@isaacriehm/cairn-core 0.19.1 → 0.22.0

package/dist/mcp/schemas.d.ts

@@ -24,14 +24,36 @@ export declare const componentGetInput: {
     /** Optional workspace filter (monorepo). Omit for single-app. */
     workspace: z.ZodOptional<z.ZodString>;
 };
+export declare const componentRegisterInput: {
+    /** Repo-relative POSIX path of the component file. */
+    file: z.ZodString;
+    /** The export symbol being registered — the natural key + identity. */
+    export_name: z.ZodString;
+    /** The `@cairn <Name>` value (usually === export_name). */
+    name: z.ZodString;
+    category: z.ZodString;
+    purpose: z.ZodString;
+    aliases: z.ZodDefault<z.ZodArray<z.ZodString>>;
+    /** Owning workspace; omit / "" for single-app. */
+    workspace: z.ZodOptional<z.ZodString>;
+    singleton: z.ZodOptional<z.ZodBoolean>;
+    status: z.ZodOptional<z.ZodString>;
+    uses: z.ZodOptional<z.ZodArray<z.ZodString>>;
+};
+export declare const componentReconfirmInput: {
+    /** Reconfirm a single file's component; omit to sweep every flagged unit. */
+    file: z.ZodOptional<z.ZodString>;
+    /** Hard cap on fresh Haiku calls this run; the rest stay flagged (deferred). */
+    cap: z.ZodOptional<z.ZodNumber>;
+};
 export declare const searchInput: {
     query: z.ZodString;
     scope: z.ZodOptional<z.ZodArray<z.ZodString>>;
     kinds: z.ZodOptional<z.ZodArray<z.ZodEnum<{
         decision: "decision";
         invariant: "invariant";
-        task: "task";
         doc: "doc";
+        task: "task";
         run: "run";
         manifest: "manifest";
     }>>>;
@@ -87,9 +109,9 @@ export declare const resumeInput: {
 export declare const taskCompleteInput: {
     task_id: z.ZodOptional<z.ZodString>;
     outcome: z.ZodEnum<{
-        aborted: "aborted";
         succeeded: "succeeded";
         failed: "failed";
+        aborted: "aborted";
     }>;
     summary: z.ZodOptional<z.ZodString>;
 };
@@ -127,7 +149,7 @@ export declare const retireInvariantInput: {
 };
 export declare const resolveAttentionInput: {
     /**
-     * Item id from the attention skill — DEC-NNNN for a draft, the
+     * Item id from the attention skill — DEC-<hash> for a draft, the
      * baseline finding key (e.g. `BASELINE-stub_catalog_hits-services/auth.ts`)
      * for sensor findings, the event filename for invalidation events.
      *
@@ -278,10 +300,10 @@ export declare const missionAdvanceInput: {
     phase_id: z.ZodString;
     choice: z.ZodEnum<{
         force: "force";
-        drop: "drop";
         exit: "exit";
         not_yet: "not_yet";
         defer: "defer";
+        drop: "drop";
     }>;
     defer_hours: z.ZodOptional<z.ZodNumber>;
 };

package/dist/mcp/schemas.js

@@ -31,6 +31,28 @@ export const componentGetInput = {
     /** Optional workspace filter (monorepo). Omit for single-app. */
     workspace: z.string().optional(),
 };
+export const componentRegisterInput = {
+    /** Repo-relative POSIX path of the component file. */
+    file: z.string().min(1),
+    /** The export symbol being registered — the natural key + identity. */
+    export_name: z.string().min(1),
+    /** The `@cairn <Name>` value (usually === export_name). */
+    name: z.string().min(1),
+    category: z.string().min(1),
+    purpose: z.string().min(1),
+    aliases: z.array(z.string()).default([]),
+    /** Owning workspace; omit / "" for single-app. */
+    workspace: z.string().optional(),
+    singleton: z.boolean().optional(),
+    status: z.string().optional(),
+    uses: z.array(z.string()).optional(),
+};
+export const componentReconfirmInput = {
+    /** Reconfirm a single file's component; omit to sweep every flagged unit. */
+    file: z.string().min(1).optional(),
+    /** Hard cap on fresh Haiku calls this run; the rest stay flagged (deferred). */
+    cap: z.number().int().positive().max(50).optional(),
+};
 // ── Read tools — 3-layer progressive retrieval ─────────────────────────────
 export const searchInput = {
     query: z.string().min(1),
@@ -191,7 +213,7 @@ export const retireInvariantInput = {
 };
 export const resolveAttentionInput = {
     /**
-     * Item id from the attention skill — DEC-NNNN for a draft, the
+     * Item id from the attention skill — DEC-<hash> for a draft, the
      * baseline finding key (e.g. `BASELINE-stub_catalog_hits-services/auth.ts`)
      * for sensor findings, the event filename for invalidation events.
      *

package/dist/mcp/schemas.js.map

@@ -1 +1 @@
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package/dist/mcp/serve.js

