@jamesaphoenix/tx-core 0.4.2 → 0.4.3

package/dist/repo/compaction-repo.js

@@ -0,0 +1,84 @@
+import { Context, Effect, Layer } from "effect";
+import { SqliteClient } from "../db.js";
+import { DatabaseError, EntityFetchError } from "../errors.js";
+/**
+ * Safely parse a JSON array of task ID strings, returning empty array on failure.
+ */
+const safeParseTaskIds = (json) => {
+    try {
+        const parsed = JSON.parse(json || "[]");
+        return Array.isArray(parsed) ? parsed.filter((v) => typeof v === "string") : [];
+    }
+    catch {
+        return [];
+    }
+};
+/**
+ * Map database row to domain entity.
+ */
+const rowToCompactionLogEntry = (row) => ({
+    id: row.id,
+    compactedAt: new Date(row.compacted_at),
+    taskCount: row.task_count,
+    summary: row.summary,
+    taskIds: safeParseTaskIds(row.task_ids),
+    learningsExportedTo: row.learnings_exported_to,
+    learnings: row.learnings
+});
+/**
+ * Repository for compaction_log table operations.
+ * Handles storage of compaction history and summaries.
+ */
+export class CompactionRepository extends Context.Tag("CompactionRepository")() {
+}
+export const CompactionRepositoryLive = Layer.effect(CompactionRepository, Effect.gen(function* () {
+    const db = yield* SqliteClient;
+    return {
+        insert: (input) => Effect.try({
+            try: () => {
+                const now = new Date().toISOString();
+                const result = db.prepare(`INSERT INTO compaction_log (compacted_at, task_count, summary, task_ids, learnings_exported_to, learnings)
+               VALUES (?, ?, ?, ?, ?, ?)`).run(now, input.taskCount, input.summary, JSON.stringify(input.taskIds), input.learningsExportedTo ?? null, input.learnings);
+                const row = db.prepare("SELECT * FROM compaction_log WHERE id = ?").get(result.lastInsertRowid);
+                if (!row) {
+                    throw new EntityFetchError({
+                        entity: "compaction_log",
+                        id: result.lastInsertRowid,
+                        operation: "insert"
+                    });
+                }
+                return rowToCompactionLogEntry(row);
+            },
+            catch: (cause) => new DatabaseError({ cause })
+        }),
+        findById: (id) => Effect.try({
+            try: () => {
+                const row = db.prepare("SELECT * FROM compaction_log WHERE id = ?").get(id);
+                return row ? rowToCompactionLogEntry(row) : null;
+            },
+            catch: (cause) => new DatabaseError({ cause })
+        }),
+        findAll: () => Effect.try({
+            try: () => {
+                const rows = db.prepare(`SELECT * FROM compaction_log ORDER BY compacted_at DESC`).all();
+                return rows.map(rowToCompactionLogEntry);
+            },
+            catch: (cause) => new DatabaseError({ cause })
+        }),
+        findRecent: (limit) => Effect.try({
+            try: () => {
+                const rows = db.prepare(`SELECT * FROM compaction_log ORDER BY compacted_at DESC LIMIT ?`).all(limit);
+                return rows.map(rowToCompactionLogEntry);
+            },
+            catch: (cause) => new DatabaseError({ cause })
+        }),
+        count: () => Effect.try({
+            try: () => {
+                const result = db.prepare("SELECT COUNT(*) as cnt FROM compaction_log").get();
+                return result.cnt;
+            },
+            catch: (cause) => new DatabaseError({ cause })
+        })
+    };
+}));
+//# sourceMappingURL=compaction-repo.js.map

package/dist/repo/compaction-repo.js.map

@@ -0,0 +1 @@
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package/dist/repo/deduplication-repo.d.ts

