@haniffalab/cherita-react 1.4.1-dev.2025-10-22.61540191 → 1.4.1-dev.2025-10-23.3179e534

package/dist/esm/components/var-list/VarItem.js

@@ -1,10 +1,9 @@
-function _extends() { return _extends = Object.assign ? Object.assign.bind() : function (n) { for (var e = 1; e < arguments.length; e++) { var t = arguments[e]; for (var r in t) ({}).hasOwnProperty.call(t, r) && (n[r] = t[r]); } return n; }, _extends.apply(null, arguments); }
 function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
 function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
 function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
 function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
 function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
-import React, { useEffect, useState } from "react";
+import { useEffect, useState } from "react";
 import { faDroplet, faPlus, faTrash } from "@fortawesome/free-solid-svg-icons";
 import { FontAwesomeIcon } from "@fortawesome/react-fontawesome";
 import { MoreVert } from "@mui/icons-material";
@@ -16,6 +15,7 @@ import { useFilteredData } from "../../context/FilterContext";
 import { useSettings, useSettingsDispatch } from "../../context/SettingsContext";
 import { Histogram } from "../../utils/Histogram";
 import { useDebouncedFetch, useFetch } from "../../utils/requests";
+import { jsx as _jsx, jsxs as _jsxs, Fragment as _Fragment } from "react/jsx-runtime";
 function VarHistogram(_ref) {
   let {
     item
@@ -48,42 +48,61 @@ function VarHistogram(_ref) {
   } = useDebouncedFetch(ENDPOINT, params, {
     refetchOnMount: false
   });
-  return !serverError && /*#__PURE__*/React.createElement(Histogram, {
+  return !serverError && /*#__PURE__*/_jsx(Histogram, {
     data: fetchedData,
     isPending: isPending,
     altColor: isSliced
   });
 }
 function VarDiseaseInfoItem(item) {
-  return /*#__PURE__*/React.createElement(ListGroup.Item, {
-    key: item.disease_id,
-    className: "feature-disease-info"
-  }, /*#__PURE__*/React.createElement("button", {
-    type: "button",
-    className: "btn btn-link disease-link"
-  }, item.disease_name), /*#__PURE__*/React.createElement(Table, {
-    striped: true,
-    size: "sm",
-    responsive: true
-  }, /*#__PURE__*/React.createElement("tbody", null, /*#__PURE__*/React.createElement("tr", null, /*#__PURE__*/React.createElement("td", null, "Confidence"), /*#__PURE__*/React.createElement("td", null, item.confidence || "unknown")), /*#__PURE__*/React.createElement("tr", null, /*#__PURE__*/React.createElement("td", null, "Organ", item.organs.length > 1 ? "s" : ""), /*#__PURE__*/React.createElement("td", null, item.organs.map(o => o.name).join(", "))), !_.isEmpty(item.metadata) && _.map(item.metadata, (value, key) => {
-    if (value !== null && value !== undefined) {
-      return /*#__PURE__*/React.createElement("tr", {
-        key: key
-      }, /*#__PURE__*/React.createElement("td", null, _.upperFirst(key)), /*#__PURE__*/React.createElement("td", null, value));
-    }
-  }))));
+  return /*#__PURE__*/_jsxs(ListGroup.Item, {
+    className: "feature-disease-info",
+    children: [/*#__PURE__*/_jsx("button", {
+      type: "button",
+      className: "btn btn-link disease-link",
+      children: item.disease_name
+    }), /*#__PURE__*/_jsx(Table, {
+      striped: true,
+      size: "sm",
+      responsive: true,
+      children: /*#__PURE__*/_jsxs("tbody", {
+        children: [/*#__PURE__*/_jsxs("tr", {
+          children: [/*#__PURE__*/_jsx("td", {
+            children: "Confidence"
+          }), /*#__PURE__*/_jsx("td", {
+            children: item.confidence || "unknown"
+          })]
+        }), /*#__PURE__*/_jsxs("tr", {
+          children: [/*#__PURE__*/_jsxs("td", {
+            children: ["Organ", item.organs.length > 1 ? "s" : ""]
+          }), /*#__PURE__*/_jsx("td", {
