@jax-data-science/sci-image-visualizer 0.8.3 → 0.10.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +201 -460
- package/esm2022/index.mjs +34 -15
- package/esm2022/lib/channel-histogram/channel-histogram.component.mjs +163 -91
- package/esm2022/lib/contracts/capabilities.contract.mjs +4 -3
- package/esm2022/lib/contracts/cell-segmenter.contract.mjs +1 -1
- package/esm2022/lib/contracts/channel-histogram-api.contract.mjs +5 -1
- package/esm2022/lib/contracts/color.mjs +60 -0
- package/esm2022/lib/contracts/colormap-lut.mjs +213 -57
- package/esm2022/lib/contracts/coordinate-transform.contract.mjs +1 -1
- package/esm2022/lib/contracts/display-types.mjs +11 -1
- package/esm2022/lib/contracts/image.contract.mjs +1 -1
- package/esm2022/lib/contracts/instance-segmenter.contract.mjs +1 -1
- package/esm2022/lib/contracts/intensity.mjs +48 -5
- package/esm2022/lib/contracts/plot-type-contribution.contract.mjs +1 -1
- package/esm2022/lib/contracts/plot-type.mjs +134 -17
- package/esm2022/lib/contracts/ports/image-state.port.mjs +4 -1
- package/esm2022/lib/contracts/ports/preferences.port.mjs +5 -1
- package/esm2022/lib/contracts/ports/region-io.port.mjs +2 -1
- package/esm2022/lib/contracts/ports/spatial-data.port.mjs +5 -1
- package/esm2022/lib/contracts/ports/tile-access.port.mjs +2 -1
- package/esm2022/lib/contracts/region-editor-api.contract.mjs +1 -1
- package/esm2022/lib/contracts/region-overlay.contract.mjs +1 -1
- package/esm2022/lib/contracts/region-store.contract.mjs +1 -1
- package/esm2022/lib/contracts/sam.contract.mjs +1 -1
- package/esm2022/lib/contracts/section-view.contract.mjs +2 -0
- package/esm2022/lib/contracts/semantic-segmenter.contract.mjs +1 -1
- package/esm2022/lib/contracts/spatial-dataset.contract.mjs +3 -1
- package/esm2022/lib/contracts/toolbar-tool.contract.mjs +6 -4
- package/esm2022/lib/contracts/visualizer.contract.mjs +1 -1
- package/esm2022/lib/contracts/viz-config.mjs +2 -1
- package/esm2022/lib/geometry/contour.mjs +63 -0
- package/esm2022/lib/geometry/loft.mjs +128 -0
- package/esm2022/lib/geometry/polylabel.mjs +156 -0
- package/esm2022/lib/geometry/raster.mjs +98 -0
- package/esm2022/lib/geometry/reconstruct.mjs +315 -0
- package/esm2022/lib/geometry/reslice-image.mjs +57 -0
- package/esm2022/lib/geometry/ring.mjs +201 -0
- package/esm2022/lib/geometry/section.mjs +215 -0
- package/esm2022/lib/hex-color-picker/hex-color-picker.component.mjs +202 -102
- package/esm2022/lib/implementations/base-store-visualizer.mjs +201 -48
- package/esm2022/lib/implementations/napari-js/napari-axes-gizmo.mjs +65 -0
- package/esm2022/lib/implementations/napari-js/napari-display-state.mjs +136 -0
- package/esm2022/lib/implementations/napari-js/napari-helpers.mjs +199 -0
- package/esm2022/lib/implementations/napari-js/napari-image-2d-scene.mjs +602 -0
- package/esm2022/lib/implementations/napari-js/napari-loading-badge.mjs +12 -9
- package/esm2022/lib/implementations/napari-js/napari-loading-state.mjs +83 -0
- package/esm2022/lib/implementations/napari-js/napari-region-mesh-pointer.mjs +100 -0
- package/esm2022/lib/implementations/napari-js/napari-region-overlay.mjs +180 -591