@@ -9,6 +9,14 @@ declare const DeduplicationRepository_base: Context.TagClass<DeduplicationReposi
     readonly hashesExist: (contentHashes: readonly string[]) => Effect.Effect<Set<string>, DatabaseError>;
     /** Record a processed hash */
     readonly insertHash: (input: CreateProcessedHashInput) => Effect.Effect<ProcessedHash, DatabaseError>;
+    /**
+     * Atomically try to insert a hash, returning whether it was actually inserted.
+     * Uses INSERT OR IGNORE to handle race conditions safely.
+     * Returns { inserted: true } if this was a new hash, { inserted: false } if it already existed.
+     */
+    readonly tryInsertHash: (input: CreateProcessedHashInput) => Effect.Effect<{
+        inserted: boolean;
+    }, DatabaseError>;
     /** Record multiple hashes at once (batch operation) */
     readonly insertHashes: (inputs: readonly CreateProcessedHashInput[]) => Effect.Effect<number, DatabaseError>;
     /** Find a hash record by content hash */
@@ -24,7 +32,7 @@ declare const DeduplicationRepository_base: Context.TagClass<DeduplicationReposi
     /** Update or create progress for a file */
     readonly upsertFileProgress: (input: UpsertFileProgressInput) => Effect.Effect<FileProgress, DatabaseError>;
     /** Delete progress for a file */
-    readonly deleteFileProgress: (filePath: string) => Effect.Effect<void, DatabaseError>;
+    readonly deleteFileProgress: (filePath: string) => Effect.Effect<number, DatabaseError>;
     /** Get all tracked files */
     readonly getAllFileProgress: () => Effect.Effect<readonly FileProgress[], DatabaseError>;
     /** Count tracked files */

package/dist/repo/deduplication-repo.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"deduplication-repo.d.ts","sourceRoot":"","sources":["../../src/repo/deduplication-repo.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,QAAQ,CAAA;AAC/C,OAAO,EAAE,YAAY,EAAE,MAAM,UAAU,CAAA;AACvC,OAAO,EAAE,aAAa,EAAoB,MAAM,cAAc,CAAA;AAE9D,OAAO,KAAK,EACV,aAAa,EAEb,wBAAwB,EACxB,YAAY,EAEZ,uBAAuB,EACxB,MAAM,yBAAyB,CAAA;;IAO5B,6CAA6C;yBACxB,CAAC,WAAW,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,OAAO,EAAE,aAAa,CAAC;IAEnF,sDAAsD;0BAChC,CAAC,aAAa,EAAE,SAAS,MAAM,EAAE,KAAK,MAAM,CAAC,MAAM,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,aAAa,CAAC;IAErG,8BAA8B;yBACT,CAAC,KAAK,EAAE,wBAAwB,KAAK,MAAM,CAAC,MAAM,CAAC,aAAa,EAAE,aAAa,CAAC;IAErG;;;;OAIG;4BACqB,CAAC,KAAK,EAAE,wBAAwB,KAAK,MAAM,CAAC,MAAM,CAAC;QAAE,QAAQ,EAAE,OAAO,CAAA;KAAE,EAAE,aAAa,CAAC;IAEhH,uDAAuD;2BAChC,CAAC,MAAM,EAAE,SAAS,wBAAwB,EAAE,KAAK,MAAM,CAAC,MAAM,CAAC,MAAM,EAAE,aAAa,CAAC;IAE5G,yCAAyC;yBACpB,CAAC,WAAW,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,aAAa,GAAG,IAAI,EAAE,aAAa,CAAC;IAEhG,0CAA0C;0BACpB,MAAM,MAAM,CAAC,MAAM,CAAC,MAAM,EAAE,aAAa,CAAC;IAEhE,qCAAqC;+BACV,CAAC,QAAQ,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,SAAS,aAAa,EAAE,EAAE,aAAa,CAAC;IAEvG,sDAAsD;kCACxB,CAAC,QAAQ,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,MAAM,EAAE,aAAa,CAAC;IAIxF,8BAA8B;8BACJ,CAAC,QAAQ,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,YAAY,GAAG,IAAI,EAAE,aAAa,CAAC;IAEjG,2CAA2C;iCACd,CAAC,KAAK,EAAE,uBAAuB,KAAK,MAAM,CAAC,MAAM,CAAC,YAAY,EAAE,aAAa,CAAC;IAE3G,iCAAiC;iCACJ,CAAC,QAAQ,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,MAAM,EAAE,aAAa,CAAC;IAEvF,4BAA4B;iCACC,MAAM,MAAM,CAAC,MAAM,CAAC,SAAS,YAAY,EAAE,EAAE,aAAa,CAAC;IAExF,0BAA0B;yBACL,MAAM,MAAM,CAAC,MAAM,CAAC,MAAM,EAAE,aAAa,CAAC;;AAnDnE,qBAAa,uBAAwB,SAAQ,4BAqD1C;CAAG;AAEN,eAAO,MAAM,2BAA2B,2DAsOvC,CAAA"}