@@ -16,6 +16,7 @@ import { resolve } from "node:path";
 import { createContext } from "./context.js";
 import { startMcpServer } from "./server.js";
 import { logger } from "../logger.js";
+import { runMigrations } from "../migrate/index.js";
 import { resolveAnchorRoot } from "../session-start/index.js";
 const log = logger("mcp.serve");
 function parseArgs(argv) {
@@ -52,6 +53,14 @@ function parseArgs(argv) {
 }
 async function main() {
     const args = parseArgs(process.argv.slice(2));
+    // Defensive catch-up: auto-apply safe `.cairn/` migrations on server boot.
+    // No-op on unadopted repos / held lock; never blocks server start.
+    try {
+        await runMigrations({ repoRoot: args.repoRoot });
+    }
+    catch (err) {
+        log.warn({ err: err instanceof Error ? err.message : String(err) }, "boot migration run failed");
+    }
     const ctx = createContext({
         repoRoot: args.repoRoot,
         ...(args.runId !== null ? { runId: args.runId } : {}),

package/dist/mcp/serve.js.map

@@ -1 +1 @@
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package/dist/mcp/server.js

@@ -1,5 +1,4 @@
 import { existsSync } from "node:fs";
-import { join } from "node:path";
 import { McpServer } from "@modelcontextprotocol/sdk/server/mcp.js";
 import { StdioServerTransport } from "@modelcontextprotocol/sdk/server/stdio.js";
 import { logger } from "../logger.js";
@@ -8,6 +7,7 @@ import { isMcpError, mcpError } from "./errors.js";
 import { asMcpResult } from "./result.js";
 import { recordCall } from "./telemetry.js";
 import { allTools } from "./tools/index.js";
+import { cairnDir } from "@isaacriehm/cairn-state";
 const log = logger("mcp.server");
 export async function startMcpServer(opts) {
     const { ctx } = opts;
@@ -15,8 +15,8 @@ export async function startMcpServer(opts) {
     // Finding 2: Unload init tools post-adoption to save context window.
     // Adoption is "complete" if config.yaml exists but init-state.json
     // (the v0.3.5 state machine sentinel) is gone.
-    const isAdopted = existsSync(join(ctx.repoRoot, ".cairn", "config.yaml")) &&
-        !existsSync(join(ctx.repoRoot, ".cairn", "init-state.json"));
+    const isAdopted = existsSync(cairnDir(ctx.repoRoot, "config.yaml")) &&
+        !existsSync(cairnDir(ctx.repoRoot, "init-state.json"));
     for (const tool of allTools) {
         if (isAdopted && tool.name.startsWith("cairn_init_")) {
             continue;

package/dist/mcp/server.js.map

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+{"version":3,"file":"server.js","sourceRoot":"","sources":["../../src/mcp/server.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AAErC,OAAO,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AACpE,OAAO,EAAE,oBAAoB,EAAE,MAAM,2CAA2C,CAAC;AACjF,OAAO,EAAE,MAAM,EAAE,MAAM,cAAc,CAAC;AACtC,OAAO,EAAE,OAAO,EAAE,MAAM,aAAa,CAAC;AAEtC,OAAO,EAAE,UAAU,EAAE,QAAQ,EAAE,MAAM,aAAa,CAAC;AACnD,OAAO,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AAC1C,OAAO,EAAE,UAAU,EAAE,MAAM,gBAAgB,CAAC;AAC5C,OAAO,EAAE,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AAC5C,OAAO,EAAE,QAAQ,EAAE,MAAM,yBAAyB,CAAC;AAEnD,MAAM,GAAG,GAAG,MAAM,CAAC,YAAY,CAAC,CAAC;AAQjC,MAAM,CAAC,KAAK,UAAU,cAAc,CAAC,IAAwB;IAI3D,MAAM,EAAE,GAAG,EAAE,GAAG,IAAI,CAAC;IACrB,MAAM,MAAM,GAAG,IAAI,SAAS,CAAC,EAAE,IAAI,EAAE,WAAW,EAAE,OAAO,EAAE,OAAO,EAAE,CAAC,CAAC;IAEtE,qEAAqE;IACrE,mEAAmE;IACnE,+CAA+C;IAC/C,MAAM,SAAS,GACb,UAAU,CAAC,QAAQ,CAAC,GAAG,CAAC,QAAQ,EAAE,aAAa,CAAC,CAAC;QACjD,CAAC,UAAU,CAAC,QAAQ,CAAC,GAAG,CAAC,QAAQ,EAAE,iBAAiB,CAAC,CAAC,CAAC;IAEzD,KAAK,MAAM,IAAI,IAAI,QAAQ,EAAE,CAAC;QAC5B,IAAI,SAAS,IAAI,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,aAAa,CAAC,EAAE,CAAC;YACrD,SAAS;QACX,CAAC;QAED,MAAM,CAAC,YAAY,CACjB,IAAI,CAAC,IAAI,EACT;YACE,WAAW,EAAE,IAAI,CAAC,WAAW;YAC7B,WAAW,EAAE,IAAI,CAAC,WAAW;SAC9B,EACD,KAAK,EAAE,QAAQ,EAAE,EAAE;YACjB,MAAM,KAAK,GAAG,OAAO,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC;YACtC,IAAI,OAAgB,CAAC;YACrB,IAAI,CAAC;gBACH,OAAO,GAAG,MAAM,IAAI,CAAC,OAAO,CAAC,GAAG,EAAE,QAAiB,CAAC,CAAC;YACvD,CAAC;YAAC,OAAO,GAAG,EAAE,CAAC;gBACb,OAAO,GAAG,QAAQ,CAChB,gBAAgB,EAChB,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,oBAAoB,CAC1D,CAAC;gBACF,GAAG,CAAC,KAAK,CAAC,EAAE,IAAI,EAAE,IAAI,CAAC,IAAI,EAAE,GAAG,EAAE,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,oBAAoB,CAAC,CAAC;YACzE,CAAC;YACD,MAAM,UAAU,GAAG,MAAM,CAAC,OAAO,CAAC,MAAM,CAAC,MAAM,EAAE,GAAG,KAAK,CAAC,GAAG,SAAS,CAAC;YACvE,MAAM,MAAM,GAAG,WAAW,CAAC,OAAO,CAAC,CAAC;YACpC,MAAM,UAAU,GACd,MAAM,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC,EAAE,IAAI,KAAK,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC;YACrE,MAAM,KAAK,GAAG,UAAU,CAAC,OAAO,CAAC,CAAC;YAClC,IAAI,CAAC;gBACH,UAAU,CAAC,GAAG,EAAE;oBACd,EAAE,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;oBAC5B,IAAI,EAAE,IAAI,CAAC,IAAI;oBACf,IAAI,EAAE,QAAQ,IAAI,EAAE;oBACpB,WAAW,EAAE,KAAK,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,IAAI;oBACnC,WAAW,EAAE,UAAU,CAAC,MAAM;oBAC9B,WAAW,EAAE,IAAI,CAAC,KAAK,CAAC,UAAU,GAAG,GAAG,CAAC,GAAG,GAAG;oBAC/C,GAAG,CAAC,KAAK;wBACP,CAAC,CAAC;4BACE,cAAc,EACZ,UAAU,CAAC,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,GAAG,UAAU,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,UAAU;yBACxE;wBACH,CAAC,CAAC,EAAE,CAAC;iBACR,CAAC,CAAC;YACL,CAAC;YAAC,MAAM,CAAC;gBACP,sCAAsC;YACxC,CAAC;YACD,OAAO,MAAM,CAAC;QAChB,CAAC,CACF,CAAC;IACJ,CAAC;IAED,IAAI,IAAI,CAAC,SAAS,KAAK,IAAI,EAAE,CAAC;QAC5B,MAAM,SAAS,GAAG,IAAI,oBAAoB,EAAE,CAAC;QAC7C,MAAM,MAAM,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC;QAChC,GAAG,CAAC,IAAI,CAAC,EAAE,KAAK,EAAE,QAAQ,CAAC,MAAM,EAAE,QAAQ,EAAE,GAAG,CAAC,QAAQ,EAAE,EAAE,+BAA+B,CAAC,CAAC;IAChG,CAAC;IAED,OAAO;QACL,MAAM;QACN,KAAK,EAAE,KAAK,IAAI,EAAE;YAChB,MAAM,MAAM,CAAC,KAAK,EAAE,CAAC;QACvB,CAAC;KACF,CAAC;AACJ,CAAC"}

