@haniffalab/cherita-react 1.3.0-dev.2025-06-06.f1eddad0 → 1.3.1-dev.2025-10-29.6de4119f
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +1 -1
- package/dist/cjs/components/controls/Controls.js +38 -30
- package/dist/cjs/components/dotplot/Dotplot.js +67 -69
- package/dist/cjs/components/dotplot/DotplotControls.js +103 -83
- package/dist/cjs/components/full-page/FullPage.js +99 -105
- package/dist/cjs/components/full-page/PlotAlert.js +45 -0
- package/dist/cjs/components/full-page/PlotTypeSelector.js +89 -44
- package/dist/cjs/components/heatmap/Heatmap.js +65 -65
- package/dist/cjs/components/heatmap/HeatmapControls.js +6 -3
- package/dist/cjs/components/icons/DotPlotIcon.js +64 -0
- package/dist/cjs/components/icons/HeatmapIcon.js +45 -0
- package/dist/cjs/components/icons/MatrixPlotIcon.1.js +57 -0
- package/dist/cjs/components/icons/MatrixPlotIcon.js +59 -0
- package/dist/cjs/components/icons/ScatterplotIcon.1.js +164 -0
- package/dist/cjs/components/icons/ScatterplotIcon.js +144 -0
- package/dist/cjs/components/icons/ViolinPlotIcon.js +42 -0
- package/dist/cjs/components/matrixplot/Matrixplot.js +65 -66
- package/dist/cjs/components/matrixplot/MatrixplotControls.js +8 -5
- package/dist/cjs/components/obs-list/ObsItem.js +267 -205
- package/dist/cjs/components/obs-list/ObsList.js +161 -129
- package/dist/cjs/components/obs-list/ObsToolbar.js +2 -3
- package/dist/cjs/components/obsm-list/ObsmList.js +67 -28
- package/dist/cjs/components/offcanvas/index.js +62 -27
- package/dist/cjs/components/pseudospatial/Pseudospatial.js +132 -76
- package/dist/cjs/components/pseudospatial/PseudospatialToolbar.js +122 -74
- package/dist/cjs/components/scatterplot/Scatterplot.js +128 -100
- package/dist/cjs/components/scatterplot/ScatterplotControls.js +45 -31
- package/dist/cjs/components/scatterplot/SpatialControls.js +140 -113
- package/dist/cjs/components/scatterplot/Toolbox.js +41 -30
- package/dist/cjs/components/search-bar/SearchBar.js +176 -120
- package/dist/cjs/components/search-bar/SearchInfo.js +76 -50
- package/dist/cjs/components/search-bar/SearchResults.js +93 -71
- package/dist/cjs/components/toolbar/Toolbar.js +46 -37
- package/dist/cjs/components/var-list/VarItem.js +131 -103
- package/dist/cjs/components/var-list/VarList.js +85 -71
- package/dist/cjs/components/var-list/VarListToolbar.js +59 -54
- package/dist/cjs/components/var-list/VarSet.js +126 -108
- package/dist/cjs/components/violin/Violin.js +109 -97
- package/dist/cjs/components/violin/ViolinControls.js +8 -5
- package/dist/cjs/constants/colorscales.js +19 -19
- package/dist/cjs/constants/constants.js +51 -48
- package/dist/cjs/context/DatasetContext.js +26 -17
- package/dist/cjs/context/FilterContext.js +11 -9
- package/dist/cjs/context/SettingsContext.js +271 -88
- package/dist/cjs/context/ZarrDataContext.js +6 -5
- package/dist/cjs/helpers/color-helper.js +2 -2
- package/dist/cjs/helpers/zarr-helper.js +3 -3
- package/dist/cjs/utils/Filter.js +16 -11
- package/dist/cjs/utils/Histogram.js +35 -33
- package/dist/cjs/utils/ImageViewer.js +11 -8
- package/dist/cjs/utils/Legend.js +37 -30
- package/dist/cjs/utils/LoadingIndicators.js +15 -13
- package/dist/cjs/utils/Resolver.js +213 -0
- package/dist/cjs/utils/Skeleton.js +10 -10
- package/dist/cjs/utils/StyledTooltip.js +44 -0
- package/dist/cjs/utils/VirtualizedList.js +36 -29
- package/dist/cjs/utils/errors.js +15 -15
- package/dist/cjs/utils/requests.js +21 -9
- package/dist/cjs/utils/search.js +4 -4
- package/dist/cjs/utils/string.js +6 -6
- package/dist/cjs/utils/zarrData.js +20 -21
- package/dist/css/cherita.css +135 -65
- package/dist/css/cherita.css.map +1 -1
- package/dist/esm/components/controls/Controls.js +43 -35
- package/dist/esm/components/dotplot/Dotplot.js +77 -78
