@jafreck/lore 0.3.4 → 0.3.6

package/dist/indexer/stages/embedding.js

@@ -3,11 +3,18 @@
  *
  * Pipeline stage: embed symbol signatures, documentation sections, and
  * commit messages into vec0 virtual tables for semantic search.
+ *
+ * Optimisations:
+ *   - **Token-aware batching**: batches are sized by estimated token budget
+ *     rather than a fixed item count, avoiding pathological padding waste
+ *     when one long signature inflates the whole batch.
+ *   - **Skip-unchanged**: in update mode, symbols whose embedding input text
+ *     has not changed (by SHA-256 hash) are skipped entirely.
+ *   - **Double-buffered I/O**: the next `embed()` call fires while the
+ *     current batch's vectors are written to SQLite.
  */
-import { setLoreMeta, createVec0Tables } from '../db.js';
-import { buildStructuralEmbeddingText } from '../embedder.js';
-/** Number of items to embed per batch. */
-const EMBED_BATCH_SIZE = 64;
+import { setLoreMeta, createVec0Tables } from '../../db/schema.js';
+import { buildStructuralEmbeddingText, hashEmbeddingText, tokenAwareBatch } from '../../embeddings/embedder.js';
 /**
  * Embed symbol signatures, documentation sections, and commit messages.
  *
@@ -27,8 +34,8 @@ export class EmbeddingStage {
             // Resolve scoped file/doc IDs for incremental embedding.
             const changedFileIds = resolveFileIds(db, context.changedSourcePaths, context.branch);
             const changedDocIds = resolveDocIds(db, context.changedDocPaths, context.branch);
-            await embedStructural(db, embedder, changedFileIds);
-            await embedDocumentation(db, embedder, changedDocIds);
+            await embedStructural(db, embedder, changedFileIds, /* skipUnchanged */ true);
+            await embedDocumentation(db, embedder, changedDocIds, /* skipUnchanged */ true);
         }
         else {
             await embedStructural(db, embedder);
@@ -40,11 +47,12 @@ export class EmbeddingStage {
         context.log.indexing('embedding complete');
     }
 }
-// ─── Structural symbol embeddings ─────────────────────────────────────────────
-async function embedStructural(db, embedder, fileIds) {
+async function embedStructural(db, embedder, fileIds, skipUnchanged = false) {
     setLoreMeta(db, 'embedding_model', embedder.modelName);
     setLoreMeta(db, 'embedding_dims', String(embedder.dims));
     createVec0Tables(db, embedder.dims);
+    // Ensure the hash tracking column exists (idempotent).
+    ensureEmbeddingHashColumn(db, 'symbol_embeddings');
     const baseQuery = `SELECT id, name, signature, resolved_type_signature, resolved_return_type
      FROM symbols
      WHERE (signature IS NOT NULL
@@ -59,49 +67,46 @@ async function embedStructural(db, embedder, fileIds) {
     else {
         symbols = db.prepare(baseQuery).all();
     }
-    const insertEmbed = db.prepare('INSERT OR REPLACE INTO symbol_embeddings(rowid, embedding) VALUES (CAST(? AS INTEGER), json(?))');
-    // P4: Pipeline — start embedding the next batch while writing the current one.
-    let pendingEmbed = null;
-    let pendingBatch = [];
-    for (let i = 0; i < symbols.length; i += EMBED_BATCH_SIZE) {
-        const batch = symbols.slice(i, i + EMBED_BATCH_SIZE);
-        const texts = batch.map((symbol) => buildStructuralEmbeddingText({
-            name: symbol.name,
-            signature: symbol.signature,
-            resolvedTypeSignature: symbol.resolved_type_signature,
-            resolvedReturnType: symbol.resolved_return_type,
-        }));
-        if (pendingEmbed) {
-            const embeddings = await pendingEmbed;
-            db.transaction(() => {
-                for (let j = 0; j < pendingBatch.length; j++) {
-                    const sym = pendingBatch[j];
-                    if (sym)
-                        insertEmbed.run(sym.id, JSON.stringify(embeddings[j]));
-                }
-            })();
-        }
-        pendingEmbed = embedder.embed(texts);
-        pendingBatch = batch;
+    // Build texts and compute hashes; filter out unchanged if requested.
+    const items = [];
+    const existingHashes = skipUnchanged ? loadExistingHashes(db, 'symbol_embeddings', symbols.map(s => s.id)) : new Map();
+    for (const sym of symbols) {
+        const text = buildStructuralEmbeddingText({
+            name: sym.name,
+            signature: sym.signature,
+            resolvedTypeSignature: sym.resolved_type_signature,
+            resolvedReturnType: sym.resolved_return_type,
