@jafreck/lore 0.3.4 → 0.3.6

package/README.md

@@ -7,15 +7,17 @@
 [![Node.js](https://img.shields.io/badge/node-%3E%3D22.0.0-brightgreen)](https://nodejs.org)
 [![TypeScript](https://img.shields.io/badge/TypeScript-5.9+-blue)](https://www.typescriptlang.org)
 
-**The teammate that has seen it all** 
+**The teammate that knows it all** 
 
-Lore is your agent's institutional knowledge over the codebase — it knows what was built, why it changed, and how it all connects. Lore indexes your code and git history into a structured knowledge base that agents query through MCP. It maps symbols, imports, call relationships, type relationships, routes, annotations, and git history — with optional embeddings for semantic search — so agents can reason about your codebase
-without re-reading it from scratch.
+Lore holds your agent's institutional knowledge over the codebase — it knows what was built, why it changed, and how it all connects. Lore indexes your code and git history into a structured knowledge base that agents query through MCP. It maps symbols, imports, call relationships, type relationships, routes, annotations, docs, and all git data — with optional embeddings for semantic search — so agents can reason about your codebase without re-reading it from scratch.
+
+Lore-enabled agents achieve up to **2.1× faster** responses, up to **79% fewer tokens**, and up to **+43pp correctness improvement** on code intelligence tasks compared to a baseline agent grep and file reads alone. See the [full benchmark results](docs/benchmark-results.md) for details.
 
 ## What Lore does
 
-- Parses source files and extracts symbols, imports, call refs, type refs, annotations, and API routes across all 23 supported languages
-- Resolves internal vs external imports and builds call/import/module/inheritance/type-dependency graph edges using a 3-tier resolution strategy (LSP containment, same-file name match, unique name match)
+- Indexes source files using SCIP indexers by default for pre-resolved symbols and edges, with tree-sitter parsing as a fallback for languages without a SCIP indexer
+- Extracts symbols, imports, call refs, type refs, annotations, and API routes across all 23 supported languages
+- Resolves internal vs external imports and builds call/import/module/inheritance/type-dependency graph edges using a 3-tier resolution strategy (SCIP/LSP containment, same-file name match, unique name match)
 - Discovers and indexes documentation (`.md`, `.rst`, `.adoc`, `.txt`) with inferred kinds/titles
 - Stores everything in a normalized SQL schema with optional vector search
 - Enables RAG-style retrieval with semantic/fused search across symbols and doc sections
@@ -36,6 +38,7 @@ flowchart LR
     end
 
     subgraph Lore Indexer
+      SCIPDIRECT[SCIP Source<br/>pre-resolved symbols + refs] --> WALK
       WALK[Walker] --> PARSE[Parser] --> EXTRACT[Extractors<br/>symbols · imports · call refs<br/>type refs · routes · annotations]
         EXTRACT --> RESOLVE[Import Resolver<br/>internal ↔ external]
       EXTRACT --> CALLGRAPH[Relationship Resolver]
@@ -64,6 +67,7 @@ flowchart LR
         METRICS[lore_metrics]
         COVERAGE[lore_coverage]
         WRITEBACK[lore_writeback]
+        ANALYZE[lore_analyze]
     end
 
     subgraph MCP_CLIENTS[MCP Clients — Agents]
@@ -84,10 +88,10 @@ flowchart LR
     RESOLVE -.->|optional| EMBED
     EMBED -.-> DB
 
-    DB --- LOOKUP & SEARCH & DOCS_TOOL & ANNOT & GRAPH & ROUTES & NOTES & ARCH & TESTMAP & SNIPPET & BLAME & HISTORY & METRICS & COVERAGE & WRITEBACK
+    DB --- LOOKUP & SEARCH & DOCS_TOOL & ANNOT & GRAPH & ROUTES & NOTES & ARCH & TESTMAP & SNIPPET & BLAME & HISTORY & METRICS & COVERAGE & WRITEBACK & ANALYZE
     EMBED <-.->|semantic/fused| SEARCH
 
