@jamesaphoenix/tx-core 0.4.2 → 0.4.3

package/dist/repo/file-learning-repo.js

@@ -1,7 +1,8 @@
 import { Context, Effect, Layer } from "effect";
 import { SqliteClient } from "../db.js";
-import { DatabaseError } from "../errors.js";
+import { DatabaseError, EntityFetchError, FileLearningNotFoundError } from "../errors.js";
 import { rowToFileLearning, matchesPattern } from "../mappers/file-learning.js";
+import { DEFAULT_QUERY_LIMIT } from "../utils/sql.js";
 export class FileLearningRepository extends Context.Tag("FileLearningRepository")() {
 }
 export const FileLearningRepositoryLive = Layer.effect(FileLearningRepository, Effect.gen(function* () {
@@ -14,6 +15,13 @@ export const FileLearningRepositoryLive = Layer.effect(FileLearningRepository, E
                VALUES (?, ?, ?, ?)`).run(input.filePattern, input.note, input.taskId ?? null, now);
                 // Fetch the inserted row
                 const row = db.prepare("SELECT * FROM file_learnings WHERE id = ?").get(result.lastInsertRowid);
+                if (!row) {
+                    throw new EntityFetchError({
+                        entity: "file_learning",
+                        id: result.lastInsertRowid,
+                        operation: "insert"
+                    });
+                }
                 return rowToFileLearning(row);
             },
             catch: (cause) => new DatabaseError({ cause })
@@ -25,9 +33,9 @@ export const FileLearningRepositoryLive = Layer.effect(FileLearningRepository, E
             },
             catch: (cause) => new DatabaseError({ cause })
         }),
-        findAll: () => Effect.try({
+        findAll: (limit) => Effect.try({
             try: () => {
-                const rows = db.prepare(`SELECT * FROM file_learnings ORDER BY created_at DESC`).all();
+                const rows = db.prepare(`SELECT * FROM file_learnings ORDER BY created_at DESC LIMIT ?`).all(limit ?? DEFAULT_QUERY_LIMIT);
                 return rows.map(rowToFileLearning);
             },
             catch: (cause) => new DatabaseError({ cause })
@@ -42,11 +50,14 @@ export const FileLearningRepositoryLive = Layer.effect(FileLearningRepository, E
             },
             catch: (cause) => new DatabaseError({ cause })
         }),
-        remove: (id) => Effect.try({
-            try: () => {
-                db.prepare("DELETE FROM file_learnings WHERE id = ?").run(id);
-            },
-            catch: (cause) => new DatabaseError({ cause })
+        remove: (id) => Effect.gen(function* () {
+            const result = yield* Effect.try({
+                try: () => db.prepare("DELETE FROM file_learnings WHERE id = ?").run(id),
+                catch: (cause) => new DatabaseError({ cause })
+            });
+            if (result.changes === 0) {
+                yield* Effect.fail(new FileLearningNotFoundError({ id }));
+            }
         }),
         count: () => Effect.try({
             try: () => {

package/dist/repo/file-learning-repo.js.map

@@ -1 +1 @@
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package/dist/repo/index.d.ts

@@ -7,12 +7,10 @@ export { LearningRepository, LearningRepositoryLive, type BM25Result } from "./l
 export { FileLearningRepository, FileLearningRepositoryLive } from "./file-learning-repo.js";
 export { AttemptRepository, AttemptRepositoryLive } from "./attempt-repo.js";
 export { RunRepository, RunRepositoryLive } from "./run-repo.js";
-export { AnchorRepository, AnchorRepositoryLive } from "./anchor-repo.js";
-export { EdgeRepository, EdgeRepositoryLive } from "./edge-repo.js";
-export { DeduplicationRepository, DeduplicationRepositoryLive } from "./deduplication-repo.js";
-export { CandidateRepository, CandidateRepositoryLive } from "./candidate-repo.js";
-export { TrackedProjectRepository, TrackedProjectRepositoryLive } from "./tracked-project-repo.js";
 export { WorkerRepository, WorkerRepositoryLive } from "./worker-repo.js";
-export { ClaimRepository, ClaimRepositoryLive } from "./claim-repo.js";
+export { ClaimRepository, ClaimRepositoryLive, type AtomicInsertResult, type AtomicRenewResult } from "./claim-repo.js";
 export { OrchestratorStateRepository, OrchestratorStateRepositoryLive, type OrchestratorStateUpdate } from "./orchestrator-state-repo.js";
+export { DeduplicationRepository, DeduplicationRepositoryLive } from "./deduplication-repo.js";
+export { TrackedProjectRepository, TrackedProjectRepositoryLive } from "./tracked-project-repo.js";
+export { DocRepository, DocRepositoryLive, type InsertDocInput, type UpdateDocInput } from "./doc-repo.js";
 //# sourceMappingURL=index.d.ts.map

package/dist/repo/index.d.ts.map

@@ -1 +1 @@
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package/dist/repo/index.js

