@haniffalab/cherita-react 1.4.1 → 1.4.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (138) hide show
  1. package/README.md +1 -1
  2. package/dist/cjs/components/controls/Controls.js +38 -30
  3. package/dist/cjs/components/dotplot/Dotplot.js +67 -69
  4. package/dist/cjs/components/dotplot/DotplotControls.js +103 -83
  5. package/dist/cjs/components/full-page/FullPage.js +100 -74
  6. package/dist/cjs/components/full-page/PlotAlert.js +45 -0
  7. package/dist/cjs/components/full-page/PlotTypeSelector.js +89 -44
  8. package/dist/cjs/components/heatmap/Heatmap.js +65 -65
  9. package/dist/cjs/components/heatmap/HeatmapControls.js +6 -3
  10. package/dist/cjs/components/icons/DotPlotIcon.js +64 -0
  11. package/dist/cjs/components/icons/HeatmapIcon.js +45 -0
  12. package/dist/cjs/components/icons/MatrixPlotIcon.1.js +57 -0
  13. package/dist/cjs/components/icons/MatrixPlotIcon.js +59 -0
  14. package/dist/cjs/components/icons/ScatterplotIcon.1.js +164 -0
  15. package/dist/cjs/components/icons/ScatterplotIcon.js +144 -0
  16. package/dist/cjs/components/icons/ViolinPlotIcon.js +42 -0
  17. package/dist/cjs/components/matrixplot/Matrixplot.js +65 -66
  18. package/dist/cjs/components/matrixplot/MatrixplotControls.js +8 -5
  19. package/dist/cjs/components/obs-list/ObsItem.js +258 -210
  20. package/dist/cjs/components/obs-list/ObsList.js +161 -133
  21. package/dist/cjs/components/obs-list/ObsToolbar.js +2 -3
  22. package/dist/cjs/components/obsm-list/ObsmList.js +53 -38
  23. package/dist/cjs/components/offcanvas/index.js +61 -31
  24. package/dist/cjs/components/pseudospatial/Pseudospatial.js +132 -76
  25. package/dist/cjs/components/pseudospatial/PseudospatialToolbar.js +122 -74
  26. package/dist/cjs/components/scatterplot/Scatterplot.js +127 -99
  27. package/dist/cjs/components/scatterplot/ScatterplotControls.js +45 -31
  28. package/dist/cjs/components/scatterplot/SpatialControls.js +140 -113
  29. package/dist/cjs/components/scatterplot/Toolbox.js +41 -30
  30. package/dist/cjs/components/search-bar/SearchBar.js +168 -121
  31. package/dist/cjs/components/search-bar/SearchInfo.js +76 -50
  32. package/dist/cjs/components/search-bar/SearchResults.js +93 -71
  33. package/dist/cjs/components/toolbar/Toolbar.js +46 -37
  34. package/dist/cjs/components/var-list/VarItem.js +115 -88
  35. package/dist/cjs/components/var-list/VarList.js +85 -69
  36. package/dist/cjs/components/var-list/VarListToolbar.js +59 -54
  37. package/dist/cjs/components/var-list/VarSet.js +126 -108
  38. package/dist/cjs/components/violin/Violin.js +109 -107
  39. package/dist/cjs/components/violin/ViolinControls.js +8 -5
  40. package/dist/cjs/constants/colorscales.js +19 -19
  41. package/dist/cjs/constants/constants.js +47 -47
  42. package/dist/cjs/context/DatasetContext.js +24 -16
  43. package/dist/cjs/context/FilterContext.js +11 -9
  44. package/dist/cjs/context/SettingsContext.js +255 -89
  45. package/dist/cjs/context/ZarrDataContext.js +6 -5
  46. package/dist/cjs/helpers/color-helper.js +2 -2
  47. package/dist/cjs/helpers/zarr-helper.js +3 -3
  48. package/dist/cjs/utils/Filter.js +16 -11
  49. package/dist/cjs/utils/Histogram.js +35 -33
  50. package/dist/cjs/utils/ImageViewer.js +11 -8
  51. package/dist/cjs/utils/Legend.js +37 -30