- package/dist/esm/components/dotplot/DotplotControls.js +106 -85
- package/dist/esm/components/full-page/FullPage.js +119 -124
- package/dist/esm/components/full-page/PlotAlert.js +39 -0
- package/dist/esm/components/full-page/PlotTypeSelector.js +90 -45
- package/dist/esm/components/heatmap/Heatmap.js +75 -74
- package/dist/esm/components/heatmap/HeatmapControls.js +8 -4
- package/dist/esm/components/icons/DotPlotIcon.js +58 -0
- package/dist/esm/components/icons/HeatmapIcon.js +39 -0
- package/dist/esm/components/icons/MatrixPlotIcon.1.js +51 -0
- package/dist/esm/components/icons/MatrixPlotIcon.js +53 -0
- package/dist/esm/components/icons/ScatterplotIcon.1.js +158 -0
- package/dist/esm/components/icons/ScatterplotIcon.js +138 -0
- package/dist/esm/components/icons/ViolinPlotIcon.js +36 -0
- package/dist/esm/components/matrixplot/Matrixplot.js +75 -75
- package/dist/esm/components/matrixplot/MatrixplotControls.js +10 -6
- package/dist/esm/components/obs-list/ObsItem.js +282 -217
- package/dist/esm/components/obs-list/ObsList.js +176 -143
- package/dist/esm/components/obs-list/ObsToolbar.js +3 -3
- package/dist/esm/components/obsm-list/ObsmList.js +71 -32
- package/dist/esm/components/offcanvas/index.js +68 -33
- package/dist/esm/components/pseudospatial/Pseudospatial.js +145 -88
- package/dist/esm/components/pseudospatial/PseudospatialToolbar.js +127 -78
- package/dist/esm/components/scatterplot/Scatterplot.js +149 -120
- package/dist/esm/components/scatterplot/ScatterplotControls.js +50 -35
- package/dist/esm/components/scatterplot/SpatialControls.js +153 -125
- package/dist/esm/components/scatterplot/Toolbox.js +44 -32
- package/dist/esm/components/search-bar/SearchBar.js +187 -130
- package/dist/esm/components/search-bar/SearchInfo.js +86 -59
- package/dist/esm/components/search-bar/SearchResults.js +100 -77
- package/dist/esm/components/toolbar/Toolbar.js +49 -39
- package/dist/esm/components/var-list/VarItem.js +142 -113
- package/dist/esm/components/var-list/VarList.js +99 -84
- package/dist/esm/components/var-list/VarListToolbar.js +64 -58
- package/dist/esm/components/var-list/VarSet.js +134 -115
- package/dist/esm/components/violin/Violin.js +121 -108
- package/dist/esm/components/violin/ViolinControls.js +10 -6
- package/dist/esm/constants/colorscales.js +19 -19
- package/dist/esm/constants/constants.js +50 -47
- package/dist/esm/context/DatasetContext.js +33 -23
- package/dist/esm/context/FilterContext.js +11 -8
- package/dist/esm/context/SettingsContext.js +273 -89
- package/dist/esm/context/ZarrDataContext.js +8 -6
- package/dist/esm/helpers/color-helper.js +5 -5
- package/dist/esm/helpers/map-helper.js +2 -2
- package/dist/esm/helpers/zarr-helper.js +6 -6
- package/dist/esm/index.js +22 -22
- package/dist/esm/utils/Filter.js +22 -17
- package/dist/esm/utils/Histogram.js +39 -37
- package/dist/esm/utils/ImageViewer.js +12 -8
- package/dist/esm/utils/Legend.js +44 -36
- package/dist/esm/utils/LoadingIndicators.js +16 -13
- package/dist/esm/utils/Resolver.js +201 -0
- package/dist/esm/utils/Skeleton.js +11 -10
- package/dist/esm/utils/StyledTooltip.js +38 -0
- package/dist/esm/utils/VirtualizedList.js +37 -29
- package/dist/esm/utils/errors.js +15 -15
- package/dist/esm/utils/requests.js +24 -12
- package/dist/esm/utils/search.js +7 -7
- package/dist/esm/utils/string.js +7 -7
- package/dist/esm/utils/zarrData.js +27 -28
- package/package.json +20 -8
- package/scss/cherita-bootstrap.scss +2 -2
- package/scss/cherita.scss +65 -16
- package/scss/components/accordions.scss +15 -2
- package/scss/components/layouts.scss +68 -50
- package/scss/components/lists.scss +16 -5
- package/scss/components/plotly.scss +38 -26
- package/scss/components/plots.scss +14 -1