-    LOOKUP & SEARCH & DOCS_TOOL & ANNOT & GRAPH & ROUTES & NOTES & ARCH & TESTMAP & SNIPPET & BLAME & HISTORY & METRICS & COVERAGE & WRITEBACK <--> MCP_CLIENTS
+    LOOKUP & SEARCH & DOCS_TOOL & ANNOT & GRAPH & ROUTES & NOTES & ARCH & TESTMAP & SNIPPET & BLAME & HISTORY & METRICS & COVERAGE & WRITEBACK & ANALYZE <--> MCP_CLIENTS
 ```
 
 Lore sits between your codebase and any LLM-powered tool. A `LoreRuntime`
@@ -101,20 +105,22 @@ by `IndexPipeline`. `IndexBuilder` is now a thin façade (~310 lines, down from
 updates. The stage ordering enforces data dependencies structurally:
 
 ```
-SourceIndex → DocsIndex → ImportResolution → DependencyApi
-  → LspEnrichment → Resolution → TestMap → History → Embedding
+ScipSource → SourceIndex → DocsIndex → ImportResolution → DependencyApi
+  → ScipEnrichment → LspEnrichment → Resolution → TestMap → History → Embedding
 ```
 
-Each stage walks source files, parses them into ASTs, and extracts
-symbols/imports/call-refs via language-specific extractors, then resolves
-imports (internal vs external) and resolves symbol references using a
-**3-tier resolution** strategy: LSP containment → same-file name match →
-unique name match. An optional **LSP enrichment** stage queries language
-servers with batch-pipelined hover + definition requests. An optional
-**embedder** generates dense vectors for semantic search (with async
-initialization so the MCP server starts instantly), and a parallel **git
-history** ingest captures commits, diffs, and refs. Everything is persisted to
-a normalized SQL database.
+**SCIP is the default source stage.** `ScipSourceStage` runs first and
+populates symbols, refs, and pre-resolved edges for every language that has
+a SCIP indexer available. `SourceIndexStage` then handles remaining languages
+(or all languages if SCIP is explicitly disabled) via tree-sitter as a
+fallback. A **SCIP enrichment** stage then writes definition locations and
+type metadata from SCIP data, while an optional **LSP enrichment** stage can
+enrich symbols not already covered by SCIP. Symbol references are
+resolved using a **3-tier strategy**: SCIP/LSP containment → same-file name
+match → unique name match. An optional **embedder** generates dense vectors
+for semantic search (with async initialization so the MCP server starts
+instantly), and a parallel **git history** ingest captures commits, diffs,
+and refs. Everything is persisted to a normalized SQL database.
 
 The **MCP server** uses a `ToolRegistry` that auto-discovers tool modules
 from their exported `toolDef` / `handler` definitions — no duplicate schema
@@ -196,6 +202,7 @@ await builder.build();
 | `lore_metrics` | Aggregate index metrics plus coverage/staleness fields |
 | `lore_coverage` | Symbol-level coverage, uncovered lines, and staleness metadata |
 | `lore_writeback` | Persist agent-authored symbol summaries |
+| `lore_analyze` | Run graph analysis primitives: symbol-level cycle detection (SCC), connected components (file or symbol scope), bounded-size symbol clustering, and condensed codebase summary |
 
 ### lore_lookup query options
 
@@ -286,10 +293,11 @@ has its own ingestion pipeline and can be enabled independently.
 
 ### Source code
 
-The indexer walks source files, parses them into ASTs via tree-sitter, and
-extracts symbols, imports, and call references through language-specific
-extractors. The import resolver classifies each import as internal or external,
-and a call-graph builder creates edges between symbols.
+The indexer uses a SCIP-first strategy: for languages with a SCIP indexer it
+produces symbols and pre-resolved edges directly, then falls back to tree-sitter
+parsing for remaining languages. Optional LSP enrichment can augment symbols
+from either path. The import resolver classifies each import as internal or
+external, and a call-graph builder creates edges between symbols.
 
 Programmatic example:
 
@@ -380,14 +388,20 @@ npx @jafreck/lore ingest-coverage --db ./lore.db --root ./my-project \
 
 Lore optionally generates dense vector embeddings for semantic search using
 `@huggingface/transformers` (Transformers.js), which runs ONNX models natively
-in Node.js — no Python or external processes required. Specify the model with
-`--embedding-model`:
+in Node.js — no Python or external processes required. The default model is
+`Qwen/Qwen3-Embedding-0.6B` (1024-dim); override with `--embedding-model`:
 