  52. package/dist/cjs/utils/LoadingIndicators.js +15 -13
  53. package/dist/cjs/utils/Resolver.js +213 -0
  54. package/dist/cjs/utils/Skeleton.js +10 -10
  55. package/dist/cjs/utils/StyledTooltip.js +44 -0
  56. package/dist/cjs/utils/VirtualizedList.js +34 -27
  57. package/dist/cjs/utils/errors.js +15 -15
  58. package/dist/cjs/utils/requests.js +21 -9
  59. package/dist/cjs/utils/search.js +4 -4
  60. package/dist/cjs/utils/string.js +6 -6
  61. package/dist/cjs/utils/zarrData.js +20 -21
  62. package/dist/css/cherita.css +64 -42
  63. package/dist/css/cherita.css.map +1 -1
  64. package/dist/esm/components/controls/Controls.js +43 -35
  65. package/dist/esm/components/dotplot/Dotplot.js +77 -78
  66. package/dist/esm/components/dotplot/DotplotControls.js +106 -85
  67. package/dist/esm/components/full-page/FullPage.js +120 -93
  68. package/dist/esm/components/full-page/PlotAlert.js +39 -0
  69. package/dist/esm/components/full-page/PlotTypeSelector.js +90 -45
  70. package/dist/esm/components/heatmap/Heatmap.js +75 -74
  71. package/dist/esm/components/heatmap/HeatmapControls.js +8 -4
  72. package/dist/esm/components/icons/DotPlotIcon.js +58 -0
  73. package/dist/esm/components/icons/HeatmapIcon.js +39 -0
  74. package/dist/esm/components/icons/MatrixPlotIcon.1.js +51 -0
  75. package/dist/esm/components/icons/MatrixPlotIcon.js +53 -0
  76. package/dist/esm/components/icons/ScatterplotIcon.1.js +158 -0
  77. package/dist/esm/components/icons/ScatterplotIcon.js +138 -0
  78. package/dist/esm/components/icons/ViolinPlotIcon.js +36 -0
  79. package/dist/esm/components/matrixplot/Matrixplot.js +75 -75
  80. package/dist/esm/components/matrixplot/MatrixplotControls.js +10 -6
  81. package/dist/esm/components/obs-list/ObsItem.js +273 -222
  82. package/dist/esm/components/obs-list/ObsList.js +176 -147
  83. package/dist/esm/components/obs-list/ObsToolbar.js +3 -3
  84. package/dist/esm/components/obsm-list/ObsmList.js +60 -44
  85. package/dist/esm/components/offcanvas/index.js +67 -37
  86. package/dist/esm/components/pseudospatial/Pseudospatial.js +145 -88
  87. package/dist/esm/components/pseudospatial/PseudospatialToolbar.js +127 -78
  88. package/dist/esm/components/scatterplot/Scatterplot.js +148 -119
  89. package/dist/esm/components/scatterplot/ScatterplotControls.js +50 -35
  90. package/dist/esm/components/scatterplot/SpatialControls.js +153 -125
  91. package/dist/esm/components/scatterplot/Toolbox.js +44 -32
  92. package/dist/esm/components/search-bar/SearchBar.js +180 -132
  93. package/dist/esm/components/search-bar/SearchInfo.js +86 -59
  94. package/dist/esm/components/search-bar/SearchResults.js +100 -77
  95. package/dist/esm/components/toolbar/Toolbar.js +49 -39
  96. package/dist/esm/components/var-list/VarItem.js +126 -98
  97. package/dist/esm/components/var-list/VarList.js +99 -82
  98. package/dist/esm/components/var-list/VarListToolbar.js +64 -58
  99. package/dist/esm/components/var-list/VarSet.js +134 -115
  100. package/dist/esm/components/violin/Violin.js +121 -118
  101. package/dist/esm/components/violin/ViolinControls.js +10 -6
  102. package/dist/esm/constants/colorscales.js +19 -19
  103. package/dist/esm/constants/constants.js +47 -47
  104. package/dist/esm/context/DatasetContext.js +31 -22