+        });
+        const hash = hashEmbeddingText(text);
+        if (skipUnchanged && existingHashes.get(sym.id) === hash)
+            continue;
+        items.push({ sym, text, hash });
     }
-    if (pendingEmbed) {
-        const embeddings = await pendingEmbed;
+    if (items.length === 0)
+        return;
+    const insertEmbed = db.prepare('INSERT OR REPLACE INTO symbol_embeddings(rowid, embedding) VALUES (CAST(? AS INTEGER), json(?))');
+    const insertHash = db.prepare('INSERT OR REPLACE INTO symbol_embeddings_hashes(rowid, content_hash) VALUES (?, ?)');
+    const batches = tokenAwareBatch(items, (item) => item.text);
+    await embedBatchesDoubleBuffered(batches, embedder, (item) => item.text, (batch, embeddings) => {
         db.transaction(() => {
-            for (let j = 0; j < pendingBatch.length; j++) {
-                const sym = pendingBatch[j];
-                if (sym)
-                    insertEmbed.run(sym.id, JSON.stringify(embeddings[j]));
+            for (let j = 0; j < batch.length; j++) {
+                const item = batch[j];
+                if (item) {
+                    insertEmbed.run(item.sym.id, JSON.stringify(embeddings[j]));
+                    insertHash.run(item.sym.id, item.hash);
+                }
             }
         })();
-    }
+    });
 }
 // ─── Documentation section embeddings ─────────────────────────────────────────
-async function embedDocumentation(db, embedder, docIds) {
+async function embedDocumentation(db, embedder, docIds, skipUnchanged = false) {
     db.exec(`
     CREATE VIRTUAL TABLE IF NOT EXISTS doc_section_embeddings USING vec0(
       embedding FLOAT[${embedder.dims}]
     );
   `);
+    ensureEmbeddingHashColumn(db, 'doc_section_embeddings');
     let sections;
     if (docIds && docIds.length > 0) {
         sections = db.prepare(`SELECT id, title, content
@@ -116,36 +121,32 @@ async function embedDocumentation(db, embedder, docIds) {
     }
     if (sections.length === 0)
         return;
-    const insertEmbed = db.prepare('INSERT OR REPLACE INTO doc_section_embeddings(rowid, embedding) VALUES (CAST(? AS INTEGER), json(?))');
-    // P4: Pipeline — start embedding the next batch while writing the current one.
-    let pendingEmbed = null;
-    let pendingBatch = [];
-    for (let i = 0; i < sections.length; i += EMBED_BATCH_SIZE) {
-        const batch = sections.slice(i, i + EMBED_BATCH_SIZE);
-        const texts = batch.map(section => section.content || section.title);
-        if (pendingEmbed) {
-            const embeddings = await pendingEmbed;
-            db.transaction(() => {
-                for (let j = 0; j < pendingBatch.length; j++) {
-                    const section = pendingBatch[j];
-                    if (section)
-                        insertEmbed.run(section.id, JSON.stringify(embeddings[j]));
-                }
-            })();
-        }
-        pendingEmbed = embedder.embed(texts);
-        pendingBatch = batch;
+    // Build texts, compute hashes, filter unchanged.
+    const items = [];
+    const existingHashes = skipUnchanged ? loadExistingHashes(db, 'doc_section_embeddings', sections.map(s => s.id)) : new Map();
+    for (const section of sections) {
+        const text = section.content || section.title;
+        const hash = hashEmbeddingText(text);
+        if (skipUnchanged && existingHashes.get(section.id) === hash)
+            continue;
+        items.push({ section, text, hash });
     }
-    if (pendingEmbed) {
-        const embeddings = await pendingEmbed;
+    if (items.length === 0)
+        return;
+    const insertEmbed = db.prepare('INSERT OR REPLACE INTO doc_section_embeddings(rowid, embedding) VALUES (CAST(? AS INTEGER), json(?))');
+    const insertHash = db.prepare('INSERT OR REPLACE INTO doc_section_embeddings_hashes(rowid, content_hash) VALUES (?, ?)');
+    const batches = tokenAwareBatch(items, (item) => item.text);
+    await embedBatchesDoubleBuffered(batches, embedder, (item) => item.text, (batch, embeddings) => {
         db.transaction(() => {
-            for (let j = 0; j < pendingBatch.length; j++) {
-                const section = pendingBatch[j];
-                if (section)
-                    insertEmbed.run(section.id, JSON.stringify(embeddings[j]));
+            for (let j = 0; j < batch.length; j++) {
+                const item = batch[j];
+                if (item) {
