@haniffalab/cherita-react 1.4.1-dev.2025-10-22.61540191 → 1.4.1-dev.2025-10-23.3179e534

package/dist/esm/components/search-bar/SearchInfo.js

@@ -3,7 +3,7 @@ function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t =
 function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
 function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
 function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
-import React, { useState, useEffect } from "react";
+import { useState, useEffect } from "react";
 import { faPlus } from "@fortawesome/free-solid-svg-icons";
 import { FontAwesomeIcon } from "@fortawesome/react-fontawesome";
 import _ from "lodash";
@@ -14,6 +14,7 @@ import { useSettings, useSettingsDispatch } from "../../context/SettingsContext"
 import { useFetch } from "../../utils/requests";
 import { VarDiseaseInfo } from "../var-list/VarItem";
 import { sortMeans, useVarMean } from "../var-list/VarList";
+import { jsx as _jsx, Fragment as _Fragment, jsxs as _jsxs } from "react/jsx-runtime";
 export function VarInfo(_ref) {
   let {
     varItem
@@ -40,9 +41,19 @@ export function VarInfo(_ref) {
     enabled: !!dataset.diseaseDatasets.length
   });
   const hasDiseaseInfo = !isPending && !serverError && !!(fetchedData !== null && fetchedData !== void 0 && fetchedData.length);
-  return /*#__PURE__*/React.createElement("div", null, /*#__PURE__*/React.createElement("h5", null, varItem.name), !!dataset.diseaseDatasets.length && isPending && /*#__PURE__*/React.createElement("p", null, "Loading..."), hasDiseaseInfo && /*#__PURE__*/React.createElement(React.Fragment, null, /*#__PURE__*/React.createElement("h6", null, "Associated diseases"), /*#__PURE__*/React.createElement(VarDiseaseInfo, {
-    data: fetchedData
-  })));
+  return /*#__PURE__*/_jsxs("div", {
+    children: [/*#__PURE__*/_jsx("h5", {
+      children: varItem.name
+    }), !!dataset.diseaseDatasets.length && isPending && /*#__PURE__*/_jsx("p", {
+      children: "Loading..."
+    }), hasDiseaseInfo && /*#__PURE__*/_jsxs(_Fragment, {
+      children: [/*#__PURE__*/_jsx("h6", {
+        children: "Associated diseases"
+      }), /*#__PURE__*/_jsx(VarDiseaseInfo, {
+        data: fetchedData
+      })]
+    })]
+  });
 }
 export function DiseaseInfo(_ref2) {
   let {
@@ -93,49 +104,65 @@ export function DiseaseInfo(_ref2) {
     }
   }, [settings.varSort.disease.sort, settings.varSort.disease.sortOrder, diseaseVars, varMeans.fetchedData, varMeans.isPending, varMeans.serverError]);
   const diseaseVarList = _.map(sortedDiseaseVars, v => {
-    return /*#__PURE__*/React.createElement(ListGroup.Item, {
-      key: v.gene_id
-    }, /*#__PURE__*/React.createElement("div", {
-      className: "d-flex justify-content-between align-items-center w-100"
-    }, v.name, /*#__PURE__*/React.createElement("div", {
-      className: "d-flex align-items-center gap-1"
-    }, /*#__PURE__*/React.createElement(Button, {
-      type: "button",
-      className: "m-0 p-0 px-1",
-      variant: "outline-secondary",
-      title: "Add to list",
-      onClick: () => {
-        handleSelect(dispatch, {
-          name: v.name,
-          index: v.index,
-          matrix_index: v.matrix_index
-        });
-      }
-    }, /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-      icon: faPlus
-    })))));
+    return /*#__PURE__*/_jsx(ListGroup.Item, {
+      children: /*#__PURE__*/_jsxs("div", {
+        className: "d-flex justify-content-between align-items-center w-100",
+        children: [v.name, /*#__PURE__*/_jsx("div", {
+          className: "d-flex align-items-center gap-1",
+          children: /*#__PURE__*/_jsx(Button, {
+            type: "button",