 ```bash
 npx @jafreck/lore index --root ./my-project --db ./lore.db \
   --embedding-model 'nomic-ai/nomic-embed-text-v1.5'
 ```
 
+Hardware acceleration is automatic: CoreML on Apple Silicon, WebGPU when
+available, CPU elsewhere. Override via the `LORE_EMBED_DEVICE` env var.
+Quantized ONNX dtype (fp32/fp16/q8/q4) is configurable with `LORE_EMBED_DTYPE`.
+In update/watch/poll mode, symbols and docs whose embedding text is unchanged
+(SHA-256 hash comparison) are skipped entirely for fast incremental re-embeds.
+
 At query time, `lore_search` in `semantic` or `fused` mode embeds the query
 and performs cosine similarity against stored vectors. If the model cannot
 initialize, search gracefully degrades to structural BM25.
@@ -408,7 +422,7 @@ SQLite-only — language servers are never invoked at runtime.
 
 LSP precedence:
 
-1. CLI flags (`--lsp` / `--no-lsp`)
+1. CLI flag (`--lsp`)
 2. `.lore.config` `lsp.enabled`
 3. Built-in default (`false`)
 
@@ -506,7 +520,7 @@ are fast even on large repositories.
 Build or update a knowledge base.
 
 ```bash
-npx @jafreck/lore index --root <dir> --db <path> [--embedding-model <id>] [--blocking-embedder] [--index-deps] [--history] [--history-depth <n>] [--history-all] [--include <glob>] [--exclude <glob>] [--language <lang>] [--docs-include <glob>] [--docs-exclude <glob>] [--docs-extension <ext>] [--docs-auto-notes|--no-docs-auto-notes] [--lsp] [--no-lsp]
+npx @jafreck/lore index --root <dir> --db <path> [--embedding-model <id>] [--blocking-embedder] [--index-deps] [--history] [--history-depth <n>] [--history-all] [--include <glob>] [--exclude <glob>] [--language <lang>] [--docs-include <glob>] [--docs-exclude <glob>] [--docs-extension <ext>] [--docs-auto-notes|--no-docs-auto-notes] [--lsp] [--no-scip]
 ```
 
 ### lore refresh
@@ -514,9 +528,9 @@ npx @jafreck/lore index --root <dir> --db <path> [--embedding-model <id>] [--blo
 Incremental refresh (one-shot, watch, or poll).
 
 ```bash
-npx @jafreck/lore refresh --db <path> --root <dir> [--index-deps] [--history] [--history-depth <n>] [--history-all] [--docs-include <glob>] [--docs-exclude <glob>] [--docs-extension <ext>] [--docs-auto-notes|--no-docs-auto-notes] [--lsp] [--no-lsp]
-npx @jafreck/lore refresh --db <path> --root <dir> --watch [--index-deps] [--history] [--docs-include <glob>] [--docs-exclude <glob>] [--docs-extension <ext>] [--lsp] [--no-lsp]
-npx @jafreck/lore refresh --db <path> --root <dir> --poll [--index-deps] [--history] [--docs-include <glob>] [--docs-exclude <glob>] [--docs-extension <ext>] [--lsp] [--no-lsp]
+npx @jafreck/lore refresh --db <path> --root <dir> [--index-deps] [--history] [--history-depth <n>] [--history-all] [--docs-include <glob>] [--docs-exclude <glob>] [--docs-extension <ext>] [--docs-auto-notes|--no-docs-auto-notes] [--lsp] [--no-scip]
+npx @jafreck/lore refresh --db <path> --root <dir> --watch [--index-deps] [--history] [--docs-include <glob>] [--docs-exclude <glob>] [--docs-extension <ext>] [--lsp] [--no-scip]
+npx @jafreck/lore refresh --db <path> --root <dir> --poll [--index-deps] [--history] [--docs-include <glob>] [--docs-exclude <glob>] [--docs-extension <ext>] [--lsp] [--no-scip]
 ```
 
 ### lore hooks
@@ -524,7 +538,7 @@ npx @jafreck/lore refresh --db <path> --root <dir> --poll [--index-deps] [--hist
 Install repo-local git hooks for automatic refresh.
 
