@haniffalab/cherita-react 1.2.0 → 1.3.0-dev.2025-05-29.ee7e9b72
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/cjs/components/controls/Controls.js +60 -0
- package/dist/cjs/components/dotplot/Dotplot.js +47 -38
- package/dist/cjs/components/dotplot/DotplotControls.js +77 -114
- package/dist/cjs/components/full-page/FullPage.js +29 -33
- package/dist/cjs/components/full-page/FullPagePseudospatial.js +30 -33
- package/dist/cjs/components/heatmap/Heatmap.js +33 -22
- package/dist/cjs/components/heatmap/HeatmapControls.js +2 -19
- package/dist/cjs/components/matrixplot/Matrixplot.js +35 -24
- package/dist/cjs/components/matrixplot/MatrixplotControls.js +4 -34
- package/dist/cjs/components/obs-list/ObsItem.js +63 -51
- package/dist/cjs/components/obs-list/ObsList.js +53 -48
- package/dist/cjs/components/obsm-list/ObsmList.js +17 -12
- package/dist/cjs/components/offcanvas/index.js +14 -11
- package/dist/cjs/components/pseudospatial/Pseudospatial.js +78 -68
- package/dist/cjs/components/pseudospatial/PseudospatialToolbar.js +27 -21
- package/dist/cjs/components/scatterplot/Scatterplot.js +82 -76
- package/dist/cjs/components/scatterplot/ScatterplotControls.js +18 -31
- package/dist/cjs/components/scatterplot/SpatialControls.js +53 -23
- package/dist/cjs/components/scatterplot/Toolbox.js +1 -18
- package/dist/cjs/components/search-bar/SearchBar.js +156 -59
- package/dist/cjs/components/search-bar/SearchInfo.js +182 -0
- package/dist/cjs/components/search-bar/SearchResults.js +90 -60
- package/dist/cjs/components/var-list/VarItem.js +52 -75
- package/dist/cjs/components/var-list/VarList.js +47 -172
- package/dist/cjs/components/var-list/VarListToolbar.js +7 -8
- package/dist/cjs/components/var-list/VarSet.js +66 -57
- package/dist/cjs/components/violin/Violin.js +54 -43
- package/dist/cjs/components/violin/ViolinControls.js +4 -20
- package/dist/cjs/context/DatasetContext.js +26 -513
- package/dist/cjs/context/FilterContext.js +9 -8
- package/dist/cjs/context/SettingsContext.js +539 -0
- package/dist/cjs/context/ZarrDataContext.js +1 -2
- package/dist/cjs/helpers/color-helper.js +8 -8
- package/dist/cjs/helpers/zarr-helper.js +19 -16
- package/dist/cjs/utils/Filter.js +25 -21
- package/dist/cjs/utils/Histogram.js +4 -3
- package/dist/cjs/utils/ImageViewer.js +1 -2
- package/dist/cjs/utils/Legend.js +18 -12
- package/dist/cjs/utils/LoadingIndicators.js +1 -1
- package/dist/cjs/utils/VirtualizedList.js +16 -13
- package/dist/cjs/utils/errors.js +20 -22
- package/dist/cjs/utils/requests.js +13 -10
- package/dist/cjs/utils/zarrData.js +31 -50
- package/dist/css/cherita.css +84 -24
- package/dist/css/cherita.css.map +1 -1
- package/dist/esm/components/controls/Controls.js +51 -0
- package/dist/esm/components/dotplot/Dotplot.js +47 -37
- package/dist/esm/components/dotplot/DotplotControls.js +77 -112
- package/dist/esm/components/full-page/FullPage.js +29 -32
- package/dist/esm/components/full-page/FullPagePseudospatial.js +30 -32
- package/dist/esm/components/heatmap/Heatmap.js +32 -20
- package/dist/esm/components/heatmap/HeatmapControls.js +3 -20
- package/dist/esm/components/matrixplot/Matrixplot.js +34 -22
- package/dist/esm/components/matrixplot/MatrixplotControls.js +5 -35
- package/dist/esm/components/obs-list/ObsItem.js +63 -49
- package/dist/esm/components/obs-list/ObsList.js +53 -47
- package/dist/esm/components/obsm-list/ObsmList.js +17 -11
- package/dist/esm/components/offcanvas/index.js +14 -11
- package/dist/esm/components/pseudospatial/Pseudospatial.js +77 -66
- package/dist/esm/components/pseudospatial/PseudospatialToolbar.js +27 -20
- package/dist/esm/components/scatterplot/Scatterplot.js +81 -74
- package/dist/esm/components/scatterplot/ScatterplotControls.js +18 -29
- package/dist/esm/components/scatterplot/SpatialControls.js +54 -23
- package/dist/esm/components/scatterplot/Toolbox.js +1 -18
- package/dist/esm/components/search-bar/SearchBar.js +156 -59
- package/dist/esm/components/search-bar/SearchInfo.js +173 -0
- package/dist/esm/components/search-bar/SearchResults.js +91 -60
- package/dist/esm/components/var-list/VarItem.js +53 -76
- package/dist/esm/components/var-list/VarList.js +47 -171
- package/dist/esm/components/var-list/VarListToolbar.js +6 -6
- package/dist/esm/components/var-list/VarSet.js +67 -57
- package/dist/esm/components/violin/Violin.js +53 -41
- package/dist/esm/components/violin/ViolinControls.js +5 -21
- package/dist/esm/context/DatasetContext.js +25 -510
- package/dist/esm/context/FilterContext.js +8 -6
- package/dist/esm/context/SettingsContext.js +528 -0
- package/dist/esm/helpers/color-helper.js +8 -8
- package/dist/esm/helpers/zarr-helper.js +19 -16
- package/dist/esm/utils/Filter.js +25 -21
- package/dist/esm/utils/Histogram.js +4 -3
- package/dist/esm/utils/Legend.js +17 -10
- package/dist/esm/utils/LoadingIndicators.js +1 -1
- package/dist/esm/utils/VirtualizedList.js +15 -11
- package/dist/esm/utils/errors.js +20 -22
- package/dist/esm/utils/requests.js +13 -10
- package/dist/esm/utils/zarrData.js +33 -51
- package/package.json +6 -3
- package/scss/cherita.scss +50 -9
- package/scss/components/layouts.scss +24 -13
- package/scss/components/lists.scss +10 -0
- package/scss/components/plots.scss +3 -5
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function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
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function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
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function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
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function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
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import React, { createContext, useContext, useEffect, useReducer } from "react";
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import _ from "lodash";