+            className: "m-0 p-0 px-1",
+            variant: "outline-secondary",
+            title: "Add to list",
+            onClick: () => {
+              handleSelect(dispatch, {
+                name: v.name,
+                index: v.index,
+                matrix_index: v.matrix_index
+              });
+            },
+            children: /*#__PURE__*/_jsx(FontAwesomeIcon, {
+              icon: faPlus
+            })
+          })
+        })]
+      })
+    }, v.gene_id);
   });
   const isPending = diseaseData.isPending || varMeans.isPending && settings.varSort.disease.sort === VAR_SORT.MATRIX;
-  return /*#__PURE__*/React.createElement("div", null, /*#__PURE__*/React.createElement("h5", null, disease.disease_name), /*#__PURE__*/React.createElement("h6", null, "Implicated genes"), isPending ? /*#__PURE__*/React.createElement("p", null, "Loading...") : /*#__PURE__*/React.createElement(React.Fragment, null, /*#__PURE__*/React.createElement("div", {
-    className: "d-flex justify-content-end mb-2"
-  }, /*#__PURE__*/React.createElement(Button, {
-    size: "sm",
-    title: "Add all as a set",
-    onClick: () => {
-      addVarSet(dispatch, {
-        name: disease.disease_name,
-        vars: _.map(diseaseVars, v => {
-          return {
-            index: v.index,
-            name: v.name,
-            matrix_index: v.matrix_index
-          };
+  return /*#__PURE__*/_jsxs("div", {
+    children: [/*#__PURE__*/_jsx("h5", {
+      children: disease.disease_name
+    }), /*#__PURE__*/_jsx("h6", {
+      children: "Implicated genes"
+    }), isPending ? /*#__PURE__*/_jsx("p", {
+      children: "Loading..."
+    }) : /*#__PURE__*/_jsxs(_Fragment, {
+      children: [/*#__PURE__*/_jsx("div", {
+        className: "d-flex justify-content-end mb-2",
+        children: /*#__PURE__*/_jsxs(Button, {
+          size: "sm",
+          title: "Add all as a set",
+          onClick: () => {
+            addVarSet(dispatch, {
+              name: disease.disease_name,
+              vars: _.map(diseaseVars, v => {
+                return {
+                  index: v.index,
+                  name: v.name,
+                  matrix_index: v.matrix_index
+                };
+              })
+            });
+          },
+          children: [/*#__PURE__*/_jsx(FontAwesomeIcon, {
+            icon: faPlus
+          }), " Add all as a set"]
         })
-      });
-    }
-  }, /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-    icon: faPlus
-  }), " Add all as a set")), /*#__PURE__*/React.createElement(ListGroup, {
-    className: "overflow-scroll"
-  }, diseaseVarList)));
+      }), /*#__PURE__*/_jsx(ListGroup, {
+        className: "overflow-scroll",
+        children: diseaseVarList
+      })]
+    })]
+  });
 }

package/dist/esm/components/search-bar/SearchResults.js

@@ -3,7 +3,7 @@ function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t =
 function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
 function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
 function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
-import React, { useDeferredValue, useEffect, useMemo, useState } from "react";
+import { useDeferredValue, useEffect, useMemo, useState } from "react";
 import { faPlus } from "@fortawesome/free-solid-svg-icons";
 import { FontAwesomeIcon } from "@fortawesome/react-fontawesome";
 import _ from "lodash";
@@ -11,6 +11,7 @@ import { Button, ListGroup } from "react-bootstrap";
 import { useSettingsDispatch } from "../../context/SettingsContext";
 import { useDiseaseSearch, useVarSearch } from "../../utils/search";
 import { VirtualizedList } from "../../utils/VirtualizedList";