package/dist/repo/deduplication-repo.js

@@ -1,6 +1,6 @@
 import { Context, Effect, Layer } from "effect";
 import { SqliteClient } from "../db.js";
-import { DatabaseError } from "../errors.js";
+import { DatabaseError, EntityFetchError } from "../errors.js";
 import { rowToProcessedHash, rowToFileProgress } from "../mappers/deduplication.js";
 export class DeduplicationRepository extends Context.Tag("DeduplicationRepository")() {
 }
@@ -11,7 +11,7 @@ export const DeduplicationRepositoryLive = Layer.effect(DeduplicationRepository,
         hashExists: (contentHash) => Effect.try({
             try: () => {
                 const row = db.prepare("SELECT 1 FROM processed_hashes WHERE content_hash = ? LIMIT 1").get(contentHash);
-                return row !== undefined;
+                return row != null;
             },
             catch: (cause) => new DatabaseError({ cause })
         }),
@@ -33,10 +33,30 @@ export const DeduplicationRepositoryLive = Layer.effect(DeduplicationRepository,
               VALUES (?, ?, ?)
             `).run(input.contentHash, input.sourceFile, input.sourceLine);
                 const row = db.prepare("SELECT * FROM processed_hashes WHERE content_hash = ?").get(input.contentHash);
+                if (!row) {
+                    throw new EntityFetchError({
+                        entity: "processed_hash",
+                        id: input.contentHash,
+                        operation: "insert"
+                    });
+                }
                 return rowToProcessedHash(row);
             },
             catch: (cause) => new DatabaseError({ cause })
         }),
+        tryInsertHash: (input) => Effect.try({
+            try: () => {
+                // Use INSERT OR IGNORE to atomically handle duplicates
+                // This is race-condition safe: if two processes try to insert
+                // the same hash concurrently, one succeeds and the other gets changes=0
+                const result = db.prepare(`
+              INSERT OR IGNORE INTO processed_hashes (content_hash, source_file, source_line)
+              VALUES (?, ?, ?)
+            `).run(input.contentHash, input.sourceFile, input.sourceLine);
+                return { inserted: result.changes > 0 };
+            },
+            catch: (cause) => new DatabaseError({ cause })
+        }),
         insertHashes: (inputs) => Effect.try({
             try: () => {
                 if (inputs.length === 0)
@@ -45,13 +65,22 @@ export const DeduplicationRepositoryLive = Layer.effect(DeduplicationRepository,
               INSERT OR IGNORE INTO processed_hashes (content_hash, source_file, source_line)
               VALUES (?, ?, ?)
             `);
-                let inserted = 0;
-                for (const input of inputs) {
-                    const result = stmt.run(input.contentHash, input.sourceFile, input.sourceLine);
-                    if (result.changes > 0)
-                        inserted++;
+                // Use a transaction for atomicity and performance
+                db.exec("BEGIN IMMEDIATE");
+                try {
+                    let inserted = 0;
+                    for (const input of inputs) {
+                        const result = stmt.run(input.contentHash, input.sourceFile, input.sourceLine);
+                        if (result.changes > 0)
+                            inserted++;
+                    }
+                    db.exec("COMMIT");
+                    return inserted;
+                }
+                catch (e) {
+                    db.exec("ROLLBACK");
+                    throw e;
                 }
-                return inserted;
             },
             catch: (cause) => new DatabaseError({ cause })
         }),
@@ -104,13 +133,21 @@ export const DeduplicationRepositoryLive = Layer.effect(DeduplicationRepository,
                 last_processed_at = datetime('now')
             `).run(input.filePath, input.lastLineProcessed, input.lastByteOffset, input.fileSize ?? null, input.fileChecksum ?? null);
                 const row = db.prepare("SELECT * FROM file_progress WHERE file_path = ?").get(input.filePath);
+                if (!row) {
+                    throw new EntityFetchError({
+                        entity: "file_progress",
+                        id: input.filePath,
+                        operation: "insert"
+                    });
+                }
                 return rowToFileProgress(row);
             },
             catch: (cause) => new DatabaseError({ cause })
         }),
         deleteFileProgress: (filePath) => Effect.try({
             try: () => {
-                db.prepare("DELETE FROM file_progress WHERE file_path = ?").run(filePath);
+                const result = db.prepare("DELETE FROM file_progress WHERE file_path = ?").run(filePath);
+                return result.changes;
             },
             catch: (cause) => new DatabaseError({ cause })
         }),

