@iowarp/clio-coder 0.4.6 → 0.4.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (657) hide show
  1. package/.claude-plugin/marketplace.json +283 -0
  2. package/CHANGELOG.md +50 -0
  3. package/CONTRIBUTING.md +102 -29
  4. package/NOTICE +8 -0
  5. package/README.md +37 -5
  6. package/dist/{acp-UVEVWSDL.js → acp-W3Y3TRHD.js} +12 -12
  7. package/dist/{agents-VWY37DTK.js → agents-J4ICNLQ3.js} +52 -52
  8. package/dist/assets/codewiki.json +1 -1
  9. package/dist/assets/tui-notices/get-east-asian-width-LICENSE +9 -0
  10. package/dist/assets/tui-notices/marked-LICENSE +44 -0
  11. package/dist/assets/tui-notices/pi-tui-LICENSE +21 -0
  12. package/dist/{auth-PCV2XQDV.js → auth-X2UJUMOC.js} +24 -24
  13. package/dist/{builtins-PD652MTK.js → builtins-XLXWWSRF.js} +6 -6
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  109. package/dist/{chunk-PWWSIB2A.js → chunk-ZGIGW4ZG.js} +5 -5
  110. package/dist/cli/index.js +34 -36
  111. package/dist/{clio-QQCMTUZE.js → clio-L2P7S2R2.js} +9 -9
  112. package/dist/{code-nav-GUPM6766.js → code-nav-B5LNX4KU.js} +25 -25
  113. package/dist/{components-TNIKXCBH.js → components-63MMQKUT.js} +6 -6
  114. package/dist/{config-IIM7YOD3.js → config-YXARKGTX.js} +70 -67
  115. package/dist/{configure-4ZM5HWJX.js → configure-LMVQJ46J.js} +47 -35
  116. package/dist/{context-OL5P3HEP.js → context-7HJEWTTP.js} +87 -44
  117. package/dist/{context-44BZLJ3J.js → context-XSZKKFBW.js} +14 -14
  118. package/dist/{context-AIDVQKMW.js → context-YG2LZDYZ.js} +60 -58
  119. package/dist/{context-clear-OQV76MYP.js → context-clear-AC5NXHM2.js} +57 -55
  120. package/dist/{context-index-HP2JFUWA.js → context-index-KKTPRV5G.js} +3 -3
  121. package/dist/{context-map-INTXD54D.js → context-map-T7ROR5D5.js} +4 -4
  122. package/dist/{context-working-set-ZUW3EGLS.js → context-working-set-F4Q4J3NS.js} +12 -10
  123. package/dist/{detail-UXPWRANG.js → detail-H73BEF2N.js} +58 -56
  124. package/dist/{dispatch-runner-P3ZW6G77.js → dispatch-runner-3RY5FSJC.js} +74 -72
  125. package/dist/{doctor-JJVGPZWT.js → doctor-EQYJOGUG.js} +44 -30
  126. package/dist/{eval-V2RTN3UH.js → eval-4P7O6CCE.js} +109 -46
  127. package/dist/{evidence-35PYWGSO.js → evidence-D6GUSYJW.js} +57 -55
  128. package/dist/{evidence-CIGGKI6J.js → evidence-O76QF7TZ.js} +62 -59
  129. package/dist/{evolve-33SM3NJP.js → evolve-H47BCETS.js} +58 -56
  130. package/dist/{extensions-YVRHX6ZI.js → extensions-NNL3ZOCU.js} +98 -20
  131. package/dist/{fleet-LFO7SIPC.js → fleet-KMNS6NOM.js} +106 -99
  132. package/dist/{fleet-commands-RLK72GU3.js → fleet-commands-DOWSYCBX.js} +14 -14
  133. package/dist/{fleet-decisions-3SBSCTCW.js → fleet-decisions-S3PTZV2D.js} +9 -9
  134. package/dist/{fleet-graph-JZIBCGMW.js → fleet-graph-F2DE2TME.js} +26 -24
  135. package/dist/{fleet-inspect-2L5YGGZJ.js → fleet-inspect-EN2Q6IVB.js} +60 -57
  136. package/dist/{fleet-preflight-QRSHIIDE.js → fleet-preflight-FRLETDD3.js} +3 -3
  137. package/dist/{fleet-validate-LIAVKDUU.js → fleet-validate-B2XDLS57.js} +28 -29
  138. package/dist/{fleet-verify-JIK3OQZR.js → fleet-verify-4JKUWGJ7.js} +57 -55
  139. package/dist/{fleet-view-IWHYGQKK.js → fleet-view-BHJFW26B.js} +60 -57
