@haniffalab/cherita-react 1.2.0 → 1.3.0-dev.2025-05-29.ee7e9b72
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/cjs/components/controls/Controls.js +60 -0
- package/dist/cjs/components/dotplot/Dotplot.js +47 -38
- package/dist/cjs/components/dotplot/DotplotControls.js +77 -114
- package/dist/cjs/components/full-page/FullPage.js +29 -33
- package/dist/cjs/components/full-page/FullPagePseudospatial.js +30 -33
- package/dist/cjs/components/heatmap/Heatmap.js +33 -22
- package/dist/cjs/components/heatmap/HeatmapControls.js +2 -19
- package/dist/cjs/components/matrixplot/Matrixplot.js +35 -24
- package/dist/cjs/components/matrixplot/MatrixplotControls.js +4 -34
- package/dist/cjs/components/obs-list/ObsItem.js +63 -51
- package/dist/cjs/components/obs-list/ObsList.js +53 -48
- package/dist/cjs/components/obsm-list/ObsmList.js +17 -12
- package/dist/cjs/components/offcanvas/index.js +14 -11
- package/dist/cjs/components/pseudospatial/Pseudospatial.js +78 -68
- package/dist/cjs/components/pseudospatial/PseudospatialToolbar.js +27 -21
- package/dist/cjs/components/scatterplot/Scatterplot.js +82 -76
- package/dist/cjs/components/scatterplot/ScatterplotControls.js +18 -31
- package/dist/cjs/components/scatterplot/SpatialControls.js +53 -23
- package/dist/cjs/components/scatterplot/Toolbox.js +1 -18
- package/dist/cjs/components/search-bar/SearchBar.js +156 -59
- package/dist/cjs/components/search-bar/SearchInfo.js +182 -0
- package/dist/cjs/components/search-bar/SearchResults.js +90 -60
- package/dist/cjs/components/var-list/VarItem.js +52 -75
- package/dist/cjs/components/var-list/VarList.js +47 -172
- package/dist/cjs/components/var-list/VarListToolbar.js +7 -8
- package/dist/cjs/components/var-list/VarSet.js +66 -57
- package/dist/cjs/components/violin/Violin.js +54 -43
- package/dist/cjs/components/violin/ViolinControls.js +4 -20
- package/dist/cjs/context/DatasetContext.js +26 -513
- package/dist/cjs/context/FilterContext.js +9 -8
- package/dist/cjs/context/SettingsContext.js +539 -0
- package/dist/cjs/context/ZarrDataContext.js +1 -2
- package/dist/cjs/helpers/color-helper.js +8 -8
- package/dist/cjs/helpers/zarr-helper.js +19 -16
- package/dist/cjs/utils/Filter.js +25 -21
- package/dist/cjs/utils/Histogram.js +4 -3
- package/dist/cjs/utils/ImageViewer.js +1 -2
- package/dist/cjs/utils/Legend.js +18 -12
- package/dist/cjs/utils/LoadingIndicators.js +1 -1
- package/dist/cjs/utils/VirtualizedList.js +16 -13
- package/dist/cjs/utils/errors.js +20 -22
- package/dist/cjs/utils/requests.js +13 -10
- package/dist/cjs/utils/zarrData.js +31 -50
- package/dist/css/cherita.css +84 -24
- package/dist/css/cherita.css.map +1 -1
- package/dist/esm/components/controls/Controls.js +51 -0
- package/dist/esm/components/dotplot/Dotplot.js +47 -37
- package/dist/esm/components/dotplot/DotplotControls.js +77 -112
- package/dist/esm/components/full-page/FullPage.js +29 -32
- package/dist/esm/components/full-page/FullPagePseudospatial.js +30 -32
- package/dist/esm/components/heatmap/Heatmap.js +32 -20
- package/dist/esm/components/heatmap/HeatmapControls.js +3 -20
- package/dist/esm/components/matrixplot/Matrixplot.js +34 -22
- package/dist/esm/components/matrixplot/MatrixplotControls.js +5 -35
- package/dist/esm/components/obs-list/ObsItem.js +63 -49
- package/dist/esm/components/obs-list/ObsList.js +53 -47
- package/dist/esm/components/obsm-list/ObsmList.js +17 -11
- package/dist/esm/components/offcanvas/index.js +14 -11
- package/dist/esm/components/pseudospatial/Pseudospatial.js +77 -66
- package/dist/esm/components/pseudospatial/PseudospatialToolbar.js +27 -20
- package/dist/esm/components/scatterplot/Scatterplot.js +81 -74
- package/dist/esm/components/scatterplot/ScatterplotControls.js +18 -29
- package/dist/esm/components/scatterplot/SpatialControls.js +54 -23
- package/dist/esm/components/scatterplot/Toolbox.js +1 -18
- package/dist/esm/components/search-bar/SearchBar.js +156 -59
- package/dist/esm/components/search-bar/SearchInfo.js +173 -0
- package/dist/esm/components/search-bar/SearchResults.js +91 -60
- package/dist/esm/components/var-list/VarItem.js +53 -76
- package/dist/esm/components/var-list/VarList.js +47 -171
- package/dist/esm/components/var-list/VarListToolbar.js +6 -6
- package/dist/esm/components/var-list/VarSet.js +67 -57
- package/dist/esm/components/violin/Violin.js +53 -41
- package/dist/esm/components/violin/ViolinControls.js +5 -21
- package/dist/esm/context/DatasetContext.js +25 -510
- package/dist/esm/context/FilterContext.js +8 -6
- package/dist/esm/context/SettingsContext.js +528 -0
- package/dist/esm/helpers/color-helper.js +8 -8
- package/dist/esm/helpers/zarr-helper.js +19 -16
- package/dist/esm/utils/Filter.js +25 -21
- package/dist/esm/utils/Histogram.js +4 -3
- package/dist/esm/utils/Legend.js +17 -10
- package/dist/esm/utils/LoadingIndicators.js +1 -1
- package/dist/esm/utils/VirtualizedList.js +15 -11
- package/dist/esm/utils/errors.js +20 -22
- package/dist/esm/utils/requests.js +13 -10
- package/dist/esm/utils/zarrData.js +33 -51
- package/package.json +6 -3
- package/scss/cherita.scss +50 -9
- package/scss/components/layouts.scss +24 -13
- package/scss/components/lists.scss +10 -0
- package/scss/components/plots.scss +3 -5
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@@ -7,16 +7,14 @@ exports.VarSet = VarSet;
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var _react = _interopRequireWildcard(require("react"));
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var _freeSolidSvgIcons = require("@fortawesome/free-solid-svg-icons");
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var _iconsMaterial = require("@mui/icons-material");
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var _lodash = _interopRequireDefault(require("lodash"));
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var _reactBootstrap = require("react-bootstrap");
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var _VarItem = require("./VarItem");
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var _constants = require("../../constants/constants");
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var
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var _SettingsContext = require("../../context/SettingsContext");
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var _SearchBar = require("../search-bar/SearchBar");
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var _VarItem = require("./VarItem");