+            children: item.organs.map(o => o.name).join(", ")
+          })]
+        }), !_.isEmpty(item.metadata) && _.map(item.metadata, (value, key) => {
+          if (value !== null && value !== undefined) {
+            return /*#__PURE__*/_jsxs("tr", {
+              children: [/*#__PURE__*/_jsx("td", {
+                children: _.upperFirst(key)
+              }), /*#__PURE__*/_jsx("td", {
+                children: value
+              })]
+            }, key);
+          }
+        })]
+      })
+    })]
+  }, item.disease_id);
 }
 export function VarDiseaseInfo(_ref2) {
   let {
     data
   } = _ref2;
-  return /*#__PURE__*/React.createElement(ListGroup, {
-    className: "feature-disease-info-list"
-  }, data.map(item => {
-    return /*#__PURE__*/React.createElement(VarDiseaseInfoItem, _extends({
-      key: item.disease_id
-    }, item));
-  }));
+  return /*#__PURE__*/_jsx(ListGroup, {
+    className: "feature-disease-info-list",
+    children: data.map(item => {
+      return /*#__PURE__*/_jsx(VarDiseaseInfoItem, _objectSpread({}, item), item.disease_id);
+    })
+  });
 }
 export function SelectionItem(_ref3) {
   let {
@@ -112,55 +131,64 @@ export function SelectionItem(_ref3) {
     enabled: !!dataset.diseaseDatasets.length
   });
   const hasDiseaseInfo = !isPending && !serverError && !!(fetchedData !== null && fetchedData !== void 0 && fetchedData.length);
-  return /*#__PURE__*/React.createElement(React.Fragment, null, /*#__PURE__*/React.createElement("div", {
-    className: hasDiseaseInfo ? "cursor-pointer" : "",
-    onClick: () => {
-      setOpenInfo(o => !o);
-    }
-  }, /*#__PURE__*/React.createElement("div", {
-    className: "d-flex align-items-center"
-  }, /*#__PURE__*/React.createElement("div", {
-    className: "var-item-name",
-    title: item.name
-  }, item.name), /*#__PURE__*/React.createElement("div", {
-    className: "ms-auto d-flex align-items-center gap-1"
-  }, hasDiseaseInfo && /*#__PURE__*/React.createElement(MoreVert, null), /*#__PURE__*/React.createElement(VarHistogram, {
-    item: item
-  }), showSetColorEncoding && /*#__PURE__*/React.createElement(Button, {
-    type: "button",
-    key: item.matrix_index,
-    variant: isActive ? "primary" : isNotInData ? "outline-secondary" : "outline-primary",
-    className: "m-0 p-0 px-1",
-    onClick: e => {
-      e.stopPropagation();
-      selectVar();
-    },
-    disabled: isNotInData,
-    title: isNotInData ? "Not present in data" : "Set as color encoding"
-  }, /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-    icon: faDroplet
-  }), isMultiple && /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-    icon: faPlus,
-    size: "xs",
-    className: "ps-xs-1"
-  })), showRemove && /*#__PURE__*/React.createElement(Button, {
-    type: "button",
-    className: "m-0 p-0 px-1",
-    variant: "outline-secondary",
-    title: "Remove from list",
-    onClick: e => {
-      e.stopPropagation();
-      removeVar();
-    }
-  }, /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-    icon: faTrash
-  }))))), hasDiseaseInfo && /*#__PURE__*/React.createElement(Collapse, {
-    in: openInfo
-  }, /*#__PURE__*/React.createElement("div", {
-    className: "mt-2 var-disease-info-collapse"
-  }, /*#__PURE__*/React.createElement(VarDiseaseInfo, {
-    data: fetchedData
-  }))));
+  return /*#__PURE__*/_jsxs(_Fragment, {
+    children: [/*#__PURE__*/_jsx("div", {
+      className: hasDiseaseInfo ? "cursor-pointer" : "",
+      onClick: () => {
+        setOpenInfo(o => !o);
+      },
+      children: /*#__PURE__*/_jsxs("div", {
+        className: "d-flex align-items-center",
+        children: [/*#__PURE__*/_jsx("div", {
+          className: "var-item-name",
+          title: item.name,
+          children: item.name
+        }), /*#__PURE__*/_jsxs("div", {
+          className: "ms-auto d-flex align-items-center gap-1",