  140. package/dist/{init-NJEDOTQW.js → init-XAT5N5YM.js} +79 -74
  141. package/dist/interop-FVECHFKG.js +246 -0
  142. package/dist/{inventory-74UL7UHU.js → inventory-7KFQGLCV.js} +60 -57
  143. package/dist/library-NY2XOT75.js +492 -0
  144. package/dist/library-QAPAO23R.js +306 -0
  145. package/dist/library-import-5Y6MAS3R.js +183 -0
  146. package/dist/library-inventory-JT6HWITQ.js +56 -0
  147. package/dist/library-validation-EQUH25DC.js +42 -0
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  149. package/dist/{models-D4YDIQZQ.js → models-MASFJ6Y2.js} +48 -36
  150. package/dist/{monitor-NKVD55HX.js → monitor-YMP4NXJJ.js} +64 -61
  151. package/dist/{orchestrator-I6OATVPK.js → orchestrator-AFQRRTEI.js} +3685 -1841
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  159. package/dist/{share-NPZZMUXG.js → share-EZ6ERBMH.js} +31 -28
  160. package/dist/skills-BTVVNYVM.js +100 -0
  161. package/dist/{skills-eval-J5TCKSJA.js → skills-eval-UY34MNK7.js} +110 -72
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  180. package/dist/worker/entry.js +283 -76
  181. package/docs/README.md +43 -0
  182. package/docs/architecture/architecture.md +8 -7
  183. package/docs/architecture/artifact-versions.md +3 -3
  184. package/docs/architecture/context-engine.md +35 -1
  185. package/docs/architecture/library.md +32 -0
  186. package/docs/architecture/middleware-and-components.md +1 -1
  187. package/docs/architecture/model-catalog.md +21 -1
  188. package/docs/architecture/pi-boundary.md +18 -0
  189. package/docs/architecture/prompt-envelope-and-tools.md +5 -5
  190. package/docs/architecture/safety-model.md +21 -2
  191. package/docs/architecture/session-lifecycle.md +12 -1
  192. package/docs/architecture/tui-design.md +108 -9
  193. package/docs/architecture/worker-context.md +106 -0
  194. package/docs/guide/authoring-plugins.md +160 -0
  195. package/docs/guide/built-in-agents.md +5 -5
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  210. package/docs/guide/skills-marketplace.md +35 -72
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  220. package/evals/scalar-decision-machinery.ts +1 -1
  221. package/examples/extensions/README.md +67 -0
  222. package/examples/extensions/lab-status/clio-coder-extension.json +14 -0
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  225. package/examples/extensions/measurements/clio-coder-extension.json +28 -0
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  247. package/library/_authoring/templates/skill/plugin.json +23 -0
  248. package/library/agents/README.md +7 -0
  249. package/library/fleets/README.md +7 -0
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  251. package/library/plugins/materio/ai.iowarp.clio/agents/materio-lab-definer.md +208 -0
  252. package/library/plugins/materio/ai.iowarp.clio/agents/materio-literature-reviewer.md +308 -0
  253. package/library/plugins/materio/ai.iowarp.clio/agents/materio-research-explorer.md +249 -0
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  257. package/library/plugins/materio/ai.iowarp.clio/fleets/materio-execute-task.md +50 -0
  258. package/library/plugins/materio/ai.iowarp.clio/prompts/materio/add-task.md +66 -0