+                    insertEmbed.run(item.section.id, JSON.stringify(embeddings[j]));
+                    insertHash.run(item.section.id, item.hash);
+                }
             }
         })();
-    }
+    });
 }
 // ─── Commit message embeddings ────────────────────────────────────────────────
 async function embedCommitMessages(db, embedder) {
@@ -158,34 +159,77 @@ async function embedCommitMessages(db, embedder) {
     if (commits.length === 0)
         return;
     const insertEmbed = db.prepare('INSERT OR REPLACE INTO commit_embeddings(rowid, embedding) VALUES (CAST(? AS INTEGER), json(?))');
-    // P4: Pipeline — start embedding the next batch while writing the current one.
+    const batches = tokenAwareBatch(commits, (c) => c.message);
+    await embedBatchesDoubleBuffered(batches, embedder, (c) => c.message, (batch, embeddings) => {
+        db.transaction(() => {
+            for (let j = 0; j < batch.length; j++) {
+                const commit = batch[j];
+                if (commit)
+                    insertEmbed.run(commit.rowid, JSON.stringify(embeddings[j]));
+            }
+        })();
+    });
+}
+// ─── Double-buffered batch embedding ──────────────────────────────────────────
+/**
+ * Embeds pre-batched items using double-buffered I/O: fires the next
+ * `embed()` call while writing the current batch's results to the DB.
+ */
+async function embedBatchesDoubleBuffered(batches, embedder, getText, writeBatch) {
     let pendingEmbed = null;
     let pendingBatch = [];
-    for (let i = 0; i < commits.length; i += EMBED_BATCH_SIZE) {
-        const batch = commits.slice(i, i + EMBED_BATCH_SIZE);
+    for (const batch of batches) {
+        const texts = batch.map(getText);
+        // Write the previous batch while starting the next embed.
         if (pendingEmbed) {
             const embeddings = await pendingEmbed;
-            db.transaction(() => {
-                for (let j = 0; j < pendingBatch.length; j++) {
-                    const commit = pendingBatch[j];
-                    if (commit)
-                        insertEmbed.run(commit.rowid, JSON.stringify(embeddings[j]));
-                }
-            })();
+            writeBatch(pendingBatch, embeddings);
         }
-        pendingEmbed = embedder.embed(batch.map((commit) => commit.message));
+        pendingEmbed = embedder.embed(texts);
         pendingBatch = batch;
     }
+    // Drain the last pending batch.
     if (pendingEmbed) {
         const embeddings = await pendingEmbed;
-        db.transaction(() => {
-            for (let j = 0; j < pendingBatch.length; j++) {
-                const commit = pendingBatch[j];
-                if (commit)
-                    insertEmbed.run(commit.rowid, JSON.stringify(embeddings[j]));
-            }
-        })();
+        writeBatch(pendingBatch, embeddings);
+    }
+}
+// ─── Skip-unchanged helpers ───────────────────────────────────────────────────
+/**
+ * Idempotently add a `content_hash` column to an embedding virtual table's
+ * shadow storage.  vec0 virtual tables don't support ALTER TABLE, so we use
+ * a companion regular table for the hash.
+ */
+function ensureEmbeddingHashColumn(db, tableName) {
+    db.exec(`
+    CREATE TABLE IF NOT EXISTS ${tableName}_hashes (
+      rowid INTEGER PRIMARY KEY,
+      content_hash TEXT NOT NULL
+    );
+  `);
+    // Migrate: if we previously stored content_hash inline in the INSERT OR REPLACE
+    // statement, the vec0 table ignores unknown columns silently, so nothing to migrate.
+}
+/**
+ * Load existing content hashes for a set of row IDs from the hash companion table.
+ */
+function loadExistingHashes(db, tableName, ids) {
+    const map = new Map();
+    if (ids.length === 0)
+        return map;
+    const hashTable = `${tableName}_hashes`;
+    const hasTable = db.prepare("SELECT 1 AS present FROM sqlite_master WHERE type = 'table' AND name = ?").get(hashTable);
+    if (!hasTable)
+        return map;
+    const CHUNK = 900;
+    for (let i = 0; i < ids.length; i += CHUNK) {
+        const chunk = ids.slice(i, i + CHUNK);
+        const rows = db.prepare(`SELECT rowid, content_hash FROM ${hashTable} WHERE rowid IN (${chunk.map(() => '?').join(', ')})`).all(...chunk);
+        for (const row of rows) {
+            map.set(row.rowid, row.content_hash);
+        }
     }
+    return map;
 }
 // ─── Update-mode helpers ──────────────────────────────────────────────────────
 function deleteSymbolEmbeddings(db, symbolIds) {