- package/dist/assets/images/plots/dotplot.svg +0 -152
- package/dist/assets/images/plots/heatmap.svg +0 -193
- package/dist/assets/images/plots/matrixplot.svg +0 -275
- package/dist/assets/images/plots/scatterplot.svg +0 -198
- package/dist/assets/images/plots/violin.svg +0 -50
|
@@ -6,7 +6,7 @@ Object.defineProperty(exports, "__esModule", {
|
|
|
6
6
|
exports.SelectionItem = SelectionItem;
|
|
7
7
|
exports.VarDiseaseInfo = VarDiseaseInfo;
|
|
8
8
|
exports.VarItem = VarItem;
|
|
9
|
-
var _react =
|
|
9
|
+
var _react = require("react");
|
|
10
10
|
var _freeSolidSvgIcons = require("@fortawesome/free-solid-svg-icons");
|
|
11
11
|
var _reactFontawesome = require("@fortawesome/react-fontawesome");
|
|
12
12
|
var _iconsMaterial = require("@mui/icons-material");
|
|
@@ -18,9 +18,8 @@ var _FilterContext = require("../../context/FilterContext");
|
|
|
18
18
|
var _SettingsContext = require("../../context/SettingsContext");
|
|
19
19
|
var _Histogram = require("../../utils/Histogram");
|
|
20
20
|
var _requests = require("../../utils/requests");
|
|
21
|
+
var _jsxRuntime = require("react/jsx-runtime");
|
|
21
22
|
function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
|
|
22
|
-
function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
|
|
23
|
-
function _extends() { return _extends = Object.assign ? Object.assign.bind() : function (n) { for (var e = 1; e < arguments.length; e++) { var t = arguments[e]; for (var r in t) ({}).hasOwnProperty.call(t, r) && (n[r] = t[r]); } return n; }, _extends.apply(null, arguments); }
|
|
24
23
|
function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
|
|
25
24
|
function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
|
|
26
25
|
function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
|
|
@@ -30,7 +29,7 @@ function VarHistogram(_ref) {
|
|
|
30
29
|
let {
|
|
31
30
|
item
|
|
32
31
|
} = _ref;
|
|
33
|
-
const ENDPOINT =
|
|
32
|
+
const ENDPOINT = 'var/histograms';
|
|
34
33
|
const dataset = (0, _DatasetContext.useDataset)();
|
|
35
34
|
const settings = (0, _SettingsContext.useSettings)();
|
|
36
35
|
const {
|
|
@@ -58,42 +57,61 @@ function VarHistogram(_ref) {
|
|
|
58
57
|
} = (0, _requests.useDebouncedFetch)(ENDPOINT, params, {
|
|
59
58
|
refetchOnMount: false
|
|
60
59
|
});
|
|
61
|
-
return !serverError && /*#__PURE__*/
|
|
60
|
+
return !serverError && /*#__PURE__*/(0, _jsxRuntime.jsx)(_Histogram.Histogram, {
|
|
62
61
|
data: fetchedData,
|
|
63
62
|
isPending: isPending,
|
|
64
63
|
altColor: isSliced
|
|
65
64
|
});
|
|
66
65
|
}
|
|
67
66
|
function VarDiseaseInfoItem(item) {
|
|
68
|
-
return /*#__PURE__*/
|
|
69
|
-
|
|
70
|
-
|
|
71
|
-
|
|
72
|
-
|
|
73
|
-
|
|
74
|
-
|
|
75
|
-
|
|
76
|
-
|
|
77
|
-
|
|
78
|
-
|
|
79
|
-
|
|
80
|
-
|
|
81
|
-
|
|
82
|
-
|
|
83
|
-
|
|
84
|
-
|
|
67
|
+
return /*#__PURE__*/(0, _jsxRuntime.jsxs)(_reactBootstrap.ListGroup.Item, {
|
|
68
|
+
className: "feature-disease-info",
|
|
69
|
+
children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("button", {
|
|
70
|
+
type: "button",
|
|
71
|
+
className: "btn btn-link disease-link",
|
|
72
|
+
children: item.disease_name
|
|
73
|
+
}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Table, {
|
|
74
|
+
striped: true,
|
|
75
|
+
size: "sm",
|
|
76
|
+
responsive: true,
|
|
77
|
+
children: /*#__PURE__*/(0, _jsxRuntime.jsxs)("tbody", {
|
|
78
|
+
children: [/*#__PURE__*/(0, _jsxRuntime.jsxs)("tr", {
|
|
79
|
+
children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("td", {
|
|
80
|
+
children: "Confidence"
|
|
81
|
+
}), /*#__PURE__*/(0, _jsxRuntime.jsx)("td", {
|
|
82
|
+
children: item.confidence || 'unknown'
|
|
83
|
+
})]
|
|
84
|
+
}), /*#__PURE__*/(0, _jsxRuntime.jsxs)("tr", {
|
|
85
|