- package/esm2022/lib/implementations/napari-js/napari-scene.mjs +2 -0
- package/esm2022/lib/implementations/napari-js/napari-spatial-2d-scene.mjs +614 -0
- package/esm2022/lib/implementations/napari-js/napari-spatial-3d-scene.mjs +769 -0
- package/esm2022/lib/implementations/napari-js/napari-spatial-encoding.mjs +199 -0
- package/esm2022/lib/implementations/napari-js/napari-spatial-hover.mjs +270 -0
- package/esm2022/lib/implementations/napari-js/napari-spatial-scene.mjs +159 -0
- package/esm2022/lib/implementations/napari-js/napari-spatial-tiles.mjs +106 -1408
- package/esm2022/lib/implementations/napari-js/napari-spatial-tooltip.mjs +2 -2
- package/esm2022/lib/implementations/napari-js/napari-surface-scene.mjs +271 -0
- package/esm2022/lib/implementations/napari-js/napari-tile-client.mjs +562 -0
- package/esm2022/lib/implementations/napari-js/napari-tool-bridge.mjs +347 -0
- package/esm2022/lib/implementations/napari-js/napari-visualizer.service.mjs +427 -4207
- package/esm2022/lib/implementations/napari-js/napari-volume-region-meshes.mjs +129 -0
- package/esm2022/lib/implementations/napari-js/napari-volume-scene.mjs +550 -0
- package/esm2022/lib/implementations/napari-js/napari-volume-slice-planes.mjs +103 -0
- package/esm2022/lib/implementations/napari-js/napari-volume-z-handle.mjs +6 -6
- package/esm2022/lib/implementations/napari-js/region-overlay/overlay-projection.mjs +96 -0
- package/esm2022/lib/implementations/napari-js/region-overlay/region-edit.mjs +35 -0
- package/esm2022/lib/implementations/napari-js/region-overlay/region-svg-renderer.mjs +194 -0
- package/esm2022/lib/implementations/napari-js/spatial-tiles/categorical-lookup.mjs +30 -0
- package/esm2022/lib/implementations/napari-js/spatial-tiles/cell-layers.mjs +274 -0
- package/esm2022/lib/implementations/napari-js/spatial-tiles/density-layer.mjs +144 -0
- package/esm2022/lib/implementations/napari-js/spatial-tiles/layer-groups.mjs +165 -0
- package/esm2022/lib/implementations/napari-js/spatial-tiles/plan-context.mjs +78 -0
- package/esm2022/lib/implementations/napari-js/spatial-tiles/transcript-hover.mjs +182 -0
- package/esm2022/lib/implementations/napari-js/spatial-tiles/transcript-jobs.mjs +369 -0
- package/esm2022/lib/implementations/napari-js/spatial-tiles/transcript-layers.mjs +306 -0
- package/esm2022/lib/implementations/osd/display-pipeline.mjs +102 -40
- package/esm2022/lib/implementations/osd/histogram-sampler.mjs +56 -31
- package/esm2022/lib/implementations/osd/openseadragon-viewer-options.mjs +128 -0
- package/esm2022/lib/implementations/osd/openseadragon-visualizer.service.mjs +333 -1685
- package/esm2022/lib/implementations/osd/osd-coordinate-transform.mjs +1 -1
- package/esm2022/lib/implementations/osd/osd-coords.mjs +5 -6
- package/esm2022/lib/implementations/osd/osd-export.mjs +122 -0
- package/esm2022/lib/implementations/osd/osd-lib.mjs +15 -1
- package/esm2022/lib/implementations/osd/osd-navigator-chrome.mjs +205 -0
- package/esm2022/lib/implementations/osd/osd-pixel-readback.mjs +68 -0
- package/esm2022/lib/implementations/osd/osd-region-overlay-draw.mjs +164 -0