+import { jsx as _jsx, jsxs as _jsxs, Fragment as _Fragment } from "react/jsx-runtime";
 export function VarSearchResults(_ref) {
   let {
     text,
@@ -55,47 +56,59 @@ export function VarSearchResults(_ref) {
     }
   }, [fetchedData, isPending, serverError, setResultsLength]);
   const getDataAtIndex = index => deferredData[index];
-  const ItemComponent = item => /*#__PURE__*/React.createElement(React.Fragment, null, /*#__PURE__*/React.createElement("div", {
-    className: "virtualized-list-wrapper"
-  }, /*#__PURE__*/React.createElement(ListGroup.Item, {
-    key: item,
-    onClick: () => {
-      setSelectedResult(item);
-    },
-    active: (selectedResult === null || selectedResult === void 0 ? void 0 : selectedResult.index) === item.index
-  }, /*#__PURE__*/React.createElement("div", {
-    className: "d-flex justify-content-between align-items-center w-100"
-  }, /*#__PURE__*/React.createElement("div", null, item.name), /*#__PURE__*/React.createElement("div", {
-    className: "d-flex align-items-center gap-1"
-  }, /*#__PURE__*/React.createElement(Button, {
-    type: "button",
-    className: "m-0 p-0 px-1",
-    variant: "outline-secondary",
-    title: "Add to list",
-    disabled: isStale,
-    onClick: () => {
-      handleSelect(dispatch, item);
-    }
-  }, /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-    icon: faPlus
-  })))))));
-  return /*#__PURE__*/React.createElement("div", null, /*#__PURE__*/React.createElement("div", {
-    className: "search-results"
-  }, /*#__PURE__*/React.createElement(ListGroup, {
-    variant: "flush",
-    className: "cherita-list"
-  }, deferredData !== null && deferredData !== void 0 && deferredData.length ? /*#__PURE__*/React.createElement(VirtualizedList, {
-    getDataAtIndex: getDataAtIndex,
-    count: deferredData.length,
-    ItemComponent: ItemComponent,
-    overscan: 500,
-    estimateSize: () => 42,
-    maxHeight: "70vh"
-  }) : /*#__PURE__*/React.createElement(ListGroup.Item, {
-    key: "empty",
-    as: "button",
-    disabled: true
-  }, !text.length ? "Search features" : !serverError ? isStale || isPending ? "Loading..." : "No items found" : "Failed to fetch data"))));
+  const ItemComponent = item => /*#__PURE__*/_jsx(_Fragment, {
+    children: /*#__PURE__*/_jsx("div", {
+      className: "virtualized-list-wrapper",
+      children: /*#__PURE__*/_jsx(ListGroup.Item, {
+        onClick: () => {
+          setSelectedResult(item);
+        },
+        active: (selectedResult === null || selectedResult === void 0 ? void 0 : selectedResult.index) === item.index,
+        children: /*#__PURE__*/_jsxs("div", {
+          className: "d-flex justify-content-between align-items-center w-100",
+          children: [/*#__PURE__*/_jsx("div", {
+            children: item.name
+          }), /*#__PURE__*/_jsx("div", {
+            className: "d-flex align-items-center gap-1",
+            children: /*#__PURE__*/_jsx(Button, {
+              type: "button",
+              className: "m-0 p-0 px-1",
+              variant: "outline-secondary",
+              title: "Add to list",
+              disabled: isStale,
+              onClick: () => {
+                handleSelect(dispatch, item);
+              },
+              children: /*#__PURE__*/_jsx(FontAwesomeIcon, {
+                icon: faPlus
+              })
+            })
+          })]
+        })
+      }, item)
+    })
+  });
+  return /*#__PURE__*/_jsx("div", {
+    children: /*#__PURE__*/_jsx("div", {
+      className: "search-results",
+      children: /*#__PURE__*/_jsx(ListGroup, {
+        variant: "flush",
+        className: "cherita-list",