package/dist/repo/deduplication-repo.js.map

@@ -1 +1 @@
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package/dist/repo/dep-repo.d.ts

@@ -1,16 +1,40 @@
 import { Context, Effect, Layer } from "effect";
 import { SqliteClient } from "../db.js";
-import { DatabaseError } from "../errors.js";
+import { DatabaseError, DependencyNotFoundError } from "../errors.js";
 import type { TaskId, TaskDependency } from "@jamesaphoenix/tx-types";
+/**
+ * Result of atomic cycle-check-and-insert operation.
+ */
+export type InsertWithCycleCheckResult = {
+    readonly _tag: "inserted";
+} | {
+    readonly _tag: "wouldCycle";
+} | {
+    readonly _tag: "alreadyExists";
+};
 declare const DependencyRepository_base: Context.TagClass<DependencyRepository, "DependencyRepository", {
     readonly insert: (blockerId: string, blockedId: string) => Effect.Effect<void, DatabaseError>;
-    readonly remove: (blockerId: string, blockedId: string) => Effect.Effect<void, DatabaseError>;
+    readonly remove: (blockerId: string, blockedId: string) => Effect.Effect<void, DatabaseError | DependencyNotFoundError>;
     readonly getBlockerIds: (blockedId: string) => Effect.Effect<readonly TaskId[], DatabaseError>;
     readonly getBlockingIds: (blockerId: string) => Effect.Effect<readonly TaskId[], DatabaseError>;
     readonly getBlockerIdsForMany: (blockedIds: readonly string[]) => Effect.Effect<Map<string, readonly TaskId[]>, DatabaseError>;
     readonly getBlockingIdsForMany: (blockerIds: readonly string[]) => Effect.Effect<Map<string, readonly TaskId[]>, DatabaseError>;
     readonly hasPath: (fromId: string, toId: string) => Effect.Effect<boolean, DatabaseError>;
-    readonly getAll: () => Effect.Effect<readonly TaskDependency[], DatabaseError>;
+    readonly getAll: (limit?: number) => Effect.Effect<readonly TaskDependency[], DatabaseError>;
+    /**
+     * Remove all dependency edges where any of the given task IDs appear
+     * as either blocker_id or blocked_id. Used during cascade delete to
+     * explicitly clean up edges rather than relying solely on FK CASCADE.
+     */
+    readonly removeByTaskIds: (taskIds: readonly string[]) => Effect.Effect<void, DatabaseError>;
+    /**
+     * Atomically check for cycles and insert dependency in a single transaction.
+     * This prevents race conditions where two concurrent addBlocker calls could
+     * both pass cycle detection before either inserts.
+     *
+     * Uses BEGIN IMMEDIATE to acquire write lock before cycle check.
+     */
+    readonly insertWithCycleCheck: (blockerId: string, blockedId: string) => Effect.Effect<InsertWithCycleCheckResult, DatabaseError>;
 }>;
 export declare class DependencyRepository extends DependencyRepository_base {
 }