@@ -7,12 +7,10 @@ export { LearningRepository, LearningRepositoryLive } from "./learning-repo.js";
 export { FileLearningRepository, FileLearningRepositoryLive } from "./file-learning-repo.js";
 export { AttemptRepository, AttemptRepositoryLive } from "./attempt-repo.js";
 export { RunRepository, RunRepositoryLive } from "./run-repo.js";
-export { AnchorRepository, AnchorRepositoryLive } from "./anchor-repo.js";
-export { EdgeRepository, EdgeRepositoryLive } from "./edge-repo.js";
-export { DeduplicationRepository, DeduplicationRepositoryLive } from "./deduplication-repo.js";
-export { CandidateRepository, CandidateRepositoryLive } from "./candidate-repo.js";
-export { TrackedProjectRepository, TrackedProjectRepositoryLive } from "./tracked-project-repo.js";
 export { WorkerRepository, WorkerRepositoryLive } from "./worker-repo.js";
 export { ClaimRepository, ClaimRepositoryLive } from "./claim-repo.js";
 export { OrchestratorStateRepository, OrchestratorStateRepositoryLive } from "./orchestrator-state-repo.js";
+export { DeduplicationRepository, DeduplicationRepositoryLive } from "./deduplication-repo.js";
+export { TrackedProjectRepository, TrackedProjectRepositoryLive } from "./tracked-project-repo.js";
+export { DocRepository, DocRepositoryLive } from "./doc-repo.js";
 //# sourceMappingURL=index.js.map

package/dist/repo/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/repo/index.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,cAAc,EAAE,kBAAkB,EAAE,MAAM,gBAAgB,CAAA;AACnE,OAAO,EAAE,oBAAoB,EAAE,wBAAwB,EAAE,MAAM,eAAe,CAAA;AAC9E,OAAO,EAAE,kBAAkB,EAAE,sBAAsB,EAAmB,MAAM,oBAAoB,CAAA;AAChG,OAAO,EAAE,sBAAsB,EAAE,0BAA0B,EAAE,MAAM,yBAAyB,CAAA;AAC5F,OAAO,EAAE,iBAAiB,EAAE,qBAAqB,EAAE,MAAM,mBAAmB,CAAA;AAC5E,OAAO,EAAE,aAAa,EAAE,iBAAiB,EAAE,MAAM,eAAe,CAAA;AAChE,OAAO,EAAE,gBAAgB,EAAE,oBAAoB,EAAE,MAAM,kBAAkB,CAAA;AACzE,OAAO,EAAE,eAAe,EAAE,mBAAmB,EAAmD,MAAM,iBAAiB,CAAA;AACvH,OAAO,EAAE,2BAA2B,EAAE,+BAA+B,EAAgC,MAAM,8BAA8B,CAAA;AACzI,OAAO,EAAE,uBAAuB,EAAE,2BAA2B,EAAE,MAAM,yBAAyB,CAAA;AAC9F,OAAO,EAAE,wBAAwB,EAAE,4BAA4B,EAAE,MAAM,2BAA2B,CAAA;AAClG,OAAO,EAAE,aAAa,EAAE,iBAAiB,EAA4C,MAAM,eAAe,CAAA"}

package/dist/repo/learning-repo.d.ts

@@ -1,6 +1,6 @@
 import { Context, Effect, Layer } from "effect";
 import { SqliteClient } from "../db.js";
-import { DatabaseError } from "../errors.js";
+import { DatabaseError, LearningNotFoundError } from "../errors.js";
 import type { Learning, CreateLearningInput } from "@jamesaphoenix/tx-types";
 /** Scored learning result from BM25 search */
 export interface BM25Result {
@@ -10,8 +10,14 @@ export interface BM25Result {
 declare const LearningRepository_base: Context.TagClass<LearningRepository, "LearningRepository", {
     readonly insert: (input: CreateLearningInput) => Effect.Effect<Learning, DatabaseError>;
     readonly findById: (id: number) => Effect.Effect<Learning | null, DatabaseError>;
-    readonly findAll: () => Effect.Effect<readonly Learning[], DatabaseError>;
+    readonly findAll: (limit?: number) => Effect.Effect<readonly Learning[], DatabaseError>;
+    /** Find learnings with pagination (cursor-based using id for stability) */
+    readonly findPaginated: (limit: number, afterId?: number) => Effect.Effect<readonly Learning[], DatabaseError>;
+    /** Find learnings without embeddings with pagination (for batch embedding) */
+    readonly findWithoutEmbeddingPaginated: (limit: number, afterId?: number) => Effect.Effect<readonly Learning[], DatabaseError>;
     readonly findRecent: (limit: number) => Effect.Effect<readonly Learning[], DatabaseError>;
+    /** Find recent learnings without loading embedding data (for listing/serialization) */
+    readonly findRecentWithoutEmbedding: (limit: number) => Effect.Effect<readonly Learning[], DatabaseError>;
     readonly bm25Search: (query: string, limit: number) => Effect.Effect<readonly BM25Result[], DatabaseError>;
     /** Find learnings that have embeddings (for vector search) */
     readonly findWithEmbeddings: (limit: number) => Effect.Effect<readonly Learning[], DatabaseError>;
@@ -19,9 +25,10 @@ declare const LearningRepository_base: Context.TagClass<LearningRepository, "Lea
     readonly incrementUsageMany: (ids: readonly number[]) => Effect.Effect<void, DatabaseError>;
     readonly updateOutcomeScore: (id: number, score: number) => Effect.Effect<void, DatabaseError>;
     readonly updateEmbedding: (id: number, embedding: Float32Array) => Effect.Effect<void, DatabaseError>;
-    readonly remove: (id: number) => Effect.Effect<void, DatabaseError>;
+    readonly remove: (id: number) => Effect.Effect<void, DatabaseError | LearningNotFoundError>;
     readonly count: () => Effect.Effect<number, DatabaseError>;
     readonly countWithEmbeddings: () => Effect.Effect<number, DatabaseError>;
+    readonly countWithoutEmbeddings: () => Effect.Effect<number, DatabaseError>;
     readonly getConfig: (key: string) => Effect.Effect<string | null, DatabaseError>;
 }>;
 export declare class LearningRepository extends LearningRepository_base {