  259. package/library/plugins/materio/ai.iowarp.clio/prompts/materio/archive-task.md +65 -0
  260. package/library/plugins/materio/ai.iowarp.clio/prompts/materio/checkpoint.md +26 -0
  261. package/library/plugins/materio/ai.iowarp.clio/prompts/materio/define-research-tasks.md +230 -0
  262. package/library/plugins/materio/ai.iowarp.clio/prompts/materio/define-virtual-lab.md +181 -0
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  583. package/src/interactive/prompt-source-label.ts +21 -0
  584. package/src/interactive/renderers/reference-card.ts +35 -0
  585. package/src/interactive/renderers/worker-entry.ts +35 -3
  586. package/src/interactive/slash-autocomplete.ts +99 -1
  587. package/src/interactive/slash-commands.ts +390 -67
  588. package/src/interactive/slash-spec.ts +0 -1
  589. package/src/interactive/terminal-lease.ts +44 -12
  590. package/src/interactive/turn-queues.ts +8 -7
  591. package/src/interactive/turn-runtime.ts +1 -1
  592. package/src/interactive/view/view-overlay.ts +19 -14
  593. package/src/interactive/welcome-dashboard.ts +525 -408
  594. package/src/tools/bootstrap.ts +8 -0
  595. package/src/tools/builtin-tool-catalog.ts +7 -2
  596. package/src/tools/context/index.ts +58 -5
  597. package/src/tools/context/library.ts +465 -0
  598. package/src/tools/context/surface.ts +20 -6
  599. package/src/tools/core-bootstrap.ts +3 -0
  600. package/src/tools/dispatch-admission.ts +24 -1
  601. package/src/tools/dispatch-arguments.ts +8 -0
  602. package/src/tools/dispatch-plan.ts +32 -0
  603. package/src/tools/dispatch-schema.ts +31 -1
  604. package/src/tools/dispatch-types.ts +3 -0
  605. package/src/tools/dispatch.ts +1 -1
  606. package/src/tools/harness-extensions.ts +169 -0
  607. package/src/tools/observation.ts +4 -0
  608. package/src/tools/policy.ts +7 -1
  609. package/src/tools/registry.ts +19 -1
  610. package/src/tools/worker-evidence.ts +5 -0
  611. package/src/worker/context-seed.ts +192 -0
  612. package/src/worker/entry.ts +1 -0
  613. package/src/worker/spec-contract.ts +8 -1
  614. package/dist/chunk-3UW3KU4A.js +0 -21
  615. package/dist/chunk-536HXRFE.js +0 -1257
  616. package/dist/chunk-B3MOMLJ4.js +0 -433
  617. package/dist/chunk-CXQ37WJH.js +0 -45
  618. package/dist/chunk-KTFSFCVN.js +0 -46
  619. package/dist/chunk-QCOV5DFY.js +0 -911
  620. package/dist/chunk-QRFXEO6Y.js +0 -17
  621. package/dist/chunk-VAHLPXPY.js +0 -399
  622. package/dist/interop-RVCAYECG.js +0 -115
  623. package/dist/library-CTKZA7K3.js +0 -226
  624. package/dist/skills-OXFEAWMT.js +0 -510
  625. package/skills/README.md +0 -418
  626. package/skills/meta/find-skills/SKILL.md +0 -78
  627. package/skills/meta/find-skills/evals.md +0 -47
  628. package/src/domains/extensions/resource-path.ts +0 -27
  629. package/src/domains/lifecycle/migrations/2026-09-01-extension-install-digests.ts +0 -27
  630. package/src/interactive/overlays/agents.ts +0 -70
  631. package/src/interactive/overlays/library-install-confirm.ts +0 -152
  632. package/src/interactive/overlays/prompts.ts +0 -89
  633. package/src/interactive/overlays/skills-hub.ts +0 -615