package/dist/mcp/telemetry.js

@@ -1,10 +1,11 @@
 import { appendFileSync, existsSync, mkdirSync } from "node:fs";
-import { dirname, join } from "node:path";
+import { dirname } from "node:path";
 import { appendTrace } from "../trace/index.js";
+import { cairnDir } from "@isaacriehm/cairn-state";
 export function recordCall(ctx, row) {
     const path = ctx.runId !== undefined
-        ? join(ctx.repoRoot, ".cairn", "runs", "active", ctx.runId, "mcp-calls.jsonl")
-        : join(ctx.repoRoot, ".cairn", "staleness", "mcp-calls.jsonl");
+        ? cairnDir(ctx.repoRoot, "runs", "active", ctx.runId, "mcp-calls.jsonl")
+        : cairnDir(ctx.repoRoot, "staleness", "mcp-calls.jsonl");
     const dir = dirname(path);
     if (!existsSync(dir)) {
         mkdirSync(dir, { recursive: true });

package/dist/mcp/telemetry.js.map

@@ -1 +1 @@
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+{"version":3,"file":"telemetry.js","sourceRoot":"","sources":["../../src/mcp/telemetry.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,cAAc,EAAE,UAAU,EAAE,SAAS,EAAE,MAAM,SAAS,CAAC;AAChE,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AACpC,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAC;AAEhD,OAAO,EAAE,QAAQ,EAAE,MAAM,yBAAyB,CAAC;AAsBnD,MAAM,UAAU,UAAU,CAAC,GAAe,EAAE,GAAiB;IAC3D,MAAM,IAAI,GACR,GAAG,CAAC,KAAK,KAAK,SAAS;QACrB,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,QAAQ,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAG,CAAC,KAAK,EAAE,iBAAiB,CAAC;QACxE,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,QAAQ,EAAE,WAAW,EAAE,iBAAiB,CAAC,CAAC;IAC7D,MAAM,GAAG,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;IAC1B,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE,CAAC;QACrB,SAAS,CAAC,GAAG,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IACtC,CAAC;IACD,cAAc,CAAC,IAAI,EAAE,GAAG,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC;IAEzD,WAAW,CAAC;QACV,EAAE,EAAE,GAAG,CAAC,EAAE;QACV,MAAM,EAAE,KAAK;QACb,IAAI,EAAE,GAAG,CAAC,IAAI;QACd,SAAS,EAAE,GAAG,CAAC,QAAQ;QACvB,UAAU,EAAE,IAAI;QAChB,WAAW,EAAE,GAAG,CAAC,WAAW;QAC5B,EAAE,EAAE,GAAG,CAAC,WAAW,KAAK,IAAI;QAC5B,OAAO,EAAE;YACP,IAAI,EAAE,GAAG,CAAC,IAAI;YACd,WAAW,EAAE,GAAG,CAAC,WAAW;YAC5B,GAAG,CAAC,GAAG,CAAC,cAAc,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,cAAc,EAAE,GAAG,CAAC,cAAc,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;YACnF,GAAG,CAAC,GAAG,CAAC,KAAK,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,MAAM,EAAE,GAAG,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;SAC1D;KACF,CAAC,CAAC;AACL,CAAC"}

