@iloom/cli 0.3.0 → 0.3.2

package/dist/{chunk-IP7SMKIF.js → chunk-UJL4HI2R.js}

@@ -4,6 +4,7 @@ import {
 } from "./chunk-GEHQXLEI.js";
 
 // src/utils/env.ts
+import path from "path";
 import dotenvFlow from "dotenv-flow";
 function parseEnvFile(content) {
   const envMap = /* @__PURE__ */ new Map();
@@ -116,68 +117,62 @@ function loadEnvIntoProcess(options) {
   }
   return returnValue;
 }
-
-// src/utils/IdentifierParser.ts
-var IdentifierParser = class {
-  constructor(gitWorktreeManager) {
-    this.gitWorktreeManager = gitWorktreeManager;
-  }
-  /**
-   * Parse identifier using pattern-based detection on existing worktrees.
-   * Does NOT make GitHub API calls - only checks local worktree patterns.
-   *
-   * @param identifier - The identifier to parse (e.g., "42", "#66", "ENG-123", "my-branch")
-   * @returns ParsedInput with type, number/branchName, and originalInput
-   * @throws Error if no matching worktree is found
-   */
-  async parseForPatternDetection(identifier) {
-    const cleanId = identifier.replace(/^#/, "").trim();
-    const originalInput = identifier;
-    const numericMatch = cleanId.match(/^(\d+)$/);
-    if (numericMatch == null ? void 0 : numericMatch[1]) {
-      const number = parseInt(numericMatch[1], 10);
-      const prWorktree = await this.gitWorktreeManager.findWorktreeForPR(number, "");
-      if (prWorktree) {
-        return {
-          type: "pr",
-          number,
-          originalInput
-        };
-      }
-      const issueWorktree = await this.gitWorktreeManager.findWorktreeForIssue(number);
-      if (issueWorktree) {
-        return {
-          type: "issue",
-          number,
-          originalInput
-        };
-      }
-      throw new Error(`No worktree found for identifier: ${identifier}`);
+var DOTENV_FLOW_NODE_ENV = process.env.DOTENV_FLOW_NODE_ENV ?? "development";
+function getDotenvFlowFiles() {
+  return [
+    ".env",
+    ".env.local",
+    `.env.${DOTENV_FLOW_NODE_ENV}`,
+    `.env.${DOTENV_FLOW_NODE_ENV}.local`
+  ];
+}
+function getLocalEquivalent(filename) {
+  if (filename.endsWith(".local")) {
+    return filename;
+  }
+  return `${filename}.local`;
+}
+async function findEnvFileForDatabaseUrl(workspacePath, variableName, isFileTracked, fileExists, getEnvVariable) {
+  const file = await findEnvFileContainingVariable(workspacePath, variableName, fileExists, getEnvVariable);
+  if (file === null) {
+    return ".env.local";
+  }
+  const isTracked = await isFileTracked(file, workspacePath);
+  if (isTracked) {
+    return getLocalEquivalent(file);
+  }
+  return file;
+}
+async function buildEnvSourceCommands(workspacePath, fileExists) {
+  const files = getDotenvFlowFiles();
+  const commands = [];
+  for (const file of files) {
+    const fullPath = path.join(workspacePath, file);
+    const exists = await fileExists(fullPath);
+    if (exists) {
+      commands.push(`source ${file}`);
     }
-    const alphanumericMatch = cleanId.match(/^([A-Za-z]+-\d+)$/);
-    if (alphanumericMatch == null ? void 0 : alphanumericMatch[1]) {
-      const alphanumericId = alphanumericMatch[1];
-      const issueWorktree = await this.gitWorktreeManager.findWorktreeForIssue(alphanumericId);
-      if (issueWorktree) {
-        return {
-          type: "issue",
-          number: alphanumericId,
-          originalInput
-        };
-      }
-      throw new Error(`No worktree found for identifier: ${identifier}`);
+  }
+  return commands;
+}
+async function findEnvFileContainingVariable(workspacePath, variableName, fileExists, getEnvVariable) {
+  const files = getDotenvFlowFiles().reverse();
+  for (const file of files) {
+    const fullPath = path.join(workspacePath, file);
+    if (!await fileExists(fullPath)) {
+      continue;
     }
-    const branchWorktree = await this.gitWorktreeManager.findWorktreeForBranch(cleanId);
-    if (branchWorktree) {
-      return {
-        type: "branch",
-        branchName: cleanId,
-        originalInput
-      };
+    const value = await getEnvVariable(fullPath, variableName);
+    if (value !== null) {
+      return file;
     }
-    throw new Error(`No worktree found for identifier: ${identifier}`);
   }
-};
+  return null;
+}
+async function hasVariableInAnyEnvFile(workspacePath, variableName, fileExists, getEnvVariable) {
+  const file = await findEnvFileContainingVariable(workspacePath, variableName, fileExists, getEnvVariable);
+  return file !== null;
+}
 
 export {
   parseEnvFile,
@@ -185,6 +180,10 @@ export {
   validateEnvVariable,
   extractPort,
   loadEnvIntoProcess,
-  IdentifierParser
+  getDotenvFlowFiles,
+  findEnvFileForDatabaseUrl,
+  buildEnvSourceCommands,
+  findEnvFileContainingVariable,
+  hasVariableInAnyEnvFile
 };
-//# sourceMappingURL=chunk-IP7SMKIF.js.map
+//# sourceMappingURL=chunk-UJL4HI2R.js.map

package/dist/chunk-UJL4HI2R.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/utils/env.ts"],"sourcesContent":["import path from 'path'\nimport dotenvFlow, { type DotenvFlowConfigOptions } from 'dotenv-flow'\nimport { logger } from './logger.js'\n\n/**\n * Parse .env file content into key-value map\n * Handles comments, empty lines, quoted/unquoted values, multiline values\n */\nexport function parseEnvFile(content: string): Map<string, string> {\n  const envMap = new Map<string, string>()\n  const lines = content.split('\\n')\n\n  for (const line of lines) {\n    const trimmedLine = line.trim()\n\n    // Skip empty lines and comments\n    if (!trimmedLine || trimmedLine.startsWith('#')) {\n      continue\n    }\n\n    // Remove 'export ' prefix if present\n    const cleanLine = trimmedLine.startsWith('export ')\n      ? trimmedLine.substring(7)\n      : trimmedLine\n\n    // Find the first equals sign\n    const equalsIndex = cleanLine.indexOf('=')\n    if (equalsIndex === -1) {\n      continue\n    }\n\n    const key = cleanLine.substring(0, equalsIndex).trim()\n    let value = cleanLine.substring(equalsIndex + 1)\n\n    // Handle quoted values\n    if (\n      (value.startsWith('\"') && value.endsWith('\"')) ||\n      (value.startsWith(\"'\") && value.endsWith(\"'\"))\n    ) {\n      value = value.substring(1, value.length - 1)\n      // Unescape quotes\n      value = value.replace(/\\\\\"/g, '\"').replace(/\\\\'/g, \"'\")\n      // Unescape newlines\n      value = value.replace(/\\\\n/g, '\\n')\n    }\n\n    if (key) {\n      envMap.set(key, value)\n    }\n  }\n\n  return envMap\n}\n\n/**\n * Format environment variable as line for .env file\n * Always quotes values and escapes internal quotes\n */\nexport function formatEnvLine(key: string, value: string): string {\n  // Escape quotes and newlines in the value\n  const escapedValue = value\n    .replace(/\"/g, '\\\\\"')\n    .replace(/\\n/g, '\\\\n')\n    .replace(/\\r/g, '\\\\r')\n\n  return `${key}=\"${escapedValue}\"`\n}\n\n/**\n * Validate environment variable name and value\n */\nexport function validateEnvVariable(\n  key: string,\n  _value?: string\n): { valid: boolean; error?: string } {\n  if (!key || key.length === 0) {\n    return {\n      valid: false,\n      error: 'Environment variable key cannot be empty',\n    }\n  }\n\n  if (!isValidEnvKey(key)) {\n    return {\n      valid: false,\n      error: `Invalid environment variable name: ${key}. Must start with a letter or underscore and contain only letters, numbers, and underscores.`,\n    }\n  }\n\n  // Values can be any string, including empty\n  return { valid: true }\n}\n\n/**\n * Normalize line endings for cross-platform compatibility\n */\nexport function normalizeLineEndings(content: string): string {\n  return content.replace(/\\r\\n/g, '\\n').replace(/\\r/g, '\\n')\n}\n\n/**\n * Extract port from .env file if present\n */\nexport function extractPort(envContent: Map<string, string>): number | null {\n  const portValue = envContent.get('PORT')\n  if (!portValue) {\n    return null\n  }\n\n  const port = parseInt(portValue, 10)\n  if (isNaN(port)) {\n    return null\n  }\n\n  return port\n}\n\n/**\n * Check if environment variable key is valid\n */\nexport function isValidEnvKey(key: string): boolean {\n  if (!key || key.length === 0) {\n    return false\n  }\n\n  // Must start with letter or underscore, followed by letters, numbers, or underscores\n  const validKeyRegex = /^[A-Za-z_][A-Za-z0-9_]*$/\n  return validKeyRegex.test(key)\n}\n\n/**\n * Load environment variables using dotenv-flow\n * Supports environment-specific files (.env.development, .env.production, etc.)\n * and local overrides (.env.local, .env.development.local)\n */\nexport function loadEnvIntoProcess(options?: {\n  path?: string\n  nodeEnv?: string\n  defaultNodeEnv?: string\n}): { parsed?: Record<string, string>; error?: Error } {\n  logger.debug('Loading environment variables with dotenv-flow', {\n    options: {\n      path: options?.path ?? 'current working directory',\n      nodeEnv: options?.nodeEnv ?? 'not specified',\n      defaultNodeEnv: options?.defaultNodeEnv ?? 'development (default)'\n    }\n  })\n\n  const configOptions: Partial<DotenvFlowConfigOptions> = {\n    silent: true, // Don't throw errors if .env files are missing\n  }\n\n  // Only add defined values to avoid TypeScript strict type issues\n  if (options?.path !== undefined) {\n    configOptions.path = options.path\n    logger.debug(`Using custom path: ${options.path}`)\n  }\n  if (options?.nodeEnv !== undefined) {\n    configOptions.node_env = options.nodeEnv\n    logger.debug(`Using NODE_ENV: ${options.nodeEnv}`)\n  }\n  if (options?.defaultNodeEnv !