  634. /package/{skills → library/skills}/coding/ast-grep/references/rule_reference.md +0 -0
  635. /package/{skills → library/skills}/coding/prototype/references/LOGIC.md +0 -0
  636. /package/{skills → library/skills}/coding/prototype/references/UI.md +0 -0
  637. /package/{skills → library/skills}/coding/tdd/references/mocking.md +0 -0
  638. /package/{skills → library/skills}/coding/tdd/references/tests.md +0 -0
  639. /package/{skills → library/skills}/context/context-handoff/scripts/new-handoff.sh +0 -0
  640. /package/{skills → library/skills}/git/branch-closeout/evals.md +0 -0
  641. /package/{skills → library/skills}/git/branch-closeout/references/closeout-checklist.md +0 -0
  642. /package/{skills → library/skills}/git/file-ticket/assets/issue-template.md +0 -0
  643. /package/{skills → library/skills}/git/file-ticket/evals.md +0 -0
  644. /package/{skills → library/skills}/git/file-ticket/references/issue-discovery.md +0 -0
  645. /package/{skills → library/skills}/git/fix-issue/evals.md +0 -0
  646. /package/{skills → library/skills}/git/fix-issue/references/diagnosis-and-rca.md +0 -0
  647. /package/{skills → library/skills}/git/resolve-merge-conflicts/references/conflict-matrix.md +0 -0
  648. /package/{skills → library/skills}/git/ship/assets/pr-template.md +0 -0
  649. /package/{skills → library/skills}/git/ship/evals.md +0 -0
  650. /package/{skills → library/skills}/git/ship/references/remote-and-branch-policy.md +0 -0
  651. /package/{skills → library/skills}/git/worktree-create/evals.md +0 -0
  652. /package/{skills → library/skills}/git/worktree-create/references/worktree-setup.md +0 -0
  653. /package/{skills → library/skills}/git/worktree-merge/evals.md +0 -0
  654. /package/{skills → library/skills}/git/worktree-merge/references/merge-strategies.md +0 -0
  655. /package/{skills → library/skills}/meta/clio-coder-test/references/harness.md +0 -0
  656. /package/{skills → library/skills}/meta/clio-coder-test/references/test-map.md +0 -0
  657. /package/{skills → library/skills}/planning/archify/evals.md +0 -0
@@ -0,0 +1,23 @@
1
+ {
2
+ "$schema": "https://agent-plugins.org/schemas/1.0.0/plugin.schema.json",
3
+ "name": "backlog",
4
+ "version": "0.4.1",
5
+ "description": "Turns a finished PRD or architecture doc into a ticket backlog of small stories with verifiable acceptance criteria, confirmed, then created as GitHub issues or in another configured tracker. Not for local sprint slicing into a SPRINT.md; use cut-it.",
6
+ "license": "Apache-2.0",
7
+ "extensions": {
8
+ "ai.iowarp.clio": {
9
+ "manifestVersion": 1,
10
+ "kind": "skill",
11
+ "resources": {
12
+ "skills": "."
13
+ },
14
+ "components": [
15
+ {
16
+ "kind": "skill",
17
+ "id": "backlog",
18
+ "path": "SKILL.md"
19
+ }
20
+ ]
21
+ }
22
+ }
23
+ }
@@ -22,7 +22,7 @@ allowed-tools:
22
22
  - ask_user
23
23
  clio-coder:
24
24
  registry-id: iowarp/clio-coder
25
- source-url: https://github.com/iowarp/clio-coder/tree/main/skills/planning/prd
25
+ source-url: https://github.com/iowarp/clio-coder/tree/main/library/skills/planning/prd
26
26
  audit: pass
27
27
  provenance: adapted
28
28
  origin: buildermethods/bm-prd-creator
@@ -45,7 +45,7 @@ Expected:
45
45
 