package/dist/repo/learning-repo.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"learning-repo.d.ts","sourceRoot":"","sources":["../../src/repo/learning-repo.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,QAAQ,CAAA;AAC/C,OAAO,EAAE,YAAY,EAAE,MAAM,UAAU,CAAA;AACvC,OAAO,EAAE,aAAa,EAAoB,qBAAqB,EAAE,MAAM,cAAc,CAAA;AAGrF,OAAO,KAAK,EAAE,QAAQ,EAAoC,mBAAmB,EAAE,MAAM,yBAAyB,CAAA;AAgB9G,8CAA8C;AAC9C,MAAM,WAAW,UAAU;IACzB,QAAQ,EAAE,QAAQ,CAAA;IAClB,KAAK,EAAE,MAAM,CAAA;CACd;;qBAKoB,CAAC,KAAK,EAAE,mBAAmB,KAAK,MAAM,CAAC,MAAM,CAAC,QAAQ,EAAE,aAAa,CAAC;uBACpE,CAAC,EAAE,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,QAAQ,GAAG,IAAI,EAAE,aAAa,CAAC;sBAC9D,CAAC,KAAK,CAAC,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,SAAS,QAAQ,EAAE,EAAE,aAAa,CAAC;IACvF,2EAA2E;4BACnD,CAAC,KAAK,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,SAAS,QAAQ,EAAE,EAAE,aAAa,CAAC;IAC9G,8EAA8E;4CACtC,CAAC,KAAK,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,SAAS,QAAQ,EAAE,EAAE,aAAa,CAAC;yBACzG,CAAC,KAAK,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,SAAS,QAAQ,EAAE,EAAE,aAAa,CAAC;IACzF,uFAAuF;yCAClD,CAAC,KAAK,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,SAAS,QAAQ,EAAE,EAAE,aAAa,CAAC;yBACpF,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,SAAS,UAAU,EAAE,EAAE,aAAa,CAAC;IAC1G,8DAA8D;iCACjC,CAAC,KAAK,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,SAAS,QAAQ,EAAE,EAAE,aAAa,CAAC;6BACxE,CAAC,EAAE,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,IAAI,EAAE,aAAa,CAAC;iCAC9C,CAAC,GAAG,EAAE,SAAS,MAAM,EAAE,KAAK,MAAM,CAAC,MAAM,CAAC,IAAI,EAAE,aAAa,CAAC;iCAC9D,CAAC,EAAE,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,IAAI,EAAE,aAAa,CAAC;8BACpE,CAAC,EAAE,EAAE,MAAM,EAAE,SAAS,EAAE,YAAY,KAAK,MAAM,CAAC,MAAM,CAAC,IAAI,EAAE,aAAa,CAAC;qBACpF,CAAC,EAAE,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,IAAI,EAAE,aAAa,GAAG,qBAAqB,CAAC;oBAC3E,MAAM,MAAM,CAAC,MAAM,CAAC,MAAM,EAAE,aAAa,CAAC;kCAC5B,MAAM,MAAM,CAAC,MAAM,CAAC,MAAM,EAAE,aAAa,CAAC;qCACvC,MAAM,MAAM,CAAC,MAAM,CAAC,MAAM,EAAE,aAAa,CAAC;wBACvD,CAAC,GAAG,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,MAAM,GAAG,IAAI,EAAE,aAAa,CAAC;;AAxBpF,qBAAa,kBAAmB,SAAQ,uBA0BrC;CAAG;AA0CN,eAAO,MAAM,sBAAsB,sDAgPlC,CAAA"}

