@iloom/cli 0.3.0 → 0.3.2

package/dist/chunk-5EF7Z346.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/lib/LoomManager.ts","../src/lib/VSCodeIntegration.ts","../src/lib/EnvironmentManager.ts","../src/lib/CLIIsolationManager.ts","../src/lib/DatabaseManager.ts","../src/lib/ResourceCleanup.ts"],"sourcesContent":["import path from 'path'\nimport fs from 'fs-extra'\nimport { GitWorktreeManager } from './GitWorktreeManager.js'\nimport type { IssueTracker } from './IssueTracker.js'\nimport type { BranchNamingService } from './BranchNamingService.js'\nimport { EnvironmentManager } from './EnvironmentManager.js'\nimport { ClaudeContextManager } from './ClaudeContextManager.js'\nimport { ProjectCapabilityDetector } from './ProjectCapabilityDetector.js'\nimport { CLIIsolationManager } from './CLIIsolationManager.js'\nimport { VSCodeIntegration } from './VSCodeIntegration.js'\nimport { SettingsManager } from './SettingsManager.js'\nimport { branchExists, executeGitCommand, ensureRepositoryHasCommits, extractIssueNumber } from '../utils/git.js'\nimport { installDependencies } from '../utils/package-manager.js'\nimport { generateColorFromBranchName } from '../utils/color.js'\nimport { DatabaseManager } from './DatabaseManager.js'\nimport { loadEnvIntoProcess } from '../utils/env.js'\nimport type { Loom, CreateLoomInput } from '../types/loom.js'\nimport type { GitWorktree } from '../types/worktree.js'\nimport type { Issue, PullRequest } from '../types/index.js'\nimport { logger } from '../utils/logger.js'\n\n/**\n * LoomManager orchestrates the creation and management of looms (isolated workspaces)\n * Bridges the gap between input validation and workspace operations\n */\nexport class LoomManager {\n  constructor(\n    private gitWorktree: GitWorktreeManager,\n    private issueTracker: IssueTracker,\n    private branchNaming: BranchNamingService,\n    private environment: EnvironmentManager,\n    _claude: ClaudeContextManager, // Not stored - kept for DI compatibility, LoomLauncher creates its own\n    private capabilityDetector: ProjectCapabilityDetector,\n    private cliIsolation: CLIIsolationManager,\n    private settings: SettingsManager,\n    private database?: DatabaseManager\n  ) {}\n\n  /**\n   * Get database branch name for a loom by reading its .env file\n   * Returns null if database is not configured or branch cannot be determined\n   *\n   * @param loomPath - Path to the loom worktree\n   */\n  async getDatabaseBranchForLoom(loomPath: string): Promise<string | null> {\n    if (!this.database) {\n      return null\n    }\n\n    try {\n      const envFilePath = path.join(loomPath, '.env')\n      const settings = await this.settings.loadSettings()\n      const databaseUrlVarName = settings.capabilities?.database?.databaseUrlEnvVarName ?? 'DATABASE_URL'\n\n      // Get database connection string from loom's .env file\n      const connectionString = await this.environment.getEnvVariable(envFilePath, databaseUrlVarName)\n\n      if (!connectionString) {\n        return null\n      }\n\n      return await this.database.getBranchNameFromConnectionString(connectionString, loomPath)\n    } catch (error) {\n      logger.debug(`Could not get database branch for loom at ${loomPath}: ${error instanceof Error ? error.message : 'Unknown error'}`)\n      return null\n    }\n  }\n\n  /**\n   * Create a new loom (isolated workspace)\n   * Orchestrates worktree creation, environment setup, and Claude context generation\n   * NEW: Checks for existing worktrees and reuses them if found\n   */\n  async createIloom(input: CreateLoomInput): Promise<Loom> {\n    // 1. Fetch issue/PR data if needed\n    logger.info('Fetching issue data...')\n    const issueData = await this.fetchIssueData(input)\n\n    // NEW: Check for existing worktree BEFORE generating branch name (for efficiency)\n    if (input.type === 'issue' || input.type === 'pr' || input.type === 'branch') {\n      logger.info('Checking for existing worktree...')\n      const existing = await this.findExistingIloom(input, issueData)\n      if (existing) {\n        logger.success(`Found existing worktree, reusing: ${existing.path}`)\n        return await this.reuseIloom(existing, input, issueData)\n      }\n      logger.info('No existing worktree found, creating new one...')\n    }\n\n    // 2. Generate or validate branch name\n    logger.info('Preparing branch name...')\n    const branchName = await this.prepareBranchName(input, issueData)\n\n    // 3. Create git worktree (WITHOUT dependency installation)\n    logger.info('Creating git worktree...')\n    const worktreePath = await this.createWorktreeOnly(input, branchName)\n\n    // 4. Load main .env variables into process.env (like bash script lines 336-339)\n    this.loadMainEnvFile()\n\n    // 5. Detect project capabilities\n    const { capabilities, binEntries } = await this.capabilityDetector.detectCapabilities(worktreePath)\n\n    // 6. Copy environment files (.env) - ALWAYS done regardless of capabilities\n    await this.copyEnvironmentFiles(worktreePath)\n\n    // 7. Copy Loom settings (settings.local.json) - ALWAYS done regardless of capabilities\n    // Pass parent branch name if this is a child loom\n    await this.copyIloomSettings(worktreePath, input.parentLoom?.branchName)\n\n    // 8. Setup PORT environment variable - ONLY for web projects\n    // Load base port from settings\n    const settingsData = await this.settings.loadSettings()\n    const basePort = settingsData.capabilities?.web?.basePort ?? 3000\n\n    let port = basePort // default\n    if (capabilities.includes('web')) {\n      port = await this.setupPortForWeb(worktreePath, input, basePort)\n    }\n\n    // 9. Install dependencies AFTER environment setup (like bash script line 757-769)\n    try {\n      await installDependencies(worktreePath, true, true)\n    } catch (error) {\n      // Log warning but don't fail - matches bash script behavior\n      logger.warn(`Failed to install dependencies: ${error instanceof Error ? error.message : 'Unknown error'}`, error)\n    }\n\n    // 10. Setup database branch if configured\n    let databaseBranch: string | undefined = undefined\n    if (this.database && !input.options?.skipDatabase) {\n      try {\n        const connectionString = await this.database.createBranchIfConfigured(\n          branchName,\n          path.join(worktreePath, '.env'),\n          undefined, // cwd\n          input.parentLoom?.databaseBranch // fromBranch - use parent's database branch for child looms\n        )\n\n        if (connectionString) {\n          await this.environment.setEnvVar(\n            path.join(worktreePath, '.env'),\n            this.database.getConfiguredVariableName(),\n            connectionString\n          )\n          logger.success('Database branch configured')\n          databaseBranch = branchName\n        }\n      } catch (error) {\n        logger.error(\n          `Failed to setup database branch: ${error instanceof Error ? error.message : 'Unknown error'}`\n        )\n        throw error  // Database creation failures are fatal\n      }\n    }\n\n    // 10. Setup CLI isolation if project has CLI capability\n    let cliSymlinks: string[] | undefined = undefined\n    if (capabilities.includes('cli')) {\n      try {\n        cliSymlinks = await this.cliIsolation.setupCLIIsolation(\n          worktreePath,\n          input.identifier,\n          binEntries\n        )\n      } catch (error) {\n        // Log warning but don't fail - matches dependency installation behavior\n        logger.warn(\n          `Failed to setup CLI isolation: ${error instanceof Error ? error.message : 'Unknown error'}`,\n          error\n        )\n      }\n    }\n\n    // 11. Apply color synchronization (terminal and VSCode)\n    if (!input.options?.skipColorSync) {\n      try {\n        await this.applyColorSynchronization(worktreePath, branchName)\n      } catch (error) {\n        // Log warning but don't fail - colors are cosmetic\n        logger.warn(\n          `Failed to apply color synchronization: ${error instanceof Error ? error.message : 'Unknown error'}`,\n          error\n        )\n      }\n    }\n\n    // NEW: Move issue to In Progress (for new worktrees)\n    if (input.type === 'issue') {\n      try {\n        logger.info('Moving issue to In Progress...')\n        // Check if provider supports this optional method\n        if (this.issueTracker.moveIssueToInProgress) {\n          await this.issueTracker.moveIssueToInProgress(input.identifier as number)\n        }\n      } catch (error) {\n        // Warn but don't fail - matches bash script behavior\n        logger.warn(\n          `Failed to move issue to In Progress: ${error instanceof Error ? error.message : 'Unknown error'}`,\n          error\n        )\n      }\n    }\n\n    // 8. Launch workspace components based on individual flags\n    const enableClaude = input.options?.enableClaude !== false\n    const enableCode = input.options?.enableCode !== false\n    const enableDevServer = input.options?.enableDevServer !== false\n    const enableTerminal = input.options?.enableTerminal ?? false\n    const oneShot = input.options?.oneShot ?? 'default'\n    const setArguments = input.options?.setArguments\n    const executablePath = input.options?.executablePath\n\n    // Only launch if at least one component is enabled\n    if (enableClaude || enableCode || enableDevServer || enableTerminal) {\n      const { LoomLauncher } = await import('./LoomLauncher.js')\n      const { ClaudeContextManager } = await import('./ClaudeContextManager.js')\n\n      // Create ClaudeContextManager with shared SettingsManager to ensure CLI overrides work\n      const claudeContext = new ClaudeContextManager(undefined, undefined, this.settings)\n      const launcher = new LoomLauncher(claudeContext, this.settings)\n\n      await launcher.launchLoom({\n        enableClaude,\n        enableCode,\n        enableDevServer,\n        enableTerminal,\n        worktreePath,\n        branchName,\n        port,\n        capabilities,\n        workflowType: input.type === 'branch' ? 'regular' : input.type,\n        identifier: input.identifier,\n        ...(issueData?.title && { title: issueData.title }),\n        oneShot,\n        ...(setArguments && { setArguments }),\n        ...(executablePath && { executablePath }),\n        sourceEnvOnStart: settingsData.sourceEnvOnStart ?? false,\n      })\n    }\n\n    // 9. Create and return loom metadata\n    const loom: Loom = {\n      id: this.generateLoomId(input),\n      path: worktreePath,\n      branch: branchName,\n      type: input.type,\n      identifier: input.identifier,\n      port,\n      createdAt: new Date(),\n      lastAccessed: new Date(),\n      ...(databaseBranch !== undefined && { databaseBranch }),\n      ...(capabilities.length > 0 && { capabilities }),\n      ...(Object.keys(binEntries).length > 0 && { binEntries }),\n      ...(cliSymlinks && cliSymlinks.length > 0 && { cliSymlinks }),\n      ...(issueData !== null && {\n        issueData: {\n          title: issueData.title,\n          body: issueData.body,\n          url: issueData.url,\n          state: issueData.state,\n        },\n      }),\n    }\n\n    logger.success(`Created loom: ${loom.id} at ${loom.path}`)\n    return loom\n  }\n\n  /**\n   * Finish a loom (merge work and cleanup)\n   * Not yet implemented - see Issue #7\n   */\n  async finishIloom(_identifier: string): Promise<void> {\n    throw new Error('Not implemented - see Issue #7')\n  }\n\n\n  /**\n   * List all active looms\n   */\n  async listLooms(): Promise<Loom[]> {\n    const worktrees = await this.gitWorktree.listWorktrees()\n    return await this.mapWorktreesToLooms(worktrees)\n  }\n\n  /**\n   * Find a specific loom by identifier\n   */\n  async findIloom(identifier: string): Promise<Loom | null> {\n    const looms = await this.listLooms()\n    return (\n      looms.find(\n        h =>\n          h.id === identifier ||\n          h.identifier.toString() === identifier ||\n          h.branch === identifier\n      ) ?? null\n    )\n  }\n\n  /**\n   * Find child looms for a given parent loom\n   * Child looms are worktrees created with the parent loom as their base\n   *\n   * @param parentBranchName - The parent loom's branch name\n   * @returns Array of child loom worktrees\n   */\n  async findChildLooms(parentBranchName: string): Promise<GitWorktree[]> {\n    try {\n      const worktrees = await this.gitWorktree.listWorktrees()\n      if (!worktrees) {\n        return []\n      }\n\n      // Sanitize parent branch name the same way as in createWorktreeOnly (lines 361-363)\n      const sanitizedBranchName = parentBranchName\n        .replace(/\\//g, '-')\n        .replace(/[^a-zA-Z0-9-_]/g, '-')\n\n      // Child looms are in directory: {sanitizedBranchName}-looms/\n      const pattern = `${sanitizedBranchName}-looms/`\n\n      return worktrees.filter(wt => wt.path.includes(pattern))\n    } catch (error) {\n      logger.debug(`Failed to find child looms: ${error instanceof Error ? error.message : 'Unknown error'}`)\n      return []\n    }\n  }\n\n  /**\n   * Check for child looms and warn user if any exist\n   * This is useful before finishing or cleaning up a parent loom\n   *\n   * @param branchName - Optional branch name to check. If not provided, uses current branch.\n   * @returns true if child looms were found, false otherwise\n   */\n  async checkAndWarnChildLooms(branchName?: string): Promise<boolean> {\n    // Use provided branch name or get current branch\n    let targetBranch: string | null | undefined = branchName\n    if (!targetBranch) {\n      const { getCurrentBranch } = await import('../utils/git.js')\n      targetBranch = await getCurrentBranch()\n    }\n\n    // Skip if not on a branch\n    if (!targetBranch) {\n      return false\n    }\n\n    const childLooms = await this.findChildLooms(targetBranch)\n    if (childLooms.length > 0) {\n      logger.warn(`Found ${childLooms.length} child loom(s) that should be finished first:`)\n      for (const child of childLooms) {\n        logger.warn(`  - ${child.path}`)\n      }\n      logger.warn('')\n      logger.warn('To finish child looms:')\n      for (const child of childLooms) {\n        // Extract identifier from child branch for finish command\n        // Check PR first since PR branches often contain issue numbers too\n        const prMatch = child.branch.match(/_pr_(\\d+)/)\n        const issueId = extractIssueNumber(child.branch)\n\n        const childIdentifier = prMatch\n          ? prMatch[1]  // PR: use number\n          : issueId ?? child.branch  // Issue: use extracted ID (alphanumeric or numeric), or branch name\n\n        logger.warn(`  il finish ${childIdentifier}`)\n      }\n      logger.warn('')\n      return true\n    }\n\n    return false\n  }\n\n  /**\n   * Fetch issue/PR data based on input type\n   */\n  private async fetchIssueData(\n    input: CreateLoomInput\n  ): Promise<Issue | PullRequest | null> {\n    if (input.type === 'issue') {\n      return await this.issueTracker.fetchIssue(input.identifier as number)\n    } else if (input.type === 'pr') {\n      // Check if provider supports PRs before calling\n      if (!this.issueTracker.supportsPullRequests || !this.issueTracker.fetchPR) {\n        throw new Error('Issue tracker does not support pull requests')\n      }\n      return await this.issueTracker.fetchPR(input.identifier as number)\n    }\n    return null\n  }\n\n  /**\n   * Prepare branch name based on input type and issue/PR data\n   */\n  private async prepareBranchName(\n    input: CreateLoomInput,\n    issueData: Issue | PullRequest | null\n  ): Promise<string> {\n    if (input.type === 'branch') {\n      return input.identifier as string\n    }\n\n    if (input.type === 'pr' && issueData && 'branch' in issueData) {\n      return issueData.branch\n    }\n\n    if (input.type === 'issue' && issueData) {\n      // Use BranchNamingService for AI-powered branch name generation\n      const branchName = await this.branchNaming.generateBranchName({\n        issueNumber: input.identifier as number,\n        title: issueData.title,\n      })\n      return branchName\n    }\n\n    // Fallback for edge cases\n    if (input.type === 'pr') {\n      return `pr-${input.identifier}`\n    }\n\n    throw new Error(`Unable to determine branch name for input type: ${input.type}`)\n  }\n\n  /**\n   * Create worktree for the loom (without dependency installation)\n   */\n  private async createWorktreeOnly(\n    input: CreateLoomInput,\n    branchName: string\n  ): Promise<string> {\n    // Ensure repository has at least one commit (needed for worktree creation)\n    // This handles the case where the repo is completely empty (post git init, pre-first commit)\n    logger.info('Ensuring repository has initial commit...')\n    await ensureRepositoryHasCommits(this.gitWorktree.workingDirectory)\n\n    // Load worktree prefix from settings\n    const settingsData = await this.settings.loadSettings()\n    let worktreePrefix = settingsData.worktreePrefix\n\n    // If this is a child loom, compute dynamic prefix based on parent\n    if (input.parentLoom) {\n      // Sanitize branch name for directory use\n      const sanitizedBranchName = input.parentLoom.branchName\n        .replace(/\\//g, '-')\n        .replace(/[^a-zA-Z0-9-_]/g, '-')\n      worktreePrefix = `${sanitizedBranchName}-looms/`\n      logger.info(`Creating child loom with prefix: ${worktreePrefix}`)\n    }\n\n    // Build options object, only including prefix if it's defined\n    const pathOptions: { isPR?: boolean; prNumber?: number; prefix?: string } =\n      input.type === 'pr'\n        ? { isPR: true, prNumber: input.identifier as number }\n        : {}\n\n    if (worktreePrefix !== undefined) {\n      pathOptions.prefix = worktreePrefix\n    }\n\n    const worktreePath = this.gitWorktree.generateWorktreePath(\n      branchName,\n      undefined,\n      pathOptions\n    )\n\n    // Fetch all remote branches to ensure we have latest refs (especially for PRs)\n    // Ports: bash script lines 667-674\n    if (input.type === 'pr') {\n      logger.info('Fetching all remote branches...')\n      try {\n        await executeGitCommand(['fetch', 'origin'], { cwd: this.gitWorktree.workingDirectory })\n        logger.success('Successfully fetched from remote')\n      } catch (error) {\n        throw new Error(\n          `Failed to fetch from remote: ${error instanceof Error ? error.message : 'Unknown error'}. ` +\n          `Make sure you have access to the repository.`\n        )\n      }\n    }\n\n    // Check if branch exists locally (used for different purposes depending on type)\n    const branchExistedLocally = await branchExists(branchName)\n\n    // For non-PRs, throw error if branch exists\n    // For PRs, we'll use this to determine if we need to reset later\n    if (input.type !== 'pr' && branchExistedLocally) {\n      throw new Error(\n        `Cannot create worktree: branch '${branchName}' already exists. ` +\n        `Use 'git branch -D ${branchName}' to delete it first if needed.