46
46
  ## Smoke record (2026-08-13)
47
47
 
48
- One representative scenario via `clio-coder skills eval` against Nemo-3.5-Lightning
48
+ One representative scenario via `clio-coder eval skill` against Nemo-3.5-Lightning
49
49
  (30B local, llamacpp on mini), full-auto sandbox. WEAK PASS. Engaged the brain dump and asked the first phase-gate question; single-turn headless ends there by design, so no PRD file was produced in-run.
50
50
 
51
51
  ## Battletest record (2026-09-03)
@@ -0,0 +1,23 @@
1
+ {
2
+ "$schema": "https://agent-plugins.org/schemas/1.0.0/plugin.schema.json",
3
+ "name": "prd",
4
+ "version": "0.4.1",
5
+ "description": "Turns an idea into a product requirements document through a phase-gated interview, ending in PRD.md plus per-milestone prompt files ready to drive a coding agent. Not for the problem-first product thesis; use product-intent.",
6
+ "license": "Apache-2.0",
7
+ "extensions": {
8
+ "ai.iowarp.clio": {
9
+ "manifestVersion": 1,
10
+ "kind": "skill",
11
+ "resources": {
12
+ "skills": "."
13
+ },
14
+ "components": [
15
+ {
16
+ "kind": "skill",
17
+ "id": "prd",
18
+ "path": "SKILL.md"
19
+ }
20
+ ]
21
+ }
22
+ }
23
+ }
@@ -20,7 +20,7 @@ allowed-tools:
20
20
  - ask_user
21
21
  clio-coder:
22
22
  registry-id: iowarp/clio-coder
23
- source-url: https://github.com/iowarp/clio-coder/tree/main/skills/planning/product-intent
23
+ source-url: https://github.com/iowarp/clio-coder/tree/main/library/skills/planning/product-intent
24
24
  audit: pass
25
25
  provenance: adapted
26
26
  origin: https://github.com/coleam00/skills/tree/main/.claude/skills/product-intent
@@ -32,7 +32,7 @@ Expected:
32
32
 
33
33
  ## Smoke record (2026-08-13)
34
34
 
35
- One representative scenario via `clio-coder skills eval` against Nemo-3.5-Lightning
35
+ One representative scenario via `clio-coder eval skill` against Nemo-3.5-Lightning
36
36
  (30B local, llamacpp on mini), full-auto sandbox. PASS. Interview degraded gracefully headless; PRD written to docs/, judge 5/5.
37
37
 
38
38
  ## Battletest record (2026-09-03)
@@ -0,0 +1,23 @@
1
+ {
2
+ "$schema": "https://agent-plugins.org/schemas/1.0.0/plugin.schema.json",
3
+ "name": "product-intent",
4
+ "version": "0.4.1",
5
+ "description": "Writes a problem-first product document for a greenfield effort: interviews for the problem, evidence, and a falsifiable hypothesis, with zero engineering decisions. Not for engineering decisions; use architecture. Not for turning a locked idea into milestone build prompts; use prd.",
6
+ "license": "Apache-2.0",
7
+ "extensions": {
8
+ "ai.iowarp.clio": {
9
+ "manifestVersion": 1,
10
+ "kind": "skill",
11
+ "resources": {
12
+ "skills": "."
13
+ },
14
+ "components": [
15
+ {
16
+ "kind": "skill",
17
+ "id": "product-intent",
18
+ "path": "SKILL.md"
19
+ }
20
+ ]
21
+ }
22
+ }
23
+ }
@@ -24,7 +24,7 @@ requires:
24
24
  - skill:tdd
25
25
  clio-coder:
26
26
  registry-id: iowarp/clio-coder
27
- source-url: https://github.com/iowarp/clio-coder/tree/main/skills/planning/tech-spec
27
+ source-url: https://github.com/iowarp/clio-coder/tree/main/library/skills/planning/tech-spec
28
28
  audit: pass
29
29
  provenance: adapted
30
30
  origin: https://github.com/dmmulroy/skills/tree/main/tech-spec
@@ -43,7 +43,7 @@ Expected:
43
43
 