package/dist/repo/learning-repo.js

@@ -1,7 +1,20 @@
 import { Context, Effect, Layer } from "effect";
 import { SqliteClient } from "../db.js";
-import { DatabaseError } from "../errors.js";
-import { rowToLearning, float32ArrayToBuffer } from "../mappers/learning.js";
+import { DatabaseError, EntityFetchError, LearningNotFoundError } from "../errors.js";
+import { rowToLearning, rowToLearningWithoutEmbedding, float32ArrayToBuffer } from "../mappers/learning.js";
+import { DEFAULT_QUERY_LIMIT } from "../utils/sql.js";
+/**
+ * All learning columns EXCEPT embedding.
+ * Used by queries where embedding data is discarded (BM25 search, listing, serialization).
+ * Avoids loading ~6KB Float32Array per learning that would be immediately GC'd.
+ */
+const COLS_NO_EMBEDDING = "id, content, source_type, source_ref, created_at, keywords, category, usage_count, last_used_at, outcome_score";
+/**
+ * Same columns but table-qualified with `l.` prefix.
+ * Required for JOINs (e.g., with learnings_fts) where `content`, `keywords`, and
+ * `category` are ambiguous since both tables define them.
+ */
+const COLS_NO_EMBEDDING_QUALIFIED = "l.id, l.content, l.source_type, l.source_ref, l.created_at, l.keywords, l.category, l.usage_count, l.last_used_at, l.outcome_score";
 export class LearningRepository extends Context.Tag("LearningRepository")() {
 }
 /**
@@ -47,6 +60,13 @@ export const LearningRepositoryLive = Layer.effect(LearningRepository, Effect.ge
                VALUES (?, ?, ?, ?, ?, ?)`).run(input.content, input.sourceType ?? "manual", input.sourceRef ?? null, now, input.keywords ? JSON.stringify(input.keywords) : null, input.category ?? null);
                 // Fetch the inserted row
                 const row = db.prepare("SELECT * FROM learnings WHERE id = ?").get(result.lastInsertRowid);
+                if (!row) {
+                    throw new EntityFetchError({
+                        entity: "learning",
+                        id: result.lastInsertRowid,
+                        operation: "insert"
+                    });
+                }
                 return rowToLearning(row);
             },
             catch: (cause) => new DatabaseError({ cause })
@@ -58,9 +78,27 @@ export const LearningRepositoryLive = Layer.effect(LearningRepository, Effect.ge
             },
             catch: (cause) => new DatabaseError({ cause })
         }),
-        findAll: () => Effect.try({
+        findAll: (limit) => Effect.try({
+            try: () => {
+                const rows = db.prepare(`SELECT * FROM learnings ORDER BY created_at ASC LIMIT ?`).all(limit ?? DEFAULT_QUERY_LIMIT);
+                return rows.map(rowToLearning);
+            },
+            catch: (cause) => new DatabaseError({ cause })
+        }),
+        findPaginated: (limit, afterId) => Effect.try({
+            try: () => {
+                const rows = afterId !== undefined
+                    ? db.prepare(`SELECT * FROM learnings WHERE id > ? ORDER BY id ASC LIMIT ?`).all(afterId, limit)
+                    : db.prepare(`SELECT * FROM learnings ORDER BY id ASC LIMIT ?`).all(limit);
+                return rows.map(rowToLearning);
+            },
+            catch: (cause) => new DatabaseError({ cause })
+        }),
+        findWithoutEmbeddingPaginated: (limit, afterId) => Effect.try({
             try: () => {
-                const rows = db.prepare(`SELECT * FROM learnings ORDER BY created_at ASC`).all();
+                const rows = afterId !== undefined
+                    ? db.prepare(`SELECT * FROM learnings WHERE embedding IS NULL AND id > ? ORDER BY id ASC LIMIT ?`).all(afterId, limit)
+                    : db.prepare(`SELECT * FROM learnings WHERE embedding IS NULL ORDER BY id ASC LIMIT ?`).all(limit);
                 return rows.map(rowToLearning);
             },
             catch: (cause) => new DatabaseError({ cause })
@@ -72,14 +110,23 @@ export const LearningRepositoryLive = Layer.effect(LearningRepository, Effect.ge
             },
             catch: (cause) => new DatabaseError({ cause })
         }),
+        findRecentWithoutEmbedding: (limit) => Effect.try({
+            try: () => {
+                const rows = db.prepare(`SELECT ${COLS_NO_EMBEDDING} FROM learnings ORDER BY created_at DESC LIMIT ?`).all(limit);
+                return rows.map(rowToLearningWithoutEmbedding);
+            },
+            catch: (cause) => new DatabaseError({ cause })
+        }),
         bm25Search: (query, limit) => Effect.try({
             try: () => {
                 const ftsQuery = buildFTS5Query(query);
                 if (!ftsQuery)
                     return [];
                 // FTS5 BM25 returns negative scores; lower (more negative) = better match
+                // Exclude embedding column — BM25 results never need it, and loading
+                // ~6KB Float32Array per row just to discard it wastes memory.
                 const rows = db.prepare(`
-              SELECT l.*, bm25(learnings_fts) as bm25_score
+              SELECT ${COLS_NO_EMBEDDING_QUALIFIED}, bm25(learnings_fts) as bm25_score
               FROM learnings l
               JOIN learnings_fts ON l.id = learnings_fts.rowid
               WHERE learnings_fts MATCH ?
@@ -92,7 +139,7 @@ export const LearningRepositoryLive = Layer.effect(LearningRepository, Effect.ge
                 // Best match gets 1.0, decays with rank
                 // Formula: score = 1.0 / (1 + rank * 0.1) gives 1.0, 0.91, 0.83, ...
                 return rows.map((row, rank) => ({
-                    learning: rowToLearning(row),
+                    learning: rowToLearningWithoutEmbedding(row),
                     score: 1.0 / (1 + rank * 0.1)
                 }));
             },
@@ -133,11 +180,14 @@ export const LearningRepositoryLive = Layer.effect(LearningRepository, Effect.ge
             },
             catch: (cause) => new DatabaseError({ cause })
         }),
-        remove: (id) => Effect.try({
-            try: () => {
-                db.prepare("DELETE FROM learnings WHERE id = ?").run(id);
-            },
-            catch: (cause) => new DatabaseError({ cause })
+        remove: (id) => Effect.gen(function* () {
+            const result = yield* Effect.try({
+                try: () => db.prepare("DELETE FROM learnings WHERE id = ?").run(id),
+                catch: (cause) => new DatabaseError({ cause })
+            });
+            if (result.changes === 0) {
+                yield* Effect.fail(new LearningNotFoundError({ id }));
+            }
         }),
         count: () => Effect.try({
             try: () => {
@@ -153,6 +203,13 @@ export const LearningRepositoryLive = Layer.effect(LearningRepository, Effect.ge
             },
             catch: (cause) => new DatabaseError({ cause })
         }),
+        countWithoutEmbeddings: () => Effect.try({
+            try: () => {
+                const result = db.prepare("SELECT COUNT(*) as cnt FROM learnings WHERE embedding IS NULL").get();
+                return result.cnt;
+            },
+            catch: (cause) => new DatabaseError({ cause })
+        }),
         getConfig: (key) => Effect.try({
             try: () => {
                 const row = db.prepare("SELECT value FROM learnings_config WHERE key = ?").get(key);