+
children: [/*#__PURE__*/(0, _jsxRuntime.jsxs)("td", {
|
|
86
|
+
children: ["Organ", item.organs.length > 1 ? 's' : '']
|
|
87
|
+
}), /*#__PURE__*/(0, _jsxRuntime.jsx)("td", {
|
|
88
|
+
children: item.organs.map(o => o.name).join(', ')
|
|
89
|
+
})]
|
|
90
|
+
}), !_lodash.default.isEmpty(item.metadata) && _lodash.default.map(item.metadata, (value, key) => {
|
|
91
|
+
if (value !== null && value !== undefined) {
|
|
92
|
+
return /*#__PURE__*/(0, _jsxRuntime.jsxs)("tr", {
|
|
93
|
+
children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("td", {
|
|
94
|
+
children: _lodash.default.upperFirst(key)
|
|
95
|
+
}), /*#__PURE__*/(0, _jsxRuntime.jsx)("td", {
|
|
96
|
+
children: value
|
|
97
|
+
})]
|
|
98
|
+
}, key);
|
|
99
|
+
}
|
|
100
|
+
})]
|
|
101
|
+
})
|
|
102
|
+
})]
|
|
103
|
+
}, item.disease_id);
|
|
85
104
|
}
|
|
86
105
|
function VarDiseaseInfo(_ref2) {
|
|
87
106
|
let {
|
|
88
107
|
data
|
|
89
108
|
} = _ref2;
|
|
90
|
-
return /*#__PURE__*/
|
|
91
|
-
className: "feature-disease-info-list"
|
|
92
|
-
|
|
93
|
-
|
|
94
|
-
|
|
95
|
-
|
|
96
|
-
}));
|
|
109
|
+
return /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.ListGroup, {
|
|
110
|
+
className: "feature-disease-info-list",
|
|
111
|
+
children: data.map(item => {
|
|
112
|
+
return /*#__PURE__*/(0, _jsxRuntime.jsx)(VarDiseaseInfoItem, _objectSpread({}, item), item.disease_id);
|
|
113
|
+
})
|
|
114
|
+
});
|
|
97
115
|
}
|
|
98
116
|
function SelectionItem(_ref3) {
|
|
99
117
|
let {
|
|
@@ -105,7 +123,7 @@ function SelectionItem(_ref3) {
|
|
|
105
123
|
showRemove = true,
|
|
106
124
|
isMultiple = false
|
|
107
125
|
} = _ref3;
|
|
108
|
-
const ENDPOINT =
|
|
126
|
+
const ENDPOINT = 'disease/gene';
|
|
109
127
|
const [openInfo, setOpenInfo] = (0, _react.useState)(false);
|
|
110
128
|
const dataset = (0, _DatasetContext.useDataset)();
|
|
111
129
|
const params = {
|
|
@@ -122,53 +140,83 @@ function SelectionItem(_ref3) {
|
|
|
122
140
|
enabled: !!dataset.diseaseDatasets.length
|
|
123
141
|
});
|
|
124
142
|
const hasDiseaseInfo = !isPending && !serverError && !!(fetchedData !== null && fetchedData !== void 0 && fetchedData.length);
|
|
125
|
-
return /*#__PURE__*/
|
|
126
|
-
|
|
127
|
-
|
|
128
|
-
|
|
129
|
-
|
|
130
|
-
|
|
131
|
-
|
|
132
|
-
|
|
133
|
-
|
|
134
|
-
|
|
135
|
-
|
|
136
|
-
|
|
137
|
-
|
|
138
|
-
|
|
139
|
-
|
|
140
|
-
|
|
141
|
-
|
|
142
|
-
|
|
143
|
-
|
|
144
|
-
|
|
145
|
-
|
|
146
|
-
|
|
147
|
-
|
|
148
|
-
|
|
149
|
-
|
|
150
|
-
|
|
151
|
-
|
|
152
|
-
|
|
153
|
-
|
|
154
|
-
|
|
155
|
-
|
|
156
|
-
|
|
157
|
-
|
|
158
|
-
|
|
159
|
-
|
|
160
|
-
|
|
161
|
-
|
|
162
|
-
|
|
163
|
-
|
|
164
|
-
|
|
165
|
-
|
|
166
|
-
|
|
167
|
-
|
|
168
|
-
|
|
169
|
-
|
|
170
|
-
|
|
143
|
+
return /*#__PURE__*/(0, _jsxRuntime.jsxs)(_jsxRuntime.Fragment, {
|
|
144
|
+
children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("div", {
|
|
145
|
+
className: hasDiseaseInfo ? 'cursor-pointer' : '',
|
|
146
|
+
onClick: () => {
|
|
147
|
+
setOpenInfo(o => !o);
|
|
148
|
+
},
|
|
149
|
+
children: /*#__PURE__*/(0, _jsxRuntime.jsxs)("div", {
|
|
150
|
+
className: "d-flex align-items-center",
|
|
151
|
+
children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("div", {
|
|
152
|
+
className: "var-item-name",
|
|
153
|
+
title: item.name,
|
|
154
|
+
children: item.name
|
|
155
|
+
}), /*#__PURE__*/(0, _jsxRuntime.jsxs)("div", {
|
|
156
|
+
className: "ms-auto d-flex align-items-center gap-1",
|
|
157
|
+
children: [hasDiseaseInfo && /*#__PURE__*/(0, _jsxRuntime.jsx)(_iconsMaterial.MoreVert, {}), /*#__PURE__*/(0, _jsxRuntime.jsx)(VarHistogram, {
|
|
158
|
+
item: item
|
|
159
|
+
}), showSetColorEncoding && /*#__PURE__*/(0, _jsxRuntime.jsxs)(_reactBootstrap.Button, {