44
44
  ## Smoke record (2026-08-13)
45
45
 
46
- One representative scenario via `clio-coder skills eval` against Nemo-3.5-Lightning
46
+ One representative scenario via `clio-coder eval skill` against Nemo-3.5-Lightning
47
47
  (30B local, llamacpp on mini), full-auto sandbox. PASS. Spec written and its claims exercised with node -e; judge 4/4.
48
48
 
49
49
  ## Battletest record (2026-09-03)
@@ -0,0 +1,23 @@
1
+ {
2
+ "$schema": "https://agent-plugins.org/schemas/1.0.0/plugin.schema.json",
3
+ "name": "tech-spec",
4
+ "version": "0.3.1",
5
+ "description": "Writes a typed call-stack architecture handoff: code-shaped contracts plus execution flows, implementation-ready for another engineer. User-invoked only. Not for weighing approaches or deciding the design; use architecture first.",
6
+ "license": "Apache-2.0",
7
+ "extensions": {
8
+ "ai.iowarp.clio": {
9
+ "manifestVersion": 1,
10
+ "kind": "skill",
11
+ "resources": {
12
+ "skills": "."
13
+ },
14
+ "components": [
15
+ {
16
+ "kind": "skill",
17
+ "id": "tech-spec",
18
+ "path": "SKILL.md"
19
+ }
20
+ ]
21
+ }
22
+ }
23
+ }
@@ -73,21 +73,21 @@ skills:
73
73
  sha256: d9382790ab30c9a13e5ca451f6f6b6b81eb8bcc6d458ad4931cc0495d39ea78d
74
74
  - name: find-skills
75
75
  path: meta/find-skills
76
- version: 0.2.0
77
- sha256: a2f8469b3a15059f8547e7566dcd27894c6e2a2126b3ed83acb470df051cd11d
76
+ version: 0.2.1
77
+ sha256: 48d35f7212d870d94354b8e792e363391ceb6692277012276f3a40c9a35411d9
78
78
  - name: herdr
79
79
  path: meta/herdr
80
80
  version: 0.2.0
81
81
  sha256: eeda051fe8736344b480fbd0d482a0e0ab82d4fc44e7ced5ff7058378beae3b6
82
82
  - name: skill-craft
83
83
  path: meta/skill-craft
84
- version: 0.3.0
85
- sha256: ba81e09412f26647a9384b07359201efb08949865c50934778a4ab3173d43096
84
+ version: 0.3.1
85
+ sha256: a8bc00508eca69e4988a4555ecdc9d3b29b2b00084374a2e9deca00fc80c8ffb
86
86
  # ── planning ──
87
87
  - name: archify
88
88
  path: planning/archify
89
89
  version: 0.1.0
90
- sha256: d9e891eb5f3c27678de14165a0eb35d1eb2289be480e55009f9a57bcfe55be2d
90
+ sha256: a43f96828207ec63ff11bfbb0602f853c0de58c68f3c669d3c5ac687917cfd74
91
91
  - name: architecture
92
92
  path: planning/architecture
93
93
  version: 0.4.1
@@ -140,5 +140,5 @@ skills:
140
140
  sha256: 3844770b507f9b2904aaa5c944c2b26f9ecf114383758dfff3bd7f39b2c717a6
141
141
  - name: workflow-distiller
142
142
  path: workflow/workflow-distiller
143
- version: 0.4.1
144
- sha256: 067b097299b0b630729a4a6ddde629dec5c798d5b4634f90f7feab380b8575e1
143
+ version: 0.4.2
144
+ sha256: 427009a3cf3e772520419761eca62b1e1ee41ad1bff9f1ed6e6c40871c9548d6
@@ -9,5 +9,5 @@ skills:
9
9
  - name: archify
10
10
  category: planning
11
11
  sourceUrl: https://github.com/tt-a1i/archify/tree/v2.16.0/archify
12
- overlay: skills/planning/archify
12
+ overlay: library/skills/planning/archify
13
13
  exclude: [test, package-lock.json]
@@ -18,7 +18,7 @@ allowed-tools:
18
18
  - ls
19
19
  clio-coder:
20
20
  registry-id: iowarp/clio-coder
21
- source-url: https://github.com/iowarp/clio-coder/tree/main/skills/research/arxiv-literature
21
+ source-url: https://github.com/iowarp/clio-coder/tree/main/library/skills/research/arxiv-literature
22
22
  audit: pass
23
23
  provenance: designed
24
24
  eval-status: smoke-checked
@@ -54,7 +54,7 @@ Expected:
54
54
 