  105. package/dist/esm/context/FilterContext.js +11 -8
  106. package/dist/esm/context/SettingsContext.js +257 -90
  107. package/dist/esm/context/ZarrDataContext.js +8 -6
  108. package/dist/esm/helpers/color-helper.js +5 -5
  109. package/dist/esm/helpers/map-helper.js +2 -2
  110. package/dist/esm/helpers/zarr-helper.js +6 -6
  111. package/dist/esm/index.js +22 -22
  112. package/dist/esm/utils/Filter.js +22 -17
  113. package/dist/esm/utils/Histogram.js +39 -37
  114. package/dist/esm/utils/ImageViewer.js +12 -8
  115. package/dist/esm/utils/Legend.js +44 -36
  116. package/dist/esm/utils/LoadingIndicators.js +16 -13
  117. package/dist/esm/utils/Resolver.js +201 -0
  118. package/dist/esm/utils/Skeleton.js +11 -10
  119. package/dist/esm/utils/StyledTooltip.js +38 -0
  120. package/dist/esm/utils/VirtualizedList.js +35 -27
  121. package/dist/esm/utils/errors.js +15 -15
  122. package/dist/esm/utils/requests.js +24 -12
  123. package/dist/esm/utils/search.js +7 -7
  124. package/dist/esm/utils/string.js +7 -7
  125. package/dist/esm/utils/zarrData.js +27 -28
  126. package/package.json +18 -7
  127. package/scss/cherita-bootstrap.scss +2 -2
  128. package/scss/cherita.scss +43 -17
  129. package/scss/components/accordions.scss +4 -1
  130. package/scss/components/layouts.scss +15 -33
  131. package/scss/components/lists.scss +8 -4
  132. package/scss/components/plotly.scss +38 -26
  133. package/scss/components/plots.scss +14 -1
  134. package/dist/assets/images/plots/dotplot.svg +0 -152
  135. package/dist/assets/images/plots/heatmap.svg +0 -193
  136. package/dist/assets/images/plots/matrixplot.svg +0 -275
  137. package/dist/assets/images/plots/scatterplot.svg +0 -198
  138. package/dist/assets/images/plots/violin.svg +0 -50
package/dist/assets/images/plots/dotplot.svg DELETED
@@ -1,152 +0,0 @@
1
- <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2
- <!-- Created with Inkscape (http://www.inkscape.org/) -->
3
-
4
- <svg
5
- version="1.1"
6
- id="svg1"
7
- width="245.72157"
8
- height="303.95227"
9
- viewBox="0 0 245.72157 303.95227"
10
- sodipodi:docname="dotplot.svg"
11
- inkscape:version="1.4 (1:1.4+202410161351+e7c3feb100)"
12
- xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape"
13
- xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd"
14
- xmlns="http://www.w3.org/2000/svg"
15
- xmlns:svg="http://www.w3.org/2000/svg">
16
- <defs
17
- id="defs1" />
18
- <sodipodi:namedview
19
- id="namedview1"
20
- pagecolor="#ffffff"
21
- bordercolor="#000000"
22
- borderopacity="0.25"
23
- inkscape:showpageshadow="2"
24
- inkscape:pageopacity="0.0"
25
- inkscape:pagecheckerboard="0"
26
- inkscape:deskcolor="#d1d1d1"
27
- inkscape:zoom="1.4142136"
28
- inkscape:cx="94.752308"
29
- inkscape:cy="87.681241"
30
- inkscape:window-width="1854"
31
- inkscape:window-height="1011"
32
- inkscape:window-x="0"
33
- inkscape:window-y="0"
34
- inkscape:window-maximized="1"
35
- inkscape:current-layer="g1"
36
- showguides="true"
37
- inkscape:lockguides="false">
38
- <sodipodi:guide
39
- position="23.510117,1317.3039"
40
- orientation="1,0"
41
- id="guide3"
42
- inkscape:locked="false" />
43
- <sodipodi:guide
44
- position="123.51012,1314.8313"
45
- orientation="1,0"
46
- id="guide4"
47
- inkscape:locked="false" />