package/dist/repo/learning-repo.js.map

@@ -1 +1 @@
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package/dist/repo/orchestrator-state-repo.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"orchestrator-state-repo.d.ts","sourceRoot":"","sources":["../../src/repo/orchestrator-state-repo.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,QAAQ,CAAA;AAC/C,OAAO,EAAE,YAAY,EAAE,MAAM,UAAU,CAAA;AACvC,OAAO,EAAE,aAAa,EAAoB,MAAM,cAAc,CAAA;AAE9D,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,sBAAsB,CAAA;AAE7D;;GAEG;AACH,MAAM,MAAM,uBAAuB,GAAG,OAAO,CAAC,IAAI,CAAC,iBAAiB,EAAE,UAAU,CAAC,CAAC,GAAG;IACnF,QAAQ,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAA;CACnC,CAAA;;IAKG;;;OAGG;kBACW,MAAM,MAAM,CAAC,MAAM,CAAC,iBAAiB,EAAE,aAAa,CAAC;IACnE;;;OAGG;qBACc,CAAC,OAAO,EAAE,uBAAuB,KAAK,MAAM,CAAC,MAAM,CAAC,IAAI,EAAE,aAAa,CAAC;;AAZ7F,qBAAa,2BAA4B,SAAQ,gCAc9C;CAAG;AAiBN,eAAO,MAAM,+BAA+B,+DA8G3C,CAAA"}

package/dist/repo/orchestrator-state-repo.js

@@ -1,6 +1,6 @@
 import { Context, Effect, Layer } from "effect";
 import { SqliteClient } from "../db.js";
-import { DatabaseError } from "../errors.js";
+import { DatabaseError, EntityFetchError } from "../errors.js";
 import { rowToOrchestratorState } from "../mappers/orchestrator-state.js";
 export class OrchestratorStateRepository extends Context.Tag("OrchestratorStateRepository")() {
 }
@@ -36,6 +36,13 @@ export const OrchestratorStateRepositoryLive = Layer.effect(OrchestratorStateRep
                 // Ensure singleton exists before querying
                 ensureSingletonExists();
                 const row = db.prepare("SELECT * FROM orchestrator_state WHERE id = 1").get();
+                if (!row) {
+                    throw new EntityFetchError({
+                        entity: "orchestrator_state",
+                        id: 1,
+                        operation: "insert"
+                    });
+                }
                 return rowToOrchestratorState(row);
             },
             catch: (cause) => new DatabaseError({ cause })

