@haniffalab/cherita-react 1.3.0-dev.2025-06-06.f1eddad0 → 1.3.1-dev.2025-10-29.6de4119f

package/dist/esm/components/var-list/VarListToolbar.js

@@ -1,14 +1,15 @@
-import React, { useState } from "react";
-import { faArrowDown19, faArrowDownAZ, faArrowUp91, faArrowUpZA, faXmark } from "@fortawesome/free-solid-svg-icons";
-import { FontAwesomeIcon } from "@fortawesome/react-fontawesome";
-import { ToggleButton, ToggleButtonGroup } from "react-bootstrap";
-import { VAR_SORT, VAR_SORT_ORDER } from "../../constants/constants";
-import { useSettings, useSettingsDispatch } from "../../context/SettingsContext";
+import { useState } from 'react';
+import { faArrowDown19, faArrowDownAZ, faArrowUp91, faArrowUpZA, faXmark } from '@fortawesome/free-solid-svg-icons';
+import { FontAwesomeIcon } from '@fortawesome/react-fontawesome';
+import { ToggleButton, ToggleButtonGroup } from 'react-bootstrap';
+import { VAR_SORT, VAR_SORT_ORDER } from '../../constants/constants';
+import { useSettings, useSettingsDispatch } from '../../context/SettingsContext';
 
 // @TODO: set option for "var" and "disease"
+import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
 export function VarListToolbar(_ref) {
   let {
-    varType = "var"
+    varType = 'var'
   } = _ref;
   const settings = useSettings();
   const dispatch = useSettingsDispatch();
@@ -19,7 +20,7 @@ export function VarListToolbar(_ref) {
     if (sort !== sortValue) {
       setSort(sortValue);
       dispatch({
-        type: "set.varSort",
+        type: 'set.varSort',
         var: varType,
         sort: sortValue,
         sortOrder: sortOrder
@@ -28,60 +29,65 @@ export function VarListToolbar(_ref) {
       const newSortOrder = sortOrder === VAR_SORT_ORDER.ASC ? VAR_SORT_ORDER.DESC : VAR_SORT_ORDER.ASC;
       setSortOrder(newSortOrder);
       dispatch({
-        type: "set.varSort",
+        type: 'set.varSort',
         var: varType,
         sort: sortValue,
         sortOrder: newSortOrder
       });
     }
   };
-  return /*#__PURE__*/React.createElement("div", {
-    className: "d-flex justify-content-end align-items-center mb-2"
-  }, /*#__PURE__*/React.createElement(ToggleButtonGroup, {
-    name: "sortfeatures",
-    "aria-label": "Sort features by",
-    size: "sm",
-    type: "radio"
-  }, /*#__PURE__*/React.createElement(ToggleButton, {
-    id: VAR_SORT.NAME,
-    value: VAR_SORT.NAME,
-    "aria-label": "alphabetical",
-    title: "Sort alphabetically",
-    selected: sort === VAR_SORT.NAME,
-    onChange: () => {
-      handleSort(VAR_SORT.NAME, nameSortOrder, setNameSortOrder);
-    }
-  }, nameSortOrder === VAR_SORT_ORDER.ASC ? /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-    icon: faArrowDownAZ
-  }) : /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-    icon: faArrowUpZA
-  })), /*#__PURE__*/React.createElement(ToggleButton, {
-    id: VAR_SORT.MATRIX,
-    value: VAR_SORT.MATRIX,
-    "aria-label": "matrix value",
-    title: "Sort by matrix value",
-    selected: sort === VAR_SORT.MATRIX,
-    onChange: () => {
-      handleSort(VAR_SORT.MATRIX, matrixSortOrder, setMatrixSortOrder);
-    }
-  }, matrixSortOrder === VAR_SORT_ORDER.ASC ? /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-    icon: faArrowDown19
-  }) : /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-    icon: faArrowUp91
-  })), /*#__PURE__*/React.createElement(ToggleButton, {
-    id: "none",
-    value: "none",
-    "aria-label": "none",
-    title: "No sorting",
-    onClick: () => {
-      setSort(VAR_SORT.NONE);
-      dispatch({
-        type: "set.varSort.sort",
-        var: varType,
-        sort: VAR_SORT.NONE
-      });
-    }
-  }, /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-    icon: faXmark
-  }))));
+  return /*#__PURE__*/_jsx("div", {
+    className: "d-flex justify-content-end align-items-center mb-2",
+    children: /*#__PURE__*/_jsxs(ToggleButtonGroup, {
+      name: "sortfeatures",
+      "aria-label": "Sort features by",
+      size: "sm",
+      type: "radio",
+      children: [/*#__PURE__*/_jsx(ToggleButton, {
+        id: VAR_SORT.NAME,
+        value: VAR_SORT.NAME,
+        "aria-label": "alphabetical",
+        title: "Sort alphabetically",