|
|
160
|
+
type: "button",
|
|
161
|
+
variant: isActive ? 'primary' : isNotInData ? 'outline-secondary' : 'outline-primary',
|
|
162
|
+
className: "m-0 p-0 px-1",
|
|
163
|
+
onClick: e => {
|
|
164
|
+
e.stopPropagation();
|
|
165
|
+
selectVar();
|
|
166
|
+
},
|
|
167
|
+
disabled: isNotInData,
|
|
168
|
+
title: isNotInData ? 'Not present in data' : 'Set as color encoding',
|
|
169
|
+
children: [/*#__PURE__*/(0, _jsxRuntime.jsx)(_reactFontawesome.FontAwesomeIcon, {
|
|
170
|
+
icon: _freeSolidSvgIcons.faDroplet
|
|
171
|
+
}), isMultiple && /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactFontawesome.FontAwesomeIcon, {
|
|
172
|
+
icon: _freeSolidSvgIcons.faPlus,
|
|
173
|
+
size: "xs",
|
|
174
|
+
className: "ps-xs-1"
|
|
175
|
+
})]
|
|
176
|
+
}, item.matrix_index), showRemove && /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Button, {
|
|
177
|
+
type: "button",
|
|
178
|
+
className: "m-0 p-0 px-1",
|
|
179
|
+
variant: "outline-secondary",
|
|
180
|
+
title: "Remove from list",
|
|
181
|
+
onClick: e => {
|
|
182
|
+
e.stopPropagation();
|
|
183
|
+
removeVar();
|
|
184
|
+
},
|
|
185
|
+
children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactFontawesome.FontAwesomeIcon, {
|
|
186
|
+
icon: _freeSolidSvgIcons.faTrash
|
|
187
|
+
})
|
|
188
|
+
})]
|
|
189
|
+
})]
|
|
190
|
+
})
|
|
191
|
+
}), hasDiseaseInfo && /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Collapse, {
|
|
192
|
+
in: openInfo,
|
|
193
|
+
children: /*#__PURE__*/(0, _jsxRuntime.jsx)("div", {
|
|
194
|
+
className: "mt-2 var-disease-info-collapse",
|
|
195
|
+
children: /*#__PURE__*/(0, _jsxRuntime.jsx)(VarDiseaseInfo, {
|
|
196
|
+
data: fetchedData
|
|
197
|
+
})
|
|
198
|
+
})
|
|
199
|
+
})]
|
|
200
|
+
});
|
|
171
201
|
}
|
|
202
|
+
const select = (dispatch, mode, item) => {
|
|
203
|
+
if (mode === _constants.SELECTION_MODES.SINGLE) {
|
|
204
|
+
dispatch({
|
|
205
|
+
type: 'select.var',
|
|
206
|
+
var: item
|
|
207
|
+
});
|
|
208
|
+
} else if (mode === _constants.SELECTION_MODES.MULTIPLE) {
|
|
209
|
+
dispatch({
|
|
210
|
+
type: 'select.multivar',
|
|
211
|
+
var: item
|
|
212
|
+
});
|
|
213
|
+
}
|
|
214
|
+
dispatch({
|
|
215
|
+
type: 'set.colorEncoding',
|
|
216
|
+
value: _constants.COLOR_ENCODINGS.VAR
|
|
217
|
+
});
|
|
218
|
+
};
|
|
219
|
+
const debounceSelect = _lodash.default.debounce(select, 200);
|
|
172
220
|
function VarItem(_ref4) {
|
|
173
221
|
let {
|
|
174
222
|
item,
|
|
@@ -177,42 +225,22 @@ function VarItem(_ref4) {
|
|
|
177
225
|
} = _ref4;
|
|
178
226
|
const settings = (0, _SettingsContext.useSettings)();
|
|
179
227
|
const dispatch = (0, _SettingsContext.useSettingsDispatch)();
|
|
180
|
-
const selectVar = () =>
|
|
181
|
-
if (mode === _constants.SELECTION_MODES.SINGLE) {
|
|
182
|
-
dispatch({
|
|
183
|
-
type: "select.var",
|
|
184
|
-
var: item
|
|
185
|
-
});
|
|
186
|
-
dispatch({
|
|
187
|
-
type: "set.colorEncoding",
|
|
188
|
-
value: _constants.COLOR_ENCODINGS.VAR
|
|
189
|
-
});
|
|
190
|
-
} else if (mode === _constants.SELECTION_MODES.MULTIPLE) {
|
|
191
|
-
dispatch({
|
|
192
|
-
type: "select.multivar",
|
|
193
|
-
var: item
|
|
194
|
-
});
|
|
195
|
-
dispatch({
|
|
196
|
-
type: "set.colorEncoding",
|
|
197
|
-
value: _constants.COLOR_ENCODINGS.VAR
|
|
198
|
-
});
|
|
199
|
-
}
|
|
200
|
-
};
|
|
228
|
+
const selectVar = () => debounceSelect(dispatch, mode, item);
|
|
201
229
|
const removeVar = () => {
|
|
202
230
|
dispatch({
|
|
203
|
-
type:
|
|
231
|
+
type: 'remove.var',
|
|
204
232
|
var: item
|
|
205
233
|
});
|
|
206
234
|
if (mode === _constants.SELECTION_MODES.SINGLE) {
|
|
207
235
|
if (active === item.matrix_index) {
|
|
208
236
|
dispatch({
|
|
209
|
-
type:
|
|
237
|
+
type: 'reset.var'