package/dist/repo/orchestrator-state-repo.js.map

@@ -1 +1 @@
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+{"version":3,"file":"orchestrator-state-repo.js","sourceRoot":"","sources":["../../src/repo/orchestrator-state-repo.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,QAAQ,CAAA;AAC/C,OAAO,EAAE,YAAY,EAAE,MAAM,UAAU,CAAA;AACvC,OAAO,EAAE,aAAa,EAAE,gBAAgB,EAAE,MAAM,cAAc,CAAA;AAC9D,OAAO,EAAE,sBAAsB,EAA6B,MAAM,kCAAkC,CAAA;AAUpG,MAAM,OAAO,2BAA4B,SAAQ,OAAO,CAAC,GAAG,CAAC,6BAA6B,CAAC,EAcxF;CAAG;AAEN;;GAEG;AACH,MAAM,aAAa,GAAsB;IACvC,MAAM,EAAE,SAAS;IACjB,GAAG,EAAE,IAAI;IACT,SAAS,EAAE,IAAI;IACf,eAAe,EAAE,IAAI;IACrB,cAAc,EAAE,CAAC;IACjB,wBAAwB,EAAE,EAAE;IAC5B,wBAAwB,EAAE,EAAE;IAC5B,oBAAoB,EAAE,EAAE;IACxB,QAAQ,EAAE,EAAE;CACb,CAAA;AAED,MAAM,CAAC,MAAM,+BAA+B,GAAG,KAAK,CAAC,MAAM,CACzD,2BAA2B,EAC3B,MAAM,CAAC,GAAG,CAAC,QAAQ,CAAC;IAClB,MAAM,EAAE,GAAG,KAAK,CAAC,CAAC,YAAY,CAAA;IAE9B;;;OAGG;IACH,MAAM,qBAAqB,GAAG,GAAS,EAAE;QACvC,EAAE,CAAC,OAAO,CACR;;;+CAGuC,CACxC,CAAC,GAAG,CACH,aAAa,CAAC,MAAM,EACpB,aAAa,CAAC,GAAG,EACjB,aAAa,CAAC,SAAS,EAAE,WAAW,EAAE,IAAI,IAAI,EAC9C,aAAa,CAAC,eAAe,EAAE,WAAW,EAAE,IAAI,IAAI,EACpD,aAAa,CAAC,cAAc,EAC5B,aAAa,CAAC,wBAAwB,EACtC,aAAa,CAAC,wBAAwB,EACtC,aAAa,CAAC,oBAAoB,EAClC,IAAI,CAAC,SAAS,CAAC,aAAa,CAAC,QAAQ,CAAC,CACvC,CAAA;IACH,CAAC,CAAA;IAED,OAAO;QACL,GAAG,EAAE,GAAG,EAAE,CACR,MAAM,CAAC,GAAG,CAAC;YACT,GAAG,EAAE,GAAG,EAAE;gBACR,0CAA0C;gBAC1C,qBAAqB,EAAE,CAAA;gBAEvB,MAAM,GAAG,GAAG,EAAE,CAAC,OAAO,CACpB,+CAA+C,CAChD,CAAC,GAAG,EAAsC,CAAA;gBAC3C,IAAI,CAAC,GAAG,EAAE,CAAC;oBACT,MAAM,IAAI,gBAAgB,CAAC;wBACzB,MAAM,EAAE,oBAAoB;wBAC5B,EAAE,EAAE,CAAC;wBACL,SAAS,EAAE,QAAQ;qBACpB,CAAC,CAAA;gBACJ,CAAC;gBAED,OAAO,sBAAsB,CAAC,GAAG,CAAC,CAAA;YACpC,CAAC;YACD,KAAK,EAAE,CAAC,KAAK,EAAE,EAAE,CAAC,IAAI,aAAa,CAAC,EAAE,KAAK,EAAE,CAAC;SAC/C,CAAC;QAEJ,MAAM,EAAE,CAAC,OAAO,EAAE,EAAE,CAClB,MAAM,CAAC,GAAG,CAAC;YACT,GAAG,EAAE,GAAG,EAAE;gBACR,0CAA0C;gBAC1C,qBAAqB,EAAE,CAAA;gBAEvB,gDAAgD;gBAChD,MAAM,UAAU,GAAa,EAAE,CAAA;gBAC/B,MAAM,MAAM,GAAc,EAAE,CAAA;gBAE5B,IAAI,OAAO,CAAC,MAAM,KAAK,SAAS,EAAE,CAAC;oBACjC,UAAU,CAAC,IAAI,CAAC,YAAY,CAAC,CAAA;oBAC7B,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,CAAA;gBAC7B,CAAC;gBACD,IAAI,OAAO,CAAC,GAAG,KAAK,SAAS,EAAE,CAAC;oBAC9B,UAAU,CAAC,IAAI,CAAC,SAAS,CAAC,CAAA;oBAC1B,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAA;gBAC1B,CAAC;gBACD,IAAI,OAAO,CAAC,SAAS,KAAK,SAAS,EAAE,CAAC;oBACpC,UAAU,CAAC,IAAI,CAAC,gBAAgB,CAAC,CAAA;oBACjC,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,SAAS,EAAE,WAAW,EAAE,IAAI,IAAI,CAAC,CAAA;gBACvD,CAAC;gBACD,IAAI,OAAO,CAAC,eAAe,KAAK,SAAS,EAAE,CAAC;oBAC1C,UAAU,CAAC,IAAI,CAAC,uBAAuB,CAAC,CAAA;oBACxC,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,eAAe,EAAE,WAAW,EAAE,IAAI,IAAI,CAAC,CAAA;gBAC7D,CAAC;gBACD,IAAI,OAAO,CAAC,cAAc,KAAK,SAAS,EAAE,CAAC;oBACzC,UAAU,CAAC,IAAI,CAAC,sBAAsB,CAAC,CAAA;oBACvC,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,cAAc,CAAC,CAAA;gBACrC,CAAC;gBACD,IAAI,OAAO,CAAC,wBAAwB,KAAK,SAAS,EAAE,CAAC;oBACnD,UAAU,CAAC,IAAI,CAAC,gCAAgC,CAAC,CAAA;oBACjD,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,wBAAwB,CAAC,CAAA;gBAC/C,CAAC;gBACD,IAAI,OAAO,CAAC,wBAAwB,KAAK,SAAS,EAAE,CAAC;oBACnD,UAAU,CAAC,IAAI,CAAC,gCAAgC,CAAC,CAAA;oBACjD,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,wBAAwB,CAAC,CAAA;gBAC/C,CAAC;gBACD,IAAI,OAAO,CAAC,oBAAoB,KAAK,SAAS,EAAE,CAAC;oBAC/C,UAAU,CAAC,IAAI,CAAC,4BAA4B,CAAC,CAAA;oBAC7C,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,oBAAoB,CAAC,CAAA;gBAC3C,CAAC;gBACD,IAAI,OAAO,CAAC,QAAQ,KAAK,SAAS,EAAE,CAAC;oBACnC,UAAU,CAAC,IAAI,CAAC,cAAc,CAAC,CAAA;oBAC/B,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,QAAQ,CAAC,CAAC,CAAA;gBAC/C,CAAC;gBAED,gDAAgD;gBAChD,IAAI,UAAU,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;oBAC1B,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,eAAe;oBAC9B,EAAE,CAAC,OAAO,CACR,iCAAiC,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC,eAAe,CACtE,CAAC,GAAG,CAAC,GAAG,MAAM,CAAC,CAAA;gBAClB,CAAC;YACH,CAAC;YACD,KAAK,EAAE,CAAC,KAAK,EAAE,EAAE,CAAC,IAAI,aAAa,CAAC,EAAE,KAAK,EAAE,CAAC;SAC/C,CAAC;KACL,CAAA;AACH,CAAC,CAAC,CACH,CAAA"}