- package/esm2022/lib/implementations/osd/osd-region-overlay.mjs +213 -716
- package/esm2022/lib/implementations/osd/osd-scale-bar.mjs +52 -60
- package/esm2022/lib/implementations/osd/osd-tile-source.mjs +105 -0
- package/esm2022/lib/implementations/osd/osd-viewer-like.mjs +2 -0
- package/esm2022/lib/implementations/osd/osd-viewer-mount.mjs +44 -0
- package/esm2022/lib/implementations/osd/osd-viewport.mjs +184 -0
- package/esm2022/lib/implementations/osd/osd-zoom.mjs +7 -1
- package/esm2022/lib/implementations/osd/simple-source.mjs +395 -0
- package/esm2022/lib/implementations/osd/slice-cache.mjs +53 -48
- package/esm2022/lib/implementations/osd/tile-client.mjs +32 -11
- package/esm2022/lib/implementations/osd/tile-recolor.mjs +330 -0
- package/esm2022/lib/implementations/plotly/omics-trace-builders.mjs +161 -73
- package/esm2022/lib/implementations/plotly/plotly-coordinate-transform.mjs +1 -1
- package/esm2022/lib/implementations/plotly/plotly-image-loader.mjs +112 -0
- package/esm2022/lib/implementations/plotly/plotly-image-recolor.mjs +178 -0
- package/esm2022/lib/implementations/plotly/plotly-intensity-inset.mjs +33 -0
- package/esm2022/lib/implementations/plotly/plotly-isosurface-controls.mjs +83 -0
- package/esm2022/lib/implementations/plotly/plotly-layouts.mjs +121 -0
- package/esm2022/lib/implementations/plotly/plotly-readback.mjs +117 -0
- package/esm2022/lib/implementations/plotly/plotly-region-overlay.mjs +19 -10
- package/esm2022/lib/implementations/plotly/plotly-shape-projection.mjs +223 -0
- package/esm2022/lib/implementations/plotly/plotly-trace-builders.mjs +79 -19
- package/esm2022/lib/implementations/plotly/plotly-zoom-controller.mjs +223 -0
- package/esm2022/lib/implementations/plotly/plotly.service.mjs +439 -1655
- package/esm2022/lib/implementations/region-centroids.mjs +47 -0
- package/esm2022/lib/implementations/simple-slice-access.service.mjs +22 -12
- package/esm2022/lib/implementations/spatial-data-http/spatial-data-http.service.mjs +172 -92
- package/esm2022/lib/implementations/spatial-data-http/spatial-wire.mjs +103 -22
- package/esm2022/lib/implementations/tile-server/index.mjs +6 -0
- package/esm2022/lib/implementations/tile-server/native-histogram.mjs +30 -0
- package/esm2022/lib/implementations/tile-server/poll-descriptor.mjs +65 -0
- package/esm2022/lib/implementations/tile-server/tile-protocol.mjs +42 -0
- package/esm2022/lib/implementations/tile-server/transport.mjs +135 -0
- package/esm2022/lib/intensity/intensity-profile.mjs +107 -0
- package/esm2022/lib/intensity/intensity-profile.service.mjs +223 -0
- package/esm2022/lib/intensity-inset/intensity-inset.component.mjs +133 -0
- package/esm2022/lib/models/bezier.mjs +1 -11
- package/esm2022/lib/models/class-preset.mjs +41 -3
- package/esm2022/lib/models/geometry.mjs +27 -164
- package/esm2022/lib/models/polygon-edit.mjs +254 -0
- package/esm2022/lib/models/polygon-factory.mjs +134 -0
- package/esm2022/lib/models/region-clone.mjs +68 -0
- package/esm2022/lib/models/region-geojson.mjs +411 -0
- package/esm2022/lib/models/region.mjs +34 -33
- package/esm2022/lib/models/shape.mjs +18 -16
- package/esm2022/lib/plot-mode/contribution-host.mjs +297 -0