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function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
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function
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function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
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function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
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const addVarToSet = (dispatch, set, v) => {
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const [showModal, setShowModal] = (0, _react.useState)(false);
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const [searchText, setSearchText] = (0, _react.useState)("");
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const varList = set.vars.length ? _lodash.default.map(set.vars, v => {
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title: "Open set"
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title: "Add to set"
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function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
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function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
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function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
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function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
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function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
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function Violin(_ref) {
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var _settings$selectedVar, _settings$selectedVar2, _settings$selectedVar3, _settings$selectedVar4, _settings$selectedObs, _settings$selectedObs2, _settings$selectedObs3;
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let {
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mode = _constants.VIOLIN_MODES.MULTIKEY
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} = _ref;
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const ENDPOINT = "violin";
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const dataset = (0, _DatasetContext.useDataset)();
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const settings = (0, _SettingsContext.useSettings)();
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const {
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obsIndices,
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isSliced
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@@ -31,76 +38,80 @@ function Violin(_ref) {
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const [data, setData] = (0, _react.useState)([]);
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const [hasSelections, setHasSelections] = (0, _react.useState)(false);
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const [params, setParams] = (0, _react.useState)(_objectSpread({
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url: dataset.url,
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mode: mode,
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scale:
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varNamesCol: dataset.varNamesCol
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scale: settings.controls.scale.violinplot,
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varNamesCol: dataset.varNamesCol
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}, {
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[_constants.VIOLIN_MODES.MULTIKEY]: {
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varKeys: settings.selectedMultiVar.map(i => i.isSet ? {
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name: i.name,
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indices: i.vars.map(v => v.index)
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} : i.index),
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obsKeys: [] // @TODO: implement
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},
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[_constants.VIOLIN_MODES.GROUPBY]: {
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varKey: (_settings$selectedVar = settings.selectedVar) !== null && _settings$selectedVar !== void 0 && _settings$selectedVar.isSet ? {
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name: (_settings$selectedVar2 = settings.selectedVar) === null || _settings$selectedVar2 === void 0 ? void 0 : _settings$selectedVar2.name,
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indices: (_settings$selectedVar3 = settings.selectedVar) === null || _settings$selectedVar3 === void 0 ? void 0 : _settings$selectedVar3.vars.map(v => v.index)
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} : (_settings$selectedVar4 = settings.selectedVar) === null || _settings$selectedVar4 === void 0 ? void 0 : _settings$selectedVar4.index,
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obsCol: settings.selectedObs,
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obsValues: !((_settings$selectedObs = settings.selectedObs) !== null && _settings$selectedObs !== void 0 && _settings$selectedObs.omit.length) ? null : _lodash.default.difference(_lodash.default.values((_settings$selectedObs2 = settings.selectedObs) === null || _settings$selectedObs2 === void 0 ? void 0 : _settings$selectedObs2.codes), (_settings$selectedObs3 = settings.selectedObs) === null || _settings$selectedObs3 === void 0 ? void 0 : _settings$selectedObs3.omit).map(c => {
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var _settings$selectedObs4;
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return (_settings$selectedObs4 = settings.selectedObs) === null || _settings$selectedObs4 === void 0 ? void 0 : _settings$selectedObs4.codesMap[c];
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}),
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obsIndices: isSliced ? [...(obsIndices || [])] : null
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}
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}[mode]));
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(0, _react.useEffect)(() => {
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if (mode === _constants.VIOLIN_MODES.MULTIKEY) {
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setParams(p => {