package/dist/indexer/stages/embedding.js.map

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package/dist/indexer/stages/import-resolution.js

@@ -5,7 +5,7 @@
  * external package names. Populates `file_imports.resolved_id` and
  * `external_deps` rows.
  */
-import { ImportResolver } from '../resolver.js';
+import { ImportResolver } from '../../resolution/resolver.js';
 // ─── Stage ────────────────────────────────────────────────────────────────────
 /**
  * Resolves raw imports in `file_imports` to internal file IDs (`resolved_id`)

package/dist/indexer/stages/import-resolution.js.map

@@ -1 +1 @@
-{"version":3,"file":"import-resolution.js","sourceRoot":"","sources":["../../../src/indexer/stages/import-resolution.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAGH,OAAO,EAAE,cAAc,EAAE,MAAM,gBAAgB,CAAC;AAEhD,iFAAiF;AAEjF;;;GAGG;AACH,MAAM,OAAO,qBAAqB;IACvB,IAAI,GAAG,mBAAmB,CAAC;IAEpC,KAAK,CAAC,OAAO,CAAC,OAAwB,EAAE,KAAyB;QAC/D,MAAM,EAAE,EAAE,EAAE,MAAM,EAAE,YAAY,EAAE,GAAG,OAAO,CAAC;QAC7C,MAAM,OAAO,GAAG,YAAY,CAAC,OAAO,CAAC;QACrC,MAAM,QAAQ,GAAG,IAAI,cAAc,EAAE,CAAC;QAEtC,6EAA6E;QAC7E,MAAM,IAAI,GAAG,EAAE;aACZ,OAAO,CACN;;;uDAG+C,CAChD;aACA,GAAG,CAAC,MAAM,CAMT,CAAC;QAEL,2EAA2E;QAC3E,MAAM,YAAY,GAAG,IAAI,GAAG,CACzB,EAAE,CAAC,OAAO,CAAC,6CAA6C,CAAC,CAAC,GAAG,CAAC,MAAM,CAAyC;aAC3G,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAC5B,CAAC;QAEF,MAAM,cAAc,GAAG,EAAE,CAAC,OAAO,CAC/B,sDAAsD,CACvD,CAAC;QACF,MAAM,iBAAiB,GAAG,EAAE,CAAC,OAAO,CAClC,sEAAsE,CACvE,CAAC;QAEF,EAAE,CAAC,WAAW,CAAC,GAAG,EAAE;YAClB,KAAK,MAAM,GAAG,IAAI,IAAI,EAAE,CAAC;gBACvB,MAAM,QAAQ,GAAG,QAAQ,CAAC,OAAO,CAC/B,EAAE,MAAM,EAAE,GAAG,CAAC,UAAU,EAAE,aAAa,EAAE,EAAE,EAAE,EAC7C,GAAG,CAAC,IAAI,EACR,OAAO,EACP,GAAG,CAAC,QAAQ,CACb,CAAC;gBAEF,IAAI,QAAQ,CAAC,YAAY,EAAE,CAAC;oBAC1B,MAAM,QAAQ,GAAG,YAAY,CAAC,GAAG,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAC;oBACzD,IAAI,QAAQ,KAAK,SAAS,EAAE,CAAC;wBAC3B,cAAc,CAAC,GAAG,CAAC,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,CAAC;oBACvC,CAAC;gBACH,CAAC;qBAAM,IAAI,QAAQ,CAAC,UAAU,IAAI,QAAQ,CAAC,YAAY,EAAE,CAAC;oBACxD,iBAAiB,CAAC,GAAG,CAAC,GAAG,CAAC,OAAO,EAAE,QAAQ,CAAC,YAAY,CAAC,CAAC;gBAC5D,CAAC;YACH,CAAC;QACH,CAAC,CAAC,EAAE,CAAC;QAEL,OAAO,CAAC,GAAG,CAAC,QAAQ,CAAC,kBAAkB,EAAE,EAAE,eAAe,EAAE,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC;IAC7E,CAAC;CACF"}
+{"version":3,"file":"import-resolution.js","sourceRoot":"","sources":["../../../src/indexer/stages/import-resolution.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAGH,OAAO,EAAE,cAAc,EAAE,MAAM,8BAA8B,CAAC;AAE9D,iFAAiF;AAEjF;;;GAGG;AACH,MAAM,OAAO,qBAAqB;IACvB,IAAI,GAAG,mBAAmB,CAAC;IAEpC,KAAK,CAAC,OAAO,CAAC,OAAwB,EAAE,KAAyB;QAC/D,MAAM,EAAE,EAAE,EAAE,MAAM,EAAE,YAAY,EAAE,GAAG,OAAO,CAAC;QAC7C,MAAM,OAAO,GAAG,YAAY,CAAC,OAAO,CAAC;QACrC,MAAM,QAAQ,GAAG,IAAI,cAAc,EAAE,CAAC;QAEtC,6EAA6E;QAC7E,MAAM,IAAI,GAAG,EAAE;aACZ,OAAO,CACN;;;uDAG+C,CAChD;aACA,GAAG,CAAC,MAAM,CAMT,CAAC;QAEL,2EAA2E;QAC3E,MAAM,YAAY,GAAG,IAAI,GAAG,CACzB,EAAE,CAAC,OAAO,CAAC,6CAA6C,CAAC,CAAC,GAAG,CAAC,MAAM,CAAyC;aAC3G,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAC5B,CAAC;QAEF,MAAM,cAAc,GAAG,EAAE,CAAC,OAAO,CAC/B,sDAAsD,CACvD,CAAC;QACF,MAAM,iBAAiB,GAAG,EAAE,CAAC,OAAO,CAClC,sEAAsE,CACvE,CAAC;QAEF,EAAE,CAAC,WAAW,CAAC,GAAG,EAAE;YAClB,KAAK,MAAM,GAAG,IAAI,IAAI,EAAE,CAAC;gBACvB,MAAM,QAAQ,GAAG,QAAQ,CAAC,OAAO,CAC/B,EAAE,MAAM,EAAE,GAAG,CAAC,UAAU,EAAE,aAAa,EAAE,EAAE,EAAE,EAC7C,GAAG,CAAC,IAAI,EACR,OAAO,EACP,GAAG,CAAC,QAAQ,CACb,CAAC;gBAEF,IAAI,QAAQ,CAAC,YAAY,EAAE,CAAC;oBAC1B,MAAM,QAAQ,GAAG,YAAY,CAAC,GAAG,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAC;oBACzD,IAAI,QAAQ,KAAK,SAAS,EAAE,CAAC;wBAC3B,cAAc,CAAC,GAAG,CAAC,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,CAAC;oBACvC,CAAC;gBACH,CAAC;qBAAM,IAAI,QAAQ,CAAC,UAAU,IAAI,QAAQ,CAAC,YAAY,EAAE,CAAC;oBACxD,iBAAiB,CAAC,GAAG,CAAC,GAAG,CAAC,OAAO,EAAE,QAAQ,CAAC,YAAY,CAAC,CAAC;gBAC5D,CAAC;YACH,CAAC;QACH,CAAC,CAAC,EAAE,CAAC;QAEL,OAAO,CAAC,GAAG,CAAC,QAAQ,CAAC,kBAAkB,EAAE,EAAE,eAAe,EAAE,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC;IAC7E,CAAC;CACF"}