`\n      )\n    }\n\n    // Determine base branch: use parent's branch for child looms, otherwise use explicit baseBranch or default (main)\n    const baseBranch = input.parentLoom?.branchName ?? input.baseBranch\n\n    await this.gitWorktree.createWorktree({\n      path: worktreePath,\n      branch: branchName,\n      createBranch: input.type !== 'pr', // PRs use existing branches\n      ...(baseBranch && { baseBranch }),\n    })\n\n    // Reset PR branch to match remote exactly (if we created a new local branch)\n    // Ports: bash script lines 689-713\n    if (input.type === 'pr' && !branchExistedLocally) {\n      logger.info('Resetting new PR branch to match remote exactly...')\n      try {\n        await executeGitCommand(['reset', '--hard', `origin/${branchName}`], { cwd: worktreePath })\n        await executeGitCommand(['branch', '--set-upstream-to', `origin/${branchName}`], { cwd: worktreePath })\n        logger.success('Successfully reset to match remote')\n      } catch (error) {\n        logger.warn(`Failed to reset to match remote: ${error instanceof Error ? error.message : 'Unknown error'}`)\n      }\n    }\n\n    return worktreePath\n  }\n\n  /**\n   * Copy user application environment files (.env) from main repo to worktree\n   * Always called regardless of project capabilities\n   */\n  private async copyEnvironmentFiles(worktreePath: string): Promise<void> {\n    const envFilePath = path.join(worktreePath, '.env')\n\n    try {\n      const mainEnvPath = path.join(process.cwd(), '.env')\n      if (await fs.pathExists(envFilePath)) {\n        logger.warn('.env file already exists in worktree, skipping copy')\n      } else {\n        //TODO: Update this to handle .env.local, .env.development and .env.development.local as well.\n        await this.environment.copyIfExists(mainEnvPath, envFilePath)\n      }\n    } catch (error) {\n      // Handle gracefully if main .env fails to copy\n      logger.warn(`Warning: Failed to copy main .env file: ${error instanceof Error ? error.message : 'Unknown error'}`)\n    }\n  }\n\n  /**\n   * Copy iloom configuration (settings.local.json) from main repo to worktree\n   * Always called regardless of project capabilities\n   * @param worktreePath Path to the worktree\n   * @param parentBranchName Optional parent branch name for child looms (sets mainBranch)\n   */\n  private async copyIloomSettings(worktreePath: string, parentBranchName?: string): Promise<void> {\n    const mainSettingsLocalPath = path.join(process.cwd(), '.iloom', 'settings.local.json')\n\n    try {\n      const worktreeIloomDir = path.join(worktreePath, '.iloom')\n\n      // Ensure .iloom directory exists in worktree\n      await fs.ensureDir(worktreeIloomDir)\n\n      const worktreeSettingsLocalPath = path.join(worktreeIloomDir, 'settings.local.json')\n\n      // Check if settings.local.json already exists in worktree\n      if (await fs.pathExists(worktreeSettingsLocalPath)) {\n        logger.warn('settings.local.json already exists in worktree, skipping copy')\n      } else {\n        await this.environment.copyIfExists(mainSettingsLocalPath, worktreeSettingsLocalPath)\n      }\n\n      // If this is a child loom, update mainBranch setting\n      if (parentBranchName) {\n        let existingSettings = {}\n\n        try {\n          const content = await fs.readFile(worktreeSettingsLocalPath, 'utf8')\n          existingSettings = JSON.parse(content)\n        } catch {\n          // File doesn't exist or invalid, start fresh\n        }\n\n        const updatedSettings = {\n          ...existingSettings,\n          mainBranch: parentBranchName,\n        }\n\n        await fs.writeFile(worktreeSettingsLocalPath, JSON.stringify(updatedSettings, null, 2))\n        logger.info(`Set mainBranch to ${parentBranchName} for child loom`)\n      }\n    } catch (error) {\n      logger.warn(`Warning: Failed to copy settings.local.json: ${error instanceof Error ? error.message : 'Unknown error'}`)\n    }\n  }\n\n  /**\n   * Setup PORT environment variable for web projects\n   * Only called when project has web capabilities\n   */\n  private async setupPortForWeb(\n    worktreePath: string,\n    input: CreateLoomInput,\n    basePort: number\n  ): Promise<number> {\n    const envFilePath = path.join(worktreePath, '.env')\n\n    // Calculate port based on input type\n    const options: { basePort: number; issueNumber?: number; prNumber?: number; branchName?: string } = { basePort }\n\n    if (input.type === 'issue') {\n      options.issueNumber = input.identifier as number\n    } else if (input.type === 'pr') {\n      options.prNumber = input.identifier as number\n    } else if (input.type === 'branch') {\n      options.branchName = input.identifier as string\n    }\n\n    const port = this.environment.calculatePort(options)\n\n    await this.environment.setEnvVar(envFilePath, 'PORT', String(port))\n    return port\n  }\n\n  /**\n   * Load environment variables from main .env file into process.env\n   * Uses dotenv-flow to handle various .env file patterns\n   */\n  private loadMainEnvFile(): void {\n    const result = loadEnvIntoProcess({ path: process.cwd() })\n\n    if (result.error) {\n      // Handle gracefully if .env files don't exist\n      logger.warn(`Warning: Could not load .env files: ${result.error.message}`)\n    } else {\n      logger.info('Loaded environment variables using dotenv-flow')\n      if (result.parsed && Object.keys(result.parsed).length > 0) {\n        logger.debug(`Loaded ${Object.keys(result.parsed).length} environment variables`)\n      }\n    }\n  }\n\n  /**\n   * Generate a unique loom ID\n   */\n  private generateLoomId(input: CreateLoomInput): string {\n    const prefix = input.type\n    return `${prefix}-${input.identifier}`\n  }\n\n  /**\n   * Calculate port for the loom\n   * Base port: configurable via settings.capabilities.web.basePort (default 3000) + issue/PR number (or deterministic hash for branches)\n   */\n  private async calculatePort(input: CreateLoomInput): Promise<number> {\n    // Load base port from settings\n    const settingsData = await this.settings.loadSettings()\n    const basePort = settingsData.capabilities?.web?.basePort ?? 3000\n\n    if (input.type === 'issue' && typeof input.identifier === 'number') {\n      return this.environment.calculatePort({ basePort, issueNumber: input.identifier })\n    }\n\n    if (input.type === 'pr' && typeof input.identifier === 'number') {\n      return this.environment.calculatePort({ basePort, prNumber: input.identifier })\n    }\n\n    if (input.type === 'branch' && typeof input.identifier === 'string') {\n      // Use deterministic hash for branch-based ports\n      return this.environment.calculatePort({ basePort, branchName: input.identifier })\n    }\n\n    // Fallback: basePort only (shouldn't reach here with valid input)\n    throw new Error(`Unknown input type: ${input.type}`)\n  }\n\n\n  /**\n   * Apply color synchronization to both VSCode and terminal\n   * Colors are cosmetic - errors are logged but don't block workflow\n   */\n  private async applyColorSynchronization(\n    worktreePath: string,\n    branchName: string\n  ): Promise<void> {\n    const colorData = generateColorFromBranchName(branchName)\n\n    // Apply VSCode title bar color\n    const vscode = new VSCodeIntegration()\n    await vscode.setTitleBarColor(worktreePath, colorData.hex)\n\n    logger.info(`Applied VSCode title bar color: ${colorData.hex} for branch: ${branchName}`)\n\n    // Note: Terminal color is applied during window creation in ClaudeContextManager\n    // This ensures the color is set when the new terminal window is opened\n  }\n\n  /**\n   * Map worktrees to loom objects\n   * This is a simplified conversion - in production we'd store loom metadata\n   */\n  private async mapWorktreesToLooms(worktrees: GitWorktree[]): Promise<Loom[]> {\n    return await Promise.all(worktrees.map(async (wt) => {\n      // Extract identifier from branch name\n      let type: 'issue' | 'pr' | 'branch' = 'branch'\n      let identifier: string | number = wt.branch\n\n      if (wt.branch.startsWith('issue-')) {\n        type = 'issue'\n        identifier = parseInt(wt.branch.replace('issue-', ''), 10)\n      } else if (wt.branch.startsWith('pr-')) {\n        type = 'pr'\n        identifier = parseInt(wt.branch.replace('pr-', ''), 10)\n      }\n\n      return {\n        id: `${type}-${identifier}`,\n        path: wt.path,\n        branch: wt.branch,\n        type,\n        identifier,\n        port: await this.calculatePort({ type, identifier, originalInput: '' }),\n        createdAt: new Date(),\n        lastAccessed: new Date(),\n      }\n    }))\n  }\n\n  /**\n   * NEW: Find existing loom for the given input\n   * Checks for worktrees matching the issue/PR identifier\n   */\n  private async findExistingIloom(\n    input: CreateLoomInput,\n    issueData: Issue | PullRequest | null\n  ): Promise<GitWorktree | null> {\n    if (input.type === 'issue') {\n      return await this.gitWorktree.findWorktreeForIssue(input.identifier as number)\n    } else if (input.type === 'pr' && issueData && 'branch' in issueData) {\n      return await this.gitWorktree.findWorktreeForPR(\n        input.identifier as number,\n        issueData.branch\n      )\n    } else if (input.type === 'branch') {\n      return await this.gitWorktree.findWorktreeForBranch(input.identifier as string)\n    }\n    return null\n  }\n\n  /**\n   * NEW: Reuse an existing loom\n   * Includes environment setup and database branching for existing worktrees\n   * Ports: handle_existing_worktree() from bash script lines 168-215\n   */\n  private async reuseIloom(\n    worktree: GitWorktree,\n    input: CreateLoomInput,\n    issueData: Issue | PullRequest | null\n  ): Promise<Loom> {\n    const worktreePath = worktree.path\n    const branchName = worktree.branch\n\n    // 1. Load main .env variables into process.env\n    this.loadMainEnvFile()\n\n    // 2. Detect capabilities (quick, no installation)\n    const { capabilities, binEntries } = await this.capabilityDetector.detectCapabilities(worktreePath)\n\n    // 3. Defensively copy .env and settings.local.json if missing\n    await this.copyEnvironmentFiles(worktreePath)\n    await this.copyIloomSettings(worktreePath)\n\n    // 4. Setup PORT for web projects (ensure it's set even if .env existed)\n    // Load base port from settings\n    const settingsData = await this.settings.loadSettings()\n    const basePort = settingsData.capabilities?.web?.basePort ?? 3000\n\n    let port = basePort\n    if (capabilities.includes('web')) {\n      port = await this.setupPortForWeb(worktreePath, input, basePort)\n    }\n\n    // 5. Skip database branch creation for existing worktrees\n    // The database branch should have been created when the worktree was first created\n    // Matches bash script behavior: handle_existing_worktree() skips all setup\n    logger.info('Database branch assumed to be already configured for existing worktree')\n    const databaseBranch: string | undefined = undefined\n\n    // 6. Move issue to In Progress (for reused worktrees too)\n    if (input.type === 'issue') {\n      try {\n        logger.info('Moving issue to In Progress...')\n        // Check if provider supports this optional method\n        if (this.issueTracker.moveIssueToInProgress) {\n          await this.issueTracker.moveIssueToInProgress(input.identifier as number)\n        }\n      } catch (error) {\n        logger.warn(\n          `Failed to move issue to In Progress: ${error instanceof Error ? error.message : 'Unknown error'}`,\n          error\n        )\n      }\n    }\n\n    // 7. Launch components (same as new worktree)\n    const enableClaude = input.options?.enableClaude !== false\n    const enableCode = input.options?.enableCode !== false\n    const enableDevServer = input.options?.enableDevServer !== false\n    const enableTerminal = input.options?.enableTerminal ?? false\n    const oneShot = input.options?.oneShot ?? 'default'\n    const setArguments = input.options?.setArguments\n    const executablePath = input.options?.executablePath\n\n    if (enableClaude || enableCode || enableDevServer || enableTerminal) {\n      logger.info('Launching workspace components...')\n      const { LoomLauncher } = await import('./LoomLauncher.js')\n      const { ClaudeContextManager } = await import('./ClaudeContextManager.js')\n\n      // Create ClaudeContextManager with shared SettingsManager to ensure CLI overrides work\n      const claudeContext = new ClaudeContextManager(undefined, undefined, this.settings)\n      const launcher = new LoomLauncher(claudeContext, this.settings)\n\n      await launcher.launchLoom({\n        enableClaude,\n        enableCode,\n        enableDevServer,\n        enableTerminal,\n        worktreePath,\n        branchName,\n        port,\n        capabilities,\n        workflowType: input.type === 'branch' ? 'regular' : input.type,\n        identifier: input.identifier,\n        ...(issueData?.title && { title: issueData.title }),\n        oneShot,\n        ...(setArguments && { setArguments }),\n        ...(executablePath && { executablePath }),\n        sourceEnvOnStart: settingsData.sourceEnvOnStart ?? false,\n      })\n    }\n\n    // 8. Return loom metadata\n    const loom: Loom = {\n      id: this.generateLoomId(input),\n      path: worktreePath,\n      branch: branchName,\n      type: input.type,\n      identifier: input.identifier,\n      port,\n      createdAt: new Date(), // We don't have actual creation date, use now\n      lastAccessed: new Date(),\n      ...(databaseBranch !== undefined && { databaseBranch }),\n      ...(capabilities.length > 0 && { capabilities }),\n      ...(Object.keys(binEntries).length > 0 && { binEntries }),\n      ...(issueData !== null && {\n        issueData: {\n          title: issueData.title,\n          body: issueData.body,\n          url: issueData.url,\n          state: issueData.state,\n        },\n      }),\n    }\n\n    logger.success(`Reused existing loom: ${loom.id} at ${loom.path}`)\n    return loom\n  }\n}\n","import fs from 'fs-extra'\nimport path from 'path'\nimport { parse, modify, applyEdits } from 'jsonc-parser'\nimport { logger } from '../utils/logger.js'\nimport {\n\thexToRgb,\n\trgbToHex,\n\tlightenColor,\n\tcalculateForegroundColor,\n} from '../utils/color.js'\n\n/**\n * VSCode settings structure\n */\ninterface VSCodeSettings {\n\t'workbench.colorCustomizations'?: {\n\t\t// Title Bar\n\t\t'titleBar.activeBackground'?: string\n\t\t'titleBar.inactiveBackground'?: string\n\t\t'titleBar.activeForeground'?: string\n\t\t'titleBar.inactiveForeground'?: string\n\t\t// Status Bar\n\t\t'statusBar.background'?: string\n\t\t'statusBar.foreground'?: string\n\t\t'statusBarItem.hoverBackground'?: string\n\t\t'statusBarItem.remoteBackground'?: string\n\t\t'statusBarItem.remoteForeground'?: string\n\t\t// UI Accents\n\t\t'sash.hoverBorder'?: string\n\t\t'commandCenter.border'?: string\n\t\t[key: string]: string | undefined\n\t}\n\t[key: string]: unknown\n}\n\n/**\n * Manages VSCode settings.json manipulation for workspace color synchronization\n */\nexport class VSCodeIntegration {\n\t/**\n\t * Set VSCode title bar color for a workspace\n\t *\n\t * @param workspacePath - Path to workspace directory\n\t * @param hexColor - Hex color string (e.g., \"#dcebf8\")\n\t */\n\tasync setTitleBarColor(workspacePath: string, hexColor: string): Promise<void> {\n\t\tconst vscodeDir = path.join(workspacePath, '.vscode')\n\t\tconst settingsPath = path.join(vscodeDir, 'settings.json')\n\n\t\ttry {\n\t\t\t// Ensure .vscode directory exists\n\t\t\tawait fs.ensureDir(vscodeDir)\n\n\t\t\t// Read existing settings (or create empty object)\n\t\t\tconst settings = await this.readSettings(settingsPath)\n\n\t\t\t// Merge color settings\n\t\t\tconst updatedSettings = this.mergeColorSettings(settings, hexColor)\n\n\t\t\t// Write settings atomically\n\t\t\tawait this.writeSettings(settingsPath, updatedSettings)\n\n\t\t\tlogger.debug(`Set VSCode title bar color to ${hexColor} for ${workspacePath}`)\n\t\t} catch (error) {\n\t\t\tthrow new Error(\n\t\t\t\t`Failed to set VSCode title bar color: ${error instanceof Error ? error.message : 'Unknown error'}`\n\t\t\t)\n\t\t}\n\t}\n\n\t/**\n\t * Read VSCode settings from file\n\t * Supports JSONC (JSON with Comments)\n\t *\n\t * @param settingsPath - Path to settings.json file\n\t * @returns Parsed settings object\n\t */\n\tprivate async readSettings(settingsPath: string): Promise<VSCodeSettings> {\n\t\ttry {\n\t\t\t// Check if file exists\n\t\t\tif (!(await fs.pathExists(settingsPath))) {\n\t\t\t\treturn {}\n\t\t\t}\n\n\t\t\t// Read file content\n\t\t\tconst content = await fs.readFile(settingsPath, 'utf8')\n\n\t\t\t// Parse JSONC (handles comments)\n\t\t\tconst errors: import('jsonc-parser').ParseError[] = []\n\t\t\tconst settings = parse(content, errors, { allowTrailingComma: true })\n\n\t\t\t// Check for parse errors\n\t\t\tif (errors.length > 0) {\n\t\t\t\tconst firstError = errors[0]\n\t\t\t\tthrow new Error(`Invalid JSON: ${firstError ? firstError.error : 'Unknown parse error'}`)\n\t\t\t}\n\n\t\t\treturn settings ?? {}\n\t\t} catch (error) {\n\t\t\tthrow new Error(\n\t\t\t\t`Failed to parse settings.json: ${error instanceof Error ? error.message : 'Unknown error'}`\n\t\t\t)\n\t\t}\n\t}\n\n\t/**\n\t * Write VSCode settings to file atomically\n\t * Preserves comments if present (using JSONC parser)\n\t *\n\t * @param settingsPath - Path to settings.json file\n\t * @param settings - Settings object to write\n\t */\n\tprivate async writeSettings(\n\t\tsettingsPath: string,\n\t\tsettings: VSCodeSettings\n\t): Promise<void> {\n\t\ttry {\n\t\t\tlet content: string\n\n\t\t\t// Check if file exists with comments\n\t\t\tif (await fs.pathExists(settingsPath)) {\n\t\t\t\tconst existingContent = await fs.readFile(settingsPath, 'utf8')\n\n\t\t\t\t// Try to preserve comments by using jsonc-parser's modify function\n\t\t\t\tif (existingContent.includes('//') || existingContent.includes('/*')) {\n\t\t\t\t\t// File has comments - use JSONC modify to preserve them\n\t\t\t\t\tcontent = await this.modifyWithCommentsPreserved(existingContent, settings)\n\t\t\t\t} else {\n\t\t\t\t\t// No comments - use standard JSON.stringify\n\t\t\t\t\tcontent = JSON.stringify(settings, null, 2) + '\\n'\n\t\t\t\t}\n\t\t\t} else {\n\t\t\t\t// New file - use standard JSON.stringify\n\t\t\t\tcontent = JSON.stringify(settings, null, 2) + '\\n'\n\t\t\t}\n\n\t\t\t// Write atomically using temp file + rename\n\t\t\tconst tempPath = `${settingsPath}.tmp`\n\t\t\tawait fs.writeFile(tempPath, content, 'utf8')\n\t\t\tawait fs.rename(tempPath, settingsPath)\n\t\t} catch (error) {\n\t\t\tthrow new Error(\n\t\t\t\t`Failed to write settings.json: ${error instanceof Error ? error.message : 'Unknown error'}`\n\t\t\t)\n\t\t}\n\t}\n\n\t/**\n\t * Modify JSONC content while preserving comments\n\t *\n\t * @param existingContent - Original JSONC content\n\t * @param newSettings - New settings to apply\n\t * @returns Modified JSONC content with comments preserved\n\t */\n\tprivate async modifyWithCommentsPreserved(\n\t\texistingContent: string,\n\t\tnewSettings: VSCodeSettings\n\t): Promise<string> {\n\t\tlet modifiedContent = existingContent\n\n\t\t// Apply each setting modification\n\t\tfor (const [key, value] of Object.entries(newSettings)) {\n\t\t\tconst edits = modify(modifiedContent, [key], value, {})\n\t\t\tmodifiedContent = applyEdits(modifiedContent, edits)\n\t\t}\n\n\t\treturn modifiedContent\n\t}\n\n\t/**\n\t * Merge color settings into existing settings object\n\t *\n\t * @param existing - Existing settings object\n\t * @param hexColor - Hex color to apply (subtle palette color)\n\t * @returns Updated settings object with color merged\n\t */\n\tprivate mergeColorSettings(existing: VSCodeSettings, hexColor: string): VSCodeSettings {\n\t\t// Clone existing settings\n\t\tconst updated: VSCodeSettings = { ...existing }\n\n\t\t// Initialize workbench.colorCustomizations if needed\n\t\tupdated['workbench.colorCustomizations'] ??