48
- <sodipodi:guide
49
- position="223.51012,1324.2961"
50
- orientation="1,0"
51
- id="guide5"
52
- inkscape:locked="false" />
53
- <sodipodi:guide
54
- position="-192.73988,1002.9836"
55
- orientation="0,-1"
56
- id="guide1"
57
- inkscape:locked="false" />
58
- <sodipodi:guide
59
- position="-332.83363,915.47581"
60
- orientation="0,-1"
61
- id="guide2"
62
- inkscape:locked="false" />
63
- <sodipodi:guide
64
- position="-500.36097,827.97971"
65
- orientation="0,-1"
66
- id="guide6"
67
- inkscape:locked="false" />
68
- <sodipodi:guide
69
- position="-1030.6852,739.98753"
70
- orientation="0,-1"
71
- id="guide7"
72
- inkscape:locked="false" />
73
- </sodipodi:namedview>
74
- <g
75
- inkscape:groupmode="layer"
76
- inkscape:label="Image"
77
- id="g1"
78
- transform="translate(-376.48988,-303.98362)">
79
- <circle
80
- style="opacity:0.994362;fill:#000000;fill-opacity:1;stroke:#070707;stroke-width:1.22386"
81
- id="path1-7-5"
82
- cx="399.83685"
83
- cy="326.50867"
84
- r="21.913118" />
85
- <circle
86
- style="opacity:0.994362;fill:#000000;fill-opacity:1;stroke:#070707;stroke-width:1.22386"
87
- id="path1-7-5-0"
88
- cx="500.00333"
89
- cy="326.63376"
90
- r="21.913118" />
91
- <circle
92
- style="opacity:0.994362;fill:#000000;fill-opacity:1;stroke:#070707;stroke-width:1.22386"
93
- id="path1-7-5-4"
94
- cx="599.6864"
95
- cy="326.75183"
96
- r="21.913118" />
97
- <circle
98
- style="opacity:0.994362;fill:#000000;fill-opacity:1;stroke:#070707;stroke-width:1.0743"
99
- id="path1-7-5-1"
100
- cx="599.33148"
101
- cy="413.78732"
102
- r="19.235212" />
103
- <circle
104
- style="opacity:0.994362;fill:#000000;fill-opacity:1;stroke:#070707;stroke-width:0.999519"
105
- id="path1-7-5-1-2"
106
- cx="599.01965"
107
- cy="501.38483"
108
- r="17.896259" />
109
- <circle
110
- style="opacity:0.994362;fill:#000000;fill-opacity:1;stroke:#070707;stroke-width:1.26125"
111
- id="path1-7-5-1-2-7"
112
- cx="500.01099"
113
- cy="500.78818"
114
- r="22.582596" />
115
- <circle
116
- style="opacity:0.994362;fill:#000000;fill-opacity:1;stroke:#070707;stroke-width:1.29865"
117
- id="path1-7-5-1-2-9"
118
- cx="401.25104"
119
- cy="497.92078"
120
- r="23.252073" />
121
- <circle
122
- style="opacity:0.994362;fill:#000000;fill-opacity:1;stroke:#070707;stroke-width:0.849959"
123
- id="path1-7-5-1-2-9-8"
124
- cx="399.97153"
125
- cy="587.68909"
126
- r="15.218354" />
127
- <circle
128
- style="opacity:0.994362;fill:#000000;fill-opacity:1;stroke:#070707;stroke-width:0.6817"
129
- id="path1-7-5-1-2-9-8-6"
130
- cx="500.01663"
131
- cy="588.84131"
132
- r="12.205709" />
133
- <circle
134
- style="opacity:0.994362;fill:#000000;fill-opacity:1;stroke:#070707;stroke-width:1.14909"
135
- id="path1-7-5-1-2-9-8-6-8"
136
- cx="598.99561"
137
- cy="586.78717"
138
- r="20.574167" />
139
- <circle
140
- style="opacity:0.994362;fill:#ffffff;fill-opacity:1;stroke:#000000;stroke-width:7.8;stroke-dasharray:none;stroke-opacity:1"
141
- id="path2"
142
- cx="398.47314"
143
- cy="413.97076"
144
- r="18.083261" />
145
- <circle
146
- style="opacity:0.994362;fill:#ffffff;fill-opacity:1;stroke:#000000;stroke-width:7.8;stroke-dasharray:none;stroke-opacity:1"
147
- id="path2-0"
148
- cx="499.53961"
149
- cy="412.97141"
150
- r="23.741936" />
151
- </g>
152
- </svg>