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import { COLOR_ENCODINGS, DOTPLOT_SCALES, LOCAL_STORAGE_KEY, MATRIXPLOT_SCALES, OBS_TYPES, PSEUDOSPATIAL_CATEGORICAL_MODES, VAR_SORT, VAR_SORT_ORDER, VIOLINPLOT_SCALES } from "../constants/constants";
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export const SettingsContext = /*#__PURE__*/createContext(null);
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export const SettingsDispatchContext = /*#__PURE__*/createContext(null);
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const initialSettings = {
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selectedObs: null,
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selectedVar: null,
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selectedObsm: null,
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selectedMultiObs: [],
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selectedMultiVar: [],
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colorEncoding: null,
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labelObs: [],
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vars: [],
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sliceBy: {
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polygons: false
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polygons: {},
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controls: {
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colorScale: "Viridis",
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valueRange: [0, 1],
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range: [0, 1],
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scale: {
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dotplot: DOTPLOT_SCALES.NONE.value,
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matrixplot: MATRIXPLOT_SCALES.NONE.value,
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violinplot: VIOLINPLOT_SCALES.WIDTH.value
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},
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meanOnlyExpressed: false,
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expressionCutoff: 0.0
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varSort: {
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var: {
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sort: VAR_SORT.NONE,
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sortOrder: VAR_SORT_ORDER.ASC
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disease: {
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sort: VAR_SORT.NONE,
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sortOrder: VAR_SORT_ORDER.ASC
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}
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},
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pseudospatial: {
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maskSet: null,
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maskValues: null,
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categoricalMode: PSEUDOSPATIAL_CATEGORICAL_MODES.ACROSS.value
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}
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};
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const initializer = _ref => {
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let {
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canOverrideSettings,
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defaultSettings,
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localSettings
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} = _ref;
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return canOverrideSettings ? _.assign({}, initialSettings, defaultSettings, localSettings) : _.assign({}, initialSettings, defaultSettings);
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};
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export function SettingsProvider(_ref2) {
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let {
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dataset_url,
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defaultSettings,
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canOverrideSettings,
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children
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} = _ref2;
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const DATASET_STORAGE_KEY = "".concat(LOCAL_STORAGE_KEY, "-").concat(dataset_url);
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// Use localStorage directly instead of useLocalStorage due to unnecessary re-renders
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// https://github.com/uidotdev/usehooks/issues/157
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const localSettings = JSON.parse(localStorage.getItem(DATASET_STORAGE_KEY)) || {};
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const [settings, dispatch] = useReducer(settingsReducer, {
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canOverrideSettings,
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defaultSettings,
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localSettings
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}, initializer);
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useEffect(() => {
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if (canOverrideSettings) {
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try {
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localStorage.setItem(DATASET_STORAGE_KEY, JSON.stringify(settings));
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} catch (err) {
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if (err.code === 22 || err.code === 1014 || err.name === "QuotaExceededError" || err.name === "NS_ERROR_DOM_QUOTA_REACHED") {