+          children: [hasDiseaseInfo && /*#__PURE__*/_jsx(MoreVert, {}), /*#__PURE__*/_jsx(VarHistogram, {
+            item: item
+          }), showSetColorEncoding && /*#__PURE__*/_jsxs(Button, {
+            type: "button",
+            variant: isActive ? "primary" : isNotInData ? "outline-secondary" : "outline-primary",
+            className: "m-0 p-0 px-1",
+            onClick: e => {
+              e.stopPropagation();
+              selectVar();
+            },
+            disabled: isNotInData,
+            title: isNotInData ? "Not present in data" : "Set as color encoding",
+            children: [/*#__PURE__*/_jsx(FontAwesomeIcon, {
+              icon: faDroplet
+            }), isMultiple && /*#__PURE__*/_jsx(FontAwesomeIcon, {
+              icon: faPlus,
+              size: "xs",
+              className: "ps-xs-1"
+            })]
+          }, item.matrix_index), showRemove && /*#__PURE__*/_jsx(Button, {
+            type: "button",
+            className: "m-0 p-0 px-1",
+            variant: "outline-secondary",
+            title: "Remove from list",
+            onClick: e => {
+              e.stopPropagation();
+              removeVar();
+            },
+            children: /*#__PURE__*/_jsx(FontAwesomeIcon, {
+              icon: faTrash
+            })
+          })]
+        })]
+      })
+    }), hasDiseaseInfo && /*#__PURE__*/_jsx(Collapse, {
+      in: openInfo,
+      children: /*#__PURE__*/_jsx("div", {
+        className: "mt-2 var-disease-info-collapse",
+        children: /*#__PURE__*/_jsx(VarDiseaseInfo, {
+          data: fetchedData
+        })
+      })
+    })]
+  });
 }
 const select = (dispatch, mode, item) => {
   if (mode === SELECTION_MODES.SINGLE) {
@@ -216,14 +244,14 @@ export function VarItem(_ref4) {
     });
   };
   if (item && mode === SELECTION_MODES.SINGLE) {
-    return /*#__PURE__*/React.createElement(SelectionItem, {
+    return /*#__PURE__*/_jsx(SelectionItem, {
       item: item,
       isActive: settings.colorEncoding === COLOR_ENCODINGS.VAR && active === item.matrix_index,
       selectVar: selectVar,
       removeVar: removeVar
     });
   } else if (mode === SELECTION_MODES.MULTIPLE) {
-    return /*#__PURE__*/React.createElement(SelectionItem, {
+    return /*#__PURE__*/_jsx(SelectionItem, {
       item: item,
       isActive: item.matrix_index !== -1 && _.includes(active, item.matrix_index),
       selectVar: toggleVar,

package/dist/esm/components/var-list/VarList.js

@@ -3,7 +3,7 @@ function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t =
 function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
 function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
 function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
-import React, { useEffect, useState } from "react";
+import { useEffect, useState } from "react";
 import { faTimes } from "@fortawesome/free-solid-svg-icons";
 import { FontAwesomeIcon } from "@fortawesome/react-fontawesome";
 import _ from "lodash";
@@ -19,6 +19,7 @@ import { useSettings, useSettingsDispatch } from "../../context/SettingsContext"
 import { LoadingSpinner } from "../../utils/LoadingIndicators";
 import { useFetch } from "../../utils/requests";
 import { useSelectedMultiVar, useSelectedVar, useSettingsVars } from "../../utils/Resolver";
+import { jsx as _jsx, jsxs as _jsxs, Fragment as _Fragment } from "react/jsx-runtime";
 export const useVarMean = function (varKeys) {
   let enabled = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : false;
   const ENDPOINT = "matrix/mean";
@@ -95,22 +96,22 @@ export function VarNamesList(_ref) {
     }
   }, [settings.varSort.var.sort, settings.varSort.var.sortOrder, varMeans.isPending, varMeans.serverError, varMeans.fetchedData, settingsVars]);
   const makeListItem = item => {