= {}\n\n\t\tconst colors = updated['workbench.colorCustomizations']\n\n\t\t// Convert hex to RGB for manipulation\n\t\tconst baseRgb = hexToRgb(hexColor)\n\n\t\t// Calculate foreground color based on background luminance\n\t\tconst foreground = calculateForegroundColor(baseRgb)\n\t\tconst foregroundTransparent = foreground.replace('#', '#') + '99' // Add 60% opacity\n\n\t\t// Create lighter variant for hover states\n\t\tconst lighterRgb = lightenColor(baseRgb, 0.05) // 5% lighter\n\t\tconst lighterHex = rgbToHex(lighterRgb.r, lighterRgb.g, lighterRgb.b)\n\n\t\t// Title Bar - subtle top indicator\n\t\tcolors['titleBar.activeBackground'] = hexColor\n\t\tcolors['titleBar.inactiveBackground'] = hexColor + '99' // Semi-transparent when unfocused\n\t\tcolors['titleBar.activeForeground'] = foreground\n\t\tcolors['titleBar.inactiveForeground'] = foregroundTransparent\n\n\t\t// Status Bar - constant visibility at bottom\n\t\tcolors['statusBar.background'] = hexColor\n\t\tcolors['statusBar.foreground'] = foreground\n\t\tcolors['statusBarItem.hoverBackground'] = lighterHex\n\t\tcolors['statusBarItem.remoteBackground'] = hexColor // When connected to remote\n\t\tcolors['statusBarItem.remoteForeground'] = foreground\n\n\t\t// UI Accents - subtle hints\n\t\tcolors['sash.hoverBorder'] = hexColor // Resize borders\n\t\tcolors['commandCenter.border'] = foregroundTransparent // Search box border\n\n\t\treturn updated\n\t}\n}\n","import fs from 'fs-extra'\nimport { createLogger } from '../utils/logger.js'\nimport type {\n  PortAssignmentOptions,\n} from '../types/environment.js'\nimport {\n  parseEnvFile,\n  formatEnvLine,\n  validateEnvVariable,\n} from '../utils/env.js'\nimport { calculatePortForBranch } from '../utils/port.js'\n\nconst logger = createLogger({ prefix: '📝' })\n\nexport class EnvironmentManager {\n  private readonly backupSuffix: string = '.backup'\n\n  /**\n   * Set or update an environment variable in a .env file\n   * Ports functionality from bash/utils/env-utils.sh:setEnvVar()\n   * @returns The backup path if a backup was created\n   */\n  async setEnvVar(\n    filePath: string,\n    key: string,\n    value: string,\n    backup: boolean = false\n  ): Promise<string | void> {\n    // Validate variable name\n    const validation = validateEnvVariable(key, value)\n    if (!validation.valid) {\n      throw new Error(validation.error ?? 'Invalid variable name')\n    }\n\n    const fileExists = await fs.pathExists(filePath)\n\n    if (!fileExists) {\n      // File doesn't exist, create it\n      logger.info(`Creating ${filePath} with ${key}...`)\n      const content = formatEnvLine(key, value)\n      await fs.writeFile(filePath, content, 'utf8')\n      logger.success(`${filePath} created with ${key}`)\n      return\n    }\n\n    // File exists, read and parse it\n    const existingContent = await fs.readFile(filePath, 'utf8')\n    const envMap = parseEnvFile(existingContent)\n\n    // Create backup if requested\n    let backupPath: string | undefined\n    if (backup) {\n      backupPath = await this.createBackup(filePath)\n    }\n\n    // Update or add the variable\n    envMap.set(key, value)\n\n    // Rebuild the file content, preserving comments and empty lines\n    const lines = existingContent.split('\\n')\n    const newLines: string[] = []\n    let variableUpdated = false\n\n    for (const line of lines) {\n      const trimmedLine = line.trim()\n\n      // Preserve comments and empty lines\n      if (!trimmedLine || trimmedLine.startsWith('#')) {\n        newLines.push(line)\n        continue\n      }\n\n      // Remove 'export ' prefix if present\n      const cleanLine = trimmedLine.startsWith('export ')\n        ? trimmedLine.substring(7)\n        : trimmedLine\n\n      // Check if this line contains our variable\n      const equalsIndex = cleanLine.indexOf('=')\n      if (equalsIndex !== -1) {\n        const lineKey = cleanLine.substring(0, equalsIndex).trim()\n        if (lineKey === key) {\n          // Replace this line with the new value\n          newLines.push(formatEnvLine(key, value))\n          variableUpdated = true\n          continue\n        }\n      }\n\n      // Keep other lines as-is\n      newLines.push(line)\n    }\n\n    // If variable wasn't in the file, add it at the end\n    if (!variableUpdated) {\n      logger.info(`Adding ${key} to ${filePath}...`)\n      newLines.push(formatEnvLine(key, value))\n      logger.success(`${key} added successfully`)\n    } else {\n      logger.info(`Updating ${key} in ${filePath}...`)\n      logger.success(`${key} updated successfully`)\n    }\n\n    // Write the updated content\n    const newContent = newLines.join('\\n')\n    await fs.writeFile(filePath, newContent, 'utf8')\n\n    return backupPath\n  }\n\n  /**\n   * Read and parse a .env file\n   */\n  async readEnvFile(filePath: string): Promise<Map<string, string>> {\n    try {\n      const content = await fs.readFile(filePath, 'utf8')\n      return parseEnvFile(content)\n    } catch (error) {\n      // If file doesn't exist or can't be read, return empty map\n      logger.debug(\n        `Could not read env file ${filePath}: ${error instanceof Error ? error.message : String(error)}`\n      )\n      return new Map()\n    }\n  }\n\n  /**\n   * Get a specific environment variable from a .env file\n   * Returns null if file doesn't exist or variable is not found\n   */\n  async getEnvVariable(filePath: string, variableName: string): Promise<string | null> {\n    const envVars = await this.readEnvFile(filePath)\n    return envVars.get(variableName) ?? null\n  }\n\n  /**\n   * Generic file copy helper that only copies if source exists\n   * Does not throw if source file doesn't exist - just logs and returns\n   * @private\n   */\n   async copyIfExists(\n    source: string,\n    destination: string\n  ): Promise<void> {\n    const sourceExists = await fs.pathExists(source)\n    if (!sourceExists) {\n      logger.debug(`Source file ${source} does not exist, skipping copy`)\n      return\n    }\n\n    await fs.copy(source, destination, { overwrite: false })\n    logger.success(`Copied ${source} to ${destination}`)\n  }\n\n  /**\n   * Calculate unique port for workspace\n   * Implements:\n   * - Issue/PR: 3000 + issue/PR number\n   * - Branch: 3000 + deterministic hash offset (1-999)\n   */\n  calculatePort(options: PortAssignmentOptions): number {\n    const basePort = options.basePort ?? 3000\n\n    // Priority: issueNumber > prNumber > branchName > basePort only\n    if (options.issueNumber !== undefined) {\n      // Try to parse as number for backward compatibility\n      const numericIssue = typeof options.issueNumber === 'number'\n        ? options.issueNumber\n        : parseInt(String(options.issueNumber), 10)\n\n      if (!isNaN(numericIssue) && String(numericIssue) === String(options.issueNumber)) {\n        // Purely numeric issue ID - use arithmetic port calculation\n        const port = basePort + numericIssue\n        // Validate port range\n        if (port > 65535) {\n          throw new Error(\n            `Calculated port ${port} exceeds maximum (65535). Use a lower base port or issue number.`\n          )\n        }\n        return port\n      }\n      // Alphanumeric ID - use hash-based calculation\n      return calculatePortForBranch(String(options.issueNumber), basePort)\n    }\n\n    if (options.prNumber !== undefined) {\n      const port = basePort + options.prNumber\n      // Validate port range\n      if (port > 65535) {\n        throw new Error(\n          `Calculated port ${port} exceeds maximum (65535). Use a lower base port or PR number.`\n        )\n      }\n      return port\n    }\n\n    if (options.branchName !== undefined) {\n      // Use deterministic hash for branch-based workspaces\n      return calculatePortForBranch(options.branchName, basePort)\n    }\n\n    // Fallback: basePort only (no offset)\n    return basePort\n  }\n\n  /**\n   * Set port environment variable for workspace\n   */\n  async setPortForWorkspace(\n    envFilePath: string,\n    issueNumber?: string | number,\n    prNumber?: number,\n    branchName?: string\n  ): Promise<number> {\n    const options: PortAssignmentOptions = {}\n    if (issueNumber !== undefined) {\n      options.issueNumber = issueNumber\n    }\n    if (prNumber !== undefined) {\n      options.prNumber = prNumber\n    }\n    if (branchName !== undefined) {\n      options.branchName = branchName\n    }\n    const port = this.calculatePort(options)\n    await this.setEnvVar(envFilePath, 'PORT', String(port))\n    return port\n  }\n\n  /**\n   * Validate environment configuration\n   */\n  async validateEnvFile(\n    filePath: string\n  ): Promise<{ valid: boolean; errors: string[] }> {\n    try {\n      const content = await fs.readFile(filePath, 'utf8')\n      const envMap = parseEnvFile(content)\n      const errors: string[] = []\n\n      // Validate each variable name\n      for (const [key, value] of envMap.entries()) {\n        const validation = validateEnvVariable(key, value)\n        if (!validation.valid) {\n          errors.push(`${key}: ${validation.error}`)\n        }\n      }\n\n      return {\n        valid: errors.length === 0,\n        errors,\n      }\n    } catch (error) {\n      return {\n        valid: false,\n        errors: [\n          `Failed to read or parse file: ${error instanceof Error ? error.message : String(error)}`,\n        ],\n      }\n    }\n  }\n\n  /**\n   * Create backup of existing file\n   */\n  private async createBackup(filePath: string): Promise<string> {\n    const timestamp = new Date().toISOString().replace(/[:.]/g, '-')\n    const backupPath = `${filePath}${this.backupSuffix}-${timestamp}`\n    await fs.copy(filePath, backupPath)\n    logger.debug(`Created backup at ${backupPath}`)\n    return backupPath\n  }\n}\n","import fs from 'fs-extra'\nimport path from 'path'\nimport os from 'os'\nimport { runScript } from '../utils/package-manager.js'\nimport { readPackageJson, hasScript } from '../utils/package-json.js'\nimport { logger } from '../utils/logger.js'\n\nexport class CLIIsolationManager {\n  private readonly iloomBinDir: string\n\n  constructor() {\n    this.iloomBinDir = path.join(os.homedir(), '.iloom', 'bin')\n  }\n\n  /**\n   * Setup CLI isolation for a worktree\n   * - Build the project\n   * - Create versioned symlinks\n   * - Check PATH configuration\n   * @param worktreePath Path to the worktree\n   * @param identifier Issue/PR number or branch identifier\n   * @param binEntries Bin entries from package.json\n   * @returns Array of created symlink names\n   */\n  async setupCLIIsolation(\n    worktreePath: string,\n    identifier: string | number,\n    binEntries: Record<string, string>\n  ): Promise<string[]> {\n    // 1. Build the project\n    await this.buildProject(worktreePath)\n\n    // 2. Verify bin targets exist and are executable\n    await this.verifyBinTargets(worktreePath, binEntries)\n\n    // 3. Create ~/.iloom/bin if needed\n    await fs.ensureDir(this.iloomBinDir)\n\n    // 4. Create versioned symlinks\n    const symlinkNames = await this.createVersionedSymlinks(\n      worktreePath,\n      identifier,\n      binEntries\n    )\n\n    // 5. Check PATH and provide instructions if needed\n    await this.ensureIloomBinInPath()\n\n    return symlinkNames\n  }\n\n  /**\n   * Build the project using package.json build script\n   * @param worktreePath Path to the worktree\n   */\n  private async buildProject(worktreePath: string): Promise<void> {\n    const pkgJson = await readPackageJson(worktreePath)\n\n    if (!hasScript(pkgJson, 'build')) {\n      logger.warn('No build script found in package.json - skipping build')\n      return\n    }\n\n    logger.info('Building CLI tool...')\n    await runScript('build', worktreePath, [], { quiet: true })\n    logger.success('Build completed')\n  }\n\n  /**\n   * Verify bin targets exist and are executable\n   * @param worktreePath Path to the worktree\n   * @param binEntries Bin entries from package.json\n   */\n  private async verifyBinTargets(\n    worktreePath: string,\n    binEntries: Record<string, string>\n  ): Promise<void> {\n    for (const binPath of Object.values(binEntries)) {\n      const targetPath = path.resolve(worktreePath, binPath)\n\n      // Check if file exists\n      const exists = await fs.pathExists(targetPath)\n      if (!exists) {\n        throw new Error(`Bin target does not exist: ${targetPath}`)\n      }\n\n      // Check if file is executable\n      try {\n        await fs.access(targetPath, fs.constants.X_OK)\n      } catch {\n        // File is not executable, but that's okay - symlink will work anyway\n        // The shebang in the file will determine how it's executed\n      }\n    }\n  }\n\n  /**\n   * Create versioned symlinks in ~/.iloom/bin\n   * @param worktreePath Path to the worktree\n   * @param identifier Issue/PR number or branch identifier\n   * @param binEntries Bin entries from package.json\n   * @returns Array of created symlink names\n   */\n  private async createVersionedSymlinks(\n    worktreePath: string,\n    identifier: string | number,\n    binEntries: Record<string, string>\n  ): Promise<string[]> {\n    const symlinkNames: string[] = []\n\n    for (const [binName, binPath] of Object.entries(binEntries)) {\n      const versionedName = `${binName}-${identifier}`\n      const targetPath = path.resolve(worktreePath, binPath)\n      const symlinkPath = path.join(this.iloomBinDir, versionedName)\n\n      // Create symlink\n      await fs.symlink(targetPath, symlinkPath)\n\n      logger.success(`CLI available: ${versionedName}`)\n      symlinkNames.push(versionedName)\n    }\n\n    return symlinkNames\n  }\n\n  /**\n   * Check if ~/.iloom/bin is in PATH and provide setup instructions\n   */\n  private async ensureIloomBinInPath(): Promise<void> {\n    const currentPath = process.env.PATH ?? ''\n    if (currentPath.includes('.iloom/bin')) {\n      return // Already configured\n    }\n\n    // Detect shell and RC file\n    const shell = this.detectShell()\n    const rcFile = this.getShellRcFile(shell)\n\n    // Print setup instructions\n    logger.warn('\\n⚠️  One-time PATH setup required:')\n    logger.warn(`   Add to ${rcFile}:`)\n    logger.warn(`   export PATH=\"$HOME/.iloom/bin:$PATH\"`)\n    logger.warn(`   Then run: source ${rcFile}\\n`)\n  }\n\n  /**\n   * Detect current shell\n   * @returns Shell name (zsh, bash, fish, etc.)\n   */\n  private detectShell(): string {\n    const shell = process.env.SHELL ?? ''\n    return shell.split('/').pop() ?? 'bash'\n  }\n\n  /**\n   * Get RC file path for shell\n   * @param shell Shell name\n   * @returns RC file path\n   */\n  private getShellRcFile(shell: string): string {\n    const rcFiles: Record<string, string> = {\n      zsh: '~/.zshrc',\n      bash: '~/.bashrc',\n      fish: '~/.config/fish/config.fish'\n    }\n    return rcFiles[shell] ?? '~/.bashrc'\n  }\n\n  /**\n   * Cleanup versioned CLI executables for a specific identifier\n   * Removes all symlinks matching the pattern: {binName}-{identifier}\n   *\n   * @param identifier - Issue/PR number or branch identifier\n   * @returns Array of removed symlink names\n   */\n  async cleanupVersionedExecutables(identifier: string | number): Promise<string[]> {\n    const removed: string[] = []\n\n    try {\n      const files = await fs.readdir(this.iloomBinDir)\n\n      for (const file of files) {\n        if (this.matchesIdentifier(file, identifier)) {\n          const symlinkPath = path.join(this.iloomBinDir, file)\n\n          try {\n            await fs.unlink(symlinkPath)\n            removed.push(file)\n          } catch (error) {\n            // Silently skip if symlink already gone (ENOENT)\n            const isEnoent = error && typeof error === 'object' && 'code' in error && error.code === 'ENOENT'\n            if (isEnoent) {\n              removed.push(file)\n              continue\n            }\n\n            // Log warning for other errors but continue cleanup\n            logger.warn(\n              `Failed to remove symlink ${file}: ${error instanceof Error ? error.message : 'Unknown error'}`\n            )\n          }\n        }\n      }\n    } catch (error) {\n      // Handle missing bin directory gracefully\n      const isEnoent = error && typeof error === 'object' && 'code' in error && error.code === 'ENOENT'\n      if (isEnoent) {\n        logger.warn('No CLI executables directory found - nothing to cleanup')\n        return []\n      }\n\n      // Re-throw unexpected errors\n      throw error\n    }\n\n    if (removed.length > 0) {\n      logger.success(`Removed CLI executables: ${removed.join(', ')}`)\n    }\n\n    return removed\n  }\n\n  /**\n   * Find orphaned symlinks in ~/.iloom/bin\n   * Returns symlinks that point to non-existent targets\n   *\n   * @returns Array of orphaned symlink information\n   */\n  async findOrphanedSymlinks(): Promise<Array<{ name: string; path: string; brokenTarget: string }>> {\n    const orphaned: Array<{ name: string; path: string; brokenTarget: string }> = []\n\n    try {\n      const files = await fs.readdir(this.iloomBinDir)\n\n      for (const file of files) {\n        const symlinkPath = path.join(this.iloomBinDir, file)\n\n        try {\n          const stats = await fs.lstat(symlinkPath)\n\n          if (stats.isSymbolicLink()) {\n            const target = await fs.readlink(symlinkPath)\n\n            // Check if target exists\n            try {\n              await fs.access(target)\n            } catch {\n              // Target doesn't exist - this is an orphaned symlink\n              orphaned.push({\n                name: file,\n                path: symlinkPath,\n                brokenTarget: target\n              })\n            }\n          }\n        } catch (error) {\n          // Skip files we can't read\n          logger.warn(\n            `Failed to check symlink ${file}: ${error instanceof Error ? error.message : 'Unknown error'}`\n          )\n        }\n      }\n    } catch (error) {\n      // Handle missing bin directory\n      const isEnoent = error && typeof error === 'object' && 'code' in error && error.code === 'ENOENT'\n      if (isEnoent) {\n        return []\n      }\n\n      // Re-throw unexpected errors\n      throw error\n    }\n\n    return orphaned\n  }\n\n  /**\n   * Cleanup all orphaned symlinks\n   * Removes symlinks that point to non-existent targets\n   *\n   * @returns Number of symlinks removed\n   */\n  async cleanupOrphanedSymlinks(): Promise<number> {\n    const orphaned = await this.findOrphanedSymlinks()\n    let removedCount = 0\n\n    for (const symlink of orphaned) {\n      try {\n        await fs.unlink(symlink.path)\n        removedCount++\n        logger.success(`Removed orphaned symlink: ${symlink.name}`)\n      } catch (error) {\n        logger.warn(\n          `Failed to remove orphaned symlink ${symlink.name}: ${error instanceof Error ? error.message : 'Unknown error'}`\n        )\n      }\n    }\n\n    return removedCount\n  }\n\n  /**\n   * Check if a filename matches the versioned pattern for an identifier\n   * Pattern: {binName}-{identifier}\n   *\n   * @param fileName - Name of the file to check\n   * @param identifier - Issue/PR number or branch identifier\n   * @returns True if the filename matches the pattern\n   */\n  private matchesIdentifier(fileName: string, identifier: string | number): boolean {\n    const suffix = `-${identifier}`\n    return fileName.endsWith(suffix)\n  }\n}\n","import type { DatabaseProvider } from '../types/index.js'\nimport { EnvironmentManager } from './EnvironmentManager.js'\nimport { createLogger } from '../utils/logger.js'\n\nconst logger = createLogger({ prefix: '🗂️' })\n\n/**\n * Database Manager - orchestrates database operations with conditional execution\n * Ports functionality from bash scripts with guard conditions:\n *   1. Database provider must be properly configured (provider.isConfigured())\n *   2. The worktree's .env file must contain the configured database URL variable (default: DATABASE_URL)\n *\n * This ensures database branching only occurs for projects that actually use databases\n */\nexport class DatabaseManager {\n  constructor(\n    private provider: DatabaseProvider,\n    private environment: EnvironmentManager,\n    private databaseUrlEnvVarName: string = 'DATABASE_URL'\n  ) {\n    // Debug: Show which database URL variable name is configured\n    if (databaseUrlEnvVarName !