package/dist/indexer/stages/index.d.ts

@@ -3,10 +3,12 @@
  *
  * Concrete pipeline stages with real implementations.
  */
+export { ScipSourceStage } from './scip-source.js';
 export { SourceIndexStage } from './source-index.js';
 export { DocsIndexStage } from './docs-index.js';
 export { ImportResolutionStage } from './import-resolution.js';
 export { DependencyApiStage } from './dependency-api.js';
+export { ScipEnrichmentStage } from './scip-enrichment.js';
 export { LspEnrichmentStage } from './lsp-enrichment.js';
 export { EmbeddingStage } from './embedding.js';
 //# sourceMappingURL=index.d.ts.map

package/dist/indexer/stages/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/indexer/stages/index.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,gBAAgB,EAAE,MAAM,mBAAmB,CAAC;AACrD,OAAO,EAAE,cAAc,EAAE,MAAM,iBAAiB,CAAC;AACjD,OAAO,EAAE,qBAAqB,EAAE,MAAM,wBAAwB,CAAC;AAC/D,OAAO,EAAE,kBAAkB,EAAE,MAAM,qBAAqB,CAAC;AACzD,OAAO,EAAE,kBAAkB,EAAE,MAAM,qBAAqB,CAAC;AACzD,OAAO,EAAE,cAAc,EAAE,MAAM,gBAAgB,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/indexer/stages/index.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAC;AACnD,OAAO,EAAE,gBAAgB,EAAE,MAAM,mBAAmB,CAAC;AACrD,OAAO,EAAE,cAAc,EAAE,MAAM,iBAAiB,CAAC;AACjD,OAAO,EAAE,qBAAqB,EAAE,MAAM,wBAAwB,CAAC;AAC/D,OAAO,EAAE,kBAAkB,EAAE,MAAM,qBAAqB,CAAC;AACzD,OAAO,EAAE,mBAAmB,EAAE,MAAM,sBAAsB,CAAC;AAC3D,OAAO,EAAE,kBAAkB,EAAE,MAAM,qBAAqB,CAAC;AACzD,OAAO,EAAE,cAAc,EAAE,MAAM,gBAAgB,CAAC"}

package/dist/indexer/stages/index.js

@@ -3,10 +3,12 @@
  *
  * Concrete pipeline stages with real implementations.
  */
+export { ScipSourceStage } from './scip-source.js';
 export { SourceIndexStage } from './source-index.js';
 export { DocsIndexStage } from './docs-index.js';
 export { ImportResolutionStage } from './import-resolution.js';
 export { DependencyApiStage } from './dependency-api.js';
+export { ScipEnrichmentStage } from './scip-enrichment.js';
 export { LspEnrichmentStage } from './lsp-enrichment.js';
 export { EmbeddingStage } from './embedding.js';
 //# sourceMappingURL=index.js.map

package/dist/indexer/stages/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/indexer/stages/index.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAC;AACnD,OAAO,EAAE,gBAAgB,EAAE,MAAM,mBAAmB,CAAC;AACrD,OAAO,EAAE,cAAc,EAAE,MAAM,iBAAiB,CAAC;AACjD,OAAO,EAAE,qBAAqB,EAAE,MAAM,wBAAwB,CAAC;AAC/D,OAAO,EAAE,kBAAkB,EAAE,MAAM,qBAAqB,CAAC;AACzD,OAAO,EAAE,mBAAmB,EAAE,MAAM,sBAAsB,CAAC;AAC3D,OAAO,EAAE,kBAAkB,EAAE,MAAM,qBAAqB,CAAC;AACzD,OAAO,EAAE,cAAc,EAAE,MAAM,gBAAgB,CAAC"}

package/dist/indexer/stages/lsp-enrichment.d.ts

@@ -23,8 +23,8 @@
  * LSP-based containment resolution.
  */
 import type { PipelineContext, PipelineStage } from '../pipeline.js';
-import type { Database } from '../db.js';
-import { LspEnrichmentCoordinator } from '../lsp/enrichment.js';
+import type { Database } from '../../db/schema.js';
+import { LspEnrichmentCoordinator } from '../../lsp/enrichment.js';
 /**
  * Enriches indexed artefacts with LSP-derived metadata.
  *