- package/esm2022/lib/plot-mode/plot-mode-controller.mjs +9 -6
- package/esm2022/lib/plot-mode/plot-type-menu.mjs +85 -0
- package/esm2022/lib/plot-mode/tool-params-model.mjs +87 -0
- package/esm2022/lib/plot.utilities.mjs +296 -473
- package/esm2022/lib/processing/image-crop.mjs +1 -1
- package/esm2022/lib/processing/processing-image.mjs +28 -15
- package/esm2022/lib/provide-visualization.mjs +40 -14
- package/esm2022/lib/region-editor/class-tree/class-tree.component.mjs +156 -0
- package/esm2022/lib/region-editor/class-tree/class-tree.mjs +108 -0
- package/esm2022/lib/region-editor/classes-panel/classes-panel.component.mjs +163 -0
- package/esm2022/lib/region-editor/file-stem.mjs +13 -0
- package/esm2022/lib/region-editor/manage-classes-dialog/manage-classes-dialog.component.mjs +118 -0
- package/esm2022/lib/region-editor/mask-export.service.mjs +98 -0
- package/esm2022/lib/region-editor/mask-raster.mjs +11 -5
- package/esm2022/lib/region-editor/region-color-dialog/region-color-dialog.component.mjs +56 -0
- package/esm2022/lib/region-editor/region-editor-help/region-editor-help.component.mjs +28 -0
- package/esm2022/lib/region-editor/region-editor.component.mjs +896 -660
- package/esm2022/lib/region-editor/region-metrics.mjs +86 -0
- package/esm2022/lib/region-editor/region-persistence.service.mjs +160 -0
- package/esm2022/lib/region-editor/region-table/region-table.component.mjs +169 -0
- package/esm2022/lib/region-editor/save-mask-dialog/save-mask-dialog.component.mjs +91 -0
- package/esm2022/lib/region-editor/save-regions-dialog/save-regions-dialog.component.mjs +92 -0
- package/esm2022/lib/region-ops.service.mjs +28 -70
- package/esm2022/lib/region-overlay/region-geometry.mjs +360 -0
- package/esm2022/lib/region-overlay/region-hit-test.mjs +103 -0
- package/esm2022/lib/region-overlay/region-source-layer.mjs +378 -0
- package/esm2022/lib/region-overlay/region-style.mjs +97 -0
- package/esm2022/lib/region-overlay/svg-region-renderer.mjs +228 -0
- package/esm2022/lib/region-source/http-region-source.mjs +104 -0
- package/esm2022/lib/region-source/region-source-ops.mjs +53 -0
- package/esm2022/lib/region-source/region-source-worker.mjs +10 -0
- package/esm2022/lib/region-source/region-source.mjs +67 -0
- package/esm2022/lib/region-source/region-tiles.mjs +708 -0
- package/esm2022/lib/region-source/worker-region-source.mjs +229 -0
- package/esm2022/lib/render-orchestrator.mjs +14 -11
- package/esm2022/lib/render-session.mjs +207 -0
- package/esm2022/lib/routing-visualizer.service.mjs +858 -414
- package/esm2022/lib/section-pane/section-pane.component.mjs +299 -0
- package/esm2022/lib/spatial/density-raster.mjs +14 -0
- package/esm2022/lib/spatial/embedding-compute-coordinator.mjs +239 -0
- package/esm2022/lib/spatial/embedding-compute.mjs +43 -10
- package/esm2022/lib/spatial/gene-search.mjs +1 -1
- package/esm2022/lib/spatial/glyphs.mjs +97 -0
- package/esm2022/lib/spatial/lod.mjs +187 -0
- package/esm2022/lib/spatial/spatial-controls.facade.mjs +200 -0
- package/esm2022/lib/spatial/spatial-density.mjs +25 -16
- package/esm2022/lib/spatial/spatial-encoding.mjs +26 -82