== 'DATABASE_URL') {\n      logger.debug(`🔧 DatabaseManager configured with custom variable: ${databaseUrlEnvVarName}`)\n    } else {\n      logger.debug('🔧 DatabaseManager using default variable: DATABASE_URL')\n    }\n  }\n\n  /**\n   * Get the configured database URL environment variable name\n   */\n  getConfiguredVariableName(): string {\n    return this.databaseUrlEnvVarName\n  }\n\n  /**\n   * Check if database branching should be used\n   * Requires BOTH conditions:\n   *   1. Database provider is properly configured (checked via provider.isConfigured())\n   *   2. .env file contains the configured database URL variable\n   */\n  async shouldUseDatabaseBranching(envFilePath: string): Promise<boolean> {\n    // Check for provider configuration\n    if (!this.provider.isConfigured()) {\n      logger.debug('Skipping database branching: Database provider not configured')\n      return false\n    }\n\n    // Check if .env has the configured database URL variable\n    const hasDatabaseUrl = await this.hasDatabaseUrlInEnv(envFilePath)\n    if (!hasDatabaseUrl) {\n      logger.debug(\n        'Skipping database branching: configured database URL variable not found in .env file'\n      )\n      return false\n    }\n\n    return true\n  }\n\n  /**\n   * Create database branch only if configured\n   * Returns connection string if branch was created, null if skipped\n   *\n   * @param branchName - Name of the branch to create\n   * @param envFilePath - Path to .env file for configuration checks\n   * @param cwd - Optional working directory to run commands from\n   * @param fromBranch - Optional parent branch to create from (for child looms)\n   */\n  async createBranchIfConfigured(\n    branchName: string,\n    envFilePath: string,\n    cwd?: string,\n    fromBranch?: string\n  ): Promise<string | null> {\n    // Guard condition: check if database branching should be used\n    if (!(await this.shouldUseDatabaseBranching(envFilePath))) {\n      return null\n    }\n\n    // Check CLI availability and authentication\n    if (!(await this.provider.isCliAvailable())) {\n      logger.warn('Skipping database branch creation: Neon CLI not available')\n      logger.warn('Install with: npm install -g neonctl')\n      return null\n    }\n\n    try {\n      const isAuth = await this.provider.isAuthenticated(cwd)\n      if (!isAuth) {\n        logger.warn('Skipping database branch creation: Not authenticated with Neon CLI')\n        logger.warn('Run: neon auth')\n        return null\n      }\n    } catch (error) {\n      // Authentication check failed with an unexpected error - surface it\n      const errorMessage = error instanceof Error ? error.message : String(error)\n      logger.error(`Database authentication check failed: ${errorMessage}`)\n      throw error\n    }\n\n    try {\n      // Create the branch (which checks for preview first)\n      // Pass fromBranch if provided (for child looms), otherwise undefined (uses configured parent)\n      const connectionString = await this.provider.createBranch(branchName, fromBranch, cwd)\n      logger.success(`Database branch ready: ${this.provider.sanitizeBranchName(branchName)}`)\n      return connectionString\n    } catch (error) {\n      logger.error(\n        `Failed to create database branch: ${error instanceof Error ? error.message : String(error)}`\n      )\n      throw error\n    }\n  }\n\n  /**\n   * Delete database branch only if configured\n   * Returns result object indicating what happened\n   *\n   * @param branchName - Name of the branch to delete\n   * @param shouldCleanup - Boolean indicating if database cleanup should be performed (pre-fetched config)\n   * @param isPreview - Whether this is a preview database branch\n   * @param cwd - Optional working directory to run commands from (prevents issues with deleted directories)\n   */\n  async deleteBranchIfConfigured(\n    branchName: string,\n    shouldCleanup: boolean,\n    isPreview: boolean = false,\n    cwd?: string\n  ): Promise<import('../types/index.js').DatabaseDeletionResult> {\n    // If shouldCleanup is explicitly false, skip immediately\n    if (shouldCleanup === false) {\n      return {\n        success: true,\n        deleted: false,\n        notFound: true,  // Treat \"not configured\" as \"nothing to delete\"\n        branchName\n      }\n    }\n\n    // If shouldCleanup is explicitly true, validate provider configuration\n    if (!this.provider.isConfigured()) {\n      logger.debug('Skipping database branch deletion: Database provider not configured')\n      return {\n        success: true,\n        deleted: false,\n        notFound: true,\n        branchName\n      }\n    }\n\n    // Check CLI availability and authentication\n    if (!(await this.provider.isCliAvailable())) {\n      logger.info('Skipping database branch deletion: CLI tool not available')\n      return {\n        success: false,\n        deleted: false,\n        notFound: true,\n        error: \"CLI tool not available\",\n        branchName\n      }\n    }\n\n    try {\n      const isAuth = await this.provider.isAuthenticated(cwd)\n      if (!isAuth) {\n        logger.warn('Skipping database branch deletion: Not authenticated with DB Provider')\n        return {\n          success: false,\n          deleted: false,\n          notFound: false,\n          error: \"Not authenticated with DB Provider\",\n          branchName\n        }\n      }\n    } catch (error) {\n      // Authentication check failed with an unexpected error - surface it\n      const errorMessage = error instanceof Error ? error.message : String(error)\n      logger.error(`Database authentication check failed: ${errorMessage}`)\n      return {\n        success: false,\n        deleted: false,\n        notFound: false,\n        error: `Authentication check failed: ${errorMessage}`,\n        branchName\n      }\n    }\n\n    try {\n      // Call provider and return its result directly\n      const result = await this.provider.deleteBranch(branchName, isPreview, cwd)\n      return result\n    } catch (error) {\n      // Unexpected error (shouldn't happen since provider returns result object)\n      logger.warn(\n        `Unexpected error in database deletion: ${error instanceof Error ? error.message : String(error)}`\n      )\n      return {\n        success: false,\n        deleted: false,\n        notFound: false,\n        error: error instanceof Error ? error.message : String(error),\n        branchName\n      }\n    }\n  }\n\n  /**\n   * Get database branch name from connection string (reverse lookup)\n   * Returns branch name if provider supports reverse lookup, null otherwise\n   *\n   * @param connectionString - Database connection string\n   * @param cwd - Optional working directory to run commands from\n   */\n  async getBranchNameFromConnectionString(connectionString: string, cwd?: string): Promise<string | null> {\n    // Check if provider supports reverse lookup (duck typing)\n    if (!this.provider.isConfigured()) {\n      logger.debug('Provider not configured, skipping reverse lookup')\n      return null\n    }\n\n    if ('getBranchNameFromConnectionString' in this.provider &&\n        typeof this.provider.getBranchNameFromConnectionString === 'function') {\n      return this.provider.getBranchNameFromConnectionString(connectionString, cwd)\n    }\n\n    logger.debug('Provider does not support reverse lookup')\n    return null\n  }\n\n  /**\n   * Check if .env has the configured database URL variable\n   * CRITICAL: If user explicitly configured a custom variable name (not default),\n   * throw an error if it's missing from .env\n   */\n  private async hasDatabaseUrlInEnv(envFilePath: string): Promise<boolean> {\n    try {\n      const envMap = await this.environment.readEnvFile(envFilePath)\n\n      // Debug: Show what we're looking for\n      if (this.databaseUrlEnvVarName !== 'DATABASE_URL') {\n        logger.debug(`Looking for custom database URL variable: ${this.databaseUrlEnvVarName}`)\n      } else {\n        logger.debug('Looking for default database URL variable: DATABASE_URL')\n      }\n\n      // Check configured variable first\n      if (envMap.has(this.databaseUrlEnvVarName)) {\n        if (this.databaseUrlEnvVarName !== 'DATABASE_URL') {\n          logger.debug(`✅ Found custom database URL variable: ${this.databaseUrlEnvVarName}`)\n        } else {\n          logger.debug(`✅ Found default database URL variable: DATABASE_URL`)\n        }\n        return true\n      }\n\n      // If user explicitly configured a custom variable name (not the default)\n      // and it's missing, throw an error\n      if (this.databaseUrlEnvVarName !== 'DATABASE_URL') {\n        logger.debug(`❌ Custom database URL variable '${this.databaseUrlEnvVarName}' not found in .env file`)\n        throw new Error(\n          `Configured database URL environment variable '${this.databaseUrlEnvVarName}' not found in .env file. ` +\n          `Please add it to your .env file or update your iloom configuration.`\n        )\n      }\n\n      // Fall back to DATABASE_URL when using default configuration\n      const hasDefaultVar = envMap.has('DATABASE_URL')\n      if (hasDefaultVar) {\n        logger.debug('✅ Found fallback DATABASE_URL variable')\n      } else {\n        logger.debug('❌ No DATABASE_URL variable found in .env file')\n      }\n      return hasDefaultVar\n    } catch (error) {\n      // Re-throw configuration errors\n      if (error instanceof Error && error.message.includes('not found in .env')) {\n        throw error\n      }\n      // Return false for file read errors\n      return false\n    }\n  }\n}\n","import path from 'path'\nimport { GitWorktreeManager } from './GitWorktreeManager.js'\nimport { DatabaseManager } from './DatabaseManager.js'\nimport { ProcessManager } from './process/ProcessManager.js'\nimport { CLIIsolationManager } from './CLIIsolationManager.js'\nimport { SettingsManager } from './SettingsManager.js'\nimport { logger } from '../utils/logger.js'\nimport { hasUncommittedChanges, executeGitCommand, findMainWorktreePathWithSettings, extractIssueNumber } from '../utils/git.js'\n\nimport type {\n\tResourceCleanupOptions,\n\tCleanupResult,\n\tOperationResult,\n\tSafetyCheck,\n\tBranchDeleteOptions,\n} from '../types/cleanup.js'\nimport type { GitWorktree } from '../types/worktree.js'\nimport type { ParsedInput } from '../commands/start.js'\n\n/**\n * Manages resource cleanup for worktrees\n * Provides shared cleanup functionality for finish and cleanup commands\n */\nexport class ResourceCleanup {\n\tprivate settingsManager: SettingsManager\n\n\tconstructor(\n\t\tprivate gitWorktree: GitWorktreeManager,\n\t\tprivate processManager: ProcessManager,\n\t\tprivate database?: DatabaseManager,\n\t\tprivate cliIsolation?: CLIIsolationManager,\n\t\tsettingsManager?: SettingsManager\n\t) {\n\t\tthis.settingsManager = settingsManager ?? new SettingsManager()\n\t}\n\n\t/**\n\t * Cleanup a worktree and associated resources\n\t * Main orchestration method\n\t *\n\t * @param parsed - ParsedInput from IdentifierParser with type information\n\t * @param options - Cleanup options\n\t */\n\tasync cleanupWorktree(\n\t\tparsed: ParsedInput,\n\t\toptions: ResourceCleanupOptions = {}\n\t): Promise<CleanupResult> {\n\t\tconst operations: OperationResult[] = []\n\t\tconst errors: Error[] = []\n\n\t\tconst displayIdentifier = parsed.branchName ?? parsed.number?.toString() ?? parsed.originalInput\n\t\tlogger.info(`Starting cleanup for: ${displayIdentifier}`)\n\n\t\t// Extract number from ParsedInput for port calculation\n\t\tconst number = parsed.number\n\n\t\t// Step 1: Terminate dev server if applicable\n\t\tif (number !== undefined) {\n\t\t\tconst port = this.processManager.calculatePort(number)\n\n\t\t\tif (options.dryRun) {\n\t\t\t\toperations.push({\n\t\t\t\t\ttype: 'dev-server',\n\t\t\t\t\tsuccess: true,\n\t\t\t\t\tmessage: `[DRY RUN] Would check for dev server on port ${port}`,\n\t\t\t\t})\n\t\t\t} else {\n\t\t\t\ttry {\n\t\t\t\t\tconst terminated = await this.terminateDevServer(port)\n\t\t\t\t\toperations.push({\n\t\t\t\t\t\ttype: 'dev-server',\n\t\t\t\t\t\tsuccess: true,\n\t\t\t\t\t\tmessage: terminated\n\t\t\t\t\t\t\t? `Dev server on port ${port} terminated`\n\t\t\t\t\t\t\t: `No dev server running on port ${port}`,\n\t\t\t\t\t})\n\t\t\t\t} catch (error) {\n\t\t\t\t\tconst err = error instanceof Error ? error : new Error('Unknown error')\n\t\t\t\t\terrors.push(err)\n\t\t\t\t\toperations.push({\n\t\t\t\t\t\ttype: 'dev-server',\n\t\t\t\t\t\tsuccess: false,\n\t\t\t\t\t\tmessage: `Failed to terminate dev server`,\n\t\t\t\t\t\terror: err.message,\n\t\t\t\t\t})\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\t// Step 2: Find worktree using specific methods based on type\n\t\tlet worktree: GitWorktree | null = null\n\t\ttry {\n\t\t\t// Use specific finding methods based on parsed type for precision\n\t\t\tif (parsed.type === 'pr' && parsed.number !== undefined) {\n\t\t\t\t// For PRs, ensure the number is numeric (PRs are always numeric per GitHub)\n\t\t\t\tconst prNumber = typeof parsed.number === 'number' ? parsed.number : Number(parsed.number)\n\t\t\t\tif (isNaN(prNumber) || !isFinite(prNumber)) {\n\t\t\t\t\tthrow new Error(`Invalid PR number: ${parsed.number}. PR numbers must be numeric.`)\n\t\t\t\t}\n\t\t\t\t// For PRs, pass empty string for branchName since we're detecting from path pattern\n\t\t\t\tworktree = await this.gitWorktree.findWorktreeForPR(prNumber, '')\n\t\t\t} else if (parsed.type === 'issue' && parsed.number !== undefined) {\n\t\t\t\tworktree = await this.gitWorktree.findWorktreeForIssue(parsed.number)\n\t\t\t} else if (parsed.type === 'branch' && parsed.branchName) {\n\t\t\t\tworktree = await this.gitWorktree.findWorktreeForBranch(parsed.branchName)\n\t\t\t}\n\n\t\t\tif (!worktree) {\n\t\t\t\tthrow new Error(`No worktree found for identifier: ${displayIdentifier}`)\n\t\t\t}\n\n\t\t\tlogger.debug(`Found worktree: path=\"${worktree.path}\", branch=\"${worktree.branch}\"`)\n\t\t} catch (error) {\n\t\t\tconst err = error instanceof Error ? error : new Error('Unknown error')\n\t\t\terrors.push(err)\n\n\t\t\treturn {\n\t\t\t\tidentifier: displayIdentifier,\n\t\t\t\tsuccess: false,\n\t\t\t\toperations,\n\t\t\t\terrors,\n\t\t\t\trollbackRequired: false,\n\t\t\t}\n\t\t}\n\n\t\t// Step 2.5: Validate safety before proceeding with cleanup (unless force flag is set)\n\t\tif (!options.force) {\n\t\t\tconst safety = await this.validateWorktreeSafety(worktree, parsed.originalInput)\n\n\t\t\tif (!safety.isSafe) {\n\t\t\t\t// Format blocker messages for error output\n\t\t\t\tconst blockerMessage = safety.blockers.join('\\n\\n')\n\t\t\t\tthrow new Error(`Cannot cleanup:\\n\\n${blockerMessage}`)\n\t\t\t}\n\n\t\t\t// Log warnings if any\n\t\t\tif (safety.warnings.length > 0) {\n\t\t\t\tsafety.warnings.forEach(warning => {\n\t\t\t\t\tlogger.warn(warning)\n\t\t\t\t})\n\t\t\t}\n\t\t}\n\n\t\t// Step 3: Pre-fetch database configuration before worktree removal\n\t\t// This config is used AFTER worktree deletion when env file no longer exists\n\t\tlet databaseConfig: { shouldCleanup: boolean; envFilePath: string } | null = null\n\t\tif (!options.keepDatabase && worktree) {\n\t\t\tconst envFilePath = path.join(worktree.path, '.env')\n\t\t\ttry {\n\t\t\t\t// Pre-check if database cleanup should happen by reading .env file now\n\t\t\t\tconst shouldCleanup = this.database\n\t\t\t\t\t? await this.database.shouldUseDatabaseBranching(envFilePath)\n\t\t\t\t\t: false\n\t\t\t\tdatabaseConfig = { shouldCleanup, envFilePath }\n\t\t\t} catch (error) {\n\t\t\t\t// If we can't read the config, we'll skip database cleanup\n\t\t\t\tlogger.warn(\n\t\t\t\t\t`Failed to read database config from ${envFilePath}, skipping database cleanup: ${\n\t\t\t\t\t\terror instanceof Error ? error.message : String(error)\n\t\t\t\t\t}`\n\t\t\t\t)\n\t\t\t\tdatabaseConfig = { shouldCleanup: false, envFilePath }\n\t\t\t}\n\t\t}\n\n\t\t// Step 3.5: Find main worktree path before deletion (needed for branch and database operations)\n\t\tlet mainWorktreePath: string | null = null\n\t\tif (!options.dryRun) {\n\t\t\ttry {\n\t\t\t\tmainWorktreePath = await findMainWorktreePathWithSettings(worktree.path, this.settingsManager)\n\t\t\t} catch (error) {\n\t\t\t\tlogger.warn(\n\t\t\t\t\t`Failed to find main worktree path: ${error instanceof Error ? error.message : String(error)}`\n\t\t\t\t)\n\t\t\t}\n\t\t}\n\n\t\t// Step 4: Remove worktree\n\t\tif (options.dryRun) {\n\t\t\toperations.push({\n\t\t\t\ttype: 'worktree',\n\t\t\t\tsuccess: true,\n\t\t\t\tmessage: `[DRY RUN] Would remove worktree: ${worktree.path}`,\n\t\t\t})\n\t\t} else {\n\t\t\ttry {\n\t\t\t\tconst worktreeOptions: { force?: boolean; removeDirectory: true; removeBranch: false } =\n\t\t\t\t\t{\n\t\t\t\t\t\tremoveDirectory: true,\n\t\t\t\t\t\tremoveBranch: false, // Handle branch separately\n\t\t\t\t\t}\n\t\t\t\tif (options.force !