 ```bash
-npx @jafreck/lore hooks --root <repo> --db <path> [--history] [--lsp] [--no-lsp]
+npx @jafreck/lore hooks --root <repo> --db <path> [--history] [--lsp] [--no-scip]
 ```
 
 ### lore ingest-coverage
@@ -543,6 +557,14 @@ Start the MCP server over stdio.
 npx @jafreck/lore mcp --db <path> [--blocking-embedder]
 ```
 
+### lore analyze
+
+Run graph analysis on an indexed knowledge base.
+
+```bash
+npx @jafreck/lore analyze --db <path> [--mode <cycles|components|clusters|summary>] [--edge-kinds <call|type|both>] [--branch <name>] [--max-lines <n>]
+```
+
 ## Build from source
 
 ```bash

package/dist/cli.js

@@ -16,7 +16,8 @@
  *                         Ingest a coverage report file into the knowledge base.
  */
 import * as fs from 'node:fs';
-import { loadLspSettingsFromLoreConfig, resolveEffectiveLspSettings, } from './indexer/lsp/config.js';
+import { loadLspSettingsFromLoreConfig, resolveEffectiveLspSettings, } from './lsp/config.js';
+import { loadScipSettingsFromLoreConfig, resolveEffectiveScipSettings, } from './scip/config.js';
 import { initLogger, LogLevel, LOG_LEVEL_NAMES } from './logger.js';
 import { killAllTracked } from './process-tracker.js';
 import { LoreRuntime } from './runtime.js';
@@ -29,10 +30,12 @@ function usage() {
   lore refresh --db <path> --root <dir> [--index-deps] [--history] [--history-depth <n>] [--history-all]  Run an incremental index update and exit
   lore refresh --db <path> --root <dir> --watch [--embedding-model <id>] Watch for file changes and refresh automatically
   lore refresh --db <path> --root <dir> --poll [--embedding-model <id>]  Poll for file changes and refresh automatically
-  lore hooks --db <path> --root <dir> [--history] [--history-depth <n>] [--history-all] [--lsp] [--no-lsp]
+  lore hooks --db <path> --root <dir> [--history] [--history-depth <n>] [--history-all] [--lsp]
                          Install git hooks for automatic refresh on commit/merge/checkout
   lore ingest-coverage --db <path> --root <dir> --file <path> --format <lcov|cobertura> [--commit <sha>]
                          Ingest an explicit coverage report file into the knowledge base
+  lore analyze --db <path> [--mode <mode>] [--edge-kinds <kind>] [--branch <name>] [--max-lines <n>]
+                         Run graph analysis on the knowledge-base (cycles, components, clusters, summary)
 
 Options:
   --root <dir>             Root directory to index (required for index, refresh)
@@ -52,8 +55,8 @@ Options:
   --no-docs-auto-notes     Disable doc-based note seeding during indexing
   --watch                  Enable fs-event watch mode (low-latency, may miss events on some platforms)
   --poll                   Enable polling mode (reliable but higher CPU/IO cost)
-  --lsp                    Force-enable index-time LSP settings
-  --no-lsp                 Force-disable index-time LSP settings
+  --lsp                    Enable index-time LSP enrichment (disabled by default)
+  --no-scip                Disable index-time SCIP indexing (enabled by default)
   --file <path>            Coverage report path (required for ingest-coverage)
   --format <name>          Coverage format: lcov or cobertura (required for ingest-coverage)
   --commit <sha>           Commit SHA to associate with coverage ingestion (default: HEAD)
@@ -91,14 +94,12 @@ function docsAutoNotesFlag(args) {
     return true;
 }
 function explicitLspEnabled(args) {
-    const enabled = args.includes('--lsp');
-    const disabled = args.includes('--no-lsp');
-    if (enabled && disabled) {
-        throw new Error('cannot combine --lsp and --no-lsp');
-    }
-    if (enabled)
+    if (args.includes('--lsp'))
         return true;
-    if (disabled)
+    return undefined;
+}
+function explicitScipEnabled(args) {
+    if (args.includes('--no-scip'))
         return false;
     return undefined;
 }
@@ -156,8 +157,10 @@ async function main() {
             historyDepth = Math.floor(parsed);
         }
         let lspEnabled;
+        let scipEnabled;
         try {
             lspEnabled = explicitLspEnabled(args);
+            scipEnabled = explicitScipEnabled(args);
         }
         catch (error) {
