGION_MESH_OPACITY;\n    return this.highlighted.has(key) ? REGION_MESH_HIGHLIGHT_OPACITY : REGION_MESH_DIMMED_OPACITY;\n  }\n\n  private remove(key: string, layer: SurfaceLayer): void {\n    this.viewer.layers.remove(layer);\n    this.layers.delete(key);\n  }\n}\n\n/**\n * Image px / slice coordinates → the volume's centred world box: pixel x of a `w`-wide image\n * spans the box's width, slice k sits at the middle of its share of the box's depth.\n */\nexport function toWorld(vertices: Float32Array, frame: VolumeFrame): Float32Array {\n  const [w, h, d] = frame.size;\n  const [ww, wh, wd] = frame.world;\n  const out = new Float32Array(vertices.length);\n  for (let i = 0; i < vertices.length; i += 3) {\n    out[i] = (vertices[i] / w - 0.5) * ww;\n    out[i + 1] = (vertices[i + 1] / h - 0.5) * wh;\n    out[i + 2] = ((vertices[i + 2] + 0.5) / d - 0.5) * wd;\n  }\n  return out;\n}\n"]}