|
|
210
238
|
});
|
|
211
239
|
}
|
|
212
240
|
} else if (mode === _constants.SELECTION_MODES.MULTIPLE) {
|
|
213
241
|
if (active.includes(item.matrix_index)) {
|
|
214
242
|
dispatch({
|
|
215
|
-
type:
|
|
243
|
+
type: 'deselect.multivar',
|
|
216
244
|
var: item
|
|
217
245
|
});
|
|
218
246
|
}
|
|
@@ -220,19 +248,19 @@ function VarItem(_ref4) {
|
|
|
220
248
|
};
|
|
221
249
|
const toggleVar = () => {
|
|
222
250
|
dispatch({
|
|
223
|
-
type:
|
|
251
|
+
type: 'toggle.multivar',
|
|
224
252
|
var: item
|
|
225
253
|
});
|
|
226
254
|
};
|
|
227
255
|
if (item && mode === _constants.SELECTION_MODES.SINGLE) {
|
|
228
|
-
return /*#__PURE__*/
|
|
256
|
+
return /*#__PURE__*/(0, _jsxRuntime.jsx)(SelectionItem, {
|
|
229
257
|
item: item,
|
|
230
258
|
isActive: settings.colorEncoding === _constants.COLOR_ENCODINGS.VAR && active === item.matrix_index,
|
|
231
259
|
selectVar: selectVar,
|
|
232
260
|
removeVar: removeVar
|
|
233
261
|
});
|
|
234
262
|
} else if (mode === _constants.SELECTION_MODES.MULTIPLE) {
|
|
235
|
-
return /*#__PURE__*/
|
|
263
|
+
return /*#__PURE__*/(0, _jsxRuntime.jsx)(SelectionItem, {
|
|
236
264
|
item: item,
|
|
237
265
|
isActive: item.matrix_index !== -1 && _lodash.default.includes(active, item.matrix_index),
|
|
238
266
|
selectVar: toggleVar,
|
|
@@ -5,7 +5,7 @@ Object.defineProperty(exports, "__esModule", {
|
|
|
5
5
|
});
|
|
6
6
|
exports.VarNamesList = VarNamesList;
|
|
7
7
|
exports.useVarMean = exports.sortMeans = void 0;
|
|
8
|
-
var _react =
|
|
8
|
+
var _react = require("react");
|
|
9
9
|
var _freeSolidSvgIcons = require("@fortawesome/free-solid-svg-icons");
|
|
10
10
|
var _reactFontawesome = require("@fortawesome/react-fontawesome");
|
|
11
11
|
var _lodash = _interopRequireDefault(require("lodash"));
|
|
@@ -20,8 +20,9 @@ var _FilterContext = require("../../context/FilterContext");
|
|
|
20
20
|
var _SettingsContext = require("../../context/SettingsContext");
|
|
21
21
|
var _LoadingIndicators = require("../../utils/LoadingIndicators");
|
|
22
22
|
var _requests = require("../../utils/requests");
|
|
23
|
+
var _Resolver = require("../../utils/Resolver");
|
|
24
|
+
var _jsxRuntime = require("react/jsx-runtime");
|
|
23
25
|
function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
|
|
24
|
-
function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
|
|
25
26
|
function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
|
|
26
27
|
function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
|
|
27
28
|
function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
|
|
@@ -29,7 +30,7 @@ function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol"
|
|
|
29
30
|
function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
|
|
30
31
|
const useVarMean = function (varKeys) {
|
|
31
32
|
let enabled = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : false;
|
|
32
|
-
const ENDPOINT =
|
|
33
|
+
const ENDPOINT = 'matrix/mean';
|
|
33
34
|
const dataset = (0, _DatasetContext.useDataset)();
|
|
34
35
|
const {
|
|
35
36
|
obsIndices
|
|
@@ -38,7 +39,7 @@ const useVarMean = function (varKeys) {
|
|
|
38
39
|
url: dataset.url,
|
|
39
40
|
varKeys: _lodash.default.map(varKeys, v => v.isSet ? {
|
|
40
41
|
name: v.name,
|
|
41
|
-
indices: v.vars.map(
|
|
42
|
+
indices: v.vars.map(vv => vv.index)
|
|
42
43
|
} : v.index),
|
|
43
44
|
obsIndices: obsIndices,
|
|
44
45
|
varNamesCol: dataset.varNamesCol
|
|
@@ -48,7 +49,7 @@ const useVarMean = function (varKeys) {
|
|
|
48
49
|
return _objectSpread(_objectSpread({}, p), {}, {
|
|
49
50
|
varKeys: _lodash.default.map(varKeys, v => v.isSet ? {
|
|
50
51
|
name: v.name,
|
|
51
|
-
indices: v.vars.map(
|
|
52
|
+
indices: v.vars.map(vv => vv.index)
|
|
52
53
|
} : v.index),