55
55
  ## Smoke record (2026-08-13)
56
56
 
57
- One representative scenario via `clio-coder skills eval` against Nemo-3.5-Lightning
57
+ One representative scenario via `clio-coder eval skill` against Nemo-3.5-Lightning
58
58
  (30B local, llamacpp on mini), full-auto sandbox. PASS (driver FAIL overturned on transcript review): skill loaded, skill_surface blocked two curl attempts, retrieval ran through web_fetch on the Atom API per the designed dispatch-unavailable fallback. Judge misread the OR in bullet 1. Query thrash (8 fetches) led to the two-fetch cap now in the body.
59
59
 
60
60
  ## Battletest record (2026-09-03)
@@ -0,0 +1,23 @@
1
+ {
2
+ "$schema": "https://agent-plugins.org/schemas/1.0.0/plugin.schema.json",
3
+ "name": "arxiv-literature",
4
+ "version": "0.5.1",
5
+ "description": "Searches arXiv, summarizes or compares papers, and builds a compact literature survey as citation-ready, source-linked paper cards. Prefer the Researcher shadow agent for noisy multi-paper retrieval.",
6
+ "license": "Apache-2.0",
7
+ "extensions": {
8
+ "ai.iowarp.clio": {
9
+ "manifestVersion": 1,
10
+ "kind": "skill",
11
+ "resources": {
12
+ "skills": "."
13
+ },
14
+ "components": [
15
+ {
16
+ "kind": "skill",
17
+ "id": "arxiv-literature",
18
+ "path": "SKILL.md"
19
+ }
20
+ ]
21
+ }
22
+ }
23
+ }
@@ -22,7 +22,7 @@ allowed-tools:
22
22
  - bash
23
23
  clio-coder:
24
24
  registry-id: iowarp/clio-coder
25
- source-url: https://github.com/iowarp/clio-coder/tree/main/skills/research/experiment-protocol
25
+ source-url: https://github.com/iowarp/clio-coder/tree/main/library/skills/research/experiment-protocol
26
26
  audit: pass
27
27
  provenance: designed
28
28
  eval-status: smoke-checked
@@ -87,7 +87,7 @@ Prompt: "Make this kernel faster."
87
87
 
88
88
  ## Smoke record (2026-08-13)
89
89
 
90
- One representative scenario via `clio-coder skills eval` against Nemo-3.5-Lightning
90
+ One representative scenario via `clio-coder eval skill` against Nemo-3.5-Lightning
91
91
  (30B local, llamacpp on mini), full-auto sandbox. PASS. Pre-registration written before touching the seeded kernel; judge 5/5.
92
92
 
93
93
  ## Battletest record (2026-09-03)
@@ -0,0 +1,23 @@
1
+ {
2
+ "$schema": "https://agent-plugins.org/schemas/1.0.0/plugin.schema.json",
3
+ "name": "experiment-protocol",
4
+ "version": "0.3.1",
5
+ "description": "Pre-registers a performance study, numerical comparison, parameter sweep, or benchmark: thresholds, tolerances, environment pins, and verdict conditions locked into the validation contract before any measurement. Not for diagnosing a stalled bug; use scientific-debugging.",
6
+ "license": "Apache-2.0",
7
+ "extensions": {
8
+ "ai.iowarp.clio": {
9
+ "manifestVersion": 1,
10
+ "kind": "skill",
11
+ "resources": {
12
+ "skills": "."
13
+ },
14
+ "components": [
15
+ {
16
+ "kind": "skill",
17
+ "id": "experiment-protocol",
18
+ "path": "SKILL.md"
19
+ }
20
+ ]
21
+ }
22
+ }
23
+ }
@@ -21,7 +21,7 @@ allowed-tools:
21
21
  - bash
22
22
  clio-coder:
23
23
  registry-id: iowarp/clio-coder
24
- source-url: https://github.com/iowarp/clio-coder/tree/main/skills/research/scientific-debugging
24
+ source-url: https://github.com/iowarp/clio-coder/tree/main/library/skills/research/scientific-debugging
25
25
  audit: pass
26
26
  provenance: designed
27
27
  eval-status: smoke-checked
@@ -134,7 +134,7 @@ accumulation loop; regression check fails by 1.474e-4).
134
134
 