package/dist/mcp/tools/component-reconfirm.d.ts

@@ -0,0 +1,7 @@
+import type { ToolDef } from "./types.js";
+interface Input {
+    file?: string;
+    cap?: number;
+}
+export declare const componentReconfirmTool: ToolDef<Input>;
+export {};

package/dist/mcp/tools/component-reconfirm.js

@@ -0,0 +1,39 @@
+import { isGhost } from "@isaacriehm/cairn-state";
+import { runComponentReconfirm } from "../../components/reconfirm.js";
+import { mcpError } from "../errors.js";
+import { componentReconfirmInput } from "../schemas.js";
+/**
+ * Re-confirm headerless components the freshness gate flagged as
+ * identity-changed (§3.8.1). Ghost-only. Runs the narrow **Haiku** yes/no
+ * judge ("does the stored category/purpose still fit?") over flagged entries —
+ * "fits" clears the flag, "stale" leaves it for the operator to re-register.
+ * Verdicts are cached on the body fingerprint and the run is hard-capped, so a
+ * sweep can't runaway-burn quota. This is the deferred, quota-expected reclassify
+ * pass — never the hot edit path. Committed projects have no headerless registry,
+ * so the tool refuses there.
+ */
+async function handler(ctx, input) {
+    if (!isGhost(ctx.repoRoot)) {
+        return mcpError("NOT_ALLOWED", "cairn_component_reconfirm is the ghost-mode reclassify pass. Committed projects carry no headerless registry — re-confirm a component by editing its in-file `@cairn` header instead.");
+    }
+    const res = await runComponentReconfirm({
+        repoRoot: ctx.repoRoot,
+        ...(input.file !== undefined ? { onlyFile: input.file } : {}),
+        ...(input.cap !== undefined ? { cap: input.cap } : {}),
+    });
+    return {
+        considered: res.considered,
+        cleared: res.cleared,
+        still_flagged: res.stillStale + res.deferred,
+        deferred: res.deferred,
+        haiku_calls: res.haikuCalls,
+        cache_hits: res.cacheHits,
+    };
+}
+export const componentReconfirmTool = {
+    name: "cairn_component_reconfirm",
+    description: "Ghost mode only. Re-confirm components the freshness gate flagged as identity-changed: a narrow Haiku judge decides whether each one's stored category/purpose still fits its current code. 'fits' clears the flag; 'stale' leaves it for you to re-register via cairn_component_register. Pass `file` to reconfirm one unit, or omit to sweep all flagged. `cap` bounds Haiku calls per run (rest deferred). Verdicts cache on the body fingerprint. Refuses in committed mode.",
+    inputSchema: componentReconfirmInput,
+    handler,
+};
+//# sourceMappingURL=component-reconfirm.js.map

package/dist/mcp/tools/component-reconfirm.js.map

@@ -0,0 +1 @@
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package/dist/mcp/tools/component-register.d.ts

@@ -0,0 +1,15 @@
+import type { ToolDef } from "./types.js";
+interface Input {
+    file: string;
+    export_name: string;
+    name: string;
+    category: string;
+    purpose: string;
+    aliases: string[];
+    workspace?: string;
+    singleton?: boolean;
+    status?: string;
+    uses?: string[];
+}
+export declare const componentRegisterTool: ToolDef<Input>;
+export {};

package/dist/mcp/tools/component-register.js

@@ -0,0 +1,65 @@
+import { existsSync, readFileSync } from "node:fs";
+import { join } from "node:path";
+import { bodyContentHash, extractExportNames, isGhost, profileForFile, registerComponentEntry, } from "@isaacriehm/cairn-state";
+import { mcpError } from "../errors.js";
+import { componentRegisterInput } from "../schemas.js";
+/**
+ * Register one component into the out-of-repo headerless registry (§3.8.1).
+ * This is the ghost write path that replaces the `@cairn` annotator's source
+ * `Edit` — the classification lands in `cairnHome/ground/components/
+ * registry.yaml`, keyed (workspace, file, export), and the client source file
+ * is never touched. Committed projects register via the in-file header, so the
+ * tool refuses there to keep the one-SoT-per-mode rule clean.
+ */
+async function handler(ctx, input) {
+    if (!isGhost(ctx.repoRoot)) {
+        return mcpError("NOT_ALLOWED", "cairn_component_register is the ghost-mode write path. Committed projects register a component by its in-file `@cairn <Name>` header (add the header / run the annotator), not via this tool.");
+    }
+    const abs = join(ctx.repoRoot, input.file);
+    if (!existsSync(abs)) {
+        return mcpError("FILE_NOT_FOUND", `${input.file} does not exist under the repo root — register an existing component file.`);
+    }
+    let source;
+    try {
+        source = readFileSync(abs, "utf8");
+    }
+    catch (err) {
+        return mcpError("INTERNAL_ERROR", `could not read ${input.file}: ${err instanceof Error ? err.message : String(err)}`);
+    }
+    const entry = {
+        workspace: input.workspace ?? "",
+        file: input.file,
+        export: input.export_name,
+        name: input.name,
+        category: input.category,
+        purpose: input.purpose,
+        aliases: input.aliases,
+        uses: input.uses ?? [],
+        // v1 fingerprint: whole-file body hash (one component per file is the UI
+        // convention, so the file body is the component span). The export-span hash
+        // is a later precision refinement.
+        anchor: { content_hash: bodyContentHash(source) },
+        // Identity snapshot — the freshness gate (§3.8.1) compares the file's
+        // future exports/shape against these to tell an internal refactor from a
+        // genuine identity change without ever calling the LLM.
+        exports: extractExportNames(source, input.file),
+        unit_shaped: profileForFile(input.file)?.isUnitShaped(source, input.file) ?? false,
+        ...(input.singleton !== undefined ? { singleton: input.singleton } : {}),
+        ...(input.status !== undefined ? { status: input.status } : {}),
+    };
+    registerComponentEntry(ctx.repoRoot, entry);
+    return {
+        registered: true,
+        workspace: entry.workspace,
+        file: entry.file,
+        export: entry.export,
+        name: entry.name,
+    };
+}
+export const componentRegisterTool = {
+    name: "cairn_component_register",
+    description: "Ghost mode only. Register a component into the out-of-repo headerless registry so it joins the store WITHOUT writing a `@cairn` header into client source. Pass the file, the export symbol, and the classification (name/category/purpose/aliases). Use this to resolve an `unregistered unit` finding. Committed projects use the in-file header instead and the tool refuses there.",
+    inputSchema: componentRegisterInput,
+    handler,
+};
+//# sourceMappingURL=component-register.js.map