package/dist/repo/run-repo.d.ts

@@ -1,6 +1,6 @@
 import { Context, Effect, Layer } from "effect";
 import { SqliteClient } from "../db.js";
-import { DatabaseError } from "../errors.js";
+import { DatabaseError, RunNotFoundError } from "../errors.js";
 import type { Run, RunId, RunStatus, CreateRunInput, UpdateRunInput } from "@jamesaphoenix/tx-types";
 declare const RunRepository_base: Context.TagClass<RunRepository, "RunRepository", {
     /** Create a new run record */
@@ -16,9 +16,9 @@ declare const RunRepository_base: Context.TagClass<RunRepository, "RunRepository
     /** Update a run */
     readonly update: (id: RunId, input: UpdateRunInput) => Effect.Effect<void, DatabaseError>;
     /** Mark a run as completed */
-    readonly complete: (id: RunId, exitCode: number, summary?: string) => Effect.Effect<void, DatabaseError>;
+    readonly complete: (id: RunId, exitCode: number, summary?: string) => Effect.Effect<void, DatabaseError | RunNotFoundError>;
     /** Mark a run as failed */
-    readonly fail: (id: RunId, errorMessage: string, exitCode?: number) => Effect.Effect<void, DatabaseError>;
+    readonly fail: (id: RunId, errorMessage: string, exitCode?: number) => Effect.Effect<void, DatabaseError | RunNotFoundError>;
     /** Get currently running runs */
     readonly getRunning: () => Effect.Effect<readonly Run[], DatabaseError>;
     /** Count runs by status */

package/dist/repo/run-repo.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"run-repo.d.ts","sourceRoot":"","sources":["../../src/repo/run-repo.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,QAAQ,CAAA;AAC/C,OAAO,EAAE,YAAY,EAAE,MAAM,UAAU,CAAA;AACvC,OAAO,EAAE,aAAa,EAAoB,gBAAgB,EAAE,MAAM,cAAc,CAAA;AAEhF,OAAO,KAAK,EAAE,GAAG,EAAE,KAAK,EAAE,SAAS,EAAU,cAAc,EAAE,cAAc,EAAE,MAAM,yBAAyB,CAAA;;IAKxG,8BAA8B;qBACb,CAAC,KAAK,EAAE,cAAc,KAAK,MAAM,CAAC,MAAM,CAAC,GAAG,EAAE,aAAa,CAAC;IAE7E,uBAAuB;uBACJ,CAAC,EAAE,EAAE,KAAK,KAAK,MAAM,CAAC,MAAM,CAAC,GAAG,GAAG,IAAI,EAAE,aAAa,CAAC;IAE1E,2BAA2B;2BACJ,CAAC,MAAM,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,SAAS,GAAG,EAAE,EAAE,aAAa,CAAC;IAEvF,0BAA0B;2BACH,CAAC,MAAM,EAAE,SAAS,KAAK,MAAM,CAAC,MAAM,CAAC,SAAS,GAAG,EAAE,EAAE,aAAa,CAAC;IAE1F,sBAAsB;yBACD,CAAC,KAAK,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,SAAS,GAAG,EAAE,EAAE,aAAa,CAAC;IAEpF,mBAAmB;qBACF,CAAC,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,cAAc,KAAK,MAAM,CAAC,MAAM,CAAC,IAAI,EAAE,aAAa,CAAC;IAEzF,8BAA8B;uBACX,CAAC,EAAE,EAAE,KAAK,EAAE,QAAQ,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,IAAI,EAAE,aAAa,GAAG,gBAAgB,CAAC;IAE3H,2BAA2B;mBACZ,CAAC,EAAE,EAAE,KAAK,EAAE,YAAY,EAAE,MAAM,EAAE,QAAQ,CAAC,EAAE,MAAM,KAAK,MAAM,CAAC,MAAM,CAAC,IAAI,EAAE,aAAa,GAAG,gBAAgB,CAAC;IAE5H,iCAAiC;yBACZ,MAAM,MAAM,CAAC,MAAM,CAAC,SAAS,GAAG,EAAE,EAAE,aAAa,CAAC;IAEvE,2BAA2B;4BACH,MAAM,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,SAAS,EAAE,MAAM,CAAC,EAAE,aAAa,CAAC;;AA/BzF,qBAAa,aAAc,SAAQ,kBAiChC;CAAG;AAEN,eAAO,MAAM,iBAAiB,iDAoM7B,CAAA"}