+        children: deferredData !== null && deferredData !== void 0 && deferredData.length ? /*#__PURE__*/_jsx(VirtualizedList, {
+          getDataAtIndex: getDataAtIndex,
+          count: deferredData.length,
+          ItemComponent: ItemComponent,
+          overscan: 500,
+          estimateSize: () => 42,
+          maxHeight: "70vh"
+        }) : /*#__PURE__*/_jsx(ListGroup.Item, {
+          as: "button",
+          disabled: true,
+          children: !text.length ? "Search features" : !serverError ? isStale || isPending ? "Loading..." : "No items found" : "Failed to fetch data"
+        }, "empty")
+      })
+    })
+  });
 }
 export function DiseasesSearchResults(_ref2) {
   let {
@@ -139,32 +152,42 @@ export function DiseasesSearchResults(_ref2) {
     }
   }, [fetchedData, isPending, serverError, setResultsLength]);
   const getDataAtIndex = index => deferredData[index];
-  const ItemComponent = item => /*#__PURE__*/React.createElement(React.Fragment, null, /*#__PURE__*/React.createElement("div", {
-    className: "virtualized-list-wrapper"
-  }, /*#__PURE__*/React.createElement(ListGroup.Item, {
-    key: item.name,
-    onClick: () => {
-      setSelectedResult(item);
-    },
-    active: (selectedResult === null || selectedResult === void 0 ? void 0 : selectedResult.id) === item.id
-  }, /*#__PURE__*/React.createElement("div", {
-    className: "d-flex justify-content-between align-items-center w-100"
-  }, /*#__PURE__*/React.createElement("div", null, item.disease_name)))));
-  return /*#__PURE__*/React.createElement("div", null, /*#__PURE__*/React.createElement("div", {
-    className: "search-results"
-  }, /*#__PURE__*/React.createElement(ListGroup, {
-    variant: "flush",
-    className: "cherita-list"
-  }, deferredData !== null && deferredData !== void 0 && deferredData.length ? /*#__PURE__*/React.createElement(VirtualizedList, {
-    getDataAtIndex: getDataAtIndex,
-    count: deferredData.length,
-    ItemComponent: ItemComponent,
-    overscan: 250,
-    estimateSize: () => 32,
-    maxHeight: "70vh"
-  }) : /*#__PURE__*/React.createElement(ListGroup.Item, {
-    key: "empty",
-    as: "button",
-    disabled: true
-  }, !text.length ? "Search diseases" : !serverError ? isStale || isPending ? "Loading..." : "No items found" : "Failed to fetch data"))));
+  const ItemComponent = item => /*#__PURE__*/_jsx(_Fragment, {
+    children: /*#__PURE__*/_jsx("div", {
+      className: "virtualized-list-wrapper",
+      children: /*#__PURE__*/_jsx(ListGroup.Item, {
+        onClick: () => {
+          setSelectedResult(item);
+        },
+        active: (selectedResult === null || selectedResult === void 0 ? void 0 : selectedResult.id) === item.id,
+        children: /*#__PURE__*/_jsx("div", {
+          className: "d-flex justify-content-between align-items-center w-100",
+          children: /*#__PURE__*/_jsx("div", {
+            children: item.disease_name
+          })
+        })
+      }, item.name)
+    })
+  });
+  return /*#__PURE__*/_jsx("div", {
+    children: /*#__PURE__*/_jsx("div", {
+      className: "search-results",
+      children: /*#__PURE__*/_jsx(ListGroup, {
+        variant: "flush",
+        className: "cherita-list",
+        children: deferredData !== null && deferredData !== void 0 && deferredData.length ? /*#__PURE__*/_jsx(VirtualizedList, {
+          getDataAtIndex: getDataAtIndex,
+          count: deferredData.length,
+          ItemComponent: ItemComponent,
+          overscan: 250,
+          estimateSize: () => 32,
+          maxHeight: "70vh"
+        }) : /*#__PURE__*/_jsx(ListGroup.Item, {
+          as: "button",
+          disabled: true,