package/dist/indexer/stages/lsp-enrichment.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"lsp-enrichment.d.ts","sourceRoot":"","sources":["../../../src/indexer/stages/lsp-enrichment.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;GAuBG;AAGH,OAAO,KAAK,EAAE,eAAe,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AACrE,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AACnD,OAAO,EAAE,wBAAwB,EAAE,MAAM,yBAAyB,CAAC;AAGnE;;;;;GAKG;AACH,qBAAa,kBAAmB,YAAW,aAAa;IACtD,QAAQ,CAAC,IAAI,oBAAoB;IAEjC,OAAO,CAAC,WAAW,CAAyC;IAEtD,OAAO,CAAC,OAAO,EAAE,eAAe,EAAE,KAAK,EAAE,OAAO,GAAG,QAAQ,GAAG,OAAO,CAAC,IAAI,CAAC;IAiD3E,OAAO,IAAI,OAAO,CAAC,IAAI,CAAC;CAM/B;AAID;;;GAGG;AACH,wBAAsB,iBAAiB,CACrC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EACrB,MAAM,EAAE,MAAM,EACd,KAAK,EAAE,KAAK,CAAC;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAE,CAAC,EAChD,WAAW,EAAE,wBAAwB,GACpC,OAAO,CAAC,IAAI,CAAC,CAgMf"}