-    return /*#__PURE__*/React.createElement(ListGroup.Item, {
-      key: item.matrix_index
-    }, /*#__PURE__*/React.createElement(VarItem, {
-      item: item,
-      active: active,
-      mode: mode
-    }));
+    return /*#__PURE__*/_jsx(ListGroup.Item, {
+      children: /*#__PURE__*/_jsx(VarItem, {
+        item: item,
+        active: active,
+        mode: mode
+      })
+    }, item.matrix_index);
   };
   const makeSetListItem = set => {
-    return /*#__PURE__*/React.createElement(ListGroup.Item, {
-      key: set.name
-    }, /*#__PURE__*/React.createElement(VarSet, {
-      set: set,
-      active: active,
-      mode: mode
-    }));
+    return /*#__PURE__*/_jsx(ListGroup.Item, {
+      children: /*#__PURE__*/_jsx(VarSet, {
+        set: set,
+        active: active,
+        mode: mode
+      })
+    }, set.name);
   };
   const varList = _.map(sortedVars, item => {
     if (item.isSet) {
@@ -132,41 +133,55 @@ export function VarNamesList(_ref) {
     return setName;
   };
   const isPending = varMeans.isPending && settings.varSort.var.sort === VAR_SORT.MATRIX;
-  return /*#__PURE__*/React.createElement("div", {
-    className: "mt-3 d-flex flex-column h-100"
-  }, /*#__PURE__*/React.createElement("div", {
-    className: "d-flex justify-content-between mb-2"
-  }, /*#__PURE__*/React.createElement("h5", null, _.capitalize(displayName)), /*#__PURE__*/React.createElement(ButtonGroup, {
-    "aria-label": "Feature options",
-    size: "sm"
-  }, /*#__PURE__*/React.createElement(Button, {
-    variant: "info",
-    onClick: () => {
-      dispatch({
-        type: "add.var",
-        var: {
-          name: newSetName(),
-          vars: [],
-          isSet: true
-        }
-      });
-    }
-  }, "New set"), /*#__PURE__*/React.createElement(Button, {
-    variant: "info",
-    onClick: () => {
-      dispatch({
-        type: "reset.vars"
-      });
-    }
-  }, /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-    icon: faTimes,
-    className: "me-1"
-  }), "Clear"))), /*#__PURE__*/React.createElement(React.Fragment, null, !varList.length ? /*#__PURE__*/React.createElement(Alert, {
-    variant: "light"
-  }, "Search for a feature.") : /*#__PURE__*/React.createElement(React.Fragment, null, /*#__PURE__*/React.createElement(VarListToolbar, null), /*#__PURE__*/React.createElement("div", {
-    className: "overflow-auto flex-grow-1 modern-scrollbars"
-  }, isPending && /*#__PURE__*/React.createElement(LoadingSpinner, null), /*#__PURE__*/React.createElement(ListGroup, {
-    variant: "flush",
-    className: "cherita-list"
-  }, varList)))));
+  return /*#__PURE__*/_jsxs("div", {
+    className: "mt-3 d-flex flex-column h-100",
+    children: [/*#__PURE__*/_jsxs("div", {
+      className: "d-flex justify-content-between mb-2",
+      children: [/*#__PURE__*/_jsx("h5", {
+        children: _.capitalize(displayName)
+      }), /*#__PURE__*/_jsxs(ButtonGroup, {
+        "aria-label": "Feature options",
+        size: "sm",
+        children: [/*#__PURE__*/_jsx(Button, {
+          variant: "info",
+          onClick: () => {
+            dispatch({
+              type: "add.var",
+              var: {
+                name: newSetName(),
+                vars: [],
+                isSet: true
+              }
+            });
+          },
+          children: "New set"
+        }), /*#__PURE__*/_jsxs(Button, {
+          variant: "info",
+          onClick: () => {
+            dispatch({
+              type: "reset.vars"
+            });
+          },
+          children: [/*#__PURE__*/_jsx(FontAwesomeIcon, {
+            icon: faTimes,
+            className: "me-1"
+          }), "Clear"]
+        })]
+      })]
+    }), /*#__PURE__*/_jsx(_Fragment, {
+      children: !varList.length ? /*#__PURE__*/_jsx(Alert, {
+        variant: "light",
+        children: "Search for a feature."