== undefined) {\n    configOptions.default_node_env = options.defaultNodeEnv\n    logger.debug(`Using default NODE_ENV: ${options.defaultNodeEnv}`)\n  } else {\n    configOptions.default_node_env = 'development'\n    logger.debug('Using default NODE_ENV: development')\n  }\n\n  logger.debug('dotenv-flow config options:', configOptions)\n\n  const result = dotenvFlow.config(configOptions)\n\n  const returnValue: { parsed?: Record<string, string>; error?: Error } = {}\n\n  if (result.parsed) {\n    returnValue.parsed = result.parsed as Record<string, string>\n    const variableCount = Object.keys(result.parsed).length\n    logger.debug(`Successfully loaded ${variableCount} environment variables`)\n  } else {\n    logger.debug('No environment variables were parsed')\n  }\n\n  if (result.error) {\n    returnValue.error = result.error\n    logger.debug('dotenv-flow returned an error', {\n      error: result.error.message,\n      name: result.error.name\n    })\n  } else {\n    logger.debug('dotenv-flow completed without errors')\n  }\n\n  return returnValue\n}\n\n/**\n * Load environment variables for a specific workspace\n * Automatically determines environment based on NODE_ENV or defaults to development\n */\nexport function loadWorkspaceEnv(workspacePath: string): {\n  parsed?: Record<string, string>\n  error?: Error\n} {\n  const nodeEnv = process.env.NODE_ENV ?? 'development'\n\n  logger.debug('Loading workspace environment variables', {\n    workspacePath,\n    detectedNodeEnv: nodeEnv,\n    processNodeEnv: process.env.NODE_ENV ?? 'not set'\n  })\n\n  return loadEnvIntoProcess({\n    path: workspacePath,\n    nodeEnv: nodeEnv,\n    defaultNodeEnv: 'development'\n  })\n}\n\n// CONSTANT: Always use 'development' per critical constraint, unless overridden\nconst DOTENV_FLOW_NODE_ENV = process.env.DOTENV_FLOW_NODE_ENV ?? 'development'\n\n/**\n * Get dotenv-flow files in precedence order (lowest to highest)\n * Always uses 'development' as NODE_ENV per constraint\n */\nexport function getDotenvFlowFiles(): string[] {\n  return [\n    '.env',\n    '.env.local',\n    `.env.${DOTENV_FLOW_NODE_ENV}`,\n    `.env.${DOTENV_FLOW_NODE_ENV}.local`\n  ]\n}\n\n/**\n * Map a file to its \"local\" equivalent for git-safe writes\n * .env -> .env.local\n * .env.{NODE_ENV} -> .env.{NODE_ENV}.local\n * Already local files return unchanged\n */\nexport function getLocalEquivalent(filename: string): string {\n  // Already a .local file\n  if (filename.endsWith('.local')) {\n    return filename\n  }\n  return `${filename}.local`\n}\n\n/**\n * Find the appropriate env file to write a database URL variable to\n * Considers dotenv-flow precedence and git tracking status\n * Returns path relative to workspacePath\n *\n * Algorithm:\n * 1. Search files in reverse precedence order (highest first)\n * 2. Find first file containing the variable\n * 3. If tracked by git, return its .local equivalent\n * 4. If not tracked, return the file itself\n * 5. If not found anywhere, return '.env.local' (safe default)\n */\nexport async function findEnvFileForDatabaseUrl(\n  workspacePath: string,\n  variableName: string,\n  isFileTracked: (filePath: string, cwd: string) => Promise<boolean>,\n  fileExists: (filePath: string) => Promise<boolean>,\n  getEnvVariable: (filePath: string, varName: string) => Promise<string | null>\n): Promise<string> {\n  // Find the highest-precedence file containing the variable\n  const file = await findEnvFileContainingVariable(workspacePath, variableName, fileExists, getEnvVariable)\n\n  if (file === null) {\n    // Variable not found anywhere - use safe default\n    return '.env.local'\n  }\n\n  // Found the variable - check git tracking\n  const isTracked = await isFileTracked(file, workspacePath)\n  if (isTracked) {\n    // Return .local equivalent for git safety\n    return getLocalEquivalent(file)\n  }\n\n  return file\n}\n\n/**\n * Build shell source commands for all existing dotenv-flow files\n * Returns commands in precedence order (later overrides earlier)\n */\nexport async function buildEnvSourceCommands(\n  workspacePath: string,\n  fileExists: (filePath: string) => Promise<boolean>\n): Promise<string[]> {\n  const files = getDotenvFlowFiles()\n  const commands: string[] = []\n\n  for (const file of files) {\n    const fullPath = path.join(workspacePath, file)\n    const exists = await fileExists(fullPath)\n    if (exists) {\n      commands.push(`source ${file}`)\n    }\n  }\n\n  return commands\n}\n\n/**\n * Find the highest-precedence env file containing a variable\n * Searches all dotenv-flow files in reverse precedence order (highest first)\n * Returns the relative filename if found, null otherwise\n */\nexport async function findEnvFileContainingVariable(\n  workspacePath: string,\n  variableName: string,\n  fileExists: (filePath: string) => Promise<boolean>,\n  getEnvVariable: (filePath: string, varName: string) => Promise<string | null>\n): Promise<string | null> {\n  const files = getDotenvFlowFiles().reverse() // highest precedence first\n\n  for (const file of files) {\n    const fullPath = path.join(workspacePath, file)\n\n    // Skip if file doesn't exist\n    if (!(await fileExists(fullPath))) {\n      continue\n    }\n\n    // Check if file contains the variable\n    const value = await getEnvVariable(fullPath, variableName)\n    if (value !== null) {\n      return file\n    }\n  }\n\n  return null\n}\n\n/**\n * Check if a variable exists in any dotenv-flow file\n * Searches all dotenv-flow files (.env, .env.local, .env.{NODE_ENV}, .env.{NODE_ENV}.local)\n * Returns true if variable is found in any file, false otherwise\n */\nexport async function hasVariableInAnyEnvFile(\n  workspacePath: string,\n  variableName: string,\n  fileExists: (filePath: string) => Promise<boolean>,\n  getEnvVariable: (filePath: string, varName: string) => Promise<string | null>\n): Promise<boolean> {\n  const file = await 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package/dist/{chunk-XXV3UFZL.js → chunk-ZLIHIUDQ.js}

@@ -1,4 +1,7 @@
 #!/usr/bin/env node
+import {
+  openTerminalWindow
+} from "./chunk-RW54ZMBM.js";
 import {
   logger
 } from "./chunk-GEHQXLEI.js";
@@ -161,7 +164,6 @@ async function launchClaudeInNewTerminalWindow(_prompt, options) {
   if (!workspacePath) {
     throw new Error("workspacePath is required for terminal window launch");
   }
-  const { openTerminalWindow } = await import("./terminal-BIRBZ4AZ.js");
   const executable = executablePath ?? "iloom";
   let launchCommand = `${executable} spin`;
   if (oneShot !== "default") {
@@ -223,20 +225,20 @@ Generate a git branch name for the following issue:
       model,
       headless: true
     });
-    const branchName = result.trim();
+    const branchName = result.trim().toLowerCase();
     logger.debug("Claude returned branch name", { branchName, issueNumber });
     if (!branchName || !isValidBranchName(branchName, issueNumber)) {
       logger.warn("Invalid branch name from Claude, using fallback", { branchName });
-      return `feat/issue-${issueNumber}`;
+      return `feat/issue-${issueNumber}`.toLowerCase();
     }
     return branchName;
   } catch (error) {
     logger.warn("Failed to generate branch name with Claude", { error });
-    return `feat/issue-${issueNumber}`;
+    return `feat/issue-${issueNumber}`.toLowerCase();
   }
 }
 function isValidBranchName(name, issueNumber) {
-  const pattern = new RegExp(`^(feat|fix|docs|refactor|test|chore)/issue-${issueNumber}__[a-z0-9-]+$`);
+  const pattern = new RegExp(`^(feat|fix|docs|refactor|test|chore)/issue-${issueNumber}__[a-z0-9-]+$`, "i");
   return pattern.test(name) && name.length <= 50;
 }
 
@@ -247,4 +249,4 @@ export {
   launchClaudeInNewTerminalWindow,
   generateBranchName
 };
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package/dist/chunk-ZLIHIUDQ.js.map

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+{"version":3,"sources":["../src/utils/claude.ts"],"sourcesContent":["import { execa } from 'execa'\nimport { existsSync } from 'node:fs'\nimport { join } from 'node:path'\nimport { logger } from './logger.js'\nimport { openTerminalWindow } from './terminal.js'\n\nexport interface ClaudeCliOptions {\n\tmodel?: string\n\tpermissionMode?: 'plan' | 'acceptEdits' | 'bypassPermissions' | 'default'\n\taddDir?: string\n\theadless?: boolean\n\tbranchName?: string // Optional branch name for terminal coloring\n\tport?: number // Optional port for terminal window export\n\ttimeout?: number // Timeout in milliseconds\n\tappendSystemPrompt?: string // System instructions to append to system prompt\n\tmcpConfig?: Record<string, unknown>[] // Array of MCP server configurations\n\tallowedTools?: string[] // Tools to allow via --allowed-tools flag\n\tdisallowedTools?: string[] // Tools to disallow via --disallowed-tools flag\n\tagents?: Record<string, unknown> // Agent configurations for --agents flag\n\toneShot?: import('../types/index.js').OneShotMode // One-shot automation mode\n\tsetArguments?: string[] // Raw --set arguments to forward (e.g., ['workflows.issue.startIde=false'])\n\texecutablePath?: string // Executable path to use for spin command (e.g., 'il', 'il-125', or '/path/to/dist/cli.js')\n}\n\n/**\n * Detect if Claude CLI is available on the system\n */\nexport async function detectClaudeCli(): Promise<boolean> {\n\ttry {\n\t\t// Use 'command -v' for cross-platform compatibility (works on macOS/Linux)\n\t\tawait execa('command', ['-v', 'claude'], {\n\t\t\tshell: true,\n\t\t\ttimeout: 5000,\n\t\t})\n\t\treturn true\n\t} catch (error) {\n\t\t// Claude CLI not found\n\t\tlogger.debug('Claude CLI not available', { error })\n\t\treturn false\n\t}\n}\n\n/**\n * Get Claude CLI version\n */\nexport async function getClaudeVersion(): Promise<string | null> {\n\ttry {\n\t\tconst result = await execa('claude', ['--version'], {\n\t\t\ttimeout: 5000,\n\t\t})\n\t\treturn result.stdout.trim()\n\t} catch (error) {\n\t\tlogger.warn('Failed to get Claude version', { error })\n\t\treturn null\n\t}\n}\n\n/**\n * Parse JSON stream output and extract result from last JSON object with type:\"result\"\n */\nfunction parseJsonStreamOutput(output: string): string {\n\ttry {\n\t\t// Split by newlines and filter out empty lines\n\t\tconst lines = output.split('\\n').filter(line => line.trim())\n\n\t\t// Find the last valid JSON object with type:\"result\"\n\t\tlet lastResult = ''\n\t\tfor (const line of lines) {\n\t\t\ttry {\n\t\t\t\tconst jsonObj = JSON.parse(line)\n\t\t\t\tif (jsonObj && typeof jsonObj === 'object' && jsonObj.type === 'result' && 'result' in jsonObj) {\n\t\t\t\t\tlastResult = jsonObj.result\n\t\t\t\t}\n\t\t\t} catch {\n\t\t\t\t// Skip invalid JSON lines\n\t\t\t\tcontinue\n\t\t\t}\n\t\t}\n\n\t\treturn lastResult || output // Fallback to original output if no valid result found\n\t} catch {\n\t\t// If parsing fails completely, return original output\n\t\treturn output\n\t}\n}\n\n/**\n * Launch Claude CLI with specified options\n * In headless mode, returns stdout. In interactive mode, returns void.