== undefined) {\n\t\t\t\t\tworktreeOptions.force = options.force\n\t\t\t\t}\n\t\t\t\tawait this.gitWorktree.removeWorktree(worktree.path, worktreeOptions)\n\n\t\t\t\toperations.push({\n\t\t\t\t\ttype: 'worktree',\n\t\t\t\t\tsuccess: true,\n\t\t\t\t\tmessage: `Worktree removed: ${worktree.path}`,\n\t\t\t\t})\n\t\t\t} catch (error) {\n\t\t\t\tconst err = error instanceof Error ? error : new Error('Unknown error')\n\t\t\t\terrors.push(err)\n\t\t\t\toperations.push({\n\t\t\t\t\ttype: 'worktree',\n\t\t\t\t\tsuccess: false,\n\t\t\t\t\tmessage: `Failed to remove worktree`,\n\t\t\t\t\terror: err.message,\n\t\t\t\t})\n\t\t\t}\n\t\t}\n\n\t\t// Step 5: Delete branch if requested\n\t\tif (options.deleteBranch && worktree) {\n\t\t\tif (options.dryRun) {\n\t\t\t\toperations.push({\n\t\t\t\t\ttype: 'branch',\n\t\t\t\t\tsuccess: true,\n\t\t\t\t\tmessage: `[DRY RUN] Would delete branch: ${worktree.branch}`,\n\t\t\t\t})\n\t\t\t} else {\n\t\t\t\ttry {\n\t\t\t\t\tconst branchOptions: BranchDeleteOptions = { dryRun: false }\n\t\t\t\t\tif (options.force !== undefined) {\n\t\t\t\t\t\tbranchOptions.force = options.force\n\t\t\t\t\t}\n\t\t\t\t\t// Pass main worktree path to ensure we can execute git commands\n\t\t\t\t\tawait this.deleteBranch(worktree.branch, branchOptions, mainWorktreePath ?? undefined)\n\n\t\t\t\t\toperations.push({\n\t\t\t\t\t\ttype: 'branch',\n\t\t\t\t\t\tsuccess: true,\n\t\t\t\t\t\tmessage: `Branch deleted: ${worktree.branch}`,\n\t\t\t\t\t})\n\t\t\t\t} catch (error) {\n\t\t\t\t\tconst err = error instanceof Error ? error : new Error('Unknown error')\n\t\t\t\t\terrors.push(err)\n\t\t\t\t\toperations.push({\n\t\t\t\t\t\ttype: 'branch',\n\t\t\t\t\t\tsuccess: false,\n\t\t\t\t\t\tmessage: `Failed to delete branch`,\n\t\t\t\t\t\terror: err.message,\n\t\t\t\t\t})\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\t// Step 5.5: Cleanup CLI symlinks if CLI isolation is available\n\t\t// Derive identifier from parsed input (number for issue/PR, branchName for branch)\n\t\tconst cliIdentifier = parsed.number ?? parsed.branchName\n\t\tif (this.cliIsolation && cliIdentifier !== undefined) {\n\t\t\tif (options.dryRun) {\n\t\t\t\toperations.push({\n\t\t\t\t\ttype: 'cli-symlinks',\n\t\t\t\t\tsuccess: true,\n\t\t\t\t\tmessage: `[DRY RUN] Would cleanup CLI symlinks for: ${cliIdentifier}`,\n\t\t\t\t})\n\t\t\t} else {\n\t\t\t\ttry {\n\t\t\t\t\tconst removed = await this.cliIsolation.cleanupVersionedExecutables(cliIdentifier)\n\t\t\t\t\toperations.push({\n\t\t\t\t\t\ttype: 'cli-symlinks',\n\t\t\t\t\t\tsuccess: true,\n\t\t\t\t\t\tmessage: removed.length > 0\n\t\t\t\t\t\t\t? `CLI symlinks removed: ${removed.length}`\n\t\t\t\t\t\t\t: 'No CLI symlinks to cleanup',\n\t\t\t\t\t})\n\t\t\t\t} catch (error) {\n\t\t\t\t\t// Log warning but don't fail\n\t\t\t\t\tconst err = error instanceof Error ? error : new Error('Unknown error')\n\t\t\t\t\terrors.push(err)\n\t\t\t\t\tlogger.warn(\n\t\t\t\t\t\t`CLI symlink cleanup failed: ${err.message}`\n\t\t\t\t\t)\n\t\t\t\t\toperations.push({\n\t\t\t\t\t\ttype: 'cli-symlinks',\n\t\t\t\t\t\tsuccess: false,\n\t\t\t\t\t\tmessage: 'CLI symlink cleanup failed (non-fatal)',\n\t\t\t\t\t})\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\t// Step 6: Cleanup database after worktree and branch removal (using pre-read config)\n\t\tif (databaseConfig && worktree) {\n\t\t\tif (options.dryRun) {\n\t\t\t\toperations.push({\n\t\t\t\t\ttype: 'database',\n\t\t\t\t\tsuccess: true,\n\t\t\t\t\tmessage: `[DRY RUN] Would cleanup database branch for: ${worktree.branch}`,\n\t\t\t\t})\n\t\t\t} else {\n\t\t\t\ttry {\n\t\t\t\t\tif (databaseConfig.shouldCleanup && this.database) {\n\t\t\t\t\t\ttry {\n\t\t\t\t\t\t\t// Call database deletion with pre-fetched shouldCleanup value and main worktree path\n\t\t\t\t\t\t\t// This avoids reading the already-deleted env file and running commands from deleted directories\n\t\t\t\t\t\t\tconst deletionResult = await this.database.deleteBranchIfConfigured(\n\t\t\t\t\t\t\t\tworktree.branch,\n\t\t\t\t\t\t\t\tdatabaseConfig.shouldCleanup,\n\t\t\t\t\t\t\t\tfalse, // isPreview\n\t\t\t\t\t\t\t\tmainWorktreePath ?? undefined\n\t\t\t\t\t\t\t)\n\n\t\t\t\t\t\t\t// Create operation result based on what actually happened\n\t\t\t\t\t\t\tif (deletionResult.deleted) {\n\t\t\t\t\t\t\t\t// Branch was actually deleted\n\t\t\t\t\t\t\t\tlogger.info(`Database branch deleted: ${worktree.branch}`)\n\t\t\t\t\t\t\t\toperations.push({\n\t\t\t\t\t\t\t\t\ttype: 'database',\n\t\t\t\t\t\t\t\t\tsuccess: true,\n\t\t\t\t\t\t\t\t\tmessage: `Database branch deleted`,\n\t\t\t\t\t\t\t\t\tdeleted: true,\n\t\t\t\t\t\t\t\t})\n\t\t\t\t\t\t\t} else if (deletionResult.notFound) {\n\t\t\t\t\t\t\t\t// Branch didn't exist - not an error, just nothing to delete\n\t\t\t\t\t\t\t\tlogger.debug(`No database branch found for: ${worktree.branch}`)\n\t\t\t\t\t\t\t\toperations.push({\n\t\t\t\t\t\t\t\t\ttype: 'database',\n\t\t\t\t\t\t\t\t\tsuccess: true,\n\t\t\t\t\t\t\t\t\tmessage: `No database branch found (skipped)`,\n\t\t\t\t\t\t\t\t\tdeleted: false,\n\t\t\t\t\t\t\t\t})\n\t\t\t\t\t\t\t} else if (deletionResult.userDeclined) {\n\t\t\t\t\t\t\t\t// User declined preview database deletion\n\t\t\t\t\t\t\t\tlogger.info('Preview database deletion declined by user')\n\t\t\t\t\t\t\t\toperations.push({\n\t\t\t\t\t\t\t\t\ttype: 'database',\n\t\t\t\t\t\t\t\t\tsuccess: true,\n\t\t\t\t\t\t\t\t\tmessage: `Database cleanup skipped (user declined)`,\n\t\t\t\t\t\t\t\t\tdeleted: false,\n\t\t\t\t\t\t\t\t})\n\t\t\t\t\t\t\t} else if (!deletionResult.success) {\n\t\t\t\t\t\t\t\t// Deletion failed with error\n\t\t\t\t\t\t\t\tconst errorMsg = deletionResult.error ?? 'Unknown error'\n\t\t\t\t\t\t\t\terrors.push(new Error(errorMsg))\n\t\t\t\t\t\t\t\tlogger.warn(`Database cleanup failed: ${errorMsg}`)\n\t\t\t\t\t\t\t\toperations.push({\n\t\t\t\t\t\t\t\t\ttype: 'database',\n\t\t\t\t\t\t\t\t\tsuccess: false, // Non-fatal, but report error\n\t\t\t\t\t\t\t\t\tmessage: `Database cleanup failed`,\n\t\t\t\t\t\t\t\t\terror: errorMsg,\n\t\t\t\t\t\t\t\t\tdeleted: false,\n\t\t\t\t\t\t\t\t})\n\t\t\t\t\t\t\t} else {\n\t\t\t\t\t\t\t\t// Unexpected state - log for debugging\n\t\t\t\t\t\t\t\terrors.push(new Error('Database cleanup in an unknown state'))\n\t\t\t\t\t\t\t\tlogger.warn('Database deletion returned unexpected result state')\n\t\t\t\t\t\t\t\toperations.push({\n\t\t\t\t\t\t\t\t\ttype: 'database',\n\t\t\t\t\t\t\t\t\tsuccess: false,\n\t\t\t\t\t\t\t\t\tmessage: `Database cleanup in an unknown state`,\n\t\t\t\t\t\t\t\t\tdeleted: false,\n\t\t\t\t\t\t\t\t})\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t} catch (error) {\n\t\t\t\t\t\t\t// Unexpected exception (shouldn't happen with result object pattern)\n\t\t\t\t\t\t\terrors.push(error instanceof Error ? error : new Error(String(error)))\n\t\t\t\t\t\t\tlogger.warn(\n\t\t\t\t\t\t\t\t`Unexpected database cleanup exception: ${error instanceof Error ? error.message : String(error)}`\n\t\t\t\t\t\t\t)\n\t\t\t\t\t\t\toperations.push({\n\t\t\t\t\t\t\t\ttype: 'database',\n\t\t\t\t\t\t\t\tsuccess: false,\n\t\t\t\t\t\t\t\tmessage: `Database cleanup failed`,\n\t\t\t\t\t\t\t\terror: error instanceof Error ? error.message : String(error),\n\t\t\t\t\t\t\t\tdeleted: false,\n\t\t\t\t\t\t\t})\n\t\t\t\t\t\t}\n\t\t\t\t\t} else {\n\t\t\t\t\t\t// Database manager not available or not configured\n\t\t\t\t\t\toperations.push({\n\t\t\t\t\t\t\ttype: 'database',\n\t\t\t\t\t\t\tsuccess: true,\n\t\t\t\t\t\t\tmessage: `Database cleanup skipped (not available)`,\n\t\t\t\t\t\t\tdeleted: false,\n\t\t\t\t\t\t})\n\t\t\t\t\t}\n\t\t\t\t} catch (error) {\n\t\t\t\t\t// This catch block is for any unexpected errors in the outer logic\n\t\t\t\t\tconst err = error instanceof Error ? error : new Error('Unknown error')\n\t\t\t\t\terrors.push(err)\n\t\t\t\t\toperations.push({\n\t\t\t\t\t\ttype: 'database',\n\t\t\t\t\t\tsuccess: false,\n\t\t\t\t\t\tmessage: `Database cleanup failed`,\n\t\t\t\t\t\terror: err.message,\n\t\t\t\t\t\tdeleted: false,\n\t\t\t\t\t})\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\t// Calculate overall success\n\t\tconst success = errors.length === 0\n\n\t\treturn {\n\t\t\tidentifier: displayIdentifier,\n\t\t\tbranchName: worktree?.branch,\n\t\t\tsuccess,\n\t\t\toperations,\n\t\t\terrors,\n\t\t\trollbackRequired: false, // Cleanup operations are generally not reversible\n\t\t}\n\t}\n\n\t/**\n\t * Terminate dev server on specified port\n\t */\n\tasync terminateDevServer(port: number): Promise<boolean> {\n\t\tlogger.debug(`Checking for dev server on port ${port}`)\n\n\t\tconst processInfo = await this.processManager.detectDevServer(port)\n\n\t\tif (!processInfo) {\n\t\t\tlogger.debug(`No process found on port ${port}`)\n\t\t\treturn false\n\t\t}\n\n\t\tif (!processInfo.isDevServer) {\n\t\t\tlogger.warn(\n\t\t\t\t`Process on port ${port} (${processInfo.name}) doesn't appear to be a dev server, skipping`\n\t\t\t)\n\t\t\treturn false\n\t\t}\n\n\t\tlogger.info(`Terminating dev server: ${processInfo.name} (PID: ${processInfo.pid})`)\n\n\t\tawait this.processManager.terminateProcess(processInfo.pid)\n\n\t\t// Verify termination\n\t\tconst isFree = await this.processManager.verifyPortFree(port)\n\t\tif (!isFree) {\n\t\t\tthrow new Error(`Dev server may still be running on port ${port}`)\n\t\t}\n\n\t\treturn true\n\t}\n\n\t/**\n\t * Delete a Git branch with safety checks\n\t *\n\t * @param branchName - Name of the branch to delete\n\t * @param options - Delete options (force, dryRun)\n\t * @param cwd - Working directory to execute git command from (defaults to finding main worktree)\n\t */\n\tasync deleteBranch(\n\t\tbranchName: string,\n\t\toptions: BranchDeleteOptions = {},\n\t\tcwd?: string\n\t): Promise<boolean> {\n\t\t// Get protected branches list from centralized method\n\t\tconst protectedBranches = await this.settingsManager.getProtectedBranches(cwd)\n\n\t\t// Check for protected branches\n\t\tif (protectedBranches.includes(branchName)) {\n\t\t\tthrow new Error(`Cannot delete protected branch: ${branchName}`)\n\t\t}\n\n\t\tif (options.dryRun) {\n\t\t\tlogger.info(`[DRY RUN] Would delete branch: ${branchName}`)\n\t\t\treturn true\n\t\t}\n\n\t\t// Use GitWorktreeManager's removeWorktree with removeBranch option\n\t\t// Or execute git branch -D directly via executeGitCommand\n\t\ttry {\n\t\t\t// Use provided cwd, or find main worktree path as fallback\n\t\t\t// This ensures we're not running git commands from a deleted directory\n\t\t\tlet workingDir = cwd ?? await findMainWorktreePathWithSettings(undefined, this.settingsManager)\t\t\t\n\n\t\t\t// Use safe delete (-d) unless force is specified\n\t\t\tconst deleteFlag = options.force ? '-D' : '-d'\n\t\t\tawait executeGitCommand(['branch', deleteFlag, branchName], {\n\t\t\t\tcwd: workingDir\n\t\t\t})\n\n\t\t\tlogger.info(`Branch deleted: ${branchName}`)\n\t\t\treturn true\n\t\t} catch (error) {\n\t\t\tif (options.force) {\n\t\t\t\tthrow error\n\t\t\t}\n\n\t\t\t// For safe delete failures, check if it's actually an unmerged branch error\n\t\t\t// and provide helpful message only in that case, otherwise show the real error\n\t\t\tconst errorMessage = error instanceof Error ? error.message : String(error)\n\n\t\t\t// Git error for unmerged branch typically contains \"not fully merged\"\n\t\t\tif (errorMessage.includes('not fully merged')) {\n\t\t\t\tthrow new Error(\n\t\t\t\t\t`Cannot delete unmerged branch '${branchName}'. Use --force to delete anyway.`\n\t\t\t\t)\n\t\t\t}\n\n\t\t\t// For other errors (like branch doesn't exist), show the actual git error\n\t\t\tthrow error\n\t\t}\n\t}\n\n\t/**\n\t * Cleanup database branch\n\t * Gracefully handles missing DatabaseManager\n\t *\n\t * @deprecated This method is deprecated and should not be used for post-deletion cleanup.\n\t * Use the pre-fetch mechanism in cleanupWorktree() instead.\n\t * This method will fail if called after worktree deletion because\n\t * it attempts to read the .env file which has been deleted.\n\t *\n\t * @param branchName - Name of the branch to delete\n\t * @param worktreePath - Path to worktree (must still exist with .env file)\n\t */\n\tasync cleanupDatabase(branchName: string, worktreePath: string): Promise<boolean> {\n\t\tif (!this.database) {\n\t\t\tlogger.debug('Database manager not available, skipping database cleanup')\n\t\t\treturn false\n\t\t}\n\n\t\ttry {\n\t\t\t// Pre-fetch configuration before deletion\n\t\t\tconst envFilePath = path.join(worktreePath, '.env')\n\t\t\tconst shouldCleanup = await this.database.shouldUseDatabaseBranching(envFilePath)\n\n\t\t\t// Find main worktree path to avoid running commands from potentially deleted directories\n\t\t\tlet cwd: string | undefined\n\t\t\ttry {\n\t\t\t\tcwd = await findMainWorktreePathWithSettings(worktreePath, this.settingsManager)\n\t\t\t} catch (error) {\n\t\t\t\t// If we can't find main worktree, commands will run from current directory\n\t\t\t\tlogger.debug(\n\t\t\t\t\t`Could not find main worktree path, using current directory: ${error instanceof Error ? error.message : String(error)}`\n\t\t\t\t)\n\t\t\t}\n\n\t\t\tconst result = await this.database.deleteBranchIfConfigured(\n\t\t\t\tbranchName,\n\t\t\t\tshouldCleanup,\n\t\t\t\tfalse, // isPreview\n\t\t\t\tcwd\n\t\t\t)\n\n\t\t\t// Only return true if deletion actually occurred\n\t\t\tif (result.deleted) {\n\t\t\t\tlogger.info(`Database branch deleted: ${branchName}`)\n\t\t\t\treturn true\n\t\t\t} else if (result.notFound) {\n\t\t\t\tlogger.debug(`No database branch found for: ${branchName}`)\n\t\t\t\treturn false\n\t\t\t} else if (result.userDeclined) {\n\t\t\t\tlogger.info('Preview database deletion declined by user')\n\t\t\t\treturn false\n\t\t\t} else if (!result.success) {\n\t\t\t\tlogger.warn(`Database cleanup failed: ${result.error ?? 'Unknown error'}`)\n\t\t\t\treturn false\n\t\t\t} else {\n\t\t\t\t// Unexpected state\n\t\t\t\tlogger.debug('Database deletion returned unexpected result')\n\t\t\t\treturn false\n\t\t\t}\n\t\t} catch (error) {\n\t\t\t// Unexpected exception\n\t\t\tlogger.warn(\n\t\t\t\t`Unexpected database cleanup error: ${error instanceof Error ? error.message : String(error)}`\n\t\t\t)\n\t\t\treturn false\n\t\t}\n\t}\n\n\t/**\n\t * Cleanup multiple worktrees\n\t */\n\tasync cleanupMultipleWorktrees(\n\t\tidentifiers: string[],\n\t\toptions: ResourceCleanupOptions = {}\n\t): Promise<CleanupResult[]> {\n\t\tconst results: CleanupResult[] = []\n\n\t\tfor (const identifier of identifiers) {\n\t\t\t// Parse the identifier to get ParsedInput format\n\t\t\tconst parsed = this.parseIdentifier(identifier)\n\t\t\tconst result = await this.cleanupWorktree(parsed, options)\n\t\t\tresults.push(result)\n\t\t}\n\n\t\treturn results\n\t}\n\n\t/**\n\t * Validate worktree safety given a worktree object\n\t * Private method used internally when worktree is already known\n\t */\n\tprivate async validateWorktreeSafety(\n\t\tworktree: GitWorktree,\n\t\tidentifier: string\n\t): Promise<SafetyCheck> {\n\t\tconst warnings: string[] = []\n\t\tconst blockers: string[] = []\n\n\t\t// Check if main worktree\n\t\tconst isMain = await this.gitWorktree.isMainWorktree(worktree, this.settingsManager)\n\t\tif (isMain) {\n\t\t\tblockers.push(`Cannot cleanup main worktree: \"${worktree.branch}\" @ \"${worktree.path}\"`)\n\t\t}\n\n\t\t// Check for uncommitted changes\n\t\tconst hasChanges = await hasUncommittedChanges(worktree.path)\n\t\tif (hasChanges) {\n\t\t\t// Create simple blocker message with actionable guidance\n\t\t\tconst blockerMessage =\n\t\t\t\t`Worktree has uncommitted changes.\\n\\n` +\n\t\t\t\t`Please resolve before cleanup - you have some options:\\n` +\n\t\t\t\t`  • Commit changes: cd ${worktree.path} && git commit -am \"message\"\\n` +\n\t\t\t\t`  • Stash changes: cd ${worktree.path} && git stash\\n` +\n\t\t\t\t`  • Force cleanup: il cleanup ${identifier} --force (WARNING: will discard changes)`\n\n\t\t\tblockers.push(blockerMessage)\n\t\t}\n\n\t\treturn {\n\t\t\tisSafe: blockers.length === 0,\n\t\t\twarnings,\n\t\t\tblockers,\n\t\t}\n\t}\n\n\t/**\n\t * Validate cleanup safety\n\t */\n\tasync validateCleanupSafety(identifier: string): Promise<SafetyCheck> {\n\t\tconst warnings: string[] = []\n\t\tconst blockers: string[] = []\n\n\t\t// Find worktree\n\t\tconst worktrees = await this.gitWorktree.findWorktreesByIdentifier(identifier)\n\n\t\tif (worktrees.length === 0) {\n\t\t\tblockers.push(`No worktree found for: ${identifier}`)\n\t\t\treturn { isSafe: false, warnings, blockers }\n\t\t}\n\n\t\tconst worktree = worktrees[0]\n\t\tif (!worktree) {\n\t\t\tblockers.push(`No worktree found for: ${identifier}`)\n\t\t\treturn { isSafe: false, warnings, blockers }\n\t\t}\n\n\t\t// Delegate to private method that validates the worktree\n\t\treturn await this.validateWorktreeSafety(worktree, identifier)\n\t}\n\n\t/**\n\t * Parse identifier to determine type and extract number\n\t * Helper method for port calculation\n\t */\n\tprivate parseIdentifier(identifier: string): ParsedInput {\n\t\t// Check for issue pattern\n\t\tconst issueId = extractIssueNumber(identifier)\n\t\tif (issueId !== null) {\n\t\t\treturn {\n\t\t\t\ttype: 'issue',\n\t\t\t\tnumber: issueId,\n\t\t\t\toriginalInput: identifier\n\t\t\t}\n\t\t}\n\n\t\t// Check for PR pattern\n\t\tconst prMatch = identifier.match(/(?:pr|PR)[/-](\\d+)/)\n\t\tif (prMatch?.[1]) {\n\t\t\treturn {\n\t\t\t\ttype: 'pr',\n\t\t\t\tnumber: parseInt(prMatch[1], 10),\n\t\t\t\toriginalInput: identifier\n\t\t\t}\n\t\t}\n\n\t\t// Check for numeric identifier\n\t\tconst numericMatch = identifier.match(/^#?(\\d+)$/)\n\t\tif (numericMatch?.[1]) {\n\t\t\t// Assume issue for numeric identifiers\n\t\t\treturn {\n\t\t\t\ttype: 'issue',\n\t\t\t\tnumber: parseInt(numericMatch[1], 10),\n\t\t\t\toriginalInput: identifier\n\t\t\t}\n\t\t}\n\n\t\t// Treat as branch name\n\t\treturn {\n\t\t\ttype: 'branch',\n\t\t\tbranchName: identifier,\n\t\t\toriginalInput: 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package/dist/chunk-G2IEYOLQ.