- package/esm2022/lib/spatial/spatial-expression.mjs +43 -42
- package/esm2022/lib/spatial/spatial-framing.mjs +1 -1
- package/esm2022/lib/spatial/spatial-heatmap.mjs +6 -3
- package/esm2022/lib/spatial/spatial-hover.mjs +5 -33
- package/esm2022/lib/spatial/spatial-panel-model.mjs +282 -0
- package/esm2022/lib/spatial/spatial-sections.mjs +1 -1
- package/esm2022/lib/spatial/spatial-selection.mjs +33 -46
- package/esm2022/lib/spatial/spatial-tile-merge.mjs +219 -0
- package/esm2022/lib/spatial/spatial-tiles.mjs +12 -648
- package/esm2022/lib/spatial/spatial-volume-image.mjs +2 -4
- package/esm2022/lib/spatial/stats.mjs +71 -0
- package/esm2022/lib/spatial/transcript-grouping.mjs +307 -0
- package/esm2022/lib/spatial-controls/spatial-cells-panel/spatial-cells-panel.component.mjs +150 -0
- package/esm2022/lib/spatial-controls/spatial-charts/chart-data-model.mjs +309 -0
- package/esm2022/lib/spatial-controls/spatial-charts/chart-help.mjs +145 -0
- package/esm2022/lib/spatial-controls/spatial-charts/plotly-chart-host.mjs +158 -0
- package/esm2022/lib/spatial-controls/spatial-charts/spatial-chart-window/spatial-chart-window.component.mjs +47 -0
- package/esm2022/lib/spatial-controls/spatial-charts/spatial-charts.component.mjs +297 -802
- package/esm2022/lib/spatial-controls/spatial-charts/spatial-embedding-controls/spatial-embedding-controls.component.mjs +89 -0
- package/esm2022/lib/spatial-controls/spatial-charts/spatial-heatmap-controls/spatial-heatmap-controls.component.mjs +52 -0
- package/esm2022/lib/spatial-controls/spatial-controls.component.mjs +143 -1238
- package/esm2022/lib/spatial-controls/spatial-gene-picker.mjs +153 -0
- package/esm2022/lib/spatial-controls/spatial-gene-tree/spatial-gene-tree.component.mjs +241 -0
- package/esm2022/lib/spatial-controls/spatial-groups-panel/spatial-groups-panel.component.mjs +193 -0
- package/esm2022/lib/spatial-controls/spatial-key/spatial-key.component.mjs +132 -0
- package/esm2022/lib/spatial-controls/spatial-key/spatial-key.model.mjs +67 -0
- package/esm2022/lib/spatial-controls/spatial-marker-genes-form/spatial-marker-genes-form.component.mjs +147 -0
- package/esm2022/lib/spatial-controls/spatial-observations-panel/spatial-observations-panel.component.mjs +300 -0
- package/esm2022/lib/spatial-controls/spatial-transcripts-panel/spatial-transcripts-panel.component.mjs +370 -0
- package/esm2022/lib/store/class-color.util.mjs +53 -5
- package/esm2022/lib/store/class-signatures.mjs +63 -0
- package/esm2022/lib/store/region-history.mjs +146 -0
- package/esm2022/lib/store/region-scope-cache.mjs +144 -0
- package/esm2022/lib/store/region-selection.mjs +82 -0
- package/esm2022/lib/store/region-source-scope.mjs +171 -0
- package/esm2022/lib/store/region-store.service.mjs +986 -670
- package/esm2022/lib/store/spatial-selection.service.mjs +2 -2
- package/esm2022/lib/store/visualizer-store.service.mjs +81 -76
- package/esm2022/lib/toast-outlets.mjs +5 -4
- package/esm2022/lib/toolbar/brush/brush-tool.service.mjs +92 -434
- package/esm2022/lib/toolbar/canvas-tools.mjs +20 -0
- package/esm2022/lib/toolbar/crop/slide-crop.mjs +26 -42