\n */\nexport async function launchClaude(\n\tprompt: string,\n\toptions: ClaudeCliOptions = {}\n): Promise<string | void> {\n\tconst { model, permissionMode, addDir, headless = false, appendSystemPrompt, mcpConfig, allowedTools, disallowedTools, agents } = options\n\n\t// Build command arguments\n\tconst args: string[] = []\n\n\tif (headless) {\n\t\targs.push('-p')\n\n\t\t// Add JSON streaming output for progress tracking\n\t\targs.push('--output-format', 'stream-json')\n\t\targs.push('--verbose')\n\t}\n\n\tif (model) {\n\t\targs.push('--model', model)\n\t}\n\n\tif (permissionMode && permissionMode !== 'default') {\n\t\targs.push('--permission-mode', permissionMode)\n\t}\n\n\tif (addDir) {\n\t\targs.push('--add-dir', addDir)\n\t}\n\n\targs.push('--add-dir', '/tmp') //TODO: Won't work on Windows\n\n\t// Add --append-system-prompt flag if provided\n\tif (appendSystemPrompt) {\n\t\targs.push('--append-system-prompt', appendSystemPrompt)\n\t}\n\n\t// Add --mcp-config flags for each MCP server configuration\n\tif (mcpConfig && mcpConfig.length > 0) {\n\t\tfor (const config of mcpConfig) {\n\t\t\targs.push('--mcp-config', JSON.stringify(config))\n\t\t}\n\t}\n\n\t// Add --allowed-tools flags if provided\n\tif (allowedTools && allowedTools.length > 0) {\n\t\targs.push('--allowed-tools', ...allowedTools)\n\t}\n\n\t// Add --disallowed-tools flags if provided\n\tif (disallowedTools && disallowedTools.length > 0) {\n\t\targs.push('--disallowed-tools', ...disallowedTools)\n\t}\n\n\t// Add --agents flag if provided\n\tif (agents) {\n\t\targs.push('--agents', JSON.stringify(agents))\n\t}\n\n\ttry {\n\t\tif (headless) {\n\t\t\t// Headless mode: capture and return output\n\t\t\tconst isDebugMode = logger.isDebugEnabled()\n\n\t\t\t// Set up execa options based on debug mode\n\t\t\tconst execaOptions = {\n\t\t\t\tinput: prompt,\n\t\t\t\ttimeout: 0, // Disable timeout for long responses\n\t\t\t\t...(addDir && { cwd: addDir }), // Run Claude in the worktree directory\n\t\t\t\tverbose: isDebugMode,\n\t\t\t\t...(isDebugMode && { stdio: ['pipe', 'pipe', 'pipe'] as const }), // Enable streaming in debug mode\n\t\t\t}\n\n\t\t\tconst subprocess = execa('claude', args, execaOptions)\n\n\t\t\t// Check if JSON streaming format is enabled (always true in headless mode)\n\t\t\tconst isJsonStreamFormat = args.includes('--output-format') && args.includes('stream-json')\n\n\t\t\t// Handle real-time streaming (enabled for progress tracking)\n\t\t\tlet outputBuffer = ''\n\t\t\tlet isStreaming = false\n\t\t\tlet isFirstProgress = true\n\t\t\tif (subprocess.stdout && typeof subprocess.stdout.on === 'function') {\n\t\t\t\tisStreaming = true\n\t\t\t\tsubprocess.stdout.on('data', (chunk: Buffer) => {\n\t\t\t\t\tconst text = chunk.toString()\n\t\t\t\t\toutputBuffer += text\n\n\t\t\t\t\tif (isDebugMode) {\n\t\t\t\t\t\tprocess.stdout.write(text) // Full JSON streaming in debug mode\n\t\t\t\t\t} else {\n\t\t\t\t\t\t// Progress dots in non-debug mode with robot emoji prefix\n\t\t\t\t\t\tif (isFirstProgress) {\n\t\t\t\t\t\t\tprocess.stdout.write('🤖 .')\n\t\t\t\t\t\t\tisFirstProgress = false\n\t\t\t\t\t\t} else {\n\t\t\t\t\t\t\tprocess.stdout.write('.')\n\t\t\t\t\t\t}\n\t\t\t\t\t}\n\t\t\t\t})\n\t\t\t}\n\n\t\t\tconst result = await subprocess\n\n\t\t\t// Return streamed output if we were streaming, otherwise use result.stdout\n\t\t\tif (isStreaming) {\n\t\t\t\tconst rawOutput = outputBuffer.trim()\n\n\t\t\t\t// Clean up progress dots with newline in non-debug mode\n\t\t\t\tif (!isDebugMode) {\n\t\t\t\t\tprocess.stdout.write('\\n')\n\t\t\t\t}\n\n\t\t\t\treturn isJsonStreamFormat ? parseJsonStreamOutput(rawOutput) : rawOutput\n\t\t\t} else {\n\t\t\t\t// Fallback for mocked tests or when streaming not available\n\t\t\t\tif (isDebugMode) {\n\t\t\t\t\t// In debug mode, write to stdout even if not streaming (old behavior for tests)\n\t\t\t\t\tprocess.stdout.write(result.stdout)\n\t\t\t\t\tif (result.stdout && !result.stdout.endsWith('\\n')) {\n\t\t\t\t\t\tprocess.stdout.write('\\n')\n\t\t\t\t\t}\n\t\t\t\t} else {\n\t\t\t\t\t// In non-debug mode, show a single progress dot even without streaming (for tests)\n\t\t\t\t\tprocess.stdout.write('🤖 .')\n\t\t\t\t\tprocess.stdout.write('\\n')\n\t\t\t\t}\n\t\t\t\tconst rawOutput = result.stdout.trim()\n\t\t\t\treturn isJsonStreamFormat ? parseJsonStreamOutput(rawOutput) : rawOutput\n\t\t\t}\n\t\t} else {\n\t\t\t// Simple interactive mode: run Claude in current terminal with stdio inherit\n\t\t\t// Used for conflict resolution, error fixing, etc.\n\t\t\t// This is the simple approach: claude -- \"prompt\"\n\n\t\t\t// Execute in current terminal (blocking, inherits stdio)\n\t\t\tawait execa('claude', [...args, '--', prompt], {\n\t\t\t\t...(addDir && { cwd: addDir }),\n\t\t\t\tstdio: 'inherit', // Let user interact directly in current terminal\n\t\t\t\ttimeout: 0, // Disable timeout\n\t\t\t\tverbose: logger.isDebugEnabled(),\n\t\t\t})\n\n\t\t\treturn\n\t\t}\n\t} catch (error) {\n\t\t// Check for specific Claude CLI errors\n\t\tconst execaError = error as {\n\t\t\tstderr?: string\n\t\t\tmessage?: string\n\t\t\texitCode?: number\n\t\t}\n\n\t\t// Re-throw with more context\n\t\tconst errorMessage = execaError.stderr ?? execaError.message ?? 'Unknown Claude CLI error'\n\t\tthrow new Error(`Claude CLI error: ${errorMessage}`)\n\t}\n}\n\n/**\n * Launch Claude in a new terminal window with rich context\n * This is specifically for \"end of il start\" workflow\n * Ports the terminal window opening, coloring, and .env sourcing behavior\n */\nexport async function launchClaudeInNewTerminalWindow(\n\t_prompt: string,\n\toptions: ClaudeCliOptions & {\n\t\tworkspacePath: string // Required for terminal window launch\n\t}\n): Promise<void> {\n\tconst { workspacePath, branchName, oneShot = 'default', port, setArguments, executablePath } = options\n\n\t// Verify required parameter\n\tif (!workspacePath) {\n\t\tthrow new Error('workspacePath is required for terminal window launch')\n\t}\n\n\t// Build launch command with optional --one-shot flag\n\t// Use provided executable path or fallback to 'il'\n\tconst executable = executablePath ?? 'iloom'\n\tlet launchCommand = `${executable} spin`\n\tif (oneShot !== 'default') {\n\t\tlaunchCommand += ` --one-shot=${oneShot}`\n\t}\n\n\t// Append --set arguments if provided\n\tif (setArguments && setArguments.length > 0) {\n\t\tfor (const setArg of setArguments) {\n\t\t\tlaunchCommand += ` --set ${setArg}`\n\t\t}\n\t}\n\n\t// Apply terminal background color if branch name available\n\tlet backgroundColor: { r: number; g: number; b: number } | undefined\n\tif (branchName) {\n\t\ttry {\n\t\t\tconst { generateColorFromBranchName } = await import('./color.js')\n\t\t\tconst colorData = generateColorFromBranchName(branchName)\n\t\t\tbackgroundColor = colorData.rgb\n\t\t} catch (error) {\n\t\t\tlogger.warn(\n\t\t\t\t`Failed to generate terminal color: ${error instanceof Error ? error.message : 'Unknown error'}`\n\t\t\t)\n\t\t}\n\t}\n\n\t// Check if .env file exists in workspace\n\tconst hasEnvFile = existsSync(join(workspacePath, '.env'))\n\n\t// Open new terminal window with Claude\n\tawait openTerminalWindow({\n\t\tworkspacePath,\n\t\tcommand: launchCommand,\n\t\t...(backgroundColor && { backgroundColor }),\n\t\tincludeEnvSetup: hasEnvFile, // source .env only if it exists\n\t\t...(port !== undefined && { port, includePortExport: true }),\n\t})\n}\n\n/**\n * Generate a branch name using Claude with fallback\n * This matches the implementation that was working in ClaudeBranchNameStrategy\n */\nexport async function generateBranchName(\n\tissueTitle: string,\n\tissueNumber: string | number,\n\tmodel: string = 'haiku'\n): Promise<string> {\n\ttry {\n\t\t// Check if Claude CLI is available\n\t\tconst isAvailable = await detectClaudeCli()\n\t\tif (!isAvailable) {\n\t\t\tlogger.warn('Claude CLI not available, using fallback branch name')\n\t\t\treturn `feat/issue-${issueNumber}`\n\t\t}\n\n\t\tlogger.debug('Generating branch name with Claude', { issueNumber, issueTitle })\n\n\t\t// Use the proven prompt format from ClaudeBranchNameStrategy\n\t\tconst prompt = `<Task>\nGenerate a git branch name for the following issue:\n<Issue>\n<IssueNumber>${issueNumber}</IssueNumber>\n<IssueTitle>${issueTitle}</IssueTitle>\n</Issue>\n\n<Requirements>\n<IssueNumber>Must use this exact issue number: ${issueNumber}</IssueNumber>\n<Format>Format must be: {prefix}/issue-${issueNumber}__{description}</Format>\n<Prefix>Prefix must be one of: feat, fix, docs, refactor, test, chore</Prefix>\n<MaxLength>Maximum 50 characters total</MaxLength>\n<Characters>Only lowercase letters, numbers, and hyphens allowed</Characters>\n<Output>Reply with ONLY the branch name, nothing else</Output>\n</Requirements>\n</Task>`\n\n\t\tlogger.debug('Sending prompt to Claude', { prompt })\n\n\t\tconst result = (await launchClaude(prompt, {\n\t\t\tmodel,\n\t\t\theadless: true,\n\t\t})) as string\n\n\t\t// Normalize to lowercase for consistency (Linear IDs are uppercase but branches should be lowercase)\n\t\tconst branchName = result.trim().toLowerCase()\n\t\tlogger.debug('Claude returned branch name', { branchName, issueNumber })\n\n\t\t// Validate generated name using same validation as ClaudeBranchNameStrategy\n\t\tif (!branchName || !isValidBranchName(branchName, issueNumber)) {\n\t\t\tlogger.warn('Invalid branch name from Claude, using fallback', { branchName })\n\t\t\treturn `feat/issue-${issueNumber}`.toLowerCase()\n\t\t}\n\n\t\treturn branchName\n\t} catch (error) {\n\t\tlogger.warn('Failed to generate branch name with Claude', { error })\n\t\treturn `feat/issue-${issueNumber}`.toLowerCase()\n\t}\n}\n\n/**\n * Validate branch name format\n * Check format: {prefix}/issue-{number}__{description}\n * Uses case-insensitive matching for issue number (Linear uses uppercase like MARK-1)\n */\nfunction isValidBranchName(name: string, issueNumber: string | number): boolean {\n\tconst pattern = new RegExp(`^(feat|fix|docs|refactor|test|chore)/issue-${issueNumber}__[a-z0-9-]+$`, 'i')\n\treturn pattern.test(name) && name.length <= 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package/dist/{claude-GOP6PFC7.js → claude-KIZYXTSG.js}