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return _objectSpread(_objectSpread({}, p), {}, {
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};
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});
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});
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} else if (mode === _constants.VIOLIN_MODES.GROUPBY) {
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if (
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if (settings.selectedObs && settings.selectedVar) {
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setHasSelections(true);
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} else {
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setHasSelections(false);
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}
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setParams(p => {
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var _settings$selectedVar5, _settings$selectedVar6, _settings$selectedVar7, _settings$selectedVar8, _settings$selectedObs5, _settings$selectedObs6, _settings$selectedObs7;
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return _objectSpread(_objectSpread({}, p), {}, {
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url: dataset.url,
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varKey: (_settings$selectedVar5 = settings.selectedVar) !== null && _settings$selectedVar5 !== void 0 && _settings$selectedVar5.isSet ? {
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name: (_settings$selectedVar6 = settings.selectedVar) === null || _settings$selectedVar6 === void 0 ? void 0 : _settings$selectedVar6.name,
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indices: (_settings$selectedVar7 = settings.selectedVar) === null || _settings$selectedVar7 === void 0 ? void 0 : _settings$selectedVar7.vars.map(v => v.index)
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} : (_settings$selectedVar8 = settings.selectedVar) === null || _settings$selectedVar8 === void 0 ? void 0 : _settings$selectedVar8.index,
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obsCol: settings.selectedObs,
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obsValues: !((_settings$selectedObs5 = settings.selectedObs) !== null && _settings$selectedObs5 !== void 0 && _settings$selectedObs5.omit.length) ? null : _lodash.default.difference(_lodash.default.values((_settings$selectedObs6 = settings.selectedObs) === null || _settings$selectedObs6 === void 0 ? void 0 : _settings$selectedObs6.codes), (_settings$selectedObs7 = settings.selectedObs) === null || _settings$selectedObs7 === void 0 ? void 0 : _settings$selectedObs7.omit).map(c => {
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var _settings$selectedObs8;
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return (_settings$selectedObs8 = settings.selectedObs) === null || _settings$selectedObs8 === void 0 ? void 0 : _settings$selectedObs8.codesMap[c];
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}),
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obsIndices: isSliced ? [...(obsIndices || [])] : null,
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}, [
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}, [settings.controls.scale.violinplot, settings.selectedMultiVar, settings.selectedObs, settings.selectedVar, dataset.url, dataset.varNamesCol, obsIndices, isSliced, mode]);
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}), (fetchedData === null || fetchedData === void 0 ? void 0 : fetchedData.resampled) && /*#__PURE__*/_react.default.createElement(_reactBootstrap.Alert, {
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}, /*#__PURE__*/_react.default.createElement("b", null, "Warning:"), " For performance reasons this plot was generated with resampled data. It will not be exactly the same as one produced with the entire dataset. \xA0", /*#__PURE__*/_react.default.createElement(_reactBootstrap.OverlayTrigger, {
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placement: "top",
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exports.ViolinControls = ViolinControls;
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var
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var _DatasetContext = require("../../context/DatasetContext");
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var _Controls = require("../controls/Controls");
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function ViolinControls() {
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key: scale.value,
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active: dataset.controls.scale.violinplot === scale,
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onClick: () => {
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dispatch({
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type: "set.controls.scale",
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plot: "violinplot",
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scale: scale
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});
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}
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}, scale.name));
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return /*#__PURE__*/_react.default.createElement(_reactBootstrap.ButtonToolbar, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.ButtonGroup, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.InputGroup, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.InputGroup.Text, null, "Scale"), /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.Toggle, {
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id: "dropdownStandardScale",
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variant: "light"
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}, dataset.controls.scale.violinplot.name), /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.Menu, null, scaleList)))));
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return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Form, null, /*#__PURE__*/_react.default.createElement(_Controls.ScaleSelect, {
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plot: "violinplot"
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})));
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}
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