package/dist/repo/dep-repo.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"dep-repo.d.ts","sourceRoot":"","sources":["../../src/repo/dep-repo.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,QAAQ,CAAA;AAC/C,OAAO,EAAE,YAAY,EAAE,MAAM,UAAU,CAAA;AACvC,OAAO,EAAE,aAAa,EAAE,uBAAuB,EAA2B,MAAM,cAAc,CAAA;AAG9F,OAAO,KAAK,EAAE,MAAM,EAAE,cAAc,EAAiB,MAAM,yBAAyB,CAAA;AAYpF;;GAEG;AACH,MAAM,MAAM,0BAA0B,GAClC;IAAE,QAAQ,CAAC,IAAI,EAAE,UAAU,CAAA;CAAE,GAC7B;IAAE,QAAQ,CAAC,IAAI,EAAE,YAAY,CAAA;CAAE,GAC/B;IAAE,QAAQ,CAAC,IAAI,EAAE,eAAe,CAAA;CAAE,CAAA;;qBAKjB,CAAC,SAAS,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,IAAI,EAAE,aAAa,CAAC;qBAC5E,CAAC,SAAS,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,IAAI,EAAE,aAAa,GAAG,uBAAuB,CAAC;4BAC/F,CAAC,SAAS,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,SAAS,MAAM,EAAE,EAAE,aAAa,CAAC;6BACrE,CAAC,SAAS,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,SAAS,MAAM,EAAE,EAAE,aAAa,CAAC;mCAChE,CAAC,UAAU,EAAE,SAAS,MAAM,EAAE,KAAK,MAAM,CAAC,MAAM,CAAC,GAAG,CAAC,MAAM,EAAE,SAAS,MAAM,EAAE,CAAC,EAAE,aAAa,CAAC;oCAC9F,CAAC,UAAU,EAAE,SAAS,MAAM,EAAE,KAAK,MAAM,CAAC,MAAM,CAAC,GAAG,CAAC,MAAM,EAAE,SAAS,MAAM,EAAE,CAAC,EAAE,aAAa,CAAC;sBAC7G,CAAC,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,OAAO,EAAE,aAAa,CAAC;qBACxE,CAAC,KAAK,CAAC,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,SAAS,cAAc,EAAE,EAAE,aAAa,CAAC;IAC5F;;;;OAIG;8BACuB,CAAC,OAAO,EAAE,SAAS,MAAM,EAAE,KAAK,MAAM,CAAC,MAAM,CAAC,IAAI,EAAE,aAAa,CAAC;IAC5F;;;;;;OAMG;mCAC4B,CAAC,SAAS,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,0BAA0B,EAAE,aAAa,CAAC;;AAxBrI,qBAAa,oBAAqB,SAAQ,yBA0BvC;CAAG;AAEN,eAAO,MAAM,wBAAwB,wDAqRpC,CAAA"}