             const message = error instanceof Error ? error.message : String(error);
@@ -176,6 +179,17 @@ async function main() {
             process.exit(1);
             return;
         }
+        let scipSettings;
+        try {
+            const scipConfig = loadScipSettingsFromLoreConfig(rootDir);
+            scipSettings = resolveEffectiveScipSettings(scipConfig, { ...(scipEnabled !== undefined && { enabled: scipEnabled }) });
+        }
+        catch (error) {
+            const message = error instanceof Error ? error.message : String(error);
+            console.error(`Error: ${message}\n`);
+            process.exit(1);
+            return;
+        }
         const includeGlobs = flags(args, '--include');
         const excludeGlobs = flags(args, '--exclude');
         const languageNames = flags(args, '--language');
@@ -229,6 +243,7 @@ async function main() {
             docsAutoNotes,
             indexDependencies,
             lsp: lspSettings,
+            scip: scipSettings,
             ...(embeddingModel && { embeddingModel }),
             ...(shouldEnableHistory && {
                 history: {
@@ -260,9 +275,9 @@ async function main() {
         // library entry point for consumers who only need the indexer.
         const { McpServer } = await import('@modelcontextprotocol/sdk/server/mcp.js');
         const { StdioServerTransport } = await import('@modelcontextprotocol/sdk/server/stdio.js');
-        const { openReadOnly } = await import('./lore-server/db.js');
-        const { createLoreMcpServer } = await import('./lore-server/server.js');
-        const { getLoreMeta } = await import('./indexer/db.js');
+        const { openReadOnly } = await import('./db/read-only.js');
+        const { createLoreMcpServer } = await import('./server/server.js');
+        const { getLoreMeta } = await import('./db/schema.js');
         const db = openReadOnly(dbPath);
         // Gather DB stats for startup log
         const totalFiles = db.prepare('SELECT COUNT(*) AS cnt FROM files').get().cnt;
@@ -295,6 +310,7 @@ async function main() {
             rootDir: rootDir ?? '.',
             walkerConfig: { rootDir: rootDir ?? '.' },
             lsp: null,
+            scip: null,
             history: false,
             indexDependencies: false,
             docsAutoNotes: true,
@@ -350,8 +366,10 @@ async function main() {
             historyDepth = Math.floor(parsed);
         }
         let lspEnabled;
+        let scipEnabled2;
         try {
             lspEnabled = explicitLspEnabled(args);
+            scipEnabled2 = explicitScipEnabled(args);
         }
         catch (error) {
             const message = error instanceof Error ? error.message : String(error);
@@ -370,6 +388,17 @@ async function main() {
             process.exit(1);
             return;
         }
+        let scipSettings;
+        try {
+            const scipConfig = loadScipSettingsFromLoreConfig(rootDir);
+            scipSettings = resolveEffectiveScipSettings(scipConfig, { ...(scipEnabled2 !== undefined && { enabled: scipEnabled2 }) });
+        }
+        catch (error) {
+            const message = error instanceof Error ? error.message : String(error);
+            console.error(`Error: ${message}\n`);
+            process.exit(1);
+            return;
+        }
         const shouldEnableHistory = historyEnabled || historyAll || historyDepth !== undefined;
         const historyOption = shouldEnableHistory
             ? {
@@ -390,6 +419,7 @@ async function main() {
         const refreshOptions = {
             indexDependencies,
             lsp: lspSettings,
+            scip: scipSettings,
             ...(shouldEnableHistory && { history: historyOption }),
         };
         // Build an optional long-lived embedder for watch/poll modes.
@@ -400,6 +430,7 @@ async function main() {
                 rootDir,
                 walkerConfig,
                 lsp: lspSettings,
+                scip: scipSettings,
                 history: shouldEnableHistory ? historyOption : false,
                 indexDependencies,
                 docsAutoNotes,
@@ -419,8 +450,8 @@ async function main() {
             const dbExists = fs.existsSync(dbPath);