@@ -5,7 +5,9 @@ import {
   getClaudeVersion,
   launchClaude,
   launchClaudeInNewTerminalWindow
-} from "./chunk-XXV3UFZL.js";
+} from "./chunk-ZLIHIUDQ.js";
+import "./chunk-RW54ZMBM.js";
+import "./chunk-UJL4HI2R.js";
 import "./chunk-GEHQXLEI.js";
 export {
   detectClaudeCli,
@@ -14,4 +16,4 @@ export {
   launchClaude,
   launchClaudeInNewTerminalWindow
 };
-//# sourceMappingURL=claude-GOP6PFC7.js.map
+//# sourceMappingURL=claude-KIZYXTSG.js.map

package/dist/{cleanup-7RWLBSLE.js → cleanup-6WYUD5SN.js}

@@ -5,30 +5,32 @@ import {
   EnvironmentManager,
   LoomManager,
   ResourceCleanup
-} from "./chunk-5EF7Z346.js";
+} from "./chunk-KG343GSG.js";
 import {
-  IdentifierParser,
-  loadEnvIntoProcess
-} from "./chunk-IP7SMKIF.js";
+  IdentifierParser
+} from "./chunk-OXAM2WVC.js";
 import {
   ProcessManager
 } from "./chunk-VU3QMIP2.js";
-import {
-  createNeonProviderFromSettings
-} from "./chunk-JQFO7QQN.js";
 import {
   GitWorktreeManager
-} from "./chunk-4HHRTA7Q.js";
+} from "./chunk-OAP6SASD.js";
 import "./chunk-ZT3YZB4K.js";
 import "./chunk-2ZPFJQ3B.js";
+import {
+  createNeonProviderFromSettings
+} from "./chunk-GVICXJHW.js";
+import "./chunk-5NTD4MCZ.js";
 import {
   SettingsManager
-} from "./chunk-ML3NRPNB.js";
-import "./chunk-MAVL6PJF.js";
+} from "./chunk-UCZ24SUE.js";
 import {
   promptConfirmation
 } from "./chunk-JKXJ7BGL.js";
 import "./chunk-ZZZWQGTS.js";
+import {
+  loadEnvIntoProcess
+} from "./chunk-UJL4HI2R.js";
 import {
   logger
 } from "./chunk-GEHQXLEI.js";
@@ -71,10 +73,10 @@ var CleanupCommand = class {
       cliIsolationManager
     );
     if (!this.loomManager) {
-      const { GitHubService } = await import("./GitHubService-EBOETDIW.js");
-      const { ClaudeContextManager } = await import("./ClaudeContextManager-MUQSDY2E.js");
+      const { GitHubService } = await import("./GitHubService-UAMH7DMF.js");
+      const { ClaudeContextManager } = await import("./ClaudeContextManager-5WPRJIIW.js");
       const { ProjectCapabilityDetector } = await import("./ProjectCapabilityDetector-34LU7JJ4.js");
-      const { DefaultBranchNamingService } = await import("./BranchNamingService-3OQPRSWT.js");
+      const { DefaultBranchNamingService } = await import("./BranchNamingService-JYO746H7.js");
       this.loomManager = new LoomManager(
         this.gitWorktreeManager,
         new GitHubService(),
@@ -268,7 +270,7 @@ var CleanupCommand = class {
     const { force, dryRun } = parsed.options;
     let parsedInput = await this.identifierParser.parseForPatternDetection(identifier);
     if (parsedInput.type === "branch" && parsedInput.branchName) {
-      const { extractIssueNumber } = await import("./git-TDXKRTXM.js");
+      const { extractIssueNumber } = await import("./git-TAFVDB3J.js");
       const extractedNumber = extractIssueNumber(parsedInput.branchName);
       if (extractedNumber !== null) {
         parsedInput = {
@@ -360,8 +362,8 @@ var CleanupCommand = class {
     const worktrees = await this.gitWorktreeManager.listWorktrees();
     const matchingWorktrees = worktrees.filter((wt) => {
       const path = wt.path.toLowerCase();
-      const numStr = String(issueNumber);
-      const pattern = new RegExp(`(?<!\\d)${numStr}(?!\\d)`);
+      const idStr = String(issueNumber).toLowerCase();
+      const pattern = new RegExp(`(?:^|[/_-])${idStr}(?:[/_-]|$)`);
       return pattern.test(path);
     });
     if (matchingWorktrees.length === 0) {
@@ -466,4 +468,4 @@ var CleanupCommand = class {
 export {
   CleanupCommand
 };
-//# sourceMappingURL=cleanup-7RWLBSLE.js.map
+//# sourceMappingURL=cleanup-6WYUD5SN.js.map

package/dist/{cleanup-7RWLBSLE.js.map → cleanup-6WYUD5SN.js.map}

@@ -1 +1 @@
-{"version":3,"sources":["../src/commands/cleanup.ts"],"sourcesContent":["import { logger } from '../utils/logger.js'\nimport { GitWorktreeManager } from '../lib/GitWorktreeManager.js'\nimport { ResourceCleanup } from '../lib/ResourceCleanup.js'\nimport { ProcessManager } from '../lib/process/ProcessManager.js'\nimport { DatabaseManager } from '../lib/DatabaseManager.js'\nimport { EnvironmentManager } from '../lib/EnvironmentManager.js'\nimport { CLIIsolationManager } from '../lib/CLIIsolationManager.js'\nimport { SettingsManager } from '../lib/SettingsManager.js'\nimport { promptConfirmation } from '../utils/prompt.js'\nimport { IdentifierParser } from '../utils/IdentifierParser.js'\nimport { loadEnvIntoProcess } from '../utils/env.js'\nimport { createNeonProviderFromSettings } from '../utils/neon-helpers.js'\nimport { LoomManager } from '../lib/LoomManager.js'\nimport type { CleanupOptions } from '../types/index.js'\nimport type { CleanupResult } from '../types/cleanup.js'\nimport type { ParsedInput } from './start.js'\n\n/**\n * Input structure for CleanupCommand.execute()\n */\nexport interface CleanupCommandInput {\n  identifier?: string\n  options: CleanupOptions\n}\n\n/**\n * Parsed and validated cleanup command input\n * Mode determines which cleanup operation to perform\n */\nexport interface ParsedCleanupInput {\n  mode: 'list' | 'single' | 'issue' | 'all'\n  identifier?: string\n  issueNumber?: string | number\n  branchName?: string\n  originalInput?: string\n  options: CleanupOptions\n}\n\n/**\n * Manages cleanup command execution with option parsing and validation\n * Follows the command pattern established by StartCommand\n *\n * This implementation handles ONLY parsing, validation, and mode determination.\n * Actual cleanup operations are deferred to subsequent sub-issues.\n */\nexport class CleanupCommand {\n  private readonly gitWorktreeManager: GitWorktreeManager\n  private resourceCleanup?: ResourceCleanup\n  private loomManager?: import('../lib/LoomManager.js').LoomManager\n  private readonly identifierParser: IdentifierParser\n\n  constructor(\n    gitWorktreeManager?: GitWorktreeManager,\n    resourceCleanup?: ResourceCleanup\n  ) {\n    // Load environment variables first\n    const envResult = loadEnvIntoProcess()\n    if (envResult.error) {\n      logger.debug(`Environment loading warning: ${envResult.error.message}`)\n    }\n    if (envResult.parsed) {\n      logger.debug(`Loaded ${Object.keys(envResult.parsed).length} environment variables`)\n    }\n\n    this.gitWorktreeManager = gitWorktreeManager ?? new GitWorktreeManager()\n\n    // Initialize ResourceCleanup with DatabaseManager and CLIIsolationManager\n    // ResourceCleanup will be initialized lazily with proper configuration\n    if (resourceCleanup) {\n      this.resourceCleanup = resourceCleanup\n    }\n\n    // Initialize IdentifierParser for pattern-based detection\n    this.identifierParser = new IdentifierParser(this.gitWorktreeManager)\n  }\n\n  /**\n   * Lazy initialization of ResourceCleanup and LoomManager with properly configured DatabaseManager\n   */\n  private async ensureResourceCleanup(): Promise<void> {\n    if (this.resourceCleanup && this.loomManager) {\n      return\n    }\n\n    const settingsManager = new SettingsManager()\n    const settings = await settingsManager.loadSettings()\n    const databaseUrlEnvVarName = settings.capabilities?.database?.databaseUrlEnvVarName ?? 'DATABASE_URL'\n\n    const environmentManager = new EnvironmentManager()\n    const neonProvider = createNeonProviderFromSettings(settings)\n    const databaseManager = new DatabaseManager(neonProvider, environmentManager, databaseUrlEnvVarName)\n    const cliIsolationManager = new CLIIsolationManager()\n\n    this.resourceCleanup ??= new ResourceCleanup(\n      this.gitWorktreeManager,\n      new ProcessManager(),\n      databaseManager,\n      cliIsolationManager\n    )\n\n    // Initialize LoomManager if not provided (for child loom detection)\n    if (!this.loomManager) {\n      const { GitHubService } = await import('../lib/GitHubService.js')\n      const { ClaudeContextManager } = await import('../lib/ClaudeContextManager.js')\n      const { ProjectCapabilityDetector } = await import('../lib/ProjectCapabilityDetector.js')\n      const { DefaultBranchNamingService } = await import('../lib/BranchNamingService.js')\n\n      this.loomManager = new LoomManager(\n        this.gitWorktreeManager,\n        new GitHubService(),\n        new DefaultBranchNamingService({ useClaude: true }),\n        environmentManager,\n        new ClaudeContextManager(),\n        new ProjectCapabilityDetector(),\n        cliIsolationManager,\n        settingsManager,\n        databaseManager\n      )\n    }\n  }\n\n  /**\n   * Check for child looms and exit gracefully if any exist\n   * Always checks the TARGET loom (the one being cleaned up), not the current directory's loom\n   *\n   * @param parsed - The parsed input identifying the loom being cleaned up\n   */\n  private async checkForChildLooms(parsed: ParsedCleanupInput): Promise<void> {\n    await this.ensureResourceCleanup()\n    if (!this.loomManager) {\n      throw new Error('Failed to initialize LoomManager')\n    }\n\n    // Determine which branch is being cleaned up based on parsed input\n    let targetBranch: string | undefined\n\n    if (parsed.branchName) {\n      targetBranch = parsed.branchName\n    } else if (parsed.mode === 'issue' && parsed.issueNumber !