|
|
53
54
|
obsIndices: obsIndices
|
|
54
55
|
});
|
|
@@ -67,59 +68,60 @@ const sortMeans = (i, means) => {
|
|
|
67
68
|
};
|
|
68
69
|
exports.sortMeans = sortMeans;
|
|
69
70
|
function VarNamesList(_ref) {
|
|
70
|
-
var _settings$selectedVar, _settings$selectedVar2;
|
|
71
71
|
let {
|
|
72
72
|
mode = _constants.SELECTION_MODES.SINGLE,
|
|
73
|
-
displayName =
|
|
73
|
+
displayName = 'genes'
|
|
74
74
|
} = _ref;
|
|
75
75
|
const settings = (0, _SettingsContext.useSettings)();
|
|
76
76
|
const dispatch = (0, _SettingsContext.useSettingsDispatch)();
|
|
77
|
-
const
|
|
77
|
+
const selectedVar = (0, _Resolver.useSelectedVar)();
|
|
78
|
+
const selectedMultiVar = (0, _Resolver.useSelectedMultiVar)();
|
|
79
|
+
const settingsVars = (0, _Resolver.useSettingsVars)();
|
|
80
|
+
const [active, setActive] = (0, _react.useState)(mode === _constants.SELECTION_MODES.SINGLE ? (selectedVar === null || selectedVar === void 0 ? void 0 : selectedVar.matrix_index) || (selectedVar === null || selectedVar === void 0 ? void 0 : selectedVar.name) : selectedMultiVar.map(i => i.matrix_index || i.name));
|
|
78
81
|
const [sortedVars, setSortedVars] = (0, _react.useState)([]);
|
|
79
82
|
(0, _react.useEffect)(() => {
|
|
80
83
|
if (mode === _constants.SELECTION_MODES.SINGLE) {
|
|
81
|
-
|
|
82
|
-
setActive(((_settings$selectedVar3 = settings.selectedVar) === null || _settings$selectedVar3 === void 0 ? void 0 : _settings$selectedVar3.matrix_index) || ((_settings$selectedVar4 = settings.selectedVar) === null || _settings$selectedVar4 === void 0 ? void 0 : _settings$selectedVar4.name));
|
|
84
|
+
setActive((selectedVar === null || selectedVar === void 0 ? void 0 : selectedVar.matrix_index) || (selectedVar === null || selectedVar === void 0 ? void 0 : selectedVar.name));
|
|
83
85
|
}
|
|
84
|
-
}, [mode,
|
|
86
|
+
}, [mode, selectedVar]);
|
|
85
87
|
(0, _react.useEffect)(() => {
|
|
86
88
|
if (mode === _constants.SELECTION_MODES.MULTIPLE) {
|
|
87
|
-
setActive(
|
|
89
|
+
setActive(selectedMultiVar.map(i => i.matrix_index || i.name));
|
|
88
90
|
}
|
|
89
|
-
}, [mode,
|
|
90
|
-
const varMeans = useVarMean(
|
|
91
|
+
}, [mode, selectedMultiVar]);
|
|
92
|
+
const varMeans = useVarMean(settingsVars, settings.varSort.var.sort === _constants.VAR_SORT.MATRIX);
|
|
91
93
|
|
|
92
94
|
// @TODO: deferr sortedVars ?
|
|
93
95
|
(0, _react.useEffect)(() => {
|
|
94
96
|
if (settings.varSort.var.sort === _constants.VAR_SORT.MATRIX) {
|
|
95
97
|
if (!varMeans.isPending && !varMeans.serverError && varMeans.fetchedData) {
|
|
96
|
-
setSortedVars(_lodash.default.orderBy(
|
|
98
|
+
setSortedVars(_lodash.default.orderBy(settingsVars, o => {
|
|
97
99
|
return sortMeans(o, varMeans.fetchedData);
|
|
98
100
|
}, settings.varSort.var.sortOrder));
|
|
99
101
|
}
|
|
100
102
|
} else if (settings.varSort.var.sort === _constants.VAR_SORT.NAME) {
|
|
101
|
-
setSortedVars(_lodash.default.orderBy(
|
|
103
|
+
setSortedVars(_lodash.default.orderBy(settingsVars, 'name', settings.varSort.var.sortOrder));
|
|
102
104
|
} else {
|
|
103
|
-
setSortedVars(
|
|
105
|
+
setSortedVars(settingsVars);
|
|
104
106
|
}
|
|
105
|
-
}, [settings.varSort.var.sort, settings.varSort.var.sortOrder, varMeans.isPending, varMeans.serverError, varMeans.fetchedData,
|
|
107
|
+
}, [settings.varSort.var.sort, settings.varSort.var.sortOrder, varMeans.isPending, varMeans.serverError, varMeans.fetchedData, settingsVars]);
|
|
106
108
|
const makeListItem = item => {
|
|
107
|
-
return /*#__PURE__*/
|
|
108
|
-
|
|
109
|
-
|
|
110
|
-
|
|
111
|
-
|
|
112
|
-
|
|
113
|
-
})
|
|
109
|
+
return /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.ListGroup.Item, {
|
|
110
|
+
children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_VarItem.VarItem, {