- package/esm2022/lib/toolbar/plot-type-selector/plot-type-selector.component.mjs +85 -0
- package/esm2022/lib/toolbar/region-tools/region-tool-buttons.mjs +74 -0
- package/esm2022/lib/toolbar/region-tools/region-tools.component.mjs +120 -0
- package/esm2022/lib/toolbar/segmentation/cell-segment-tool.service.mjs +74 -78
- package/esm2022/lib/toolbar/segmentation/cellpose-segmenter.service.mjs +50 -8
- package/esm2022/lib/toolbar/segmentation/onnx-sam-session.mjs +61 -42
- package/esm2022/lib/toolbar/segmentation/pending-calls.mjs +47 -0
- package/esm2022/lib/toolbar/segmentation/sam-model-registry.mjs +12 -4
- package/esm2022/lib/toolbar/segmentation/sam-onnx-core.mjs +70 -14
- package/esm2022/lib/toolbar/segmentation/sam-point-tool.service.mjs +135 -172
- package/esm2022/lib/toolbar/segmentation/sam-prompt.mjs +9 -90
- package/esm2022/lib/toolbar/segmentation/sam-session.service.mjs +183 -0
- package/esm2022/lib/toolbar/segmentation/sam-tool.service.mjs +95 -150
- package/esm2022/lib/toolbar/segmentation/segmentation-commit.mjs +12 -0
- package/esm2022/lib/toolbar/segmentation/segmentation-runner.mjs +108 -0
- package/esm2022/lib/toolbar/segmentation-tools/segmentation-tools.component.mjs +155 -0
- package/esm2022/lib/toolbar/stack-controls/stack-controls.component.mjs +121 -0
- package/esm2022/lib/toolbar/tool-kit/async-tool-status.mjs +37 -0
- package/esm2022/lib/toolbar/tool-kit/canvas-tool-manager.mjs +63 -0
- package/esm2022/lib/toolbar/tool-kit/canvas-tool.mjs +2 -0
- package/esm2022/lib/toolbar/tool-kit/frame-pixels.mjs +108 -0
- package/esm2022/lib/toolbar/tool-kit/mask-stroke-editor.mjs +306 -0
- package/esm2022/lib/toolbar/tool-kit/matrix-frame.mjs +61 -0
- package/esm2022/lib/toolbar/tool-kit/tool-overlay.mjs +140 -0
- package/esm2022/lib/toolbar/tool-kit/undo-gesture.mjs +24 -0
- package/esm2022/lib/toolbar/tool-slider/tool-slider.component.mjs +63 -0
- package/esm2022/lib/toolbar/toolbar-help-dialog/toolbar-help-dialog.component.mjs +50 -0
- package/esm2022/lib/toolbar/toolbar.component.mjs +84 -119
- package/esm2022/lib/toolbar/vertex-eraser/vertex-eraser-tool.service.mjs +93 -115
- package/esm2022/lib/toolbar/view-controls/view-controls.component.mjs +107 -0
- package/esm2022/lib/toolbar/wand/wand-region-grow.mjs +321 -0
- package/esm2022/lib/toolbar/wand/wand-tool.service.mjs +121 -416
- package/esm2022/lib/toolbar/wand/wand.service.mjs +30 -894
- package/esm2022/lib/toolbar/zoom-to-box/zoom-to-box-tool.service.mjs +48 -90
- package/esm2022/lib/util/mark-for-check.mjs +17 -0
- package/esm2022/lib/util/supersede.mjs +56 -0
- package/esm2022/lib/visualization.module.mjs +39 -141
- package/esm2022/lib/visualizer/floating-drag.directive.mjs +58 -0
- package/esm2022/lib/visualizer/region-actions.mjs +149 -0
- package/esm2022/lib/visualizer/region-load.mjs +123 -0
- package/esm2022/lib/visualizer/spatial-dataset-binder.mjs +163 -0
- package/esm2022/lib/visualizer/tool-modes.mjs +113 -0
- package/esm2022/lib/visualizer/viewer-shortcuts.mjs +167 -0
- package/esm2022/lib/visualizer/visualizer-context-menu.mjs +119 -0
- package/esm2022/lib/visualizer/volume-sections.mjs +175 -0