package/dist/repo/run-repo.js

@@ -1,6 +1,6 @@
 import { Context, Effect, Layer } from "effect";
 import { SqliteClient } from "../db.js";
-import { DatabaseError } from "../errors.js";
+import { DatabaseError, EntityFetchError, RunNotFoundError } from "../errors.js";
 import { rowToRun, generateRunId } from "../mappers/run.js";
 export class RunRepository extends Context.Tag("RunRepository")() {
 }
@@ -16,6 +16,13 @@ export const RunRepositoryLive = Layer.effect(RunRepository, Effect.gen(function
               VALUES (?, ?, ?, ?, 'running', ?, ?, ?, ?)
             `).run(id, input.taskId ?? null, input.agent, now, input.pid ?? null, input.transcriptPath ?? null, input.contextInjected ?? null, JSON.stringify(input.metadata ?? {}));
                 const row = db.prepare("SELECT * FROM runs WHERE id = ?").get(id);
+                if (!row) {
+                    throw new EntityFetchError({
+                        entity: "run",
+                        id,
+                        operation: "insert"
+                    });
+                }
                 return rowToRun(row);
             },
             catch: (cause) => new DatabaseError({ cause })
@@ -76,6 +83,14 @@ export const RunRepositoryLive = Layer.effect(RunRepository, Effect.gen(function
                     updates.push("transcript_path = ?");
                     values.push(input.transcriptPath);
                 }
+                if (input.stderrPath !== undefined) {
+                    updates.push("stderr_path = ?");
+                    values.push(input.stderrPath);
+                }
+                if (input.stdoutPath !== undefined) {
+                    updates.push("stdout_path = ?");
+                    values.push(input.stdoutPath);
+                }
                 if (updates.length === 0)
                     return;
                 values.push(id);
@@ -83,25 +98,31 @@ export const RunRepositoryLive = Layer.effect(RunRepository, Effect.gen(function
             },
             catch: (cause) => new DatabaseError({ cause })
         }),
-        complete: (id, exitCode, summary) => Effect.try({
-            try: () => {
-                db.prepare(`
-              UPDATE runs
-              SET status = 'completed', ended_at = ?, exit_code = ?, summary = ?
-              WHERE id = ?
-            `).run(new Date().toISOString(), exitCode, summary ?? null, id);
-            },
-            catch: (cause) => new DatabaseError({ cause })
+        complete: (id, exitCode, summary) => Effect.gen(function* () {
+            const result = yield* Effect.try({
+                try: () => db.prepare(`
+                UPDATE runs
+                SET status = 'completed', ended_at = ?, exit_code = ?, summary = ?
+                WHERE id = ?
+              `).run(new Date().toISOString(), exitCode, summary ?? null, id),
+                catch: (cause) => new DatabaseError({ cause })
+            });
+            if (result.changes === 0) {
+                yield* Effect.fail(new RunNotFoundError({ id }));
+            }
         }),
-        fail: (id, errorMessage, exitCode) => Effect.try({
-            try: () => {
-                db.prepare(`
-              UPDATE runs
-              SET status = 'failed', ended_at = ?, exit_code = ?, error_message = ?
-              WHERE id = ?
-            `).run(new Date().toISOString(), exitCode ?? null, errorMessage, id);
-            },
-            catch: (cause) => new DatabaseError({ cause })
+        fail: (id, errorMessage, exitCode) => Effect.gen(function* () {
+            const result = yield* Effect.try({
+                try: () => db.prepare(`
+                UPDATE runs
+                SET status = 'failed', ended_at = ?, exit_code = ?, error_message = ?
+                WHERE id = ?
+              `).run(new Date().toISOString(), exitCode ?? null, errorMessage, id),
+                catch: (cause) => new DatabaseError({ cause })
+            });
+            if (result.changes === 0) {
+                yield* Effect.fail(new RunNotFoundError({ id }));
+            }
         }),
         getRunning: () => Effect.try({
             try: () => {

package/dist/repo/run-repo.js.map

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package/dist/repo/task-repo.d.ts

@@ -1,6 +1,6 @@
 import { Context, Effect, Layer } from "effect";
 import { SqliteClient } from "../db.js";
-import { DatabaseError } from "../errors.js";
+import { DatabaseError, TaskNotFoundError, StaleDataError } from "../errors.js";
 import type { Task, TaskId, TaskFilter } from "@jamesaphoenix/tx-types";
 declare const TaskRepository_base: Context.TagClass<TaskRepository, "TaskRepository", {
     readonly findById: (id: string) => Effect.Effect<Task | null, DatabaseError>;
@@ -9,10 +9,21 @@ declare const TaskRepository_base: Context.TagClass<TaskRepository, "TaskReposit
     readonly findByParent: (parentId: string | null) => Effect.Effect<readonly Task[], DatabaseError>;
     readonly getChildIds: (id: string) => Effect.Effect<readonly TaskId[], DatabaseError>;
     readonly getChildIdsForMany: (ids: readonly string[]) => Effect.Effect<Map<string, readonly TaskId[]>, DatabaseError>;
+    readonly getAncestorChain: (id: string) => Effect.Effect<readonly Task[], DatabaseError>;
+    readonly getDescendants: (id: string, maxDepth?: number) => Effect.Effect<readonly Task[], DatabaseError>;
     readonly insert: (task: Task) => Effect.Effect<void, DatabaseError>;
-    readonly update: (task: Task) => Effect.Effect<void, DatabaseError>;
-    readonly remove: (id: string) => Effect.Effect<void, DatabaseError>;
+    readonly update: (task: Task, expectedUpdatedAt?: Date) => Effect.Effect<void, DatabaseError | TaskNotFoundError | StaleDataError>;
+    readonly updateMany: (tasks: readonly Task[]) => Effect.Effect<void, DatabaseError | TaskNotFoundError | StaleDataError>;
+    readonly remove: (id: string) => Effect.Effect<void, DatabaseError | TaskNotFoundError>;
     readonly count: (filter?: TaskFilter) => Effect.Effect<number, DatabaseError>;
+    /**
+     * Atomically recover a task's status based on blocker states.
+     * Uses a single UPDATE with subquery to eliminate TOCTOU races.
+     * Sets status to 'ready' if all blockers are done, 'blocked' otherwise.
+     * Only updates if the task's current status matches expectedStatus.
+     * Returns true if a row was updated, false if no matching row found.
+     */
+    readonly recoverTaskStatus: (taskId: string, expectedStatus: string) => Effect.Effect<boolean, DatabaseError>;
 }>;
 export declare class TaskRepository extends TaskRepository_base {
 }

package/dist/repo/task-repo.d.ts.map

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