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/types/github.ts","../src/lib/GitHubService.ts"],"sourcesContent":["// Core GitHub response types\nexport interface GitHubIssue {\n\tnumber: number\n\ttitle: string\n\tbody: string\n\tstate: 'OPEN' | 'CLOSED' // GitHub GraphQL format\n\tlabels: { name: string }[]\n\tassignees: { login: string }[]\n\turl: string\n\tcreatedAt: string\n\tupdatedAt: string\n}\n\n// Pull Request types\nexport interface GitHubPullRequest {\n\tnumber: number\n\ttitle: string\n\tbody: string\n\tstate: 'OPEN' | 'CLOSED' | 'MERGED'\n\theadRefName: string // source branch\n\tbaseRefName: string // target branch\n\turl: string\n\tisDraft: boolean\n\tmergeable: 'CONFLICTING' | 'MERGEABLE' | 'UNKNOWN'\n\tcreatedAt: string\n\tupdatedAt: string\n}\n\n// GitHub Projects types\nexport interface GitHubProject {\n\tnumber: number\n\tid: string\n\tname: string\n\tfields: ProjectField[]\n}\n\nexport interface ProjectField {\n\tid: string\n\tname: string\n\tdataType: 'SINGLE_SELECT' | 'TEXT' | 'NUMBER' | 'DATE'\n\toptions?: ProjectFieldOption[]\n}\n\nexport interface ProjectFieldOption {\n\tid: string\n\tname: string\n}\n\nexport interface ProjectItem {\n\tid: string\n\tcontent: {\n\t\ttype: 'Issue' | 'PullRequest' | 'DraftIssue'\n\t\tnumber: number\n\t}\n\tfieldValues: Record<string, unknown>\n}\n\n// Command result types\nexport interface GitHubCommandResult<T = unknown> {\n\tsuccess: boolean\n\tdata?: T\n\terror?: string\n\trateLimitRemaining?: number\n\trateLimitReset?: Date\n}\n\nexport interface GitHubAuthStatus {\n\thasAuth: boolean\n\tscopes: string[]\n\tusername?: string\n}\n\n// Input detection types\nexport interface GitHubInputDetection {\n\ttype: 'issue' | 'pr' | 'unknown'\n\tnumber: number | null\n\trawInput: string\n}\n\n// Context and error types\nexport interface GitHubContext {\n\tissue?: GitHubIssue\n\tpullRequest?: GitHubPullRequest\n\tformattedContext: string\n}\n\nexport enum GitHubErrorCode {\n\tNOT_FOUND = 'NOT_FOUND',\n\tUNAUTHORIZED = 'UNAUTHORIZED',\n\tRATE_LIMITED = 'RATE_LIMITED',\n\tNETWORK_ERROR = 'NETWORK_ERROR',\n\tINVALID_STATE = 'INVALID_STATE',\n\tMISSING_SCOPE = 'MISSING_SCOPE',\n}\n\nexport class GitHubError extends Error {\n\tconstructor(\n\t\tpublic code: GitHubErrorCode,\n\t\tmessage: string,\n\t\tpublic details?: unknown\n\t) {\n\t\tsuper(message)\n\t\tthis.name = 'GitHubError'\n\t}\n}\n","import type { Issue, PullRequest, IssueTrackerInputDetection } from '../types/index.js'\nimport type {\n\tGitHubIssue,\n\tGitHubPullRequest,\n\tGitHubProject,\n\tProjectItem,\n\tProjectField,\n} from '../types/github.js'\nimport { GitHubError, GitHubErrorCode } from '../types/github.js'\nimport {\n\texecuteGhCommand,\n\thasProjectScope,\n\tfetchGhIssue,\n\tfetchGhPR,\n\tfetchProjectList,\n\tfetchProjectItems,\n\tfetchProjectFields,\n\tupdateProjectItemField,\n\tcreateIssue,\n} from '../utils/github.js'\nimport { logger } from '../utils/logger.js'\nimport { promptConfirmation } from '../utils/prompt.js'\nimport type { IssueTracker } from './IssueTracker.js'\n\nexport class GitHubService implements IssueTracker {\n\t// IssueTracker interface implementation\n\treadonly providerName = 'github'\n\treadonly supportsPullRequests = true\n\tprivate prompter: (message: string) => Promise<boolean>\n\n\tconstructor(options?: {\n\t\tprompter?: (message: string) => Promise<boolean>\n\t}) {\n\t\t// Set up prompter (use provided or default to promptConfirmation)\n\t\tthis.prompter = options?.prompter ?? promptConfirmation\n\t}\n\n\t// Input detection - IssueTracker interface implementation\n\tpublic async detectInputType(input: string, repo?: string): Promise<IssueTrackerInputDetection> {\n\t\t// Pattern: #123 or just 123\n\t\tconst numberMatch = input.match(/^#?(\\d+)$/)\n\n\t\tif (!numberMatch?.[1]) {\n\t\t\treturn { type: 'unknown', identifier: null, rawInput: input }\n\t\t}\n\n\t\tconst number = parseInt(numberMatch[1], 10)\n\n\t\t// Try PR first (based on bash script logic at lines 500-533)\n\t\tlogger.debug('Checking if input is a PR', { number })\n\t\tconst pr = await this.isValidPR(number, repo)\n\t\tif (pr) {\n\t\t\treturn { type: 'pr', identifier: number.toString(), rawInput: input }\n\t\t}\n\n\t\t// Try issue next (lines 536-575 in bash)\n\t\tlogger.debug('Checking if input is an issue', { number })\n\t\tconst issue = await this.isValidIssue(number, repo)\n\t\tif (issue) {\n\t\t\treturn { type: 'issue', identifier: number.toString(), rawInput: input }\n\t\t}\n\n\t\t// Neither PR nor issue found\n\t\treturn { type: 'unknown', identifier: null, rawInput: input }\n\t}\n\n\t// Issue fetching with validation\n\tpublic async fetchIssue(issueNumber: number, repo?: string): Promise<Issue> {\n\t\ttry {\n\t\t\treturn await this.fetchIssueInternal(issueNumber, repo)\n\t\t} catch (error) {\n\t\t\t// Only throw NOT_FOUND for actual \"not found\" errors\n\t\t\tif (error instanceof Error && 'stderr' in error && (error as {stderr?: string}).stderr?.includes('Could not resolve')) {\n\t\t\t\tthrow new GitHubError(\n\t\t\t\t\tGitHubErrorCode.NOT_FOUND,\n\t\t\t\t\t`Issue #${issueNumber} not found`,\n\t\t\t\t\terror\n\t\t\t\t)\n\t\t\t}\n\t\t\t// Re-throw all other errors unchanged\n\t\t\tthrow error\n\t\t}\n\t}\n\n\t// Silent issue validation (for detection phase)\n\tpublic async isValidIssue(issueNumber: number, repo?: string): Promise<Issue | false> {\n\t\ttry {\n\t\t\treturn await this.fetchIssueInternal(issueNumber, repo)\n\t\t} catch (error) {\n\t\t\t// Silently return false for \"not found\" errors\n\t\t\tif (error instanceof Error && 'stderr' in error && (error as {stderr?: string}).stderr?.includes('Could not resolve')) {\n\t\t\t\treturn false\n\t\t\t}\n\t\t\t// Re-throw unexpected errors\n\t\t\tthrow error\n\t\t}\n\t}\n\n\t// Internal issue fetching logic (shared by fetchIssue and isValidIssue)\n\tprivate async fetchIssueInternal(issueNumber: number, repo?: string): Promise<Issue> {\n\t\tconst ghIssue = await fetchGhIssue(issueNumber, repo)\n\t\treturn this.mapGitHubIssueToIssue(ghIssue)\n\t}\n\n\tpublic async validateIssueState(issue: Issue): Promise<void> {\n\t\tif (issue.state === 'closed') {\n\t\t\tconst response = await this.promptUserConfirmation(\n\t\t\t\t`Issue #${issue.number} is closed. Continue anyway?`\n\t\t\t)\n\t\t\tif (!response) {\n\t\t\t\tthrow new GitHubError(\n\t\t\t\t\tGitHubErrorCode.INVALID_STATE,\n\t\t\t\t\t'User cancelled due to closed issue'\n\t\t\t\t)\n\t\t\t}\n\t\t}\n\t}\n\n\t// PR fetching with validation\n\tpublic async fetchPR(prNumber: number, repo?: string): Promise<PullRequest> {\n\t\ttry {\n\t\t\treturn await this.fetchPRInternal(prNumber, repo)\n\t\t} catch (error) {\n\t\t\t// Only throw NOT_FOUND for actual \"not found\" errors\n\t\t\tif (error instanceof Error && 'stderr' in error && (error as {stderr?: string}).stderr?.includes('Could not resolve')) {\n\t\t\t\tthrow new GitHubError(\n\t\t\t\t\tGitHubErrorCode.NOT_FOUND,\n\t\t\t\t\t`PR #${prNumber} not found`,\n\t\t\t\t\terror\n\t\t\t\t)\n\t\t\t}\n\t\t\t// Re-throw all other errors unchanged\n\t\t\tthrow error\n\t\t}\n\t}\n\n\t// Silent PR validation (for detection phase)\n\tpublic async isValidPR(prNumber: number, repo?: string): Promise<PullRequest | false> {\n\t\ttry {\n\t\t\treturn await this.fetchPRInternal(prNumber, repo)\n\t\t} catch (error) {\n\t\t\t// Silently return false for \"not found\" errors\n\t\t\tif (error instanceof Error && 'stderr' in error && (error as {stderr?: string}).stderr?.includes('Could not resolve')) {\n\t\t\t\treturn false\n\t\t\t}\n\t\t\t// Re-throw unexpected errors\n\t\t\tthrow error\n\t\t}\n\t}\n\n\t// Internal PR fetching logic (shared by fetchPR and isValidPR)\n\tprivate async fetchPRInternal(prNumber: number, repo?: string): Promise<PullRequest> {\n\t\tconst ghPR = await fetchGhPR(prNumber, repo)\n\t\treturn this.mapGitHubPRToPullRequest(ghPR)\n\t}\n\n\tpublic async validatePRState(pr: PullRequest): Promise<void> {\n\t\tif (pr.state === 'closed' || pr.state === 'merged') {\n\t\t\tconst response = await this.promptUserConfirmation(\n\t\t\t\t`PR #${pr.number} is ${pr.state}. Continue anyway?`\n\t\t\t)\n\t\t\tif (!response) {\n\t\t\t\tthrow new GitHubError(\n\t\t\t\t\tGitHubErrorCode.INVALID_STATE,\n\t\t\t\t\t`User cancelled due to ${pr.state} PR`\n\t\t\t\t)\n\t\t\t}\n\t\t}\n\t}\n\n\t// Issue creation\n\tpublic async createIssue(\n\t\ttitle: string,\n\t\tbody: string,\n\t\trepository?: string,\n\t\tlabels?: string[]\n\t): Promise<{ number: string | number; url: string }> {\n\t\t// logger.info('Creating GitHub issue', { title })\n\t\treturn createIssue(title, body, { repo: repository, labels })\n\t}\n\n\tpublic async getIssueUrl(issueNumber: number, repo?: string): Promise<string> {\n\t\tlogger.debug('Fetching issue URL', { issueNumber, repo })\n\t\tconst issue = await fetchGhIssue(issueNumber, repo)\n\t\treturn issue.url\n\t}\n\n\t// GitHub Projects integration\n\tpublic async moveIssueToInProgress(issueNumber: number): Promise<void> {\n\t\t// Based on bash script lines 374-463\n\t\tlogger.info('Moving issue to In Progress in GitHub Projects', {\n\t\t\tissueNumber,\n\t\t})\n\n\t\t// Check for project scope\n\t\tif (!(await hasProjectScope())) {\n\t\t\tlogger.warn('Missing project scope in GitHub CLI auth')\n\t\t\tthrow new GitHubError(\n\t\t\t\tGitHubErrorCode.MISSING_SCOPE,\n\t\t\t\t'GitHub CLI lacks project scope. Run: gh auth refresh -s project'\n\t\t\t)\n\t\t}\n\n\t\t// Get repository info\n\t\tlet owner: string\n\t\ttry {\n\t\t\tconst repoInfo = await executeGhCommand<{\n\t\t\t\towner: { login: string }\n\t\t\t\tname: string\n\t\t\t}>(['repo', 'view', '--json', 'owner,name'])\n\t\t\towner = repoInfo.owner.login\n\t\t} catch (error) {\n\t\t\tlogger.warn('Could not determine repository info', { error })\n\t\t\treturn\n\t\t}\n\n\t\t// List all projects\n\t\tlet projects: GitHubProject[]\n\t\ttry {\n\t\t\tprojects = await fetchProjectList(owner)\n\t\t} catch (error) {\n\t\t\tlogger.warn('Could not fetch projects', { owner, error })\n\t\t\treturn\n\t\t}\n\n\t\tif (!projects.length) {\n\t\t\tlogger.warn('No projects found', { owner })\n\t\t\treturn\n\t\t}\n\n\t\t// Process each project (lines 404-460 in bash)\n\t\tfor (const project of projects) {\n\t\t\tawait this.updateIssueStatusInProject(project, issueNumber, owner)\n\t\t}\n\t}\n\n\tprivate async updateIssueStatusInProject(\n\t\tproject: GitHubProject,\n\t\tissueNumber: number,\n\t\towner: string\n\t): Promise<void> {\n\t\t// Check if issue is in project\n\t\tlet items: ProjectItem[]\n\t\ttry {\n\t\t\titems = await fetchProjectItems(project.number, owner)\n\t\t} catch (error) {\n\t\t\tlogger.debug('Could not fetch project items', { project: project.number, error })\n\t\t\treturn\n\t\t}\n\n\t\t// Find issue item\n\t\tconst item = items.find(\n\t\t\t(i: ProjectItem) =>\n\t\t\t\ti.content.type === 'Issue' && i.content.number === issueNumber\n\t\t)\n\n\t\tif (!item) {\n\t\t\tlogger.debug('Issue not found in project', {\n\t\t\t\tissueNumber,\n\t\t\t\tprojectNumber: project.number,\n\t\t\t})\n\t\t\treturn\n\t\t}\n\n\t\t// Fetch project fields separately (like bash script does)\n\t\tlet fieldsData: { fields: ProjectField[] }\n\t\ttry {\n\t\t\tfieldsData = await fetchProjectFields(project.number, owner)\n\t\t} catch (error) {\n\t\t\tlogger.debug('Could not fetch project fields', { project: project.number, error })\n\t\t\treturn\n\t\t}\n\n\t\t// Find Status field and In Progress option\n\t\tconst statusField = fieldsData.fields.find((f) => f.name === 'Status')\n\t\tif (!statusField) {\n\t\t\tlogger.debug('No Status field found in project', { projectNumber: project.number })\n\t\t\treturn\n\t\t}\n\n\t\tconst inProgressOption = statusField.options?.find(\n\t\t\t(o: { id: string; name: string }) => o.name === 'In Progress' || o.name === 'In progress'\n\t\t)\n\n\t\tif (!inProgressOption) {\n\t\t\tlogger.debug('No In Progress option found in Status field', { projectNumber: project.number })\n\t\t\treturn\n\t\t}\n\n\t\t// Update status\n\t\ttry {\n\t\t\tawait updateProjectItemField(\n\t\t\t\titem.id,\n\t\t\t\tproject.id,\n\t\t\t\tstatusField.id,\n\t\t\t\tinProgressOption.id\n\t\t\t)\n\n\t\t\tlogger.info('Updated issue status in project', {\n\t\t\t\tissueNumber,\n\t\t\t\tprojectNumber: project.number,\n\t\t\t})\n\t\t} catch (error) {\n\t\t\tlogger.debug('Could not update project item', { item: item.id, error })\n\t\t}\n\t}\n\n\t// Utility methods\n\tpublic extractContext(entity: Issue | PullRequest): string {\n\t\tif ('branch' in entity) {\n\t\t\t// It's a PullRequest\n\t\t\treturn `Pull Request #${entity.number}: ${entity.title}\\nBranch: ${entity.branch}\\nState: ${entity.state}`\n\t\t} else {\n\t\t\t// It's an Issue\n\t\t\treturn `GitHub Issue #${entity.number}: ${entity.title}\\nState: ${entity.state}`\n\t\t}\n\t}\n\n\tprivate mapGitHubIssueToIssue(ghIssue: GitHubIssue): Issue {\n\t\treturn {\n\t\t\tnumber: ghIssue.number,\n\t\t\ttitle: ghIssue.title,\n\t\t\tbody: ghIssue.body,\n\t\t\tstate: ghIssue.state.toLowerCase() as 'open' | 'closed',\n\t\t\tlabels: ghIssue.labels.map((l) => l.name),\n\t\t\tassignees: ghIssue.assignees.map((a) => a.login),\n\t\t\turl: ghIssue.url,\n\t\t}\n\t}\n\n\tprivate mapGitHubPRToPullRequest(ghPR: GitHubPullRequest): PullRequest {\n\t\treturn {\n\t\t\tnumber: ghPR.number,\n\t\t\ttitle: ghPR.title,\n\t\t\tbody: ghPR.body,\n\t\t\tstate: ghPR.state.toLowerCase() as 'open' | 'closed' | 'merged',\n\t\t\tbranch: ghPR.headRefName,\n\t\t\tbaseBranch: ghPR.baseRefName,\n\t\t\turl: ghPR.url,\n\t\t\tisDraft: ghPR.isDraft,\n\t\t}\n\t}\n\n\tprivate async promptUserConfirmation(message: string): Promise<boolean> {\n\t\treturn 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package/dist/chunk-IP7SMKIF.js.map

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-{"version":3,"sources":["../src/utils/env.ts","../src/utils/IdentifierParser.ts"],"sourcesContent":["import dotenvFlow, { type DotenvFlowConfigOptions } from 'dotenv-flow'\nimport { logger } from './logger.js'\n\n/**\n * Parse .env file content into key-value map\n * Handles comments, empty lines, quoted/unquoted values, multiline values\n */\nexport function parseEnvFile(content: string): Map<string, string> {\n  const envMap = new Map<string, string>()\n  const lines = content.split('\\n')\n\n  for (const line of lines) {\n    const trimmedLine = line.trim()\n\n    // Skip empty lines and comments\n    if (!trimmedLine || trimmedLine.startsWith('#')) {\n      continue\n    }\n\n    // Remove 'export ' prefix if present\n    const cleanLine = trimmedLine.startsWith('export ')\n      ? trimmedLine.substring(7)\n      : trimmedLine\n\n    // Find the first equals sign\n    const equalsIndex = cleanLine.indexOf('=')\n    if (equalsIndex === -1) {\n      continue\n    }\n\n    const key = cleanLine.substring(0, equalsIndex).trim()\n    let value = cleanLine.substring(equalsIndex + 1)\n\n    // Handle quoted values\n    if (\n      (value.startsWith('\"') && value.endsWith('\"')) ||\n      (value.startsWith(\"'\") && value.endsWith(\"'\"))\n    ) {\n      value = value.substring(1, value.length - 1)\n      // Unescape quotes\n      value = value.replace(/\\\\\"/g, '\"').replace(/\\\\'/g, \"'\")\n      // Unescape newlines\n      value = value.replace(/\\\\n/g, '\\n')\n    }\n\n    if (key) {\n      envMap.set(key, value)\n    }\n  }\n\n  return envMap\n}\n\n/**\n * Format environment variable as line for .env file\n * Always quotes values and escapes internal quotes\n */\nexport function formatEnvLine(key: string, value: string): string {\n  // Escape quotes and newlines in the value\n  const escapedValue = value\n    .replace(/\"/g, '\\\\\"')\n    .replace(/\\n/g, '\\\\n')\n    .replace(/\\r/g, '\\\\r')\n\n  return `${key}=\"${escapedValue}\"`\n}\n\n/**\n * Validate environment variable name and value\n */\nexport function validateEnvVariable(\n  key: string,\n  _value?: string\n): { valid: boolean; error?: string } {\n  if (!key || key.length === 0) {\n    return {\n      valid: false,\n      error: 'Environment variable key cannot be empty',\n    }\n  }\n\n  if (!isValidEnvKey(key)) {\n    return {\n      valid: false,\n      error: `Invalid environment variable name: ${key}. Must start with a letter or underscore and contain only letters, numbers, and underscores.`,\n    }\n  }\n\n  // Values can be any string, including empty\n  return { valid: true }\n}\n\n/**\n * Normalize line endings for cross-platform compatibility\n */\nexport function normalizeLineEndings(content: string): string {\n  return content.replace(/\\r\\n/g, '\\n').replace(/\\r/g, '\\n')\n}\n\n/**\n * Extract port from .env file if present\n */\nexport function extractPort(envContent: Map<string, string>): number | null {\n  const portValue = envContent.get('PORT')\n  if (!portValue) {\n    return null\n  }\n\n  const port = parseInt(portValue, 10)\n  if (isNaN(port)) {\n    return null\n  }\n\n  return port\n}\n\n/**\n * Check if environment variable key is valid\n */\nexport function isValidEnvKey(key: string): boolean {\n  if (!key || key.length === 0) {\n    return false\n  }\n\n  // Must start with letter or underscore, followed by letters, numbers, or underscores\n  const validKeyRegex = /^[A-Za-z_][A-Za-z0-9_]*$/\n  return validKeyRegex.test(key)\n}\n\n/**\n * Load environment variables using dotenv-flow\n * Supports environment-specific files (.env.development, .env.production, etc.)\n * and local overrides (.env.local, .env.development.local)\n */\nexport function loadEnvIntoProcess(options?: {\n  path?: string\n  nodeEnv?: string\n  defaultNodeEnv?: string\n}): { parsed?: Record<string, string>; error?: Error } {\n  logger.debug('Loading environment variables with dotenv-flow', {\n    options: {\n      path: options?.path ?? 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package/dist/chunk-MAVL6PJF.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/utils/git.ts"],"sourcesContent":["import path from 'path'\nimport { execa, type ExecaError } from 'execa'\nimport { type GitWorktree } from '../types/worktree.js'\nimport type { SettingsManager } from '../lib/SettingsManager.js'\nimport { logger } from './logger.js'\n\n/**\n * Execute a Git command and return the stdout result\n * Throws an error if the command fails\n */\nexport async function executeGitCommand(\n  args: string[],\n  options?: { cwd?: string; timeout?: number; stdio?: 'inherit' | 'pipe' }\n): Promise<string> {\n  try {\n    const result = await execa('git', args, {\n      cwd: options?.cwd ?? process.cwd(),\n      timeout: options?.timeout ?? 30000,\n      encoding: 'utf8',\n      stdio: options?.stdio ?? 'pipe',\n      verbose: logger.isDebugEnabled(),\n    })\n\n    return result.stdout\n  } catch (error) {\n    const execaError = error as ExecaError\n    const stderr = execaError.stderr ?? execaError.message ?? 'Unknown Git error'\n    throw new Error(`Git command failed: ${stderr}`)\n  }\n}\n\n/**\n * Parse git worktree list output into structured data\n * @param output - The output from git worktree list --porcelain\n * @param defaultBranch - Default branch name to use for bare repositories (defaults to 'main')\n */\nexport function parseWorktreeList(output: string, defaultBranch?: string): GitWorktree[] {\n  const worktrees: GitWorktree[] = []\n  const lines = output.trim().split('\\n')\n\n  let i = 0\n  while (i < lines.length) {\n    const pathLine = lines[i]\n    if (!pathLine?.startsWith('worktree ')) {\n      i++\n      continue\n    }\n\n    // Parse path line: \"worktree /path/to/worktree\"\n    const pathMatch = pathLine.match(/^worktree (.+)$/)\n    if (!pathMatch) {\n      i++\n      continue\n    }\n\n    let branch = ''\n    let commit = ''\n    let detached = false\n    let bare = false\n    let locked = false\n    let lockReason: string | undefined\n\n    // Process subsequent lines for this worktree\n    i++\n    while (i < lines.length && !lines[i]?.startsWith('worktree ')) {\n      const line = lines[i]?.trim()\n      if (!line) {\n        i++\n        continue\n      }\n\n      if (line === 'bare') {\n        bare = true\n        branch = defaultBranch ?? 'main' // Default assumption for bare repo\n      } else if (line === 'detached') {\n        detached = true\n        branch = 'HEAD'\n      } else if (line.startsWith('locked')) {\n        locked = true\n        const lockMatch = line.match(/^locked (.+)$/)\n        lockReason = lockMatch?.[1]\n        branch = branch || 'unknown'\n      } else if (line.startsWith('HEAD ')) {\n        // Parse commit line: \"HEAD abc123def456...\"\n        const commitMatch = line.match(/^HEAD ([a-f0-9]+)/)\n        if (commitMatch) {\n          commit = commitMatch[1] ?? ''\n        }\n      } else if (line.startsWith('branch ')) {\n        // Parse branch line: \"branch refs/heads/feature-branch\"\n        const branchMatch = line.match(/^branch refs\\/heads\\/(.+)$/)\n        branch = branchMatch?.[1] ?? line.replace('branch ', '')\n      }\n\n      i++\n    }\n\n    const worktree: GitWorktree = {\n      path: pathMatch[1] ?? '',\n      branch,\n      commit,\n      bare,\n      detached,\n      locked,\n    }\n\n    if (lockReason !