- package/esm2022/lib/visualizer.component.mjs +602 -1902
- package/esm2022/lib/workers/spatial-math-ops.mjs +43 -0
- package/esm2022/lib/workers/spatial-math-worker.mjs +10 -0
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+
import { Region } from '../models/region';
|
|
3
|
+
import * as i0 from "@angular/core";
|
|
4
|
+
/** Mask type: one foreground value, or a distinct id per region. */
|
|
5
|
+
export type MaskMode = 'binary' | 'multiclass';
|
|
6
|
+
/** What to rasterize, at the full image size. */
|
|
7
|
+
export interface MaskExportRequest {
|
|
8
|
+
regions: Region[];
|
|
9
|
+
imageSize: {
|
|
10
|
+
width: number;
|
|
11
|
+
height: number;
|
|
12
|
+
};
|
|
13
|
+
mode: MaskMode;
|
|
14
|
+
/** Recorded in the PNG metadata. */
|
|
15
|
+
sourceName?: string;
|
|
16
|
+
}
|
|
17
|
+
/** Progress of one mask export, in order: planned → progress* → encoding → done. */
|
|
18
|
+
export type MaskExportEvent =
|
|
19
|
+
/** The mask size; `scale` < 1 when the image exceeds the pixel budget. */
|
|
20
|
+
{
|
|
21
|
+
type: 'planned';
|
|
22
|
+
width: number;
|
|
23
|
+
height: number;
|
|
24
|
+
scale: number;
|
|
25
|
+
}
|
|
26
|
+
/** 0–100 rasterization progress. */
|
|
27
|
+
| {
|
|
28
|
+
type: 'progress';
|
|
29
|
+
percent: number;
|
|
30
|
+
}
|
|
31
|
+
/** Rasterizing finished; the PNG is being encoded. */
|
|
32
|
+
| {
|
|
33
|
+
type: 'encoding';
|
|
34
|
+
} | {
|
|
35
|
+
type: 'done';
|
|
36
|
+
blob: Blob;
|
|
37
|
+
};
|
|
38
|
+
/**
|
|
39
|
+
* Rasterizes regions to a label-mask PNG in a Web Worker (jit-ui#95), so the
|
|
40
|
+
* full-resolution rasterize and PNG encode never freeze the UI and the job can
|
|
41
|
+
* be cancelled. Component-agnostic: {@link export} returns a cold Observable —
|
|
42
|
+
* subscribing starts a worker, unsubscribing terminates it (cancel), and a
|
|
43
|
+
* worker failure is an error carrying a user-facing message. Whole-slide
|
|
44
|
+
* images are capped to a safe pixel budget (the geometry is scaled to match).
|
|
45
|
+
*/
|
|
46
|
+
export declare class MaskExportService {
|
|
47
|
+
export(request: MaskExportRequest): Observable<MaskExportEvent>;
|
|
48
|
+
/** Worker factory: a dynamic import, so the worker module (and its
|
|
49
|
+
* `import.meta.url`, which the CommonJS test compile rejects) loads lazily.
|
|
50
|
+
* Overridable in tests. */
|
|
51
|
+
protected createWorker(): Promise<Worker>;
|
|
52
|
+
static ɵfac: i0.ɵɵFactoryDeclaration<MaskExportService, never>;
|
|
53
|
+
static ɵprov: i0.ɵɵInjectableDeclaration<MaskExportService>;
|
|
54
|
+
}
|
|
@@ -1,4 +1,6 @@
|
|
|
1
1
|
import { Region } from '../models/region';
|
|
2
|
+
import type { BBoxMask } from '../geometry/raster';
|
|
3
|
+
export type { BBoxMask };
|
|
2
4
|
/** A single closed ring (+ optional holes) in image-pixel coordinates. A region
|
|
3
5
|
* rasterizes as the union of its parts. Plain data so it survives a
|
|
4
6
|
* `postMessage` structured clone into the mask worker. */
|
|
@@ -7,14 +9,6 @@ export interface MaskPart {
|
|
|
7
9
|
ypoints: number[];
|
|
8
10
|
holes?: number[][][];
|
|
9
11
|
}
|
|
10
|
-