+        selected: sort === VAR_SORT.NAME,
+        onChange: () => {
+          handleSort(VAR_SORT.NAME, nameSortOrder, setNameSortOrder);
+        },
+        children: nameSortOrder === VAR_SORT_ORDER.ASC ? /*#__PURE__*/_jsx(FontAwesomeIcon, {
+          icon: faArrowDownAZ
+        }) : /*#__PURE__*/_jsx(FontAwesomeIcon, {
+          icon: faArrowUpZA
+        })
+      }), /*#__PURE__*/_jsx(ToggleButton, {
+        id: VAR_SORT.MATRIX,
+        value: VAR_SORT.MATRIX,
+        "aria-label": "matrix value",
+        title: "Sort by matrix value",
+        selected: sort === VAR_SORT.MATRIX,
+        onChange: () => {
+          handleSort(VAR_SORT.MATRIX, matrixSortOrder, setMatrixSortOrder);
+        },
+        children: matrixSortOrder === VAR_SORT_ORDER.ASC ? /*#__PURE__*/_jsx(FontAwesomeIcon, {
+          icon: faArrowDown19
+        }) : /*#__PURE__*/_jsx(FontAwesomeIcon, {
+          icon: faArrowUp91
+        })
+      }), /*#__PURE__*/_jsx(ToggleButton, {
+        id: "none",
+        value: "none",
+        "aria-label": "none",
+        title: "No sorting",
+        onClick: () => {
+          setSort(VAR_SORT.NONE);
+          dispatch({
+            type: 'set.varSort.sort',
+            var: varType,
+            sort: VAR_SORT.NONE
+          });
+        },
+        children: /*#__PURE__*/_jsx(FontAwesomeIcon, {
+          icon: faXmark
+        })
+      })]
+    })
+  });
 }

package/dist/esm/components/var-list/VarSet.js

@@ -1,18 +1,18 @@
-import React, { useState } from "react";
-import { faChevronDown, faChevronUp, faCircleInfo, faDroplet, faPlus, faTrash } from "@fortawesome/free-solid-svg-icons";
-import { FontAwesomeIcon } from "@fortawesome/react-fontawesome";
-import _ from "lodash";
-import { Button, Collapse, ListGroup, OverlayTrigger, Tooltip } from "react-bootstrap";
-import { SelectionItem } from "./VarItem";
-import { COLOR_ENCODINGS, SELECTION_MODES } from "../../constants/constants";
-import { useSettings, useSettingsDispatch } from "../../context/SettingsContext";
-import { SearchModal } from "../search-bar/SearchBar";
+import { useState } from 'react';
+import { faChevronDown, faChevronUp, faCircleInfo, faDroplet, faPlus, faTrash } from '@fortawesome/free-solid-svg-icons';
+import { FontAwesomeIcon } from '@fortawesome/react-fontawesome';
+import _ from 'lodash';
+import { Button, Collapse, ListGroup, OverlayTrigger, Tooltip } from 'react-bootstrap';
+import { SelectionItem } from './VarItem';
+import { COLOR_ENCODINGS, SELECTION_MODES } from '../../constants/constants';
+import { useSettings, useSettingsDispatch } from '../../context/SettingsContext';
+import { SearchModal } from '../search-bar/SearchBar';
 
 // @TODO: add button to score genes and plot
-
+import { jsx as _jsx, jsxs as _jsxs, Fragment as _Fragment } from "react/jsx-runtime";
 const addVarToSet = (dispatch, set, v) => {
   dispatch({
-    type: "add.varSet.var",
+    type: 'add.varSet.var',
     varSet: set,
     var: v
   });
@@ -28,100 +28,119 @@ function SelectionSet(_ref) {
   } = _ref;
   const [openSet, setOpenSet] = useState(false);
   const [showModal, setShowModal] = useState(false);
-  const [searchText, setSearchText] = useState("");
+  const [searchText, setSearchText] = useState('');
   const varList = set.vars.length ? _.map(set.vars, v => {
-    return /*#__PURE__*/React.createElement(ListGroup.Item, {
-      key: v.name
-    }, /*#__PURE__*/React.createElement(SelectionItem, {
-      item: v,
-      showSetColorEncoding: false,
-      removeVar: () => removeSetVar(v)
-    }));
-  }) : /*#__PURE__*/React.createElement(ListGroup.Item, null, /*#__PURE__*/React.createElement("div", {
-    className: "text-muted"
-  }, "No features in this set"));
-  return /*#__PURE__*/React.createElement(React.Fragment, null, /*#__PURE__*/React.createElement("div", {
-    className: "d-flex justify-content-between cursor-pointer",
-    onClick: () => {
-      setOpenSet(o => !o);
-    }
-  }, /*#__PURE__*/React.createElement("div", {
-    className: "d-flex justify-content-between align-items-center w-100"
-  }, /*#__PURE__*/React.createElement("div", {
-    className: "ellipsis-text",
-    title: set.name