== undefined) {\n      worktree.lockReason = lockReason\n    }\n\n    worktrees.push(worktree)\n  }\n\n  return worktrees\n}\n\n/**\n * Check if a branch name follows PR naming patterns\n */\nexport function isPRBranch(branchName: string): boolean {\n  const prPatterns = [\n    /^pr\\/\\d+/i, // pr/123, pr/123-feature-name\n    /^pull\\/\\d+/i, // pull/123\n    /^\\d+[-_]/, // 123-feature-name, 123_feature_name\n    /^feature\\/pr[-_]?\\d+/i, // feature/pr123, feature/pr-123\n    /^hotfix\\/pr[-_]?\\d+/i, // hotfix/pr123\n  ]\n\n  return prPatterns.some(pattern => pattern.test(branchName))\n}\n\n/**\n * Extract PR number from branch name\n */\nexport function extractPRNumber(branchName: string): number | null {\n  const patterns = [\n    /^pr\\/(\\d+)/i, // pr/123\n    /^pull\\/(\\d+)/i, // pull/123\n    /^(\\d+)[-_]/, // 123-feature-name\n    /^feature\\/pr[-_]?(\\d+)/i, // feature/pr123\n    /^hotfix\\/pr[-_]?(\\d+)/i, // hotfix/pr123\n    /pr[-_]?(\\d+)/i, // anywhere with pr123 or pr-123\n  ]\n\n  for (const pattern of patterns) {\n    const match = branchName.match(pattern)\n    if (match?.[1]) {\n      const num = parseInt(match[1], 10)\n      if (!isNaN(num)) return num\n    }\n  }\n\n  return null\n}\n\n/**\n * Extract issue number from branch name\n * Supports both new format (issue-{issueId}__{slug}) and old format (issue-{number}-{slug})\n * @returns string issue ID (alphanumeric) or null if not found\n */\nexport function extractIssueNumber(branchName: string): string | null {\n  // Priority 1: New format - issue-{issueId}__ (alphanumeric ID with double underscore)\n  const newFormatPattern = /issue-([^_]+)__/i\n  const newMatch = branchName.match(newFormatPattern)\n  if (newMatch?.[1]) return newMatch[1]\n\n  // Priority 2: Old format - issue-{number}- or issue-{number}$ (numeric only, dash or end)\n  const oldFormatPattern = /issue-(\\d+)(?:-|$)/i\n  const oldMatch = branchName.match(oldFormatPattern)\n  if (oldMatch?.[1]) return oldMatch[1]\n\n  // Priority 3: Alphanumeric ID at end (either format without description)\n  const alphanumericEndPattern = /issue-([^_\\s/]+)$/i\n  const alphanumericMatch = branchName.match(alphanumericEndPattern)\n  if (alphanumericMatch?.[1]) return alphanumericMatch[1]\n\n  // Priority 4: Legacy patterns (issue_N, leading number)\n  const legacyPatterns = [\n    /issue_(\\d+)/i,     // issue_42\n    /^(\\d+)-/,          // 42-feature-name\n  ]\n  for (const pattern of legacyPatterns) {\n    const match = branchName.match(pattern)\n    if (match?.[1]) return match[1]\n  }\n\n  return null\n}\n\n/**\n * Check if a path follows worktree naming patterns\n */\nexport function isWorktreePath(path: string): boolean {\n  const worktreePatterns = [\n    /\\/worktrees?\\//i, // Contains /worktree/ or /worktrees/\n    /\\/workspace[-_]?\\d+/i, // workspace123, workspace-123\n    /\\/issue[-_]?\\d+/i, // issue123, issue-123\n    /\\/pr[-_]?\\d+/i, // pr123, pr-123\n    /-worktree$/i, // ends with -worktree\n    /\\.worktree$/i, // ends with .worktree\n  ]\n\n  return worktreePatterns.some(pattern => pattern.test(path))\n}\n\n/**\n * Generate a worktree path based on branch name and root directory\n * For PRs, adds _pr_<PR_NUM> suffix to distinguish from issue branches\n */\nexport function generateWorktreePath(\n  branchName: string,\n  rootDir: string = process.cwd(),\n  options?: { isPR?: boolean; prNumber?: number; prefix?: string }\n): string {\n  // Replace slashes with dashes (matches bash line 593)\n  let sanitized = branchName.replace(/\\//g, '-')\n\n  // Add PR suffix if this is a PR (matches bash lines 595-597)\n  if (options?.isPR && options?.prNumber) {\n    sanitized = `${sanitized}_pr_${options.prNumber}`\n  }\n\n  const parentDir = path.dirname(rootDir)\n\n  // Handle prefix logic\n  let prefix: string\n\n  if (options?.prefix === undefined) {\n    // No prefix in options - calculate default: <basename>-looms\n    const mainFolderName = path.basename(rootDir)\n    prefix = mainFolderName ? `${mainFolderName}-looms/` : 'looms/'\n  } else if (options.prefix === '') {\n    // Empty string = no prefix mode\n    prefix = ''\n  } else {\n    // Custom prefix provided\n    prefix = options.prefix\n\n    // Check if prefix contains forward slashes (nested directory structure)\n    const hasNestedPath = prefix.includes('/')\n\n    if (hasNestedPath) {\n      // Check if it ends with a separator character (dash, underscore, or slash)\n      const endsWithSeparator = /[-_/]$/.test(prefix)\n\n      if (!endsWithSeparator) {\n        // Has nested path but no trailing separator: auto-append hyphen\n        // Example: \"temp/looms\" becomes \"temp/looms-\"\n        prefix = `${prefix}-`\n      }\n      // If it already ends with -, _, or /, keep as-is\n    } else {\n      // Single-level prefix: auto-append separator if it doesn't end with one\n      const endsWithSeparator = /[-_]$/.test(prefix)\n      if (!endsWithSeparator) {\n        prefix = `${prefix}-`\n      }\n    }\n  }\n\n  // Apply prefix (or not, if empty)\n  if (prefix === '') {\n    return path.join(parentDir, sanitized)\n  } else if (prefix.endsWith('/')) {\n    // Forward slash = nested directory, use path.join for proper handling\n    return path.join(parentDir, prefix, sanitized)\n  } else if (prefix.includes('/')) {\n    // Contains slash but doesn't end with slash = nested with separator (e.g., \"looms/myprefix-\")\n    // Split and handle: last part is prefix with separator, rest is directory path\n    const lastSlashIndex = prefix.lastIndexOf('/')\n    const dirPath = prefix.substring(0, lastSlashIndex)\n    const prefixWithSeparator = prefix.substring(lastSlashIndex + 1)\n    return path.join(parentDir, dirPath, `${prefixWithSeparator}${sanitized}`)\n  } else {\n    // Dash/underscore separator = single directory name\n    return path.join(parentDir, `${prefix}${sanitized}`)\n  }\n}\n\n/**\n * Validate that a directory is a valid Git repository\n */\nexport async function isValidGitRepo(path: string): Promise<boolean> {\n  try {\n    await executeGitCommand(['rev-parse', '--git-dir'], { cwd: path })\n    return true\n  } catch {\n    return false\n  }\n}\n\n/**\n * Get the current branch name for a repository\n */\nexport async function getCurrentBranch(path: string = process.cwd()): Promise<string | null> {\n  try {\n    const result = await executeGitCommand(['branch', '--show-current'], { cwd: path })\n    return result.trim()\n  } catch {\n    return null\n  }\n}\n\n/**\n * Check if a branch exists (local or remote)\n */\nexport async function branchExists(\n  branchName: string,\n  path: string = process.cwd(),\n  includeRemote = true\n): Promise<boolean> {\n  try {\n    // Check local branches\n    const localResult = await executeGitCommand(['branch', '--list', branchName], { cwd: path })\n    if (localResult.trim()) {\n      return true\n    }\n\n    // Check remote branches if requested\n    if (includeRemote) {\n      const remoteResult = await executeGitCommand(['branch', '-r', '--list', `*/${branchName}`], {\n        cwd: path,\n      })\n      if (remoteResult.trim()) {\n        return true\n      }\n    }\n\n    return false\n  } catch {\n    return false\n  }\n}\n\n/**\n * Get repository root directory\n */\nexport async function getRepoRoot(path: string = process.cwd()): Promise<string | null> {\n  try {\n    const result = await executeGitCommand(['rev-parse', '--show-toplevel'], { cwd: path })\n    return result.trim()\n  } catch {\n    return null\n  }\n}\n\n/**\n * Find the worktree path where main branch is checked out\n * Copies bash script approach: parse git worktree list to find main\n */\nexport async function findMainWorktreePath(\n  path: string = process.cwd(),\n  options?: { mainBranch?: string }\n): Promise<string> {\n  try {\n    const output = await executeGitCommand(['worktree', 'list', '--porcelain'], { cwd: path })\n    const worktrees = parseWorktreeList(output, options?.mainBranch)\n\n    // Guard: empty worktree list\n    if (worktrees.length === 0) {\n      throw new Error('No worktrees found in repository')\n    }\n\n    // Tier 1: Check for specified mainBranch in options\n    if (options?.mainBranch) {\n      const specified = worktrees.find(wt => wt.branch === options.mainBranch)\n      if (!specified?.path) {\n        throw new Error(\n          `No worktree found with branch '${options.mainBranch}' (specified in settings). Available worktrees: ${worktrees.map(wt => `${wt.path} (${wt.branch})`).join(', ')}`\n        )\n      }\n      return specified.path\n    }\n\n    // Tier 2: Look for \"main\" branch\n    const mainBranch = worktrees.find(wt => wt.branch === 'main')\n    if (mainBranch?.path) {\n      return mainBranch.path\n    }\n\n    // Tier 3: Use first worktree (primary worktree)\n    const firstWorktree = worktrees[0]\n    if (!firstWorktree?.path) {\n      throw new Error('Failed to determine primary worktree path')\n    }\n    return firstWorktree.path\n  } catch (error) {\n    if (\n      error instanceof Error &&\n      (error.message.includes('No worktree found with branch') ||\n        error.message.includes('No worktrees found') ||\n        error.message.includes('Failed to determine primary worktree'))\n    ) {\n      // Re-throw our specific errors\n      throw error\n    }\n    throw new Error(`Failed to find main worktree: ${error instanceof Error ? error.message : String(error)}`)\n  }\n}\n\n/**\n * Find main worktree path with automatic settings loading\n *\n * This is a convenience wrapper that:\n * 1. Loads project settings from .iloom/settings.json\n * 2. Extracts mainBranch configuration if present\n * 3. 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Remove git status markers (* + spaces at start)\n    let cleanBranch = line.replace(/^[*+ ]+/, '')\n\n    // 2. Remove 'origin/' prefix if present\n    cleanBranch = cleanBranch.replace(/^origin\\//, '')\n\n    // 3. Remove 'remotes/origin/' prefix if present\n    cleanBranch = cleanBranch.replace(/^remotes\\/origin\\//, '')\n\n    // 4. 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\"issue-25\", \"feat-25\", etc.\n    const beforeNumber = cleanBranch.substring(0, cleanBranch.indexOf(String(issueNumber)))\n\n    if (beforeNumber) {\n      // Extract the last word (letters) before the number\n      const lastWord = beforeNumber.match(/([a-zA-Z]+)[-_/\\s]*$/)\n      if (lastWord?.[1]) {\n        const word = lastWord[1].toLowerCase()\n        // Known prefixes for issue-related branches\n        const knownPrefixes = [\n          'issue', 'issues',\n          'feat', 'feature', 'features',\n          'fix', 'fixes', 'bugfix', 'hotfix',\n          'pr', 'pull',\n          'test', 'tests',\n          'chore',\n          'docs',\n          'refactor',\n          'perf',\n          'style',\n          'ci',\n          'build',\n          'revert'\n        ]\n\n        // If we found a word and it's NOT in the known list, skip this branch\n        if (!knownPrefixes.includes(word)) {\n          continue\n        }\n      }\n    }\n\n    // Passed all checks - add to results\n    if (!branches.includes(cleanBranch)) {\n      branches.push(cleanBranch)\n    }\n  }\n\n  return branches\n}\n\n/**\n * Check if a repository is empty (has no commits yet)\n * @param path - Repository path to check (defaults to process.cwd())\n * @returns true if repository has no commits, false otherwise\n */\nexport async function isEmptyRepository(path: string = process.cwd()): Promise<boolean> {\n  try {\n    await executeGitCommand(['rev-parse', '--verify', 'HEAD'], { cwd: path })\n    return false // HEAD exists, repo has commits\n  } catch {\n    return true // HEAD doesn't exist, repo is empty\n  }\n}\n\n/**\n * Ensure repository has at least one commit\n * Creates an initial empty commit if repository is empty\n * @param path - Repository path (defaults to process.cwd())\n */\nexport async function ensureRepositoryHasCommits(path: string = process.cwd()): Promise<void> {\n  const isEmpty = await isEmptyRepository(path)\n  if (isEmpty) {\n    await executeGitCommand(['commit', '--no-verify', '--allow-empty', '-m', 'Initial commit'], { cwd: path })\n  }\n}\n\n/**\n * Push a branch to remote repository\n * Used for PR workflow to push changes to remote without merging locally\n *\n * @param branchName - The branch name to push\n * @param worktreePath - The worktree path where the branch is checked out\n * @param options - Push options\n * @throws Error if push fails\n */\nexport async function pushBranchToRemote(\n  branchName: string,\n  worktreePath: string,\n  options?: { dryRun?: boolean }\n): Promise<void> {\n  if (options?.dryRun) {\n    // In dry-run mode, just log what would be done\n    return\n  }\n\n  try {\n    // Execute: git push origin <branch-name>\n    // This matches the bash script behavior (merge-and-clean.sh line 359)\n    await executeGitCommand(['push', 'origin', branchName], {\n      cwd: worktreePath,\n      timeout: 120000, // 120 second timeout for push operations\n    })\n  } catch (error) {\n    // Provide helpful error message based on common push failures\n    const errorMessage = error instanceof Error ? error.message : String(error)\n\n    // Check for common error patterns\n    if (errorMessage.includes('failed to push') || errorMessage.includes('rejected')) {\n      throw new Error(\n        `Failed to push changes to origin/${branchName}\\n\\n` +\n        `   Possible causes:\\n` +\n        `   • Remote branch was deleted\\n` +\n        `   • Push was rejected (non-fast-forward)\\n` +\n        `   • Network connectivity issues\\n\\n` +\n        `   To retry: il finish --pr <number>\\n` +\n        `   To force push: git push origin ${branchName} --force`\n      )\n    }\n\n    if (errorMessage.includes('Could not resolve host') || errorMessage.includes('network')) {\n      throw new Error(\n        `Failed to push changes to origin/${branchName}: Network connectivity issues\\n\\n` +\n        `   Check your internet connection and try again.`\n      )\n    }\n\n    if (errorMessage.includes('No such remote')) {\n      throw new Error(\n        `Failed to push changes: Remote 'origin' not found\\n\\n` +\n        `   Configure remote: git remote add origin <url>`\n      )\n    }\n\n    // For other errors, re-throw with original message\n    throw new Error(`Failed to push to remote: ${errorMessage}`)\n  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package/dist/chunk-ML3NRPNB.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/lib/SettingsManager.ts"],"sourcesContent":["import { readFile } from 'fs/promises'\nimport path from 'path'\nimport os from 'os'\nimport { z } from 'zod'\nimport deepmerge from 'deepmerge'\nimport { logger } from '../utils/logger.js'\n\n/**\n * Zod schema for agent settings\n */\nexport const AgentSettingsSchema = z.object({\n\tmodel: z\n\t\t.enum(['sonnet', 'opus', 'haiku'])\n\t\t.optional()\n\t\t.describe('Claude model shorthand: sonnet, opus, or haiku'),\n\t// Future: could add other per-agent overrides\n})\n\n/**\n * Zod schema for workflow permission configuration\n */\nexport const WorkflowPermissionSchema = z.object({\n\tpermissionMode: z\n\t\t.enum(['plan', 'acceptEdits', 'bypassPermissions', 'default'])\n\t\t.optional()\n\t\t.describe('Permission mode for Claude CLI in this workflow type'),\n\tnoVerify: z\n\t\t.boolean()\n\t\t.optional()\n\t\t.describe('Skip pre-commit hooks (--no-verify) when committing during finish workflow'),\n\tstartIde: 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z\n\t.object({\n\t\tissue: WorkflowPermissionSchemaNoDefaults.optional(),\n\t\tpr: WorkflowPermissionSchemaNoDefaults.optional(),\n\t\tregular: WorkflowPermissionSchemaNoDefaults.optional(),\n\t})\n\t.optional()\n\n/**\n * Zod schema for capabilities settings\n */\nexport const CapabilitiesSettingsSchema = z\n\t.object({\n\t\tweb: z\n\t\t\t.object({\n\t\t\t\tbasePort: z\n\t\t\t\t\t.number()\n\t\t\t\t\t.min(1, 'Base port must be >= 1')\n\t\t\t\t\t.max(65535, 'Base port must be <= 65535')\n\t\t\t\t\t.optional()\n\t\t\t\t\t.describe('Base port for web workspace port calculations (default: 3000)'),\n\t\t\t})\n\t\t\t.optional(),\n\t\tdatabase: z\n\t\t\t.object({\n\t\t\t\tdatabaseUrlEnvVarName: z\n\t\t\t\t\t.string()\n\t\t\t\t\t.min(1, 'Database URL variable name cannot be empty')\n\t\t\t\t\t.regex(/^[A-Z_][A-Z0-9_]*$/, 'Must be valid env var name (uppercase, underscores)')\n\t\t\t\t\t.optional()\n\t\t\t\t\t.default('DATABASE_URL')\n\t\t\t\t\t.describe('Name of environment variable for database connection URL'),\n\t\t\t})\n\t\t\t.optional(),\n\t})\n\t.optional()\n\n/**\n * Non-defaulting variant for pre-merge validation\n */\nexport const CapabilitiesSettingsSchemaNoDefaults = z\n\t.object({\n\t\tweb: z\n\t\t\t.object({\n\t\t\t\tbasePort: z\n\t\t\t\t\t.number()\n\t\t\t\t\t.min(1, 'Base port must be >= 1')\n\t\t\t\t\t.max(65535, 'Base port must be <= 65535')\n\t\t\t\t\t.optional()\n\t\t\t\t\t.describe('Base port for web workspace port calculations (default: 3000)'),\n\t\t\t})\n\t\t\t.optional(),\n\t\tdatabase: z\n\t\t\t.object({\n\t\t\t\tdatabaseUrlEnvVarName: z\n\t\t\t\t\t.string()\n\t\t\t\t\t.min(1, 'Database URL variable name cannot be empty')\n\t\t\t\t\t.regex(/^[A-Z_][A-Z0-9_]*$/, 'Must be valid env var name (uppercase, underscores)')\n\t\t\t\t\t.optional()\n\t\t\t\t\t.describe('Name of environment variable for database connection URL'),\n\t\t\t})\n\t\t\t.optional(),\n\t})\n\t.optional()\n\n/**\n * Zod schema for Neon database provider settings\n */\nexport const NeonSettingsSchema = z.object({\n\tprojectId: z\n\t\t.string()\n\t\t.min(1)\n\t\t.regex(/^[a-zA-Z0-9-]+$/, 'Neon project ID must contain only letters, numbers, and hyphens')\n\t\t.describe('Neon project ID found in your project URL (e.g., \"fantastic-fox-3566354\")'),\n\tparentBranch: z\n\t\t.string()\n\t\t.min(1)\n\t\t.describe('Branch from which new database branches are created'),\n})\n\n/**\n * Zod schema for database provider settings\n */\nexport const DatabaseProvidersSettingsSchema = z\n\t.object({\n\t\tneon: NeonSettingsSchema.optional().describe(\n\t\t\t'Neon database configuration. Requires Neon CLI installed and authenticated for database branching.',\n\t\t),\n\t})\n\t.optional()\n\n/**\n * Zod schema for iloom settings\n */\nexport const IloomSettingsSchema = z.object({\n\tmainBranch: z\n\t\t.string()\n\t\t.min(1, \"Settings 'mainBranch' cannot be empty\")\n\t\t.optional()\n\t\t.describe('Name of the main/primary branch for the repository'),\n\tsourceEnvOnStart: z\n\t\t.boolean()\n\t\t.default(false)\n\t\t.describe(\n\t\t\t'Source .env file when launching terminal processes (Claude, dev server, terminal). ' +\n\t\t\t\t'NOTE TO AI AGENTS: Before making changes to settings files, YOU MUST OFFER to check  .env compatibility. ' +\n\t\t\t\t'WARNING: Unquoted values in .env files may break sourcing in bash/zsh shells. ' +\n\t\t\t\t'Before enabling, verify your .env file does not contain unquoted special characters ' +\n\t\t\t\t'(e.g., database URLs with ?, &, or other shell metacharacters). ' +\n\t\t\t\t'Shell compatibility issues may cause processes to fail or behave unexpectedly.',\n\t\t),\n\tworktreePrefix: z\n\t\t.string()\n\t\t.optional()\n\t\t.refine(\n\t\t\t(val) => {\n\t\t\t\tif (val === undefined) return true // undefined = use default calculation\n\t\t\t\tif (val === '') return true // empty string = no prefix mode\n\n\t\t\t\t// Allowlist: only alphanumeric, hyphens, underscores, and forward slashes\n\t\t\t\tconst allowedChars = /^[a-zA-Z0-9\\-_/]+$/\n\t\t\t\tif (!allowedChars.test(val)) return false\n\n\t\t\t\t// Reject if only special characters (no alphanumeric content)\n\t\t\t\tif (/^[-_/]+$/.test(val)) return false\n\n\t\t\t\t// Check each segment (split by /) contains at least one alphanumeric character\n\t\t\t\tconst segments = val.split('/')\n\t\t\t\tfor (const segment of segments) {\n\t\t\t\t\tif (segment && /^[-_]+$/.test(segment)) {\n\t\t\t\t\t\t// Segment exists but contains only hyphens/underscores\n\t\t\t\t\t\treturn false\n\t\t\t\t\t}\n\t\t\t\t}\n\n\t\t\t\treturn true\n\t\t\t},\n\t\t\t{\n\t\t\t\tmessage:\n\t\t\t\t\t\"worktreePrefix contains invalid characters. Only alphanumeric characters, hyphens (-), underscores (_), and forward slashes (/) are allowed. Use forward slashes for nested directories.