package/dist/mcp/tools/component-register.js.map

@@ -0,0 +1 @@
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package/dist/mcp/tools/decision-get.js

@@ -56,8 +56,8 @@ async function handler(ctx, input) {
         }
     }
     // Suggest near-matches so an AI that hallucinated a sequential id
-    // (`DEC-0001`, `DEC-0002`, etc. — the bug-mine top error) can pick the
-    // right one on the retry. Real ids are `DEC-<7-hex>` content-addressed.
+    // (`DEC-0001`, `DEC-0002`, etc.) can pick the right one on the retry.
+    // Real ids are `DEC-<7-hex>` content-addressed.
     const allIds = collectExistingIds(searchDirs);
     return mcpError("DECISION_NOT_FOUND", `No decision with id ${input.id}. Real ids are content-addressed (DEC-<7-hex>); sequential placeholders like DEC-0001 don't exist. Try \`cairn_search\` or \`cairn_in_scope\` to find the right id.`, allIds.length > 0 ? { available_ids_sample: allIds.slice(0, 10) } : undefined);
 }

package/dist/mcp/tools/decision-get.js.map

@@ -1 +1 @@
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+{"version":3,"file":"decision-get.js","sourceRoot":"","sources":["../../../src/mcp/tools/decision-get.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,WAAW,EAAE,YAAY,EAAE,MAAM,SAAS,CAAC;AAChE,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAEjC,OAAO,EAAE,YAAY,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAC;AACzE,OAAO,EAAE,mBAAmB,EAAE,MAAM,yBAAyB,CAAC;AAC9D,OAAO,EAAE,QAAQ,EAAE,MAAM,cAAc,CAAC;AACxC,OAAO,EAAE,gBAAgB,EAAE,MAAM,eAAe,CAAC;AAOjD,KAAK,UAAU,OAAO,CAAC,GAAe,EAAE,KAAY;IAClD,kEAAkE;IAClE,sEAAsE;IACtE,mDAAmD;IACnD,IAAI,KAAK,CAAC,EAAE,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,CAAC;QAChC,OAAO,QAAQ,CACb,qBAAqB,EACrB,GAAG,KAAK,CAAC,EAAE,0DAA0D,KAAK,CAAC,EAAE,gBAAgB,CAC9F,CAAC;IACJ,CAAC;IACD,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,CAAC;QACjC,OAAO,QAAQ,CACb,mBAAmB,EACnB,MAAM,KAAK,CAAC,EAAE,0DAA0D,CACzE,CAAC;IACJ,CAAC;IACD,MAAM,GAAG,GAAG,YAAY,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;IACvC,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE,CAAC;QACrB,OAAO,QAAQ,CAAC,oBAAoB,EAAE,6BAA6B,GAAG,EAAE,CAAC,CAAC;IAC5E,CAAC;IACD,oEAAoE;IACpE,mEAAmE;IACnE,oEAAoE;IACpE,mDAAmD;IACnD,MAAM,QAAQ,GAAG,IAAI,CAAC,GAAG,EAAE,QAAQ,CAAC,CAAC;IACrC,MAAM,UAAU,GAAG,CAAC,GAAG,EAAE,QAAQ,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,CAAC;IAChE,KAAK,MAAM,SAAS,IAAI,UAAU,EAAE,CAAC;QACnC,MAAM,KAAK,GAAG,WAAW,CAAC,SAAS,EAAE,EAAE,aAAa,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,EAAE,CAAC,CAAC;QAChF,KAAK,MAAM,CAAC,IAAI,KAAK,EAAE,CAAC;YACtB,IAAI,CAAC,CAAC,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAC,KAAK,CAAC;gBAAE,SAAS;YACrD,MAAM,GAAG,GAAG,IAAI,CAAC,SAAS,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC;YACpC,MAAM,MAAM,GAAG,gBAAgB,CAAC,YAAY,CAAC,GAAG,EAAE,MAAM,CAAC,CAAC,CAAC;YAC3D,MAAM,EAAE,GAAG,mBAAmB,CAAC,SAAS,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC;YAC7D,IAAI,CAAC,EAAE,CAAC,OAAO;gBAAE,SAAS;YAC1B,IAAI,EAAE,CAAC,IAAI,CAAC,EAAE,KAAK,KAAK,CAAC,EAAE;gBAAE,SAAS;YACtC,OAAO;gBACL,EAAE,EAAE,EAAE,CAAC,IAAI,CAAC,EAAE;gBACd,KAAK,EAAE,EAAE,CAAC,IAAI,CAAC,KAAK;gBACpB,MAAM,EAAE,EAAE,CAAC,IAAI,CAAC,MAAM;gBACtB,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,WAAW,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,WAAW,EAAE,EAAE,CAAC,IAAI,CAAC,WAAW,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;gBAClF,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,UAAU,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,UAAU,EAAE,EAAE,CAAC,IAAI,CAAC,UAAU,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;gBAC/E,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