|
|
111
|
+
item: item,
|
|
112
|
+
active: active,
|
|
113
|
+
mode: mode
|
|
114
|
+
})
|
|
115
|
+
}, item.matrix_index);
|
|
114
116
|
};
|
|
115
117
|
const makeSetListItem = set => {
|
|
116
|
-
return /*#__PURE__*/
|
|
117
|
-
|
|
118
|
-
|
|
119
|
-
|
|
120
|
-
|
|
121
|
-
|
|
122
|
-
})
|
|
118
|
+
return /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.ListGroup.Item, {
|
|
119
|
+
children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_VarSet.VarSet, {
|
|
120
|
+
set: set,
|
|
121
|
+
active: active,
|
|
122
|
+
mode: mode
|
|
123
|
+
})
|
|
124
|
+
}, set.name);
|
|
123
125
|
};
|
|
124
126
|
const varList = _lodash.default.map(sortedVars, item => {
|
|
125
127
|
if (item.isSet) {
|
|
@@ -141,43 +143,55 @@ function VarNamesList(_ref) {
|
|
|
141
143
|
return setName;
|
|
142
144
|
};
|
|
143
145
|
const isPending = varMeans.isPending && settings.varSort.var.sort === _constants.VAR_SORT.MATRIX;
|
|
144
|
-
return /*#__PURE__*/
|
|
145
|
-
className: "
|
|
146
|
-
|
|
147
|
-
|
|
148
|
-
|
|
149
|
-
|
|
150
|
-
|
|
151
|
-
|
|
152
|
-
|
|
153
|
-
|
|
154
|
-
|
|
155
|
-
|
|
156
|
-
|
|
157
|
-
|
|
158
|
-
|
|
159
|
-
|
|
160
|
-
|
|
161
|
-
|
|
162
|
-
|
|
163
|
-
|
|
164
|
-
|
|
165
|
-
|
|
166
|
-
|
|
167
|
-
|
|
168
|
-
|
|
169
|
-
|
|
170
|
-
|
|
171
|
-
|
|
172
|
-
|
|
173
|
-
|
|
174
|
-
|
|
175
|
-
|
|
176
|
-
|
|
177
|
-
|
|
178
|
-
|
|
179
|
-
|
|
180
|
-
|
|
181
|
-
|
|
182
|
-
|
|
146
|
+
return /*#__PURE__*/(0, _jsxRuntime.jsxs)("div", {
|
|
147
|
+
className: "mt-3 d-flex flex-column h-100",
|
|
148
|
+
children: [/*#__PURE__*/(0, _jsxRuntime.jsxs)("div", {
|
|
149
|
+
className: "d-flex justify-content-between mb-2",
|
|
150
|
+
children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("h5", {
|
|
151
|
+
children: _lodash.default.capitalize(displayName)
|
|
152
|
+
}), /*#__PURE__*/(0, _jsxRuntime.jsxs)(_ButtonGroup.default, {
|
|
153
|
+
"aria-label": "Feature options",
|
|
154
|
+
size: "sm",
|
|
155
|
+
children: [/*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Button, {
|
|
156
|
+
variant: "info",
|
|
157
|
+
onClick: () => {
|
|
158
|
+
dispatch({
|
|
159
|
+
type: 'add.var',
|
|
160
|
+
var: {
|
|
161
|
+
name: newSetName(),
|
|
162
|
+
vars: [],
|
|
163
|
+
isSet: true
|
|
164
|
+
}
|
|
165
|
+
});
|
|
166
|
+
},
|
|
167
|
+
children: "New set"
|
|
168
|
+
}), /*#__PURE__*/(0, _jsxRuntime.jsxs)(_reactBootstrap.Button, {
|
|
169
|
+
variant: "info",
|
|
170
|
+
onClick: () => {
|
|
171
|
+
dispatch({
|
|
172
|
+
type: 'reset.vars'
|
|
173
|
+
});
|
|
174
|
+
},
|
|
175
|
+
children: [/*#__PURE__*/(0, _jsxRuntime.jsx)(_reactFontawesome.FontAwesomeIcon, {
|
|
176
|
+
icon: _freeSolidSvgIcons.faTimes,
|
|
177
|
+
className: "me-1"
|
|
178
|
+
}), "Clear"]
|
|
179
|
+
})]
|
|
180
|
+
})]
|
|
181
|
+
}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_jsxRuntime.Fragment, {
|
|
182
|
+
children: !varList.length ? /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Alert, {
|
|
183
|
+
variant: "light",
|
|
184
|
+
children: "Search for a feature."
|
|
185
|
+
}) : /*#__PURE__*/(0, _jsxRuntime.jsxs)(_jsxRuntime.Fragment, {
|
|
186
|
+
children: [/*#__PURE__*/(0, _jsxRuntime.jsx)(_VarListToolbar.VarListToolbar, {}), /*#__PURE__*/(0, _jsxRuntime.jsxs)("div", {
|
|
187
|
+
className: "overflow-auto flex-grow-1 modern-scrollbars",
|
|
188
|
+
children: [isPending && /*#__PURE__*/(0, _jsxRuntime.jsx)(_LoadingIndicators.LoadingSpinner, {}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.ListGroup, {
|
|
189
|
+
variant: "flush",
|
|
190
|
+
className: "cherita-list",
|
|
191
|
+
children: varList
|
|
192
|
+
})]
|
|
193
|
+
})]
|
|
194
|
+
})
|
|
195
|
+
})]
|
|
196
|
+
});
|
|
183
197
|
}
|