/** A bbox-relative binary mask, as returned by `WandService.rasterizePolygon`. */
|
|
11
|
-
export interface BBoxMask {
|
|
12
|
-
bx: number;
|
|
13
|
-
by: number;
|
|
14
|
-
bw: number;
|
|
15
|
-
bh: number;
|
|
16
|
-
mask: Uint8Array;
|
|
17
|
-
}
|
|
18
12
|
/** Polygon-fill function (the wand's scanline rasterizer), injected so this
|
|
19
13
|
* module stays free of Angular/DOM and can run inside a worker. */
|
|
20
14
|
export type RasterizeFn = (xpoints: number[], ypoints: number[], imageWidth: number, imageHeight: number, holes?: number[][][]) => BBoxMask | null;
|
|
@@ -0,0 +1,29 @@
|
|
|
1
|
+
import { EventEmitter } from '@angular/core';
|
|
2
|
+
import * as i0 from "@angular/core";
|
|
3
|
+
/** One class's colour in the dialog; `label` '' groups unclassified regions. */
|
|
4
|
+
export interface ClassColorEdit {
|
|
5
|
+
label: string;
|
|
6
|
+
color: string;
|
|
7
|
+
}
|
|
8
|
+
/**
|
|
9
|
+
* "Edit colour of selected regions": one picker per class among the selection.
|
|
10
|
+
* Edits a private copy of `edits` and reports the result on Apply; the editor
|
|
11
|
+
* applies it to the regions (copy-on-write) and commits.
|
|
12
|
+
*/
|
|
13
|
+
export declare class RegionColorDialogComponent {
|
|
14
|
+
/** The dialog is open. */
|
|
15
|
+
visible: boolean;
|
|
16
|
+
/** The dialog was closed (`false`); two-way with {@link visible}. */
|
|
17
|
+
visibleChange: EventEmitter<boolean>;
|
|
18
|
+
/** Number of selected regions, for the caption. */
|
|
19
|
+
selectedCount: number;
|
|
20
|
+
/** The seeded colours; the dialog edits a copy. */
|
|
21
|
+
set edits(value: ClassColorEdit[] | null | undefined);
|
|
22
|
+
/** Apply clicked: the edited colours per class. */
|
|
23
|
+
apply: EventEmitter<ClassColorEdit[]>;
|
|
24
|
+
protected draft: ClassColorEdit[];
|
|
25
|
+
protected setColor(i: number, color: string): void;
|
|
26
|
+
protected close(): void;
|
|
27
|
+
static ɵfac: i0.ɵɵFactoryDeclaration<RegionColorDialogComponent, never>;
|
|
28
|
+
static ɵcmp: i0.ɵɵComponentDeclaration<RegionColorDialogComponent, "region-color-dialog", never, { "visible": { "alias": "visible"; "required": false; }; "selectedCount": { "alias": "selectedCount"; "required": false; }; "edits": { "alias": "edits"; "required": false; }; }, { "visibleChange": "visibleChange"; "apply": "apply"; }, never, never, true, never>;
|
|
29
|
+
}
|
|
@@ -0,0 +1,11 @@
|
|
|
1
|
+
import { EventEmitter } from '@angular/core';
|
|
2
|
+
import * as i0 from "@angular/core";
|
|
3
|
+
/** The Region Editor's help dialog (static content). */
|
|
4
|
+
export declare class RegionEditorHelpComponent {
|
|
5
|
+
/** The dialog is open. */
|
|
6
|
+
visible: boolean;
|
|
7
|
+
/** The dialog was closed (`false`); two-way with {@link visible}. */
|
|
8
|
+
visibleChange: EventEmitter<boolean>;
|
|
9
|
+
static ɵfac: i0.ɵɵFactoryDeclaration<RegionEditorHelpComponent, never>;
|
|
10
|
+
static ɵcmp: i0.ɵɵComponentDeclaration<RegionEditorHelpComponent, "region-editor-help", never, { "visible": { "alias": "visible"; "required": false; }; }, { "visibleChange": "visibleChange"; }, never, never, true, never>;
|
|
11
|
+
}
|