,aAAa,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,aAAa,EAAE,EAAE,CAAC,IAAI,CAAC,aAAa,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;gBACxF,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,UAAU,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,UAAU,EAAE,EAAE,CAAC,IAAI,CAAC,UAAU,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;gBAC/E,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,UAAU,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,UAAU,EAAE,EAAE,CAAC,IAAI,CAAC,UAAU,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;gBAC/E,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,iBAAiB,KAAK,SAAS;oBACzC,CAAC,CAAC,EAAE,iBAAiB,EAAE,EAAE,CAAC,IAAI,CAAC,iBAAiB,EAAE;oBAClD,CAAC,CAAC,EAAE,CAAC;gBACP,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,kBAAkB,KAAK,SAAS;oBAC1C,CAAC,CAAC,EAAE,kBAAkB,EAAE,EAAE,CAAC,IAAI,CAAC,kBAAkB,EAAE;oBACpD,CAAC,CAAC,EAAE,CAAC;gBACP,aAAa,EAAE,MAAM,CAAC,IAAI;aAC3B,CAAC;QACJ,CAAC;IACH,CAAC;IACD,kEAAkE;IAClE,sEAAsE;IACtE,gDAAgD;IAChD,MAAM,MAAM,GAAG,kBAAkB,CAAC,UAAU,CAAC,CAAC;IAC9C,OAAO,QAAQ,CACb,oBAAoB,EACpB,uBAAuB,KAAK,CAAC,EAAE,qKAAqK,EACpM,MAAM,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,oBAAoB,EAAE,MAAM,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,SAAS,CAC9E,CAAC;AACJ,CAAC;AAED,SAAS,kBAAkB,CAAC,IAAc;IACxC,MAAM,GAAG,GAAa,EAAE,CAAC;IACzB,KAAK,MAAM,CAAC,IAAI,IAAI,EAAE,CAAC;QACrB,IAAI,CAAC;YACH,KAAK,MAAM,CAAC,IAAI,WAAW,CAAC,CAAC,EAAE,EAAE,aAAa,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC;gBAC1E,IAAI,CAAC,CAAC,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAC,KAAK,CAAC;oBAAE,SAAS;gBACrD,MAAM,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,0BAA0B,CAAC,IAAI,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,iCAAiC,CAAC,CAAC;gBACtG,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;oBAAE,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;YAChC,CAAC;QACH,CAAC;QAAC,MAAM,CAAC;YACP,8CAA8C;QAChD,CAAC;IACH,CAAC;IACD,OAAO,GAAG,CAAC,IAAI,EAAE,CAAC;AACpB,CAAC;AAED,MAAM,CAAC,MAAM,eAAe,GAAmB;IAC7C,IAAI,EAAE,oBAAoB;IAC1B,WAAW,EACT,oiBAAoiB;IACtiB,WAAW,EAAE,gBAAgB;IAC7B,OAAO;CACR,CAAC"}

package/dist/mcp/tools/index.js

@@ -1,10 +1,9 @@
 import { attentionDedupTool } from "./attention-dedup.js";
-import { attentionServeTool } from "./attention-serve.js";
-import { attentionWaitTool } from "./attention-wait.js";
 import { bootstrapRetryTool } from "./bootstrap-retry.js";
-import { bulkAcceptAttentionTool } from "./bulk-accept-attention.js";
 import { canonicalForTopicTool } from "./canonical-for-topic.js";
 import { componentGetTool } from "./component-get.js";
+import { componentRegisterTool } from "./component-register.js";
+import { componentReconfirmTool } from "./component-reconfirm.js";
 import { componentsInScopeTool } from "./components-in-scope.js";
 import { decisionGetTool } from "./decision-get.js";
 import { inScopeTool } from "./in-scope.js";
@@ -44,6 +43,9 @@ export const allTools = [
     // Write — entity retirement (the OUT path)
     retireDecisionTool,
     retireInvariantTool,
+    // Write — headerless component registry (ghost §3.8.1)
+    componentRegisterTool,
+    componentReconfirmTool,
     taskCreateTool,
     taskCompleteTool,
     taskReopenTool,
@@ -52,10 +54,7 @@ export const allTools = [
     resumeTool,
     // Write — plugin-era attention queue
     resolveAttentionTool,
-    bulkAcceptAttentionTool,
     attentionDedupTool,
-    attentionServeTool,
-    attentionWaitTool,
     // Write — bootstrap recovery (replaces CLI exposure in BOOTSTRAP_REQUIRED)
     bootstrapRetryTool,
     // Write — init pipeline (v0.7.2 single-umbrella surface)