-  }, set.name), /*#__PURE__*/React.createElement("div", {
-    className: "d-flex align-items-center gap-1"
-  }, /*#__PURE__*/React.createElement(OverlayTrigger, {
-    placement: "top",
-    overlay: /*#__PURE__*/React.createElement(Tooltip, null, "This set represents the mean value of its features")
-  }, /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-    icon: faCircleInfo
-  })), /*#__PURE__*/React.createElement(Button, {
-    type: "button",
-    variant: "outline-primary",
-    className: "m-0 p-0 px-1",
-    disabled: !set.vars.length,
-    title: "Open set"
-  }, /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-    icon: openSet ? faChevronUp : faChevronDown
-  })), /*#__PURE__*/React.createElement(Button, {
-    type: "button",
-    variant: "outline-primary",
-    className: "m-0 p-0 px-1",
-    onClick: e => {
-      e.stopPropagation();
-      setShowModal(true);
-    },
-    title: "Add to set"
-  }, /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-    icon: faPlus
-  })), /*#__PURE__*/React.createElement(Button, {
-    type: "button",
-    variant: isActive ? "primary" : "outline-primary",
-    className: "m-0 p-0 px-1",
-    onClick: e => {
-      e.stopPropagation();
-      selectSet();
-    },
-    disabled: !set.vars.length,
-    title: "Set as color encoding"
-  }, /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-    icon: faDroplet
-  }), isMultiple && /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-    icon: faPlus,
-    size: "xs",
-    className: "ps-xs-1"
-  })), /*#__PURE__*/React.createElement(Button, {
-    type: "button",
-    className: "m-0 p-0 px-1",
-    variant: "outline-secondary",
-    title: "Remove from list",
-    onClick: e => {
-      e.stopPropagation();
-      removeSet();
-    }
-  }, /*#__PURE__*/React.createElement(FontAwesomeIcon, {
-    icon: faTrash
-  }))))), /*#__PURE__*/React.createElement(Collapse, {
-    in: openSet
-  }, /*#__PURE__*/React.createElement("div", {
-    className: "mt-2"
-  }, /*#__PURE__*/React.createElement(ListGroup, {
-    variant: "flush",
-    className: "cherita-list var-set-list"
-  }, varList))), /*#__PURE__*/React.createElement(SearchModal, {
-    show: showModal,
-    handleClose: () => setShowModal(false),
-    text: searchText,
-    setText: setSearchText,
-    displayText: "features",
-    handleSelect: (d, i) => {
-      addVarToSet(d, set, i);
-    },
-    searchVar: true,
-    searchDiseases: false
-  }));
+    return /*#__PURE__*/_jsx(ListGroup.Item, {
+      children: /*#__PURE__*/_jsx(SelectionItem, {
+        item: v,
+        showSetColorEncoding: false,
+        removeVar: () => removeSetVar(v)
+      })
+    }, v.name);
+  }) : /*#__PURE__*/_jsx(ListGroup.Item, {
+    children: /*#__PURE__*/_jsx("div", {
+      className: "text-muted",
+      children: "No features in this set"
+    })
+  });
+  return /*#__PURE__*/_jsxs(_Fragment, {
+    children: [/*#__PURE__*/_jsx("div", {
+      className: "d-flex justify-content-between cursor-pointer",
+      onClick: () => {
+        setOpenSet(o => !o);
+      },
+      children: /*#__PURE__*/_jsxs("div", {
+        className: "d-flex justify-content-between align-items-center w-100",
+        children: [/*#__PURE__*/_jsx("div", {
+          className: "ellipsis-text",
+          title: set.name,
+          children: set.name
+        }), /*#__PURE__*/_jsxs("div", {
+          className: "d-flex align-items-center gap-1",
+          children: [/*#__PURE__*/_jsx(OverlayTrigger, {
+            placement: "top",
+            overlay: /*#__PURE__*/_jsx(Tooltip, {
+              children: "This set represents the mean value of its features"
+            }),
+            children: /*#__PURE__*/_jsx(FontAwesomeIcon, {
+              icon: faCircleInfo
+            })
+          }), /*#__PURE__*/_jsx(Button, {
+            type: "button",
+            variant: "outline-primary",
+            className: "m-0 p-0 px-1",
+            disabled: !set.vars.length,
+            title: "Open set",
+            children: /*#__PURE__*/_jsx(FontAwesomeIcon, {
+              icon: openSet ? faChevronUp : faChevronDown
+            })
+          }), /*#__PURE__*/_jsx(Button, {
+            type: "button",