package/dist/indexer/stages/lsp-enrichment.js

@@ -23,8 +23,8 @@
  * LSP-based containment resolution.
  */
 import * as fs from 'node:fs';
-import { LspEnrichmentCoordinator } from '../lsp/enrichment.js';
-import { buildStructuralEmbeddingText } from '../embedder.js';
+import { LspEnrichmentCoordinator } from '../../lsp/enrichment.js';
+import { buildStructuralEmbeddingText } from '../../embeddings/embedder.js';
 /**
  * Enriches indexed artefacts with LSP-derived metadata.
  *
@@ -37,13 +37,45 @@ export class LspEnrichmentStage {
     async execute(context, _mode) {
         if (!context.lsp?.enabled || context.files.length === 0)
             return;
-        this.coordinator = new LspEnrichmentCoordinator(context.lsp, context.walkerConfig.rootDir);
-        // Start language servers for all languages seen in the file list.
-        const languages = new Set(context.files.map(f => f.language));
+        const scipSourced = context.scipSourcedLanguages;
+        const scipCovered = context.scipCoveredLanguages;
+        // Split files into two groups:
+        // 1. Non-SCIP files: full enrichment (all symbols, refs, type_refs)
+        // 2. SCIP-sourced files: targeted enrichment (only unresolved refs)
+        const fullEnrichFiles = [];
+        const scipFiles = [];
+        for (const f of context.files) {
+            if (scipSourced?.has(f.language) || scipCovered?.has(f.language)) {
+                scipFiles.push(f);
+            }
+            else {
+                fullEnrichFiles.push(f);
+            }
+        }
+        if (fullEnrichFiles.length === 0 && scipFiles.length === 0) {
+            context.log.indexing('lsp-enrichment: no files to enrich');
+            return;
+        }
+        // Start language servers for all languages that need enrichment.
+        const languages = new Set([
+            ...fullEnrichFiles.map(f => f.language),
+            ...scipFiles.map(f => f.language),
+        ]);
         if (context.indexDependencies)
             languages.add('typescript');
+        this.coordinator = new LspEnrichmentCoordinator(context.lsp, context.walkerConfig.rootDir);
         await this.coordinator.start(languages);
-        await enrichProjectRefs(context.db, context.branch, context.files, this.coordinator);
+        // Full enrichment for non-SCIP files (all targets).
+        if (fullEnrichFiles.length > 0) {
+            await enrichProjectRefs(context.db, context.branch, fullEnrichFiles, this.coordinator);
+        }
+        // Targeted enrichment for SCIP-sourced files (only unresolved refs).
+        if (scipFiles.length > 0) {
+            context.log.indexing('lsp-enrichment: enriching unresolved SCIP refs', {
+                files: scipFiles.length,
+            });
+            await enrichUnresolvedScipRefs(context.db, context.branch, scipFiles, this.coordinator);
+        }
     }
     async dispose() {
         if (this.coordinator) {
@@ -171,4 +203,97 @@ export async function enrichProjectRefs(db, branch, files, coordinator) {
             runInTransaction(updates);
     }
 }
+// ─── Targeted LSP enrichment for SCIP-sourced files ───────────────────────────
+/**
+ * For SCIP-sourced files, only enrich refs that are still `unresolved`.
+ *
+ * SCIP pre-resolves most refs during `ScipSourceStage`, but some refs
+ * (notably member-access calls like `db.prepare(...)`) remain unresolved
+ * because SCIP tracks the receiver and method as separate occurrences.
+ *
+ * LSP can resolve these by querying `textDocument/definition` at the
+ * call-site position.  We write `definition_path` / `definition_line`
+ * so the downstream resolution stage can map them to a `callee_id`.