package/dist/repo/dep-repo.js

@@ -1,7 +1,16 @@
 import { Context, Effect, Layer } from "effect";
 import { SqliteClient } from "../db.js";
-import { DatabaseError } from "../errors.js";
+import { DatabaseError, DependencyNotFoundError, UnexpectedRowCountError } from "../errors.js";
 import { rowToDependency } from "../mappers/task.js";
+import { DEFAULT_QUERY_LIMIT } from "../utils/sql.js";
+// Shared frozen empty array to avoid allocating new arrays for IDs with no dependencies
+const EMPTY_TASK_IDS = Object.freeze([]);
+/**
+ * Maximum recursion depth for dependency graph traversal.
+ * Prevents unbounded recursive CTEs from hitting SQLite's internal
+ * 1000-level recursion limit on deep dependency chains.
+ */
+const MAX_DEPENDENCY_DEPTH = 100;
 export class DependencyRepository extends Context.Tag("DependencyRepository")() {
 }
 export const DependencyRepositoryLive = Layer.effect(DependencyRepository, Effect.gen(function* () {
@@ -9,15 +18,25 @@ export const DependencyRepositoryLive = Layer.effect(DependencyRepository, Effec
     return {
         insert: (blockerId, blockedId) => Effect.try({
             try: () => {
-                db.prepare("INSERT INTO task_dependencies (blocker_id, blocked_id, created_at) VALUES (?, ?, ?)").run(blockerId, blockedId, new Date().toISOString());
+                const result = db.prepare("INSERT INTO task_dependencies (blocker_id, blocked_id, created_at) VALUES (?, ?, ?)").run(blockerId, blockedId, new Date().toISOString());
+                if (result.changes !== 1) {
+                    throw new UnexpectedRowCountError({
+                        operation: "dependency insert",
+                        expected: 1,
+                        actual: result.changes
+                    });
+                }
             },
             catch: (cause) => new DatabaseError({ cause })
         }),
-        remove: (blockerId, blockedId) => Effect.try({
-            try: () => {
-                db.prepare("DELETE FROM task_dependencies WHERE blocker_id = ? AND blocked_id = ?").run(blockerId, blockedId);
-            },
-            catch: (cause) => new DatabaseError({ cause })
+        remove: (blockerId, blockedId) => Effect.gen(function* () {
+            const result = yield* Effect.try({
+                try: () => db.prepare("DELETE FROM task_dependencies WHERE blocker_id = ? AND blocked_id = ?").run(blockerId, blockedId),
+                catch: (cause) => new DatabaseError({ cause })
+            });
+            if (result.changes === 0) {
+                yield* Effect.fail(new DependencyNotFoundError({ blockerId, blockedId }));
+            }
         }),
         getBlockerIds: (blockedId) => Effect.try({
             try: () => {
@@ -40,14 +59,20 @@ export const DependencyRepositoryLive = Layer.effect(DependencyRepository, Effec
                     return result;
                 const placeholders = blockedIds.map(() => "?").join(",");
                 const rows = db.prepare(`SELECT blocked_id, blocker_id FROM task_dependencies WHERE blocked_id IN (${placeholders})`).all(...blockedIds);
-                // Initialize all requested IDs with empty arrays
-                for (const id of blockedIds) {
-                    result.set(id, []);
-                }
-                // Group by blocked_id
+                // Group rows by blocked_id in a temporary mutable map
+                const grouped = new Map();
                 for (const row of rows) {
-                    const existing = result.get(row.blocked_id) ?? [];
-                    result.set(row.blocked_id, [...existing, row.blocker_id]);
+                    const existing = grouped.get(row.blocked_id);
+                    if (existing) {
+                        existing.push(row.blocker_id);
+                    }
+                    else {
+                        grouped.set(row.blocked_id, [row.blocker_id]);
+                    }
+                }
+                // Populate result: use grouped array or shared empty array
+                for (const id of blockedIds) {
+                    result.set(id, grouped.get(id) ?? EMPTY_TASK_IDS);
                 }
                 return result;
             },
@@ -60,44 +85,146 @@ export const DependencyRepositoryLive = Layer.effect(DependencyRepository, Effec
                     return result;
                 const placeholders = blockerIds.map(() => "?").join(",");
                 const rows = db.prepare(`SELECT blocker_id, blocked_id FROM task_dependencies WHERE blocker_id IN (${placeholders})`).all(...blockerIds);