== undefined) {\n      // For issues, try to find the worktree by issue number to get the branch name\n      const worktree = await this.gitWorktreeManager.findWorktreeForIssue(parsed.issueNumber)\n      targetBranch = worktree?.branch\n    }\n\n    // If we can't determine the target branch, skip the check\n    if (!targetBranch) {\n      logger.debug(`Cannot determine target branch for child loom check`)\n      return\n    }\n\n    // Check if the TARGET loom has any child looms\n    const hasChildLooms = await this.loomManager.checkAndWarnChildLooms(targetBranch)\n    if (hasChildLooms) {\n      logger.error('Cannot cleanup loom while child looms exist. Please finish child looms first.')\n      process.exit(1)\n    }\n  }\n\n  /**\n   * Main entry point for the cleanup command\n   * Parses input, validates options, and determines operation mode\n   */\n  public async execute(input: CleanupCommandInput): Promise<void> {\n    try {\n      // Step 1: Parse input and determine mode\n      const parsed = this.parseInput(input)\n\n      // Step 2: Validate option combinations\n      this.validateInput(parsed)\n\n      // Step 2.5: Check for child looms AFTER parsing input\n      // This ensures we only block when cleaning the CURRENT loom (parent), not a child\n      await this.checkForChildLooms(parsed)\n\n      // Step 3: Execute based on mode\n      logger.info(`Cleanup mode: ${parsed.mode}`)\n\n      if (parsed.mode === 'single') {\n        await this.executeSingleCleanup(parsed)\n      } else if (parsed.mode === 'list') {\n        logger.info('Would list all worktrees')  // TODO: Implement in Sub-issue #2\n        logger.success('Command parsing and validation successful')\n      } else if (parsed.mode === 'all') {\n        logger.info('Would remove all worktrees')  // TODO: Implement in Sub-issue #5\n        logger.success('Command parsing and validation successful')\n      } else if (parsed.mode === 'issue') {\n        await this.executeIssueCleanup(parsed)\n      }\n    } catch (error) {\n      if (error instanceof Error) {\n        logger.error(`${error.message}`)\n      } else {\n        logger.error('An unknown error occurred')\n      }\n      throw error\n    }\n  }\n\n  /**\n   * Parse input to determine cleanup mode and extract relevant data\n   * Implements auto-detection: numeric input = issue number, non-numeric = branch name\n   *\n   * @private\n   */\n  private parseInput(input: CleanupCommandInput): ParsedCleanupInput {\n    const { identifier, options } = input\n\n    // Trim identifier if present\n    const trimmedIdentifier = identifier?.trim() ?? undefined\n\n    // Mode: List (takes priority - it's informational only)\n    if (options.list) {\n      const result: ParsedCleanupInput = {\n        mode: 'list',\n        options\n      }\n      if (trimmedIdentifier) {\n        result.identifier = trimmedIdentifier\n      }\n      return result\n    }\n\n    // Mode: All (remove everything)\n    if (options.all) {\n      const result: ParsedCleanupInput = {\n        mode: 'all',\n        options\n      }\n      if (trimmedIdentifier) {\n        result.identifier = trimmedIdentifier\n      }\n      if (options.issue !== undefined) {\n        result.issueNumber = options.issue\n      }\n      return result\n    }\n\n    // Mode: Explicit issue number via --issue flag\n    if (options.issue !== undefined) {\n      // Need to determine if identifier is branch or numeric to set branchName\n      if (trimmedIdentifier) {\n        const numericPattern = /^[0-9]+$/\n        if (!numericPattern.test(trimmedIdentifier)) {\n          // Identifier is a branch name with explicit --issue flag\n          return {\n            mode: 'issue',\n            issueNumber: options.issue,\n            branchName: trimmedIdentifier,\n            identifier: trimmedIdentifier,\n            originalInput: trimmedIdentifier,\n            options\n          }\n        }\n      }\n      const result: ParsedCleanupInput = {\n        mode: 'issue',\n        issueNumber: options.issue,\n        options\n      }\n      if (trimmedIdentifier) {\n        result.identifier = trimmedIdentifier\n      }\n      return result\n    }\n\n    // Mode: Auto-detect from identifier\n    if (!trimmedIdentifier) {\n      throw new Error('Missing required argument: identifier. Use --all to remove all worktrees or --list to list them.')\n    }\n\n    // Auto-detection: Check if identifier is purely numeric\n    // Pattern from bash script line 364: ^[0-9]+$\n    const numericPattern = /^[0-9]+$/\n    if (numericPattern.test(trimmedIdentifier)) {\n      // Numeric input = issue number\n      return {\n        mode: 'issue',\n        issueNumber: parseInt(trimmedIdentifier, 10),\n        identifier: trimmedIdentifier,\n        originalInput: trimmedIdentifier,\n        options\n      }\n    } else {\n      // Non-numeric = branch name\n      return {\n        mode: 'single',\n        branchName: trimmedIdentifier,\n        identifier: trimmedIdentifier,\n        originalInput: trimmedIdentifier,\n        options\n      }\n    }\n  }\n\n  /**\n   * Validate parsed input for option conflicts\n   * Throws descriptive errors for invalid option combinations\n   *\n   * @private\n   */\n  private validateInput(parsed: ParsedCleanupInput): void {\n    const { mode, options, branchName } = parsed\n\n    // Conflict: --list is informational only, incompatible with destructive operations\n    if (mode === 'list') {\n      if (options.all) {\n        throw new Error('Cannot use --list with --all (list is informational only)')\n      }\n      if (options.issue !== undefined) {\n        throw new Error('Cannot use --list with --issue (list is informational only)')\n      }\n      if (parsed.identifier) {\n        throw new Error('Cannot use --list with a specific identifier (list shows all worktrees)')\n      }\n    }\n\n    // Conflict: --all removes everything, can't combine with specific identifier or --issue\n    if (mode === 'all') {\n      if (parsed.identifier) {\n        throw new Error('Cannot use --all with a specific identifier. Use one or the other.')\n      }\n      if (parsed.issueNumber !== undefined) {\n        throw new Error('Cannot use --all with a specific identifier. Use one or the other.')\n      }\n    }\n\n    // Conflict: explicit --issue flag with branch name identifier\n    // (This prevents confusion when user provides both)\n    if (options.issue !== undefined && branchName) {\n      throw new Error('Cannot use --issue flag with branch name identifier. Use numeric identifier or --issue flag alone.')\n    }\n\n    // Note: --force and --dry-run are compatible with all modes (no conflicts)\n  }\n\n  /**\n   * Execute cleanup for single worktree\n   * Implements two-stage confirmation: worktree removal, then branch deletion\n   * Uses IdentifierParser for pattern-based detection without GitHub API calls\n   */\n  private async executeSingleCleanup(parsed: ParsedCleanupInput): Promise<void> {\n    const identifier = parsed.branchName ?? parsed.identifier ?? ''\n    if (!identifier) {\n      throw new Error('No identifier found for cleanup')\n    }\n    const { force, dryRun } = parsed.options\n\n    // Step 1: Parse identifier using pattern-based detection\n    let parsedInput: ParsedInput = await this.identifierParser.parseForPatternDetection(identifier)\n\n    // If type is 'branch', try to extract issue number for CLI symlink cleanup\n    if (parsedInput.type === 'branch' && parsedInput.branchName) {\n      const { extractIssueNumber } = await import('../utils/git.js')\n      const extractedNumber = extractIssueNumber(parsedInput.branchName)\n      if (extractedNumber !== null) {\n        parsedInput = {\n          ...parsedInput,\n          number: extractedNumber  // Add number for CLI symlink cleanup\n        }\n      }\n    }\n\n    // Step 2: Display worktree details\n    logger.info(`Preparing to cleanup worktree: ${identifier}`)\n\n    // Step 3: Confirmation - worktree removal\n    if (!force) {\n      const confirmWorktree = await promptConfirmation('Remove this worktree?', true)\n      if (!confirmWorktree) {\n        logger.info('Cleanup cancelled')\n        return\n      }\n    }\n\n    // Step 4: Execute worktree cleanup (includes safety validation)\n    // With --force, delete branch automatically; otherwise handle separately\n    await this.ensureResourceCleanup()\n    if (!this.resourceCleanup) {\n      throw new Error('Failed to initialize ResourceCleanup')\n    }\n    const cleanupResult = await this.resourceCleanup.cleanupWorktree(parsedInput, {\n      dryRun: dryRun ?? false,\n      force: force ?? false,\n      deleteBranch: force ?? false,  // Delete branch immediately if --force, otherwise prompt later\n      keepDatabase: false,\n    })\n\n    // Step 5: Report cleanup results\n    this.reportCleanupResults(cleanupResult)\n\n    // Step 6: Second confirmation - branch deletion (only if not forced and worktree cleanup succeeded)\n    if (cleanupResult.success && !force && cleanupResult.branchName) {\n      const confirmBranch = await promptConfirmation('Also delete the git branch?', true)\n      if (confirmBranch) {\n        await this.deleteBranchForCleanup(cleanupResult.branchName, { force: force ?? false, dryRun: dryRun ?? false })\n      }\n    }\n\n    // Final success message\n    if (cleanupResult.success) {\n      logger.success('Cleanup completed successfully')\n    } else {\n      logger.warn('Cleanup completed with errors - see details above')\n    }\n  }\n\n  /**\n   * Delete branch as part of cleanup operation\n   */\n  private async deleteBranchForCleanup(\n    branchName: string,\n    options: { force?: boolean; dryRun?: boolean }\n  ): Promise<void> {\n    try {\n      await this.ensureResourceCleanup()\n      if (!this.resourceCleanup) {\n        throw new Error('Failed to initialize ResourceCleanup')\n      }\n      await this.resourceCleanup.deleteBranch(branchName, options)\n      logger.success(`Branch deleted: ${branchName}`)\n    } catch (error) {\n      if (error instanceof Error) {\n        logger.error(`Failed to delete branch: ${error.message}`)\n      }\n      // Don't throw - branch deletion is optional/secondary operation\n    }\n  }\n\n  /**\n   * Report cleanup operation results to user\n   */\n  private reportCleanupResults(result: CleanupResult): void {\n    logger.info('Cleanup operations:')\n\n    result.operations.forEach(op => {\n      const status = op.success ? '✓' : '✗'\n      const message = op.error ? `${op.message}: ${op.error}` : op.message\n\n      if (op.success) {\n        logger.info(`  ${status} ${message}`)\n      } else {\n        logger.error(`  ${status} ${message}`)\n      }\n    })\n\n    if (result.errors.length > 0) {\n      logger.warn(`${result.errors.length} error(s) occurred during cleanup`)\n    }\n  }\n\n  /**\n   * Execute cleanup for all worktrees associated with an issue or PR number\n   * Searches for worktrees by their path patterns (e.g., issue-25, pr-25, 25-feature, _pr_25)\n   * Implements bash cleanup-worktree.sh remove_worktrees_by_issue() (lines 157-242)\n   */\n  private async executeIssueCleanup(parsed: ParsedCleanupInput): Promise<void> {\n    const issueNumber = parsed.issueNumber\n    if (issueNumber === undefined) {\n      throw new Error('No issue/PR number provided for cleanup')\n    }\n\n    const { force, dryRun } = parsed.options\n\n    logger.info(`Finding worktrees related to GitHub issue/PR #${issueNumber}...`)\n\n    // Step 1: Get all worktrees and filter by path pattern\n    const worktrees = await this.gitWorktreeManager.listWorktrees()\n    const matchingWorktrees = worktrees.filter(wt => {\n      const path = wt.path.toLowerCase()\n      const numStr = String(issueNumber)\n\n      // Check if path contains the number with proper word boundaries\n      // Matches: issue-25, pr-25, 25-feature, _pr_25, etc.\n      // Does NOT match: issue-250, 125-feature (where 25 is part of a larger number)\n      const pattern = new RegExp(`(?<!\\\\d)${numStr}(?!\\\\d)`)\n      return pattern.test(path)\n    })\n\n    if (matchingWorktrees.length === 0) {\n      logger.warn(`No worktrees found for GitHub issue/PR #${issueNumber}`)\n      logger.info(`Searched for worktree paths containing: ${issueNumber}, _pr_${issueNumber}, issue-${issueNumber}, etc.`)\n      return\n    }\n\n    // Step 2: Build targets list from matching worktrees\n    const targets: Array<{ branchName: string; hasWorktree: boolean; worktreePath?: string }> =\n      matchingWorktrees.map(wt => ({\n        branchName: wt.branch,\n        hasWorktree: true,\n        worktreePath: wt.path\n      }))\n\n    // Step 3: Display preview\n    logger.info(`Found ${targets.length} worktree(s) related to issue/PR #${issueNumber}:`)\n    for (const target of targets) {\n      logger.info(`  🌿 ${target.branchName} (${target.worktreePath})`)\n    }\n\n    // Step 4: Batch confirmation (unless --force)\n    if (!force) {\n      const confirmCleanup = await promptConfirmation(\n        `Remove ${targets.length} worktree(s)?`,\n        true\n      )\n      if (!confirmCleanup) {\n        logger.info('Cleanup cancelled')\n        return\n      }\n    }\n\n    // Step 5: Process each target sequentially\n    let worktreesRemoved = 0\n    let branchesDeleted = 0\n    const databaseBranchesDeletedList: string[] = []\n    let failed = 0\n\n    for (const target of targets) {\n      logger.info(`Processing worktree: ${target.branchName}`)\n\n      // Cleanup worktree using ResourceCleanup with ParsedInput\n      try {\n        // Use the known issue number directly instead of parsing from branch name\n        // This ensures CLI symlinks (created with issue number) are properly cleaned up\n        const parsedInput: ParsedInput = {\n          type: 'issue',\n          number: issueNumber,  // Use the known issue number, not parsed from branch\n          branchName: target.branchName,\n          originalInput: String(issueNumber)\n        }\n\n        await this.ensureResourceCleanup()\n        if (!this.resourceCleanup) {\n          throw new Error('Failed to initialize ResourceCleanup')\n        }\n        const result = await this.resourceCleanup.cleanupWorktree(parsedInput, {\n          dryRun: dryRun ?? false,\n          force: force ?? false,\n          deleteBranch: false, // Handle branch deletion separately\n          keepDatabase: false\n        })\n\n        if (result.success) {\n          worktreesRemoved++\n          logger.success(`  Worktree removed: ${target.branchName}`)\n\n          // Check if database branch was actually deleted (use explicit deleted field)\n          const dbOperation = result.operations.find(op => op.type === 'database')\n          if (dbOperation?.deleted) {\n            // Get branch name from result or use the target branch name\n            const deletedBranchName = target.branchName\n            databaseBranchesDeletedList.push(deletedBranchName)\n          }\n        } else {\n          failed++\n          logger.error(`  Failed to remove worktree: ${target.branchName}`)\n        }\n      } catch (error) {\n        failed++\n        const errMsg = error instanceof Error ? error.message : 'Unknown error'\n        logger.error(`  Failed to remove worktree: ${errMsg}`)\n        continue // Continue with next worktree even if this one failed\n      }\n\n      // Step 6: Delete branch\n      try {\n        await this.ensureResourceCleanup()\n        if (!this.resourceCleanup) {\n          throw new Error('Failed to initialize ResourceCleanup')\n        }\n        await this.resourceCleanup.deleteBranch(target.branchName, {\n          force: force ?? false,\n          dryRun: dryRun ?? false\n        })\n        branchesDeleted++\n        logger.success(`  Branch deleted: ${target.branchName}`)\n      } catch (error) {\n        // Don't count unmerged branch as failure - it's a safety feature\n        const errMsg = error instanceof Error ? error.message : String(error)\n        if (errMsg.includes('not fully merged')) {\n          logger.warn(`  Branch not fully merged, skipping deletion`)\n          logger.warn(`  Use --force to delete anyway`)\n        } else {\n          // Other errors are real failures\n          logger.error(`  Failed to delete branch: ${errMsg}`)\n        }\n      }\n    }\n\n    // Step 7: Report statistics\n    logger.success(`Completed cleanup for issue/PR #${issueNumber}:`)\n    logger.info(`   📁 Worktrees removed: ${worktreesRemoved}`)\n    logger.info(`   🌿 Branches deleted: ${branchesDeleted}`)\n    if (databaseBranchesDeletedList.length > 0) {\n      // Display branch names in the format requested\n      logger.info(`   🗂️ Database branches deleted: ${databaseBranchesDeletedList.join(', ')}`)\n    }\n    if (failed > 0) {\n      logger.warn(`   ❌ Failed operations: ${failed}`)\n    }\n  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+{"version":3,"sources":["../src/commands/cleanup.ts"],"sourcesContent":["import { logger } from '../utils/logger.js'\nimport { GitWorktreeManager } from '../lib/GitWorktreeManager.js'\nimport { ResourceCleanup } from '../lib/ResourceCleanup.js'\nimport { ProcessManager } from '../lib/process/ProcessManager.js'\nimport { DatabaseManager } from '../lib/DatabaseManager.js'\nimport { EnvironmentManager } from '../lib/EnvironmentManager.js'\nimport { CLIIsolationManager } from '../lib/CLIIsolationManager.js'\nimport { SettingsManager } from '../lib/SettingsManager.js'\nimport { promptConfirmation } from '../utils/prompt.js'\nimport { IdentifierParser } from '../utils/IdentifierParser.js'\nimport { loadEnvIntoProcess } from '../utils/env.js'\nimport { createNeonProviderFromSettings } from '../utils/neon-helpers.js'\nimport { LoomManager } from '../lib/LoomManager.js'\nimport type { CleanupOptions } from '../types/index.js'\nimport type { CleanupResult } from '../types/cleanup.js'\nimport type { ParsedInput } from './start.js'\n\n/**\n * Input structure for CleanupCommand.execute()\n */\nexport interface CleanupCommandInput {\n  identifier?: string\n  options: CleanupOptions\n}\n\n/**\n * Parsed and validated cleanup command input\n * Mode determines which cleanup operation to perform\n */\nexport interface ParsedCleanupInput {\n  mode: 'list' | 'single' | 'issue' | 'all'\n  identifier?: string\n  issueNumber?: string | number\n  branchName?: string\n  originalInput?: string\n  options: CleanupOptions\n}\n\n/**\n * Manages cleanup command execution with option parsing and validation\n * Follows the command pattern established by StartCommand\n *\n * This implementation handles ONLY parsing, validation, and mode determination.\n * Actual cleanup operations are deferred to subsequent sub-issues.\n */\nexport class CleanupCommand {\n  private readonly gitWorktreeManager: GitWorktreeManager\n  private resourceCleanup?: ResourceCleanup\n  private loomManager?: import('../lib/LoomManager.js').LoomManager\n  private readonly identifierParser: IdentifierParser\n\n  constructor(\n    gitWorktreeManager?: GitWorktreeManager,\n    resourceCleanup?: ResourceCleanup\n  ) {\n    // Load environment variables first\n    const envResult = loadEnvIntoProcess()\n    if (envResult.error) {\n      logger.debug(`Environment loading warning: ${envResult.error.message}`)\n    }\n    if (envResult.parsed) {\n      logger.debug(`Loaded ${Object.keys(envResult.parsed).length} environment variables`)\n    }\n\n    this.gitWorktreeManager = gitWorktreeManager ?? new GitWorktreeManager()\n\n    // Initialize ResourceCleanup with DatabaseManager and CLIIsolationManager\n    // ResourceCleanup will be initialized lazily with proper configuration\n    if (resourceCleanup) {\n      this.resourceCleanup = resourceCleanup\n    }\n\n    // Initialize IdentifierParser for pattern-based detection\n    this.identifierParser = new IdentifierParser(this.gitWorktreeManager)\n  }\n\n  /**\n   * Lazy initialization of ResourceCleanup and LoomManager with properly configured DatabaseManager\n   */\n  private async ensureResourceCleanup(): Promise<void> {\n    if (this.resourceCleanup && this.loomManager) {\n      return\n    }\n\n    const settingsManager = new SettingsManager()\n    const settings = await settingsManager.loadSettings()\n    const databaseUrlEnvVarName = settings.capabilities?.database?.databaseUrlEnvVarName ?? 