package/dist/mcp/tools/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/mcp/tools/index.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,kBAAkB,EAAE,MAAM,sBAAsB,CAAC;AAC1D,OAAO,EAAE,kBAAkB,EAAE,MAAM,sBAAsB,CAAC;AAC1D,OAAO,EAAE,qBAAqB,EAAE,MAAM,0BAA0B,CAAC;AACjE,OAAO,EAAE,gBAAgB,EAAE,MAAM,oBAAoB,CAAC;AACtD,OAAO,EAAE,qBAAqB,EAAE,MAAM,yBAAyB,CAAC;AAChE,OAAO,EAAE,sBAAsB,EAAE,MAAM,0BAA0B,CAAC;AAClE,OAAO,EAAE,qBAAqB,EAAE,MAAM,0BAA0B,CAAC;AACjE,OAAO,EAAE,eAAe,EAAE,MAAM,mBAAmB,CAAC;AACpD,OAAO,EAAE,WAAW,EAAE,MAAM,eAAe,CAAC;AAC5C,OAAO,EACL,cAAc,EACd,WAAW,GACZ,MAAM,kBAAkB,CAAC;AAC1B,OAAO,EAAE,gBAAgB,EAAE,MAAM,oBAAoB,CAAC;AACtD,OAAO,EAAE,sBAAsB,EAAE,MAAM,2BAA2B,CAAC;AACnE,OAAO,EAAE,cAAc,EAAE,MAAM,kBAAkB,CAAC;AAClD,OAAO,EAAE,oBAAoB,EAAE,MAAM,yBAAyB,CAAC;AAC/D,OAAO,EAAE,kBAAkB,EAAE,MAAM,sBAAsB,CAAC;AAC1D,OAAO,EAAE,iBAAiB,EAAE,MAAM,qBAAqB,CAAC;AACxD,OAAO,EAAE,iBAAiB,EAAE,MAAM,qBAAqB,CAAC;AACxD,OAAO,EAAE,uBAAuB,EAAE,MAAM,4BAA4B,CAAC;AACrE,OAAO,EAAE,sBAAsB,EAAE,MAAM,4BAA4B,CAAC;AACpE,OAAO,EAAE,gBAAgB,EAAE,MAAM,oBAAoB,CAAC;AACtD,OAAO,EAAE,kBAAkB,EAAE,MAAM,sBAAsB,CAAC;AAC1D,OAAO,EAAE,kBAAkB,EAAE,mBAAmB,EAAE,MAAM,oBAAoB,CAAC;AAC7E,OAAO,EAAE,oBAAoB,EAAE,MAAM,wBAAwB,CAAC;AAC9D,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AACzC,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AACzC,OAAO,EAAE,gBAAgB,EAAE,MAAM,oBAAoB,CAAC;AACtD,OAAO,EAAE,cAAc,EAAE,MAAM,kBAAkB,CAAC;AAClD,OAAO,EAAE,qBAAqB,EAAE,MAAM,0BAA0B,CAAC;AACjE,OAAO,EAAE,cAAc,EAAE,MAAM,kBAAkB,CAAC;AAElD,MAAM,CAAC,MAAM,QAAQ,GAAqB;IACxC,yBAAyB;IACzB,eAAe;IACf,qBAAqB;IACrB,gBAAgB;IAChB,WAAW;IACX,4BAA4B;IAC5B,qBAAqB;IACrB,gBAAgB;IAChB,4BAA4B;IAC5B,UAAU;IACV,QAAQ;IACR,kBAAkB;IAClB,2CAA2C;IAC3C,kBAAkB;IAClB,mBAAmB;IACnB,uDAAuD;IACvD,qBAAqB;IACrB,sBAAsB;IACtB,cAAc;IACd,gBAAgB;IAChB,cAAc;IACd,qBAAqB;IACrB,sBAAsB;IACtB,UAAU;IACV,qCAAqC;IACrC,oBAAoB;IACpB,kBAAkB;IAClB,2EAA2E;IAC3E,kBAAkB;IAClB,yDAAyD;IACzD,cAAc;IACd,WAAW;IACX,oCAAoC;IACpC,gBAAgB;IAChB,sBAAsB;IACtB,cAAc;IACd,oBAAoB;IACpB,kBAAkB;IAClB,iBAAiB;IACjB,iBAAiB;IACjB,uBAAuB;IACvB,sBAAsB;CACvB,CAAC"}

package/dist/mcp/tools/init-phases.d.ts

@@ -42,6 +42,8 @@ interface PhaseRunInput {
     answer?: string;
 }
 interface ResumeToolInput {
+    /** When true, register the repo ghost before resolving the next phase. */
+    ghost?: boolean;
 }
 export declare const initRunTool: ToolDef<PhaseRunInput>;
 export declare const initResumeTool: ToolDef<ResumeToolInput>;