\",\n\t\t\t},\n\t\t)\n\t\t.describe(\n\t\t\t'Prefix for worktree directories. Empty string disables prefix. Defaults to <repo-name>-looms if not set.',\n\t\t),\n\tprotectedBranches: z\n\t\t.array(z.string().min(1, 'Protected branch name cannot be empty'))\n\t\t.optional()\n\t\t.describe('List of branches that cannot be deleted (defaults to [mainBranch, \"main\", \"master\", \"develop\"])'),\n\tworkflows: WorkflowsSettingsSchema.describe('Per-workflow-type permission configurations'),\n\tagents: z\n\t\t.record(z.string(), AgentSettingsSchema)\n\t\t.optional()\n\t\t.nullable()\n\t\t.describe(\n\t\t\t'Per-agent configuration overrides. Available agents: ' +\n\t\t\t\t'iloom-issue-analyzer (analyzes issues), ' +\n\t\t\t\t'iloom-issue-planner (creates implementation plans), ' +\n\t\t\t\t'iloom-issue-analyze-and-plan (combined analysis and planning), ' +\n\t\t\t\t'iloom-issue-complexity-evaluator (evaluates complexity), ' +\n\t\t\t\t'iloom-issue-enhancer (enhances issue descriptions), ' +\n\t\t\t\t'iloom-issue-implementer (implements code changes), ' +\n\t\t\t\t'iloom-issue-reviewer (reviews code changes against requirements)',\n\t\t),\n\tcapabilities: CapabilitiesSettingsSchema.describe('Project capability configurations'),\n\tdatabaseProviders: DatabaseProvidersSettingsSchema.describe('Database provider configurations'),\n\tissueManagement: z\n\t\t.object({\n\t\t\tprovider: z.enum(['github', 'linear']).optional().default('github').describe('Issue tracker provider (github, linear)'),\n\t\t\tgithub: z\n\t\t\t\t.object({\n\t\t\t\t\tremote: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.min(1, 'Remote name cannot be empty')\n\t\t\t\t\t\t.describe('Git remote name to use for GitHub operations'),\n\t\t\t\t})\n\t\t\t\t.optional(),\n\t\t\tlinear: z\n\t\t\t\t.object({\n\t\t\t\t\tteamId: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.min(1, 'Team ID cannot be empty')\n\t\t\t\t\t\t.describe('Linear team identifier (e.g., \"ENG\", \"PLAT\")'),\n\t\t\t\t\tbranchFormat: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.optional()\n\t\t\t\t\t\t.describe('Branch naming template for Linear issues'),\n\t\t\t\t\tapiToken: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.optional()\n\t\t\t\t\t\t.describe('Linear API token (lin_api_...). SECURITY: Store in settings.local.json only, never commit to source control.'),\n\t\t\t\t})\n\t\t\t\t.optional(),\n\t\t})\n\t\t.optional()\n\t\t.describe('Issue management configuration'),\n\tmergeBehavior: z\n\t\t.object({\n\t\t\tmode: z.enum(['local', 'github-pr']).default('local'),\n\t\t\tremote: z.string().optional(),\n\t\t})\n\t\t.optional()\n\t\t.describe('Merge behavior configuration: local (merge locally) or github-pr (create PR)'),\n\tide: z\n\t\t.object({\n\t\t\ttype: z\n\t\t\t\t.enum(['vscode', 'cursor', 'webstorm', 'sublime', 'intellij', 'windsurf'])\n\t\t\t\t.default('vscode')\n\t\t\t\t.describe(\n\t\t\t\t\t'IDE to launch when starting a loom. Options: vscode (Visual Studio Code), cursor (Cursor AI editor), ' +\n\t\t\t\t\t\t'webstorm (JetBrains WebStorm), sublime (Sublime Text), intellij (JetBrains IntelliJ IDEA), ' +\n\t\t\t\t\t\t'windsurf (Windsurf editor).'\n\t\t\t\t),\n\t\t})\n\t\t.optional()\n\t\t.describe(\n\t\t\t'IDE configuration for workspace launches. Controls which editor opens when you start a loom. ' +\n\t\t\t\t'Supports VSCode, Cursor, WebStorm, Sublime Text, IntelliJ, and Windsurf. ' +\n\t\t\t\t'Note: Color synchronization (title bar colors) only works with VSCode-compatible editors (vscode, cursor, windsurf).'\n\t\t),\n})\n\n/**\n * Non-defaulting variant for pre-merge validation\n * This prevents Zod from polluting partial settings with default values before merge\n */\nexport const IloomSettingsSchemaNoDefaults = z.object({\n\tmainBranch: z\n\t\t.string()\n\t\t.min(1, \"Settings 'mainBranch' cannot be empty\")\n\t\t.optional()\n\t\t.describe('Name of the main/primary branch for the repository'),\n\tsourceEnvOnStart: z\n\t\t.boolean()\n\t\t.optional()\n\t\t.describe(\n\t\t\t'Source .env file when launching terminal processes (Claude, dev server, terminal). ' +\n\t\t\t\t'NOTE TO AI AGENTS: Before making changes to settings files, YOU MUST OFFER to check  .env compatibility. ' +\n\t\t\t\t'WARNING: Unquoted values in .env files may break sourcing in bash/zsh shells. ' +\n\t\t\t\t'Before enabling, verify your .env file does not contain unquoted special characters ' +\n\t\t\t\t'(e.g., database URLs with ?, &, or other shell metacharacters). ' +\n\t\t\t\t'Shell compatibility issues may cause processes to fail or behave unexpectedly.',\n\t\t),\n\tworktreePrefix: z\n\t\t.string()\n\t\t.optional()\n\t\t.refine(\n\t\t\t(val) => {\n\t\t\t\tif (val === undefined) return true // undefined = use default calculation\n\t\t\t\tif (val === '') return true // empty string = no prefix mode\n\n\t\t\t\t// Allowlist: only alphanumeric, hyphens, underscores, and forward slashes\n\t\t\t\tconst allowedChars = /^[a-zA-Z0-9\\-_/]+$/\n\t\t\t\tif (!allowedChars.test(val)) return false\n\n\t\t\t\t// Reject if only special characters (no alphanumeric content)\n\t\t\t\tif (/^[-_/]+$/.test(val)) return false\n\n\t\t\t\t// Check each segment (split by /) contains at least one alphanumeric character\n\t\t\t\tconst segments = val.split('/')\n\t\t\t\tfor (const segment of segments) {\n\t\t\t\t\tif (segment && /^[-_]+$/.test(segment)) {\n\t\t\t\t\t\t// Segment exists but contains only hyphens/underscores\n\t\t\t\t\t\treturn false\n\t\t\t\t\t}\n\t\t\t\t}\n\n\t\t\t\treturn true\n\t\t\t},\n\t\t\t{\n\t\t\t\tmessage:\n\t\t\t\t\t\"worktreePrefix contains invalid characters. Only alphanumeric characters, hyphens (-), underscores (_), and forward slashes (/) are allowed. Use forward slashes for nested directories.\",\n\t\t\t},\n\t\t)\n\t\t.describe(\n\t\t\t'Prefix for worktree directories. Empty string disables prefix. Defaults to <repo-name>-looms if not set.',\n\t\t),\n\tprotectedBranches: z\n\t\t.array(z.string().min(1, 'Protected branch name cannot be empty'))\n\t\t.optional()\n\t\t.describe('List of branches that cannot be deleted (defaults to [mainBranch, \"main\", \"master\", \"develop\"])'),\n\tworkflows: WorkflowsSettingsSchemaNoDefaults.describe('Per-workflow-type permission configurations'),\n\tagents: z\n\t\t.record(z.string(), AgentSettingsSchema)\n\t\t.optional()\n\t\t.nullable()\n\t\t.describe(\n\t\t\t'Per-agent configuration overrides. Available agents: ' +\n\t\t\t\t'iloom-issue-analyzer (analyzes issues), ' +\n\t\t\t\t'iloom-issue-planner (creates implementation plans), ' +\n\t\t\t\t'iloom-issue-analyze-and-plan (combined analysis and planning), ' +\n\t\t\t\t'iloom-issue-complexity-evaluator (evaluates complexity), ' +\n\t\t\t\t'iloom-issue-enhancer (enhances issue descriptions), ' +\n\t\t\t\t'iloom-issue-implementer (implements code changes), ' +\n\t\t\t\t'iloom-issue-reviewer (reviews code changes against requirements)',\n\t\t),\n\tcapabilities: CapabilitiesSettingsSchemaNoDefaults.describe('Project capability configurations'),\n\tdatabaseProviders: DatabaseProvidersSettingsSchema.describe('Database provider configurations'),\n\tissueManagement: z\n\t\t.object({\n\t\t\tprovider: z.enum(['github', 'linear']).optional().describe('Issue tracker provider (github, linear)'),\n\t\t\tgithub: z\n\t\t\t\t.object({\n\t\t\t\t\tremote: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.min(1, 'Remote name cannot be empty')\n\t\t\t\t\t\t.describe('Git remote name to use for GitHub operations'),\n\t\t\t\t})\n\t\t\t\t.optional(),\n\t\t\tlinear: z\n\t\t\t\t.object({\n\t\t\t\t\tteamId: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.min(1, 'Team ID cannot be empty')\n\t\t\t\t\t\t.describe('Linear team identifier (e.g., \"ENG\", \"PLAT\")'),\n\t\t\t\t\tbranchFormat: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.optional()\n\t\t\t\t\t\t.describe('Branch naming template for Linear issues'),\n\t\t\t\t\tapiToken: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.optional()\n\t\t\t\t\t\t.describe('Linear API token (lin_api_...). SECURITY: Store in settings.local.json only, never commit to source control.'),\n\t\t\t\t})\n\t\t\t\t.optional(),\n\t\t})\n\t\t.optional()\n\t\t.describe('Issue management configuration'),\n\tmergeBehavior: z\n\t\t.object({\n\t\t\tmode: z.enum(['local', 'github-pr']).optional(),\n\t\t\tremote: z.string().optional(),\n\t\t})\n\t\t.optional()\n\t\t.describe('Merge behavior configuration: local (merge locally) or github-pr (create PR)'),\n\tide: z\n\t\t.object({\n\t\t\ttype: z\n\t\t\t\t.enum(['vscode', 'cursor', 'webstorm', 'sublime', 'intellij', 'windsurf'])\n\t\t\t\t.optional()\n\t\t\t\t.describe(\n\t\t\t\t\t'IDE to launch when starting a loom. Options: vscode (Visual Studio Code), cursor (Cursor AI editor), ' +\n\t\t\t\t\t\t'webstorm (JetBrains WebStorm), sublime (Sublime Text), intellij (JetBrains IntelliJ IDEA), ' +\n\t\t\t\t\t\t'windsurf (Windsurf editor).'\n\t\t\t\t),\n\t\t})\n\t\t.optional()\n\t\t.describe(\n\t\t\t'IDE configuration for workspace launches. Controls which editor opens when you start a loom. ' +\n\t\t\t\t'Supports VSCode, Cursor, WebStorm, Sublime Text, IntelliJ, and Windsurf. ' +\n\t\t\t\t'Note: Color synchronization (title bar colors) only works with VSCode-compatible editors (vscode, cursor, windsurf).'\n\t\t),\n})\n\n/**\n * TypeScript type for Neon settings derived from Zod schema\n */\nexport type NeonSettings = z.infer<typeof NeonSettingsSchema>\n\n/**\n * TypeScript type for database providers settings derived from Zod schema\n */\nexport type DatabaseProvidersSettings = z.infer<typeof DatabaseProvidersSettingsSchema>\n\n/**\n * TypeScript type for agent settings derived from Zod schema\n */\nexport type AgentSettings = z.infer<typeof AgentSettingsSchema>\n\n/**\n * TypeScript type for workflow permission configuration derived from Zod schema\n */\nexport type WorkflowPermission = z.infer<typeof WorkflowPermissionSchema>\n\n/**\n * TypeScript type for workflows settings derived from Zod schema\n */\nexport type WorkflowsSettings = z.infer<typeof WorkflowsSettingsSchema>\n\n/**\n * TypeScript type for capabilities settings derived from Zod schema\n */\nexport type CapabilitiesSettings = z.infer<typeof CapabilitiesSettingsSchema>\n\n/**\n * TypeScript type for IDE settings derived from Zod schema\n */\nexport type IdeSettings = z.infer<typeof IloomSettingsSchema>['ide']\n\n/**\n * TypeScript type for iloom settings derived from Zod schema\n */\nexport type IloomSettings = z.infer<typeof IloomSettingsSchema>\n\n/**\n * Manages project-level settings from .iloom/settings.json\n */\nexport class SettingsManager {\n\t/**\n\t * Load settings from global, project, and local sources with proper precedence\n\t * Merge hierarchy (lowest to highest priority):\n\t * 1. Global settings (~/.config/iloom-ai/settings.json)\n\t * 2. Project settings (<PROJECT_ROOT>/.iloom/settings.json)\n\t * 3. Local settings (<PROJECT_ROOT>/.iloom/settings.local.json)\n\t * 4. CLI overrides (--set flags)\n\t * Returns empty object if all files don't exist (not an error)\n\t */\n\tasync loadSettings(\n\t\tprojectRoot?: string,\n\t\tcliOverrides?: Partial<IloomSettings>,\n\t): Promise<IloomSettings> {\n\t\tconst root = this.getProjectRoot(projectRoot)\n\n\t\t// Load global settings (lowest priority)\n\t\tconst globalSettings = await this.loadGlobalSettingsFile()\n\t\tconst globalSettingsPath = this.getGlobalSettingsPath()\n\t\tlogger.debug(`🌍 Global settings from ${globalSettingsPath}:`, JSON.stringify(globalSettings, null, 2))\n\n\t\t// Load base settings from settings.json\n\t\tconst baseSettings = await this.loadSettingsFile(root, 'settings.json')\n\t\tconst baseSettingsPath = path.join(root, '.iloom', 'settings.json')\n\t\tlogger.debug(`📄 Base settings from ${baseSettingsPath}:`, JSON.stringify(baseSettings, null, 2))\n\n\t\t// Load local overrides from settings.local.json\n\t\tconst localSettings = await this.loadSettingsFile(root, 'settings.local.json')\n\t\tconst localSettingsPath = path.join(root, '.iloom', 'settings.local.json')\n\t\tlogger.debug(`📄 Local settings from ${localSettingsPath}:`, JSON.stringify(localSettings, null, 2))\n\n\t\t// Deep merge with priority: cliOverrides > localSettings > baseSettings > globalSettings\n\t\tlet merged = this.mergeSettings(this.mergeSettings(globalSettings, baseSettings), localSettings)\n\t\tlogger.debug('🔄 After merging global + base + local settings:', JSON.stringify(merged, null, 2))\n\n\t\tif (cliOverrides && Object.keys(cliOverrides).length > 0) {\n\t\t\tlogger.debug('⚙️ CLI overrides to apply:', JSON.stringify(cliOverrides, null, 2))\n\t\t\tmerged = this.mergeSettings(merged, cliOverrides)\n\t\t\tlogger.debug('🔄 After applying CLI overrides:', JSON.stringify(merged, null, 2))\n\t\t}\n\n\t\t// Validate merged result\n\t\ttry {\n\t\t\tconst finalSettings = IloomSettingsSchema.parse(merged)\n\n\t\t\t// Debug: Log final merged configuration\n\t\t\tthis.logFinalConfiguration(finalSettings)\n\n\t\t\treturn finalSettings\n\t\t} catch (error) {\n\t\t\t// Show all Zod validation errors\n\t\t\tif (error instanceof z.ZodError) {\n\t\t\t\tconst errorMsg = this.formatAllZodErrors(error, '<merged settings>')\n\t\t\t\t// Enhance error message if CLI overrides were applied\n\t\t\t\tif (cliOverrides && Object.keys(cliOverrides).length > 0) {\n\t\t\t\t\tthrow new Error(`${errorMsg.message}\\n\\nNote: CLI overrides were applied. Check your --set arguments.`)\n\t\t\t\t}\n\t\t\t\tthrow errorMsg\n\t\t\t}\n\t\t\tthrow error\n\t\t}\n\t}\n\n\t/**\n\t * Log the final merged configuration for debugging\n\t */\n\tprivate logFinalConfiguration(settings: IloomSettings): void {\n\t\tlogger.debug('📋 Final merged configuration:', JSON.stringify(settings, null, 2))\n\t}\n\n\t/**\n\t * Load and parse a single settings file\n\t * Returns empty object if file doesn't exist (not an error)\n\t * Uses non-defaulting schema to prevent polluting partial settings with defaults before merge\n\t */\n\tprivate async loadSettingsFile(\n\t\tprojectRoot: string,\n\t\tfilename: string,\n\t): Promise<z.infer<typeof IloomSettingsSchemaNoDefaults>> {\n\t\tconst settingsPath = path.join(projectRoot, '.iloom', filename)\n\n\t\ttry {\n\t\t\tconst content = await readFile(settingsPath, 'utf-8')\n\t\t\tlet parsed: unknown\n\n\t\t\ttry {\n\t\t\t\tparsed = JSON.parse(content)\n\t\t\t} catch (error) {\n\t\t\t\tthrow new Error(\n\t\t\t\t\t`Failed to parse settings file at ${settingsPath}: ${error instanceof Error ? error.message : 'Invalid JSON'}`,\n\t\t\t\t)\n\t\t\t}\n\n\t\t\t// Basic type checking - ensure it's an object, but don't validate schema completeness\n\t\t\t// Individual files may be incomplete (e.g., Linear config split between files)\n\t\t\t// Final validation will happen on the merged result in loadSettings()\n\t\t\tif (typeof parsed !== 'object' || parsed === null || Array.isArray(parsed)) {\n\t\t\t\tthrow new Error(\n\t\t\t\t\t`Settings validation failed at ${filename}:\\n  - root: Expected object, received ${typeof parsed}`\n\t\t\t\t)\n\t\t\t}\n\t\t\treturn parsed as z.infer<typeof IloomSettingsSchemaNoDefaults>\n\t\t} catch (error) {\n\t\t\t// File not found is not an error - return empty settings\n\t\t\tif ((error as { code?: string }).code === 'ENOENT') {\n\t\t\t\tlogger.debug(`No settings file found at ${settingsPath}, using defaults`)\n\t\t\t\treturn {}\n\t\t\t}\n\n\t\t\t// Re-throw parsing errors\n\t\t\tthrow error\n\t\t}\n\t}\n\n\t/**\n\t * Deep merge two settings objects with priority to override\n\t * Uses deepmerge library with array replacement strategy\n\t */\n\tprivate mergeSettings(\n\t\tbase: Partial<IloomSettings> | z.infer<typeof IloomSettingsSchemaNoDefaults>,\n\t\toverride: Partial<IloomSettings> | z.infer<typeof IloomSettingsSchemaNoDefaults>,\n\t): IloomSettings {\n\t\t// Use deepmerge with array replacement (not concatenation)\n\t\t// Type assertion is safe because the merged result will be validated with IloomSettingsSchema\n\t\t// which applies all the defaults after merging\n\t\treturn deepmerge(base as Record<string, unknown>, override as Record<string, unknown>, {\n\t\t\t// Replace arrays instead of concatenating them\n\t\t\tarrayMerge: (_destinationArray, sourceArray) => sourceArray,\n\t\t}) as IloomSettings\n\t}\n\n\t/**\n\t * Format all Zod validation errors into a single error message\n\t */\n\tprivate formatAllZodErrors(error: z.ZodError, settingsPath: string): Error {\n\t\tconst errorMessages = error.issues.map(issue => {\n\t\t\tconst path = issue.path.length > 0 ? 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Ignoring global settings.`,\n\t\t\t\t)\n\t\t\t\treturn {}\n\t\t\t}\n\n\t\t\t// Validate with non-defaulting schema\n\t\t\ttry {\n\t\t\t\tconst validated = IloomSettingsSchemaNoDefaults.strict().parse(parsed)\n\t\t\t\treturn validated\n\t\t\t} catch (error) {\n\t\t\t\tif (error instanceof z.ZodError) {\n\t\t\t\t\tconst errorMsg = this.formatAllZodErrors(error, 'global settings')\n\t\t\t\t\tlogger.warn(`${errorMsg.message}. Ignoring global settings.`)\n\t\t\t\t} else {\n\t\t\t\t\tlogger.warn(`Validation error in global settings: ${error instanceof Error ? error.message : 'Unknown error'}. Ignoring global settings.`)\n\t\t\t\t}\n\t\t\t\treturn {}\n\t\t\t}\n\t\t} catch (error) {\n\t\t\t// File not found is not an error - return empty settings\n\t\t\tif ((error as { code?: string }).code === 'ENOENT') {\n\t\t\t\tlogger.debug(`No global settings file found at ${settingsPath}`)\n\t\t\t\treturn {}\n\t\t\t}\n\n\t\t\t// Other file system errors - warn and continue\n\t\t\tlogger.warn(`Error reading global settings file at ${settingsPath}: ${error instanceof Error ? error.message : 'Unknown error'}. Ignoring global settings.`)\n\t\t\treturn {}\n\t\t}\n\t}\n\n\t/**\n\t * Get effective protected branches list with mainBranch always included\n\t *\n\t * This method provides a single source of truth for protected branches logic:\n\t * 1. Use configured protectedBranches if provided\n\t * 2. Otherwise use defaults: [mainBranch, 'main', 'master', 'develop']\n\t * 3. 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