'DATABASE_URL'\n\n    const environmentManager = new EnvironmentManager()\n    const neonProvider = createNeonProviderFromSettings(settings)\n    const databaseManager = new DatabaseManager(neonProvider, environmentManager, databaseUrlEnvVarName)\n    const cliIsolationManager = new CLIIsolationManager()\n\n    this.resourceCleanup ??= new ResourceCleanup(\n      this.gitWorktreeManager,\n      new ProcessManager(),\n      databaseManager,\n      cliIsolationManager\n    )\n\n    // Initialize LoomManager if not provided (for child loom detection)\n    if (!this.loomManager) {\n      const { GitHubService } = await import('../lib/GitHubService.js')\n      const { ClaudeContextManager } = await import('../lib/ClaudeContextManager.js')\n      const { ProjectCapabilityDetector } = await import('../lib/ProjectCapabilityDetector.js')\n      const { DefaultBranchNamingService } = await import('../lib/BranchNamingService.js')\n\n      this.loomManager = new LoomManager(\n        this.gitWorktreeManager,\n        new GitHubService(),\n        new DefaultBranchNamingService({ useClaude: true }),\n        environmentManager,\n        new ClaudeContextManager(),\n        new ProjectCapabilityDetector(),\n        cliIsolationManager,\n        settingsManager,\n        databaseManager\n      )\n    }\n  }\n\n  /**\n   * Check for child looms and exit gracefully if any exist\n   * Always checks the TARGET loom (the one being cleaned up), not the current directory's loom\n   *\n   * @param parsed - The parsed input identifying the loom being cleaned up\n   */\n  private async checkForChildLooms(parsed: ParsedCleanupInput): Promise<void> {\n    await this.ensureResourceCleanup()\n    if (!this.loomManager) {\n      throw new Error('Failed to initialize LoomManager')\n    }\n\n    // Determine which branch is being cleaned up based on parsed input\n    let targetBranch: string | undefined\n\n    if (parsed.branchName) {\n      targetBranch = parsed.branchName\n    } else if (parsed.mode === 'issue' && parsed.issueNumber !== undefined) {\n      // For issues, try to find the worktree by issue number to get the branch name\n      const worktree = await this.gitWorktreeManager.findWorktreeForIssue(parsed.issueNumber)\n      targetBranch = worktree?.branch\n    }\n\n    // If we can't determine the target branch, skip the check\n    if (!targetBranch) {\n      logger.debug(`Cannot determine target branch for child loom check`)\n      return\n    }\n\n    // Check if the TARGET loom has any child looms\n    const hasChildLooms = await this.loomManager.checkAndWarnChildLooms(targetBranch)\n    if (hasChildLooms) {\n      logger.error('Cannot cleanup loom while child looms exist. Please finish child looms first.')\n      process.exit(1)\n    }\n  }\n\n  /**\n   * Main entry point for the cleanup command\n   * Parses input, validates options, and determines operation mode\n   */\n  public async execute(input: CleanupCommandInput): Promise<void> {\n    try {\n      // Step 1: Parse input and determine mode\n      const parsed = this.parseInput(input)\n\n      // Step 2: Validate option combinations\n      this.validateInput(parsed)\n\n      // Step 2.5: Check for child looms AFTER parsing input\n      // This ensures we only block when cleaning the CURRENT loom (parent), not a child\n      await this.checkForChildLooms(parsed)\n\n      // Step 3: Execute based on mode\n      logger.info(`Cleanup mode: ${parsed.mode}`)\n\n      if (parsed.mode === 'single') {\n        await this.executeSingleCleanup(parsed)\n      } else if (parsed.mode === 'list') {\n        logger.info('Would list all worktrees')  // TODO: Implement in Sub-issue #2\n        logger.success('Command parsing and validation successful')\n      } else if (parsed.mode === 'all') {\n        logger.info('Would remove all worktrees')  // TODO: Implement in Sub-issue #5\n        logger.success('Command parsing and validation successful')\n      } else if (parsed.mode === 'issue') {\n        await this.executeIssueCleanup(parsed)\n      }\n    } catch (error) {\n      if (error instanceof Error) {\n        logger.error(`${error.message}`)\n      } else {\n        logger.error('An unknown error occurred')\n      }\n      throw error\n    }\n  }\n\n  /**\n   * Parse input to determine cleanup mode and extract relevant data\n   * Implements auto-detection: numeric input = issue number, non-numeric = branch name\n   *\n   * @private\n   */\n  private parseInput(input: CleanupCommandInput): ParsedCleanupInput {\n    const { identifier, options } = input\n\n    // Trim identifier if present\n    const trimmedIdentifier = identifier?.trim() ?? undefined\n\n    // Mode: List (takes priority - it's informational only)\n    if (options.list) {\n      const result: ParsedCleanupInput = {\n        mode: 'list',\n        options\n      }\n      if (trimmedIdentifier) {\n        result.identifier = trimmedIdentifier\n      }\n      return result\n    }\n\n    // Mode: All (remove everything)\n    if (options.all) {\n      const result: ParsedCleanupInput = {\n        mode: 'all',\n        options\n      }\n      if (trimmedIdentifier) {\n        result.identifier = trimmedIdentifier\n      }\n      if (options.issue !== undefined) {\n        result.issueNumber = options.issue\n      }\n      return result\n    }\n\n    // Mode: Explicit issue number via --issue flag\n    if (options.issue !== undefined) {\n      // Need to determine if identifier is branch or numeric to set branchName\n      if (trimmedIdentifier) {\n        const numericPattern = /^[0-9]+$/\n        if (!numericPattern.test(trimmedIdentifier)) {\n          // Identifier is a branch name with explicit --issue flag\n          return {\n            mode: 'issue',\n            issueNumber: options.issue,\n            branchName: trimmedIdentifier,\n            identifier: trimmedIdentifier,\n            originalInput: trimmedIdentifier,\n            options\n          }\n        }\n      }\n      const result: ParsedCleanupInput = {\n        mode: 'issue',\n        issueNumber: options.issue,\n        options\n      }\n      if (trimmedIdentifier) {\n        result.identifier = trimmedIdentifier\n      }\n      return result\n    }\n\n    // Mode: Auto-detect from identifier\n    if (!trimmedIdentifier) {\n      throw new Error('Missing required argument: identifier. Use --all to remove all worktrees or --list to list them.')\n    }\n\n    // Auto-detection: Check if identifier is purely numeric\n    // Pattern from bash script line 364: ^[0-9]+$\n    const numericPattern = /^[0-9]+$/\n    if (numericPattern.test(trimmedIdentifier)) {\n      // Numeric input = issue number\n      return {\n        mode: 'issue',\n        issueNumber: parseInt(trimmedIdentifier, 10),\n        identifier: trimmedIdentifier,\n        originalInput: trimmedIdentifier,\n        options\n      }\n    } else {\n      // Non-numeric = branch name\n      return {\n        mode: 'single',\n        branchName: trimmedIdentifier,\n        identifier: trimmedIdentifier,\n        originalInput: trimmedIdentifier,\n        options\n      }\n    }\n  }\n\n  /**\n   * Validate parsed input for option conflicts\n   * Throws descriptive errors for invalid option combinations\n   *\n   * @private\n   */\n  private validateInput(parsed: ParsedCleanupInput): void {\n    const { mode, options, branchName } = parsed\n\n    // Conflict: --list is informational only, incompatible with destructive operations\n    if (mode === 'list') {\n      if (options.all) {\n        throw new Error('Cannot use --list with --all (list is informational only)')\n      }\n      if (options.issue !== undefined) {\n        throw new Error('Cannot use --list with --issue (list is informational only)')\n      }\n      if (parsed.identifier) {\n        throw new Error('Cannot use --list with a specific identifier (list shows all worktrees)')\n      }\n    }\n\n    // Conflict: --all removes everything, can't combine with specific identifier or --issue\n    if (mode === 'all') {\n      if (parsed.identifier) {\n        throw new Error('Cannot use --all with a specific identifier. Use one or the other.')\n      }\n      if (parsed.issueNumber !== undefined) {\n        throw new Error('Cannot use --all with a specific identifier. Use one or the other.')\n      }\n    }\n\n    // Conflict: explicit --issue flag with branch name identifier\n    // (This prevents confusion when user provides both)\n    if (options.issue !== undefined && branchName) {\n      throw new Error('Cannot use --issue flag with branch name identifier. Use numeric identifier or --issue flag alone.')