             if (dbExists) {
                 const [{ openDb }, { walkFiles }] = await Promise.all([
-                    import('./indexer/db.js'),
-                    import('./indexer/walker.js'),
+                    import('./db/schema.js'),
+                    import('./discovery/walker.js'),
                 ]);
                 const files = await walkFiles(walkerConfig);
                 const db = openDb(dbPath);
@@ -454,8 +485,10 @@ async function main() {
         const historyDepthRaw = flag(args, '--history-depth');
         const includeHistory = historyEnabled || historyAll || historyDepthRaw !== undefined;
         let lspEnabled;
+        let scipEnabled3;
         try {
             lspEnabled = explicitLspEnabled(args);
+            scipEnabled3 = explicitScipEnabled(args);
         }
         catch (error) {
             const message = error instanceof Error ? error.message : String(error);
@@ -474,13 +507,22 @@ async function main() {
             process.exit(1);
             return;
         }
-        const { installGitHooks } = await import('./indexer/git-hooks.js');
+        let scipSettings;
+        try {
+            const scipConfig = loadScipSettingsFromLoreConfig(rootDir);
+            scipSettings = resolveEffectiveScipSettings(scipConfig, { ...(scipEnabled3 !== undefined && { enabled: scipEnabled3 }) });
+        }
+        catch {
+            // SCIP config errors in hooks are non-fatal.
+        }
+        const { installGitHooks } = await import('./git/hooks.js');
         const result = installGitHooks({
             repoRoot: rootDir,
             rootDir,
             dbPath,
             includeHistory,
             lspEnabled: lspSettings.enabled,
+            scipEnabled: scipSettings?.enabled ?? false,
         });
         process.stderr.write(JSON.stringify({
             level: 'info',
@@ -510,6 +552,60 @@ async function main() {
         const builder = new IndexBuilder(dbPath, { rootDir });
         await builder.ingestCoverage(reportPath, format, commitSha);
     }
+    else if (subcommand === 'analyze') {
+        const dbPath = flag(args, '--db');
+        if (!dbPath) {
+            console.error('Error: --db <path> is required for the analyze subcommand.\n');
+            usage();
+            return;
+        }
+        const mode = flag(args, '--mode') ?? 'summary';
+        const validModes = ['cycles', 'components', 'clusters', 'summary'];
+        if (!validModes.includes(mode)) {
+            console.error(`Error: --mode must be one of: ${validModes.join(', ')}\n`);
+            usage();
+            return;
+        }
+        const edgeKindsRaw = flag(args, '--edge-kinds') ?? 'both';
+        const validEdgeKinds = ['call', 'type', 'both'];
+        if (!validEdgeKinds.includes(edgeKindsRaw)) {
+            console.error(`Error: --edge-kinds must be one of: ${validEdgeKinds.join(', ')}\n`);
+            usage();
+            return;
+        }
+        const edgeKinds = edgeKindsRaw;
+        const branch = flag(args, '--branch');
+        const maxLinesRaw = flag(args, '--max-lines');
+        let maxLines;
+        if (maxLinesRaw !== undefined) {
+            const parsed = Number(maxLinesRaw);
+            if (!Number.isFinite(parsed) || parsed <= 0) {
+                console.error('Error: --max-lines must be a positive number.\n');
+                usage();
+                return;
+            }
+            maxLines = Math.floor(parsed);
+        }
+        const { openReadOnly } = await import('./db/read-only.js');
+        const { detectSymbolCycles, findConnectedComponents, clusterSymbols, buildCodebaseSummary, } = await import('./resolution/graph-analysis.js');
+        const db = openReadOnly(dbPath);
+        const opts = { edgeKinds, branch };
+        let result;
+        if (mode === 'cycles') {
+            result = detectSymbolCycles(db, opts);
+        }
+        else if (mode === 'components') {
+            result = findConnectedComponents(db, { ...opts, scope: 'symbol' });
+        }
+        else if (mode === 'clusters') {
+            result = clusterSymbols(db, { ...opts, maxLinesPerCluster: maxLines });
+        }