135
135
  ## Smoke record (2026-08-13)
136
136
 
137
- One representative scenario via `clio-coder skills eval` against Nemo-3.5-Lightning
137
+ One representative scenario via `clio-coder eval skill` against Nemo-3.5-Lightning
138
138
  (30B local, llamacpp on mini), full-auto sandbox. PASS. Judge 6/6 on the seeded numerical fixture; cleanest research run.
139
139
 
140
140
  ## Battletest record (2026-09-03)
@@ -0,0 +1,23 @@
1
+ {
2
+ "$schema": "https://agent-plugins.org/schemas/1.0.0/plugin.schema.json",
3
+ "name": "scientific-debugging",
4
+ "version": "0.3.1",
5
+ "description": "Diagnoses stalled or cross-system failures and wrong, NaN, nondeterministic, or unexpectedly slow scientific results through falsifiable hypotheses across distinct fault classes, with evidence-cited verdicts before any fix. Not for designing benchmarks or pre-registered experiments; use experiment-protocol.",
6
+ "license": "Apache-2.0",
7
+ "extensions": {
8
+ "ai.iowarp.clio": {
9
+ "manifestVersion": 1,
10
+ "kind": "skill",
11
+ "resources": {
12
+ "skills": "."
13
+ },
14
+ "components": [
15
+ {
16
+ "kind": "skill",
17
+ "id": "scientific-debugging",
18
+ "path": "SKILL.md"
19
+ }
20
+ ]
21
+ }
22
+ }
23
+ }
@@ -22,7 +22,7 @@ allowed-tools:
22
22
  - bash
23
23
  clio-coder:
24
24
  registry-id: iowarp/clio-coder
25
- source-url: https://github.com/iowarp/clio-coder/tree/main/skills/research/scientific-modernization
25
+ source-url: https://github.com/iowarp/clio-coder/tree/main/library/skills/research/scientific-modernization
26
26
  audit: pass
27
27
  provenance: designed
28
28
  eval-status: scenarios-recorded
@@ -80,7 +80,7 @@ Expected:
80
80
 
81
81
  ## Smoke record (2026-08-13)
82
82
 
83
- One representative scenario via `clio-coder skills eval` against Nemo-3.5-Lightning
83
+ One representative scenario via `clio-coder eval skill` against Nemo-3.5-Lightning
84
84
  (30B local, llamacpp on mini), full-auto sandbox. NOT COMPLETED: loop guard at 75 tool calls. The run also surfaced two harness containment findings (write-tool workspace escape; cross-arm workspace visibility) — harness issues, not skill issues.
85
85
 
86
86
  ## Battletest record (2026-09-03)
@@ -0,0 +1,23 @@
1
+ {
2
+ "$schema": "https://agent-plugins.org/schemas/1.0.0/plugin.schema.json",
3
+ "name": "scientific-modernization",
4
+ "version": "0.4.1",
5
+ "description": "Modernizes, ports, rewrites, packages, or replaces established scientific software in independently validated stages against an external scientific oracle, settling compatibility and upstream stewardship before calling it complete. Not for an isolated benchmark; use experiment-protocol. Not for diagnosing wrong results; use scientific-debugging.",
6
+ "license": "Apache-2.0",
7
+ "extensions": {
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