+            variant: "outline-primary",
+            className: "m-0 p-0 px-1",
+            onClick: e => {
+              e.stopPropagation();
+              setShowModal(true);
+            },
+            title: "Add to set",
+            children: /*#__PURE__*/_jsx(FontAwesomeIcon, {
+              icon: faPlus
+            })
+          }), /*#__PURE__*/_jsxs(Button, {
+            type: "button",
+            variant: isActive ? 'primary' : 'outline-primary',
+            className: "m-0 p-0 px-1",
+            onClick: e => {
+              e.stopPropagation();
+              selectSet();
+            },
+            disabled: !set.vars.length,
+            title: "Set as color encoding",
+            children: [/*#__PURE__*/_jsx(FontAwesomeIcon, {
+              icon: faDroplet
+            }), isMultiple && /*#__PURE__*/_jsx(FontAwesomeIcon, {
+              icon: faPlus,
+              size: "xs",
+              className: "ps-xs-1"
+            })]
+          }), /*#__PURE__*/_jsx(Button, {
+            type: "button",
+            className: "m-0 p-0 px-1",
+            variant: "outline-secondary",
+            title: "Remove from list",
+            onClick: e => {
+              e.stopPropagation();
+              removeSet();
+            },
+            children: /*#__PURE__*/_jsx(FontAwesomeIcon, {
+              icon: faTrash
+            })
+          })]
+        })]
+      })
+    }), /*#__PURE__*/_jsx(Collapse, {
+      in: openSet,
+      children: /*#__PURE__*/_jsx("div", {
+        className: "mt-2",
+        children: /*#__PURE__*/_jsx(ListGroup, {
+          variant: "flush",
+          className: "cherita-list var-set-list",
+          children: varList
+        })
+      })
+    }), /*#__PURE__*/_jsx(SearchModal, {
+      show: showModal,
+      handleClose: () => setShowModal(false),
+      text: searchText,
+      setText: setSearchText,
+      displayText: 'features',
+      handleSelect: (d, i) => {
+        addVarToSet(d, set, i);
+      },
+      searchVar: true,
+      searchDiseases: false
+    })]
+  });
 }
 export function VarSet(_ref2) {
   let {
@@ -134,16 +153,16 @@ export function VarSet(_ref2) {
   const selectSet = () => {
     if (mode === SELECTION_MODES.SINGLE) {
       dispatch({
-        type: "select.var",
+        type: 'select.var',
         var: set
       });
       dispatch({
-        type: "set.colorEncoding",
-        value: "var"
+        type: 'set.colorEncoding',
+        value: 'var'
       });
     } else if (mode === SELECTION_MODES.MULTIPLE) {
       dispatch({
-        type: "select.multivar",
+        type: 'select.multivar',
         var: set
       });
     }
@@ -152,37 +171,37 @@ export function VarSet(_ref2) {
     if (mode === SELECTION_MODES.SINGLE) {
       if (active === set.name) {
         dispatch({
-          type: "reset.var"
+          type: 'reset.var'
         });
       }
     } else if (mode === SELECTION_MODES.MULTIPLE) {
       if (active.includes(set.name)) {
         dispatch({
-          type: "deselect.multivar",
+          type: 'deselect.multivar',
           var: set
         });
       }
     }
     dispatch({
-      type: "remove.var",
+      type: 'remove.var',
       var: set
     });
   };
   const removeSetVar = v => {
     dispatch({
-      type: "remove.varSet.var",
+      type: 'remove.varSet.var',
       varSet: set,
       var: v
     });
   };
   const toggleSet = () => {
     dispatch({
-      type: "toggle.multivar",
+      type: 'toggle.multivar',
       var: set
     });
   };
   if (set && mode === SELECTION_MODES.SINGLE) {
-    return /*#__PURE__*/React.createElement(SelectionSet, {
+    return /*#__PURE__*/_jsx(SelectionSet, {
       set: set,
       isActive: settings.colorEncoding === COLOR_ENCODINGS.VAR && active === set.name,
       selectSet: selectSet,
@@ -190,7 +209,7 @@ export function VarSet(_ref2) {
       removeSetVar: v => removeSetVar(v)
     });
   } else if (mode === SELECTION_MODES.MULTIPLE) {
-    return /*#__PURE__*/React.createElement(SelectionSet, {
+    return /*#__PURE__*/_jsx(SelectionSet, {
       set: set,
       isActive: _.includes(active, set.name),
       selectSet: toggleSet,