+        else {
+            result = buildCodebaseSummary(db, { ...opts, maxLinesPerModule: maxLines });
+        }
+        db.close();
+        console.log(JSON.stringify(result, null, 2));
+    }
     else {
         console.error(`Unknown subcommand: ${subcommand}\n`);
         usage();

package/dist/cli.js.map

@@ -1 +1 @@
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package/dist/{lore-server/db.d.ts → db/read-only.d.ts}

@@ -168,6 +168,9 @@ export interface ListResolvedEdgesOptions {
     fileId?: number;
     /** Filter by caller branch. */
     branch?: string;
+    /** Allowlist of resolution methods to include. When set, only edges whose
+     *  `resolution_method` is in this list are returned. */
+    methods?: string[];
     /** Maximum rows to return. Default: 100 000. */
     limit?: number;
 }
@@ -184,6 +187,77 @@ export interface ListResolvedEdgesOptions {
  *  - Defaults to a high limit (100 000) to avoid silent truncation
  */
 export declare function listResolvedEdges(db: Database.Database, options?: ListResolvedEdgesOptions): ResolvedEdge[];
+export interface TypeRefEdge {
+    ref_id: number;
+    symbol_id: number | null;
+    symbol_name: string | null;
+    symbol_kind: string | null;
+    symbol_file_id: number | null;
+    symbol_file_path: string | null;
+    type_id: number | null;
+    type_name: string;
+    type_name_bare: string;
+    type_kind: string | null;
+    type_file_id: number | null;
+    type_file_path: string | null;
+    ref_kind: string;
+    ref_line: number;
+    ref_character: number | null;
+    resolution_method: string;
+}
+export interface ListTypeRefsOptions {
+    /** Only include edges where `type_id` is resolved (non-NULL). Default: false. */
+    resolvedOnly?: boolean;
+    /** Restrict to edges from this file. */
+    fileId?: number;
+    /** Filter by branch. */
+    branch?: string;
+    /** Allowlist of resolution methods to include. */
+    methods?: string[];
+    /** Maximum rows to return. Default: 100 000. */
+    limit?: number;
+}
+/**
+ * Returns type-reference edges from `type_refs`, joining through
+ * `symbols` and `files` to denormalize source/target metadata.
+ */
+export declare function listTypeRefs(db: Database.Database, options?: ListTypeRefsOptions): TypeRefEdge[];
+export interface SymbolRelationshipEdge {
+    ref_id: number;
+    source_symbol_id: number | null;
+    source_name: string | null;
+    source_kind: string | null;
+    source_file_id: number | null;
+    source_file_path: string | null;
+    target_symbol_id: number | null;
+    target_symbol_name: string;
+    target_kind: string | null;
+    target_file_id: number | null;
+    target_file_path: string | null;
+    relationship_type: string;
+    line: number;
+    character: number | null;
+    resolution_method: string;
+}
+export interface ListSymbolRelationshipsOptions {
+    /** Only include edges where `target_symbol_id` is resolved (non-NULL). Default: false. */
+    resolvedOnly?: boolean;
+    /** Restrict to edges from this file. */
+    fileId?: number;
+    /** Filter by branch. */
+    branch?: string;
+    /** Filter by relationship type (e.g. 'extends', 'implements'). */
+    relationshipType?: string;
+    /** Allowlist of resolution methods to include. */
+    methods?: string[];
+    /** Maximum rows to return. Default: 100 000. */
+    limit?: number;
+}
+/**
+ * Returns symbol-relationship edges (extends, implements, etc.) from
+ * `symbol_relationships`, joining through `symbols` and `files`.
+ */
+export declare function listSymbolRelationships(db: Database.Database, options?: ListSymbolRelationshipsOptions): SymbolRelationshipEdge[];
 export interface DocRow {
     id: number;
     path: string;
@@ -439,4 +513,4 @@ export declare function getSymbolCoverageAggregates(db: Database.Database, optio
 }): SymbolCoverageAggregate[];
 /** Return symbol coverage percentages for selected symbol ids from latest coverage run. */
 export declare function getCoveragePercentBySymbolIds(db: Database.Database, symbolIds: number[], branch?: string): Map<number, number | null>;
-//# sourceMappingURL=db.d.ts.map
+//# sourceMappingURL=read-only.d.ts.map