+      }) : /*#__PURE__*/_jsxs(_Fragment, {
+        children: [/*#__PURE__*/_jsx(VarListToolbar, {}), /*#__PURE__*/_jsxs("div", {
+          className: "overflow-auto flex-grow-1 modern-scrollbars",
+          children: [isPending && /*#__PURE__*/_jsx(LoadingSpinner, {}), /*#__PURE__*/_jsx(ListGroup, {
+            variant: "flush",
+            className: "cherita-list",
+            children: varList
+          })]
+        })]
+      })
+    })]
+  });
 }

package/dist/esm/components/var-list/VarListToolbar.js

@@ -1,4 +1,4 @@
-import React, { useState } from "react";
+import { useState } from "react";
 import { faArrowDown19, faArrowDownAZ, faArrowUp91, faArrowUpZA, faXmark } from "@fortawesome/free-solid-svg-icons";
 import { FontAwesomeIcon } from "@fortawesome/react-fontawesome";
 import { ToggleButton, ToggleButtonGroup } from "react-bootstrap";
@@ -6,6 +6,7 @@ import { VAR_SORT, VAR_SORT_ORDER } from "../../constants/constants";
 import { useSettings, useSettingsDispatch } from "../../context/SettingsContext";
 
 // @TODO: set option for "var" and "disease"
+import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
 export function VarListToolbar(_ref) {
   let {
     varType = "var"
@@ -35,53 +36,58 @@ export function VarListToolbar(_ref) {
       });
     }
   };
-  return /*#__PURE__*/React.createElement("div", {
-    className: "d-flex justify-content-end align-items-center mb-2"
-  }, /*#__PURE__*/React.createElement(ToggleButtonGroup, {
-    name: "sortfeatures",
-    "aria-label": "Sort features by",
-    size: "sm",
-    type: "radio"
-  }, /*#__PURE__*/React.createElement(ToggleButton, {
-    id: VAR_SORT.NAME,
-    value: VAR_SORT.NAME,
-    "aria-label": "alphabetical",
-    title: "Sort alphabetically",
-    selected: sort === VAR_SORT.NAME,
-    onChange: () => {
-      handleSort(VAR_SORT.NAME, nameSortOrder, setNameSortOrder);
-    }
-  }, nameSortOrder === VAR_SORT_ORDER.ASC ? /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-    icon: faArrowDownAZ
-  }) : /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-    icon: faArrowUpZA
-  })), /*#__PURE__*/React.createElement(ToggleButton, {
-    id: VAR_SORT.MATRIX,
-    value: VAR_SORT.MATRIX,
-    "aria-label": "matrix value",
-    title: "Sort by matrix value",
-    selected: sort === VAR_SORT.MATRIX,
-    onChange: () => {
-      handleSort(VAR_SORT.MATRIX, matrixSortOrder, setMatrixSortOrder);
-    }
-  }, matrixSortOrder === VAR_SORT_ORDER.ASC ? /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-    icon: faArrowDown19
-  }) : /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-    icon: faArrowUp91
-  })), /*#__PURE__*/React.createElement(ToggleButton, {
-    id: "none",
-    value: "none",
-    "aria-label": "none",
-    title: "No sorting",
-    onClick: () => {
-      setSort(VAR_SORT.NONE);
-      dispatch({
-        type: "set.varSort.sort",
-        var: varType,
-        sort: VAR_SORT.NONE
-      });
-    }
-  }, /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-    icon: faXmark
-  }))));
+  return /*#__PURE__*/_jsx("div", {
+    className: "d-flex justify-content-end align-items-center mb-2",
+    children: /*#__PURE__*/_jsxs(ToggleButtonGroup, {
+      name: "sortfeatures",
+      "aria-label": "Sort features by",
+      size: "sm",
+      type: "radio",
+      children: [/*#__PURE__*/_jsx(ToggleButton, {
+        id: VAR_SORT.NAME,
+        value: VAR_SORT.NAME,
+        "aria-label": "alphabetical",
+        title: "Sort alphabetically",
+        selected: sort === VAR_SORT.NAME,
+        onChange: () => {
+          handleSort(VAR_SORT.NAME, nameSortOrder, setNameSortOrder);
+        },
+        children: nameSortOrder === VAR_SORT_ORDER.ASC ? /*#__PURE__*/_jsx(FontAwesomeIcon, {
+          icon: faArrowDownAZ
+        }) : /*#__PURE__*/_jsx(FontAwesomeIcon, {
+          icon: faArrowUpZA
+        })
+      }), /*#__PURE__*/_jsx(ToggleButton, {
+        id: VAR_SORT.MATRIX,
+        value: VAR_SORT.MATRIX,
+        "aria-label": "matrix value",
+        title: "Sort by matrix value",
+        selected: sort === VAR_SORT.MATRIX,
+        onChange: () => {
+          handleSort(VAR_SORT.MATRIX, matrixSortOrder, setMatrixSortOrder);
+        },
+        children: matrixSortOrder === VAR_SORT_ORDER.ASC ? /*#__PURE__*/_jsx(FontAwesomeIcon, {
+          icon: faArrowDown19
+        }) : /*#__PURE__*/_jsx(FontAwesomeIcon, {
+          icon: faArrowUp91
+        })
+      }), /*#__PURE__*/_jsx(ToggleButton, {
+        id: "none",
+        value: "none",
+        "aria-label": "none",
+        title: "No sorting",
+        onClick: () => {
+          setSort(VAR_SORT.NONE);
+          dispatch({
+            type: "set.varSort.sort",
+            var: varType,
+            sort: VAR_SORT.NONE
+          });
+        },
+        children: /*#__PURE__*/_jsx(FontAwesomeIcon, {
+          icon: faXmark
+        })
+      })]
+    })
+  });
 }