-                // Initialize all requested IDs with empty arrays
-                for (const id of blockerIds) {
-                    result.set(id, []);
-                }
-                // Group by blocker_id
+                // Group rows by blocker_id in a temporary mutable map
+                const grouped = new Map();
                 for (const row of rows) {
-                    const existing = result.get(row.blocker_id) ?? [];
-                    result.set(row.blocker_id, [...existing, row.blocked_id]);
+                    const existing = grouped.get(row.blocker_id);
+                    if (existing) {
+                        existing.push(row.blocked_id);
+                    }
+                    else {
+                        grouped.set(row.blocker_id, [row.blocked_id]);
+                    }
+                }
+                // Populate result: use grouped array or shared empty array
+                for (const id of blockerIds) {
+                    result.set(id, grouped.get(id) ?? EMPTY_TASK_IDS);
                 }
                 return result;
             },
             catch: (cause) => new DatabaseError({ cause })
         }),
-        // BFS cycle detection: can we reach toId by following blocker chains from fromId?
-        hasPath: (fromId, toId) => Effect.try({
+        // Cycle detection using recursive CTE: can we reach toId by following blocker chains from fromId?
+        // Uses UNION (not UNION ALL) to automatically prevent infinite recursion on existing cycles
+        // Depth-limited to MAX_DEPENDENCY_DEPTH to prevent hitting SQLite's internal 1000-level limit
+        hasPath: (fromId, toId) => Effect.gen(function* () {
+            // Special case: same ID
+            if (fromId === toId)
+                return true;
+            // Recursive CTE performs BFS in a single query
+            // UNION deduplicates visited nodes, preventing infinite loops
+            // depth tracking prevents unbounded recursion on deep chains
+            const result = yield* Effect.try({
+                try: () => db.prepare(`
+                WITH RECURSIVE reachable(id, depth) AS (
+                  -- Base case: direct blockers of fromId (depth 1)
+                  SELECT blocker_id, 1 FROM task_dependencies WHERE blocked_id = ?
+                  UNION
+                  -- Recursive case: follow blocker chain, bounded by depth limit
+                  SELECT d.blocker_id, r.depth + 1
+                  FROM task_dependencies d
+                  JOIN reachable r ON d.blocked_id = r.id
+                  WHERE r.depth < ?
+                )
+                SELECT
+                  MAX(CASE WHEN id = ? THEN 1 ELSE 0 END) AS found,
+                  MAX(depth) AS max_depth
+                FROM reachable
+              `).get(fromId, MAX_DEPENDENCY_DEPTH, toId),
+                catch: (cause) => new DatabaseError({ cause })
+            });
+            const pathFound = result?.found === 1;
+            const depthLimitHit = result?.max_depth != null && result.max_depth >= MAX_DEPENDENCY_DEPTH;
+            if (depthLimitHit) {
+                yield* Effect.logWarning(`Dependency depth limit (${MAX_DEPENDENCY_DEPTH}) reached checking path from ${fromId} to ${toId}. Graph may have unexplored deeper chains.`);
+            }
+            return pathFound;
+        }),
+        getAll: (limit) => Effect.try({
             try: () => {
-                const visited = new Set();
-                const queue = [fromId];
-                while (queue.length > 0) {
-                    const current = queue.shift();
-                    if (current === toId)
-                        return true;
-                    if (visited.has(current))
-                        continue;
-                    visited.add(current);
-                    const rows = db.prepare("SELECT blocker_id FROM task_dependencies WHERE blocked_id = ?").all(current);
-                    queue.push(...rows.map(r => r.blocker_id));
-                }
-                return false;
+                const rows = db.prepare("SELECT blocker_id, blocked_id, created_at FROM task_dependencies LIMIT ?").all(limit ?? DEFAULT_QUERY_LIMIT);
+                return rows.map(rowToDependency);
             },
             catch: (cause) => new DatabaseError({ cause })
         }),
-        getAll: () => Effect.try({
+        removeByTaskIds: (taskIds) => Effect.try({
             try: () => {
-                const rows = db.prepare("SELECT blocker_id, blocked_id, created_at FROM task_dependencies").all();