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console.err("Browser storage quota exceeded");
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} else {
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console.err(err);
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}
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}
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}
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}, [DATASET_STORAGE_KEY, canOverrideSettings, settings]);
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return /*#__PURE__*/React.createElement(SettingsContext.Provider, {
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value: settings
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}, /*#__PURE__*/React.createElement(SettingsDispatchContext.Provider, {
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value: dispatch
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}, children));
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}
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export function useSettings() {
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return useContext(SettingsContext);
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}
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export function useSettingsDispatch() {
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return useContext(SettingsDispatchContext);
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}
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function settingsReducer(settings, action) {
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switch (action.type) {
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case "select.obs":
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{
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var _action$obs;
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return _objectSpread(_objectSpread({}, settings), {}, {
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selectedObs: action.obs,
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controls: _objectSpread(_objectSpread({}, settings.controls), {}, {
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range: ((_action$obs = action.obs) === null || _action$obs === void 0 ? void 0 : _action$obs.type) === OBS_TYPES.CATEGORICAL ? [0, 1] : settings.controls.range
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}),
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colorEncoding: settings.colorEncoding === COLOR_ENCODINGS.OBS && !action.obs ? null : settings.colorEncoding,
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sliceBy: _objectSpread(_objectSpread({}, settings.sliceBy), {}, {
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obs: action.obs ? settings.sliceBy.obs : false
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case "select.obsm":
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{
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return _objectSpread(_objectSpread({}, settings), {}, {
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selectedObsm: action.obsm
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case "select.var":
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{
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return _objectSpread(_objectSpread({}, settings), {}, {
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selectedVar: action.var
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return _objectSpread(_objectSpread({}, settings), {}, {
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selectedVar: action.var,
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case "select.multivar":
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{
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const vars = settings.vars.find(v => _.isEqual(v, action.var)) ? settings.vars : [...settings.vars, action.var];
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if (settings.selectedMultiVar.find(v => _.isEqual(v, action.var))) {
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return _objectSpread(_objectSpread({}, settings), {}, {
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return _objectSpread(_objectSpread({}, settings), {}, {
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selectedMultiVar: [...settings.selectedMultiVar, action.var],
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case "deselect.multivar":
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return _objectSpread(_objectSpread({}, settings), {}, {
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selectedMultiVar: settings.selectedMultiVar.filter(v => v !== action.var.name)
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case "toggle.multivar":
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{
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const inMultiVar = settings.selectedMultiVar.some(v => v.name === action.var.name);
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if (inMultiVar) {
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return _objectSpread(_objectSpread({}, settings), {}, {
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selectedMultiVar: settings.selectedMultiVar.filter(v => v.name !== action.var.name)
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});
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} else {
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return _objectSpread(_objectSpread({}, settings), {}, {
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selectedMultiVar: [...settings.selectedMultiVar, action.var]
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});
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}
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}
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case "set.colorEncoding":