package/dist/mcp/tools/init-phases.js

@@ -35,7 +35,8 @@
  * phase outputs — a single bad call could nuke a 90KB mapper run.
  */
 import { z } from "zod";
-import { PHASE_IDS, clearPhaseState, clearProgress, freshPhaseState, readPhaseState, resumePhases, runPhase1Detect, runPhase2Walker, runPhase3Mapper, runPhase4Seed, runPhase5Preflight, runPhase6Brand, runPhase7TopicIndex, runPhase8DocsIngest, runPhase9aWalker, runPhase9bCurate, runPhase9cEmit, runPhase9dCompWalk, runPhase9eCompAnnotate, runPhase9fCompEmit, runPhase10RulesMerge, runPhase11Baseline, runPhase12Strip, runPhase13Multidev, writePhaseState, writeProgress, } from "../../init/index.js";
+import { registerGhostRepo } from "@isaacriehm/cairn-state";
+import { PHASE_IDS, clearPhaseState, clearProgress, freshPhaseState, readPhaseState, resumePhases, runPhase1Detect, runPhase2Walker, runPhase3Mapper, runPhase4Seed, runPhase5Preflight, runPhase6Brand, runPhase7TopicIndex, runPhase8DocsIngest, runPhase9aWalker, runPhase9bCurate, runPhase9cEmit, runPhase9dCompWalk, runPhase9eCompAnnotate, runPhase9fCompEmit, runPhase10RulesMerge, runPhase11Baseline, runPhase13Multidev, writePhaseState, writeProgress, } from "../../init/index.js";
 import { mcpError } from "../errors.js";
 const phaseIdEnum = z.enum(PHASE_IDS);
 const phaseStateSchema = z.object({
@@ -57,7 +58,16 @@ const phaseRunInput = {
     // into state.answer before invoking the phase runner.
     answer: z.string().optional(),
 };
-const initResumeInput = {};
+const initResumeInput = {
+    // Ghost adoption — register this repo as ghost BEFORE the pipeline writes
+    // its first byte. The cairn-adopt skill passes this on the very first
+    // resume call (after the operator picks `ghost` at the top of adoption) so
+    // the fresh init-state, the Phase 4 seed, and every later writer resolve to
+    // the out-of-repo home. Idempotent on a mid-adoption resume (the registry
+    // entry persists; re-registering rewrites the same record). Mirrors the CLI
+    // `cairn init --ghost` → `RunInitArgs.ghost`. See ghost-mode design
+    ghost: z.boolean().optional(),
+};
 const RUNNERS = {
     "1-detect": runPhase1Detect,
     "2-walker": runPhase2Walker,
@@ -75,7 +85,6 @@ const RUNNERS = {
     "9f-comp-emit": runPhase9fCompEmit,
     "10-rules-merge": runPhase10RulesMerge,
     "11-baseline": runPhase11Baseline,
-    "12-strip": runPhase12Strip,
     "13-multidev": runPhase13Multidev,
 };
 function toSlim(result) {
@@ -169,9 +178,16 @@ function makePhaseRunTool() {
 function makeResumeTool() {
     return {
         name: "cairn_init_resume",
-        description: "Read the on-disk init state for the current repo and return the next phase to invoke. The cairn-adopt skill calls this once at the start of the pipeline (and after any operator interruption) to find where to pick up. Returns { status: 'ready' | 'done', nextPhase: PhaseId | null, repoRoot }. For a fresh start (no `.cairn/init-state.json`), the tool persists a fresh PhaseState to disk so the very next `cairn_init_run` call can read it back without the skill having to thread state through tool arguments.",
+        description: "Read the on-disk init state for the current repo and return the next phase to invoke. The cairn-adopt skill calls this once at the start of the pipeline (and after any operator interruption) to find where to pick up. Returns { status: 'ready' | 'done', nextPhase: PhaseId | null, repoRoot }. For a fresh start (no `.cairn/init-state.json`), the tool persists a fresh PhaseState to disk so the very next `cairn_init_run` call can read it back without the skill having to thread state through tool arguments. Pass `ghost: true` ONLY on the first call of a fresh adoption when the operator chose ghost mode — it registers the repo as ghost before any state is written, so the whole pipeline (state file, Phase 4 seed, git hooks) resolves to the out-of-repo home and nothing Cairn-shaped touches the client tree.",
         inputSchema: initResumeInput,
-        handler: async (ctx) => {
+        handler: async (ctx, input) => {
+            // Ghost registration must precede resumePhases: resume seeds a fresh
+            // PhaseState to disk via `cairnDir`, which only relocates out-of-repo
+            // once the registry entry exists. Register first → fresh state lands
+            // out-of-repo. Idempotent if already ghost-registered.
+            if (input.ghost === true) {
+                registerGhostRepo(ctx.repoRoot);
+            }
             const report = resumePhases(ctx.repoRoot);
             // For a fresh start, ensure state.repoRoot matches ctx.repoRoot
             // (resumePhases uses freshPhaseState(ctx.repoRoot) for this case).

package/dist/mcp/tools/init-phases.js.map

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package/dist/mcp/tools/mission-advance.d.ts

@@ -5,10 +5,9 @@ import type { ToolDef } from "./types.js";
  * force) or when the parent mission closes — keeping a stale marker
  * around suppresses the prompt for a phase that no longer needs it.
  *
- * Caught in bug-mine: a deferred phase that auto-advanced 53 min after
- * the operator picked `not_yet` left the marker on disk, suppressing
- * future phase-ready prompts on entirely different missions until the
- * 24h expiry rolled past.
+ * A stale marker left after a deferred phase auto-advances would
+ * otherwise suppress phase-ready prompts on unrelated missions until
+ * the 24h expiry rolled past.
  */
 export declare function clearMissionPhaseDeferIfMatches(repoRoot: string, match: {
     missionId: string;