+ */
+async function enrichUnresolvedScipRefs(db, branch, files, coordinator) {
+    // Only select refs that SCIP left unresolved.
+    const selectUnresolvedCallRefs = db.prepare(`SELECT sr.id, sr.call_line, sr.call_character
+     FROM symbol_refs sr
+     JOIN symbols s ON s.id = sr.caller_id
+     JOIN files f ON f.id = s.file_id
+     WHERE f.path = ? AND f.branch = ?
+       AND sr.resolution_method = 'unresolved'
+       AND sr.definition_path IS NULL
+     ORDER BY sr.id`);
+    const selectUnresolvedTypeRefs = db.prepare(`SELECT tr.id, tr.ref_line, tr.ref_character
+     FROM type_refs tr
+     JOIN files f ON f.id = tr.file_id
+     WHERE f.path = ? AND f.branch = ?
+       AND tr.resolution_method = 'unresolved'
+       AND tr.definition_path IS NULL
+     ORDER BY tr.id`);
+    const updateCallRef = db.prepare(`UPDATE symbol_refs
+     SET resolved_type_signature = ?, resolved_return_type = ?,
+         definition_uri = ?, definition_path = ?, definition_line = ?, definition_character = ?,
+         resolution_method = 'unresolved'
+     WHERE id = ?`);
+    const updateTypeRef = db.prepare(`UPDATE type_refs
+     SET resolved_type_signature = ?,
+         definition_uri = ?, definition_path = ?, definition_line = ?, definition_character = ?,
+         resolution_method = 'unresolved'
+     WHERE id = ?`);
+    const runInTransaction = db.transaction((updates) => {
+        for (const fn of updates)
+            fn();
+    });
+    for (const file of files) {
+        if (!file || !fs.existsSync(file.path))
+            continue;
+        let source;
+        try {
+            source = fs.readFileSync(file.path, 'utf8');
+        }
+        catch {
+            continue;
+        }
+        const tagged = [];
+        const callRefs = selectUnresolvedCallRefs.all(file.path, branch);
+        for (const cr of callRefs) {
+            tagged.push({ table: 'callRef', rowId: cr.id, line: cr.call_line, character: cr.call_character ?? 0 });
+        }
+        const typeRefs = selectUnresolvedTypeRefs.all(file.path, branch);
+        for (const tr of typeRefs) {
+            tagged.push({ table: 'typeRef', rowId: tr.id, line: tr.ref_line, character: tr.ref_character ?? 0 });
+        }
+        if (tagged.length === 0)
+            continue;
+        const metadata = await coordinator.enrich({
+            filePath: file.path,
+            language: file.language,
+            source,
+            targets: tagged.map(t => ({ line: t.line, character: t.character })),
+        });
+        const updates = [];
+        for (let i = 0; i < tagged.length; i++) {
+            const tag = tagged[i];
+            const m = metadata[i];
+            if (!m)
+                continue;
+            switch (tag.table) {
+                case 'callRef':
+                    updates.push(() => {
+                        updateCallRef.run(m.resolvedTypeSignature, m.resolvedReturnType, m.definitionUri, m.definitionPath, m.definitionLine, m.definitionCharacter, tag.rowId);
+                    });
+                    break;
+                case 'typeRef':
+                    updates.push(() => {
+                        updateTypeRef.run(m.resolvedTypeSignature, m.definitionUri, m.definitionPath, m.definitionLine, m.definitionCharacter, tag.rowId);
+                    });
+                    break;
+            }
+        }
+        if (updates.length > 0)
+            runInTransaction(updates);
+    }
+}
 //# sourceMappingURL=lsp-enrichment.js.map

package/dist/indexer/stages/lsp-enrichment.js.map

@@ -1 +1 @@
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