+          children: !text.length ? "Search diseases" : !serverError ? isStale || isPending ? "Loading..." : "No items found" : "Failed to fetch data"
+        }, "empty")
+      })
+    })
+  });
 }

package/dist/esm/components/toolbar/Toolbar.js

@@ -1,7 +1,7 @@
-import React from "react";
 import { faList, faSearch, faSliders } from "@fortawesome/free-solid-svg-icons";
 import { FontAwesomeIcon } from "@fortawesome/react-fontawesome";
 import { Container, Nav, Navbar } from "react-bootstrap";
+import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
 export const Toolbar = _ref => {
   let {
     showObsBtn = true,
@@ -11,41 +11,51 @@ export const Toolbar = _ref => {
     setShowVars,
     setShowControls
   } = _ref;
-  return /*#__PURE__*/React.createElement(Navbar, {
+  return /*#__PURE__*/_jsx(Navbar, {
     expand: "md",
     bg: "primary",
     variant: "dark",
-    className: "cherita-navbar"
-  }, /*#__PURE__*/React.createElement(Container, {
-    fluid: true
-  }, /*#__PURE__*/React.createElement(Navbar.Toggle, {
-    "aria-controls": "navbarScroll"
-  }), /*#__PURE__*/React.createElement(Navbar.Collapse, {
-    id: "navbarScroll"
-  }, /*#__PURE__*/React.createElement(Nav, {
-    navbarScroll: true
-  }, showObsBtn && /*#__PURE__*/React.createElement(Nav.Item, {
-    className: "me-2"
-  }, /*#__PURE__*/React.createElement(Nav.Link, {
-    onClick: () => setShowObs(true)
-  }, /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-    icon: faList,
-    className: "me-2"
-  }), "Explore Categories")), showVarsBtn && /*#__PURE__*/React.createElement(Nav.Item, {
-    className: "me-2"
-  }, /*#__PURE__*/React.createElement(Nav.Link, {
-    onClick: () => setShowVars(true)
-  }, /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-    icon: faSearch,
-    className: "me-2"
-  }), "Search Genes")), showCtrlsBtn && /*#__PURE__*/React.createElement(Nav.Item, {
-    className: "me-2"
-  }, /*#__PURE__*/React.createElement(Nav.Link, {
-    onClick: () => setShowControls(true)
-  }, /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-    icon: faSliders,
-    className: "me-2"
-  }), "Controls"))))));
+    className: "cherita-navbar",
+    children: /*#__PURE__*/_jsxs(Container, {
+      fluid: true,
+      children: [/*#__PURE__*/_jsx(Navbar.Toggle, {
+        "aria-controls": "navbarScroll"
+      }), /*#__PURE__*/_jsx(Navbar.Collapse, {
+        id: "navbarScroll",
+        children: /*#__PURE__*/_jsxs(Nav, {
+          navbarScroll: true,
+          children: [showObsBtn && /*#__PURE__*/_jsx(Nav.Item, {
+            className: "me-2",
+            children: /*#__PURE__*/_jsxs(Nav.Link, {
+              onClick: () => setShowObs(true),
+              children: [/*#__PURE__*/_jsx(FontAwesomeIcon, {
+                icon: faList,
+                className: "me-2"
+              }), "Explore Categories"]
+            })
+          }), showVarsBtn && /*#__PURE__*/_jsx(Nav.Item, {
+            className: "me-2",
+            children: /*#__PURE__*/_jsxs(Nav.Link, {
+              onClick: () => setShowVars(true),
+              children: [/*#__PURE__*/_jsx(FontAwesomeIcon, {
+                icon: faSearch,
+                className: "me-2"
+              }), "Search Genes"]
+            })
+          }), showCtrlsBtn && /*#__PURE__*/_jsx(Nav.Item, {
+            className: "me-2",
+            children: /*#__PURE__*/_jsxs(Nav.Link, {
+              onClick: () => setShowControls(true),
+              children: [/*#__PURE__*/_jsx(FontAwesomeIcon, {
+                icon: faSliders,
+                className: "me-2"
+              }), "Controls"]
+            })
+          })]
+        })
+      })]
+    })
+  });
 };
 export const ObsPlotlyToolbar = _ref2 => {
   let {