-                return rows.map(rowToDependency);
+                if (taskIds.length === 0)
+                    return;
+                const placeholders = taskIds.map(() => "?").join(",");
+                db.prepare(`DELETE FROM task_dependencies WHERE blocker_id IN (${placeholders}) OR blocked_id IN (${placeholders})`).run(...taskIds, ...taskIds);
             },
             catch: (cause) => new DatabaseError({ cause })
+        }),
+        insertWithCycleCheck: (blockerId, blockedId) => Effect.gen(function* () {
+            const txResult = yield* Effect.try({
+                try: () => {
+                    // BEGIN IMMEDIATE acquires write lock immediately, preventing other writers
+                    // from modifying the dependency graph until we commit/rollback
+                    db.exec("BEGIN IMMEDIATE");
+                    try {
+                        // Special case: same ID always indicates a cycle
+                        if (blockerId === blockedId) {
+                            db.exec("ROLLBACK");
+                            return { _tag: "wouldCycle", depthLimitHit: false };
+                        }
+                        // Check if dependency already exists (idempotent)
+                        const existing = db.prepare("SELECT 1 FROM task_dependencies WHERE blocker_id = ? AND blocked_id = ? LIMIT 1").get(blockerId, blockedId);
+                        if (existing != null) {
+                            db.exec("ROLLBACK");
+                            return { _tag: "alreadyExists", depthLimitHit: false };
+                        }
+                        // Check if adding this dependency would create a cycle
+                        // Uses depth-limited recursive CTE to detect if blockedId can already reach blockerId
+                        const cycleCheck = db.prepare(`
+                  WITH RECURSIVE reachable(id, depth) AS (
+                    SELECT blocker_id, 1 FROM task_dependencies WHERE blocked_id = ?
+                    UNION
+                    SELECT d.blocker_id, r.depth + 1
+                    FROM task_dependencies d
+                    JOIN reachable r ON d.blocked_id = r.id
+                    WHERE r.depth < ?
+                  )
+                  SELECT
+                    MAX(CASE WHEN id = ? THEN 1 ELSE 0 END) AS found,
+                    MAX(depth) AS max_depth
+                  FROM reachable
+                `).get(blockerId, MAX_DEPENDENCY_DEPTH, blockedId);
+                        const depthLimitHit = cycleCheck?.max_depth != null && cycleCheck.max_depth >= MAX_DEPENDENCY_DEPTH;
+                        if (cycleCheck?.found === 1) {
+                            db.exec("ROLLBACK");
+                            return { _tag: "wouldCycle", depthLimitHit };
+                        }
+                        // No cycle detected - safe to insert
+                        const result = db.prepare("INSERT INTO task_dependencies (blocker_id, blocked_id, created_at) VALUES (?, ?, ?)").run(blockerId, blockedId, new Date().toISOString());
+                        if (result.changes !== 1) {
+                            db.exec("ROLLBACK");
+                            throw new UnexpectedRowCountError({
+                                operation: "dependency insert (with cycle check)",
+                                expected: 1,
+                                actual: result.changes
+                            });
+                        }
+                        db.exec("COMMIT");
+                        return { _tag: "inserted", depthLimitHit };
+                    }
+                    catch (e) {
+                        // Ensure rollback on any error
+                        try {
+                            db.exec("ROLLBACK");
+                        }
+                        catch {
+                            // Ignore rollback errors (transaction may already be rolled back)
+                        }
+                        throw e;
+                    }
+                },
+                catch: (cause) => new DatabaseError({ cause })
+            });
+            if (txResult.depthLimitHit) {
+                yield* Effect.logWarning(`Dependency depth limit (${MAX_DEPENDENCY_DEPTH}) reached during cycle check for ${blockerId} → ${blockedId}. Insert proceeded but deeper cycles may exist.`);
+            }
+            return { _tag: txResult._tag };
         })
     };
 }));

package/dist/repo/dep-repo.js.map

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