\n    }\n\n    // Note: --force and --dry-run are compatible with all modes (no conflicts)\n  }\n\n  /**\n   * Execute cleanup for single worktree\n   * Implements two-stage confirmation: worktree removal, then branch deletion\n   * Uses IdentifierParser for pattern-based detection without GitHub API calls\n   */\n  private async executeSingleCleanup(parsed: ParsedCleanupInput): Promise<void> {\n    const identifier = parsed.branchName ?? parsed.identifier ?? ''\n    if (!identifier) {\n      throw new Error('No identifier found for cleanup')\n    }\n    const { force, dryRun } = parsed.options\n\n    // Step 1: Parse identifier using pattern-based detection\n    let parsedInput: ParsedInput = await this.identifierParser.parseForPatternDetection(identifier)\n\n    // If type is 'branch', try to extract issue number for CLI symlink cleanup\n    if (parsedInput.type === 'branch' && parsedInput.branchName) {\n      const { extractIssueNumber } = await import('../utils/git.js')\n      const extractedNumber = extractIssueNumber(parsedInput.branchName)\n      if (extractedNumber !== null) {\n        parsedInput = {\n          ...parsedInput,\n          number: extractedNumber  // Add number for CLI symlink cleanup\n        }\n      }\n    }\n\n    // Step 2: Display worktree details\n    logger.info(`Preparing to cleanup worktree: ${identifier}`)\n\n    // Step 3: Confirmation - worktree removal\n    if (!force) {\n      const confirmWorktree = await promptConfirmation('Remove this worktree?', true)\n      if (!confirmWorktree) {\n        logger.info('Cleanup cancelled')\n        return\n      }\n    }\n\n    // Step 4: Execute worktree cleanup (includes safety validation)\n    // With --force, delete branch automatically; otherwise handle separately\n    await this.ensureResourceCleanup()\n    if (!this.resourceCleanup) {\n      throw new Error('Failed to initialize ResourceCleanup')\n    }\n    const cleanupResult = await this.resourceCleanup.cleanupWorktree(parsedInput, {\n      dryRun: dryRun ?? false,\n      force: force ?? false,\n      deleteBranch: force ?? false,  // Delete branch immediately if --force, otherwise prompt later\n      keepDatabase: false,\n    })\n\n    // Step 5: Report cleanup results\n    this.reportCleanupResults(cleanupResult)\n\n    // Step 6: Second confirmation - branch deletion (only if not forced and worktree cleanup succeeded)\n    if (cleanupResult.success && !force && cleanupResult.branchName) {\n      const confirmBranch = await promptConfirmation('Also delete the git branch?', true)\n      if (confirmBranch) {\n        await this.deleteBranchForCleanup(cleanupResult.branchName, { force: force ?? false, dryRun: dryRun ?? false })\n      }\n    }\n\n    // Final success message\n    if (cleanupResult.success) {\n      logger.success('Cleanup completed successfully')\n    } else {\n      logger.warn('Cleanup completed with errors - see details above')\n    }\n  }\n\n  /**\n   * Delete branch as part of cleanup operation\n   */\n  private async deleteBranchForCleanup(\n    branchName: string,\n    options: { force?: boolean; dryRun?: boolean }\n  ): Promise<void> {\n    try {\n      await this.ensureResourceCleanup()\n      if (!this.resourceCleanup) {\n        throw new Error('Failed to initialize ResourceCleanup')\n      }\n      await this.resourceCleanup.deleteBranch(branchName, options)\n      logger.success(`Branch deleted: ${branchName}`)\n    } catch (error) {\n      if (error instanceof Error) {\n        logger.error(`Failed to delete branch: ${error.message}`)\n      }\n      // Don't throw - branch deletion is optional/secondary operation\n    }\n  }\n\n  /**\n   * Report cleanup operation results to user\n   */\n  private reportCleanupResults(result: CleanupResult): void {\n    logger.info('Cleanup operations:')\n\n    result.operations.forEach(op => {\n      const status = op.success ? '✓' : '✗'\n      const message = op.error ? `${op.message}: ${op.error}` : op.message\n\n      if (op.success) {\n        logger.info(`  ${status} ${message}`)\n      } else {\n        logger.error(`  ${status} ${message}`)\n      }\n    })\n\n    if (result.errors.length > 0) {\n      logger.warn(`${result.errors.length} error(s) occurred during cleanup`)\n    }\n  }\n\n  /**\n   * Execute cleanup for all worktrees associated with an issue or PR number\n   * Searches for worktrees by their path patterns (e.g., issue-25, pr-25, 25-feature, _pr_25)\n   * Implements bash cleanup-worktree.sh remove_worktrees_by_issue() (lines 157-242)\n   */\n  private async executeIssueCleanup(parsed: ParsedCleanupInput): Promise<void> {\n    const issueNumber = parsed.issueNumber\n    if (issueNumber === undefined) {\n      throw new Error('No issue/PR number provided for cleanup')\n    }\n\n    const { force, dryRun } = parsed.options\n\n    logger.info(`Finding worktrees related to GitHub issue/PR #${issueNumber}...`)\n\n    // Step 1: Get all worktrees and filter by path pattern\n    const worktrees = await this.gitWorktreeManager.listWorktrees()\n    const matchingWorktrees = worktrees.filter(wt => {\n      const path = wt.path.toLowerCase()\n      // Lowercase for case-insensitive matching (Linear IDs are uppercase like MARK-1)\n      const idStr = String(issueNumber).toLowerCase()\n\n      // Check if path contains the identifier with proper word boundaries\n      // Matches: issue-25, pr-25, 25-feature, _pr_25, issue-mark-1, etc.\n      // Uses word boundary or common separators (-, _, /) for alphanumeric IDs\n      const pattern = new RegExp(`(?:^|[/_-])${idStr}(?:[/_-]|$)`)\n      return pattern.test(path)\n    })\n\n    if (matchingWorktrees.length === 0) {\n      logger.warn(`No worktrees found for GitHub issue/PR #${issueNumber}`)\n      logger.info(`Searched for worktree paths containing: ${issueNumber}, _pr_${issueNumber}, issue-${issueNumber}, etc.`)\n      return\n    }\n\n    // Step 2: Build targets list from matching worktrees\n    const targets: Array<{ branchName: string; hasWorktree: boolean; worktreePath?: string }> =\n      matchingWorktrees.map(wt => ({\n        branchName: wt.branch,\n        hasWorktree: true,\n        worktreePath: wt.path\n      }))\n\n    // Step 3: Display preview\n    logger.info(`Found ${targets.length} worktree(s) related to issue/PR #${issueNumber}:`)\n    for (const target of targets) {\n      logger.info(`  🌿 ${target.branchName} (${target.worktreePath})`)\n    }\n\n    // Step 4: Batch confirmation (unless --force)\n    if (!force) {\n      const confirmCleanup = await promptConfirmation(\n        `Remove ${targets.length} worktree(s)?`,\n        true\n      )\n      if (!confirmCleanup) {\n        logger.info('Cleanup cancelled')\n        return\n      }\n    }\n\n    // Step 5: Process each target sequentially\n    let worktreesRemoved = 0\n    let branchesDeleted = 0\n    const databaseBranchesDeletedList: string[] = []\n    let failed = 0\n\n    for (const target of targets) {\n      logger.info(`Processing worktree: ${target.branchName}`)\n\n      // Cleanup worktree using ResourceCleanup with ParsedInput\n      try {\n        // Use the known issue number directly instead of parsing from branch name\n        // This ensures CLI symlinks (created with issue number) are properly cleaned up\n        const parsedInput: ParsedInput = {\n          type: 'issue',\n          number: issueNumber,  // Use the known issue number, not parsed from branch\n          branchName: target.branchName,\n          originalInput: String(issueNumber)\n        }\n\n        await this.ensureResourceCleanup()\n        if (!this.resourceCleanup) {\n          throw new Error('Failed to initialize ResourceCleanup')\n        }\n        const result = await this.resourceCleanup.cleanupWorktree(parsedInput, {\n          dryRun: dryRun ?? false,\n          force: force ?? false,\n          deleteBranch: false, // Handle branch deletion separately\n          keepDatabase: false\n        })\n\n        if (result.success) {\n          worktreesRemoved++\n          logger.success(`  Worktree removed: ${target.branchName}`)\n\n          // Check if database branch was actually deleted (use explicit deleted field)\n          const dbOperation = result.operations.find(op => op.type === 'database')\n          if (dbOperation?.deleted) {\n            // Get branch name from result or use the target branch name\n            const deletedBranchName = target.branchName\n            databaseBranchesDeletedList.push(deletedBranchName)\n          }\n        } else {\n          failed++\n          logger.error(`  Failed to remove worktree: ${target.branchName}`)\n        }\n      } catch (error) {\n        failed++\n        const errMsg = error instanceof Error ? error.message : 'Unknown error'\n        logger.error(`  Failed to remove worktree: ${errMsg}`)\n        continue // Continue with next worktree even if this one failed\n      }\n\n      // Step 6: Delete branch\n      try {\n        await this.ensureResourceCleanup()\n        if (!this.resourceCleanup) {\n          throw new Error('Failed to initialize ResourceCleanup')\n        }\n        await this.resourceCleanup.deleteBranch(target.branchName, {\n          force: force ?? false,\n          dryRun: dryRun ?? false\n        })\n        branchesDeleted++\n        logger.success(`  Branch deleted: ${target.branchName}`)\n      } catch (error) {\n        // Don't count unmerged branch as failure - it's a safety feature\n        const errMsg = error instanceof Error ? error.message : String(error)\n        if (errMsg.includes('not fully merged')) {\n          logger.warn(`  Branch not fully merged, skipping deletion`)\n          logger.warn(`  Use --force to delete anyway`)\n        } else {\n          // Other errors are real failures\n          logger.error(`  Failed to delete branch: ${errMsg}`)\n        }\n      }\n    }\n\n    // Step 7: Report statistics\n    logger.success(`Completed cleanup for issue/PR #${issueNumber}:`)\n    logger.info(`   📁 Worktrees removed: ${worktreesRemoved}`)\n    logger.info(`   🌿 Branches deleted: ${branchesDeleted}`)\n    if (databaseBranchesDeletedList.length > 0) {\n      // Display branch names in the format requested\n      logger.info(`   🗂️ Database branches deleted: ${databaseBranchesDeletedList.join(', ')}`)\n    }\n    if (failed > 0) {\n      logger.warn(`   ❌ Failed operations: ${failed}`)\n    }\n  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