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{
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return _objectSpread(_objectSpread({}, settings), {}, {
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colorEncoding: action.value
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});
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}
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case "reset.vars":
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{
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return _objectSpread(_objectSpread({}, settings), {}, {
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vars: [],
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selectedVar: null,
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selectedMultiVar: []
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});
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}
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case "reset.multiVar":
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{
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return _objectSpread(_objectSpread({}, settings), {}, {
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selectedMultiVar: [],
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colorEncoding: settings.colorEncoding === COLOR_ENCODINGS.VAR ? null : settings.colorEncoding
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});
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}
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case "reset.var":
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{
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return _objectSpread(_objectSpread({}, settings), {}, {
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selectedVar: null,
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colorEncoding: settings.colorEncoding === COLOR_ENCODINGS.VAR ? null : settings.colorEncoding
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});
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}
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case "add.var":
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{
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if (settings.vars.find(v => v.name === action.var.name)) {
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return settings;
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} else {
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return _objectSpread(_objectSpread({}, settings), {}, {
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vars: [...settings.vars, action.var]
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});
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}
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}
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case "remove.var":
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{
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var _settings$selectedVar;
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const selectedVar = ((_settings$selectedVar = settings.selectedVar) === null || _settings$selectedVar === void 0 ? void 0 : _settings$selectedVar.name) === action.var.name ? null : settings.selectedVar;
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const selectedMultiVar = settings.selectedMultiVar.filter(v => v.name !== action.var.name);
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return _objectSpread(_objectSpread({}, settings), {}, {
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vars: settings.vars.filter(a => a.name !== action.var.name),
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selectedVar: selectedVar,
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|
+
selectedMultiVar: selectedMultiVar
|
|
223
|
+
});
|
|
224
|
+
}
|
|
225
|
+
case "add.varSet.var":
|
|
226
|
+
{
|
|
227
|
+
const varSet = settings.vars.find(s => s.isSet && s.name === action.varSet.name);
|
|
228
|
+
if (!varSet) {
|
|
229
|
+
return settings;
|
|
230
|
+
}
|
|
231
|
+
if (varSet.vars.some(v => v.name === action.var.name)) {
|
|
232
|
+
return settings;
|
|
233
|
+
} else {
|
|
234
|
+
var _settings$selectedVar2;
|
|
235
|
+
const varSetVars = [...varSet.vars, action.var];
|
|
236
|
+
const vars = settings.vars.map(v => {
|
|
237
|
+
if (v.name === varSet.name) {
|
|
238
|
+
return _objectSpread(_objectSpread({}, v), {}, {
|
|
239
|
+
vars: varSetVars
|
|
240
|
+
});
|
|
241
|
+
} else {
|
|
242
|
+
return v;
|
|
243
|
+
}
|
|
244
|
+
});
|
|
245
|
+
const selectedVar = ((_settings$selectedVar2 = settings.selectedVar) === null || _settings$selectedVar2 === void 0 ? void 0 : _settings$selectedVar2.name) === action.varSet.name ? _objectSpread(_objectSpread({}, varSet), {}, {
|
|
246
|
+
vars: varSetVars
|
|
247
|
+
}) : settings.selectedVar;
|
|
248
|
+
const selectedMultiVar = settings.selectedMultiVar.map(v => {
|
|
249
|
+
if (v.name === varSet.name) {
|
|
250
|
+
return _objectSpread(_objectSpread({}, v), {}, {
|
|
251
|
+
vars: varSetVars
|
|
252
|
+
});
|
|
253
|
+
} else {
|
|
254
|
+
return v;
|
|
255
|
+
}
|
|
256
|
+
});
|
|
257
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
258
|
+
vars: vars,
|
|
259
|
+
selectedVar: selectedVar,
|
|
260
|
+
selectedMultiVar: selectedMultiVar
|
|
261
|
+
});
|
|
262
|
+
}
|
|
263
|
+
}
|
|
264
|
+
case "remove.varSet.var":
|
|
265
|
+
{
|
|
266
|
+
const varSet = settings.vars.find(s => s.isSet && s.name === action.varSet.name);
|
|
267
|
+
if (!varSet) {
|
|
268
|
+
return settings;
|
|
269
|
+
}
|
|
270
|
+
if (!varSet.vars.some(v => v.name === action.var.name)) {
|
|
271
|
+
return settings;
|
|
272
|
+
} else {
|
|
273
|
+
const varSetVars = varSet.vars.filter(v => v.name !== action.var.name);
|
|
274
|
+
const vars = settings.vars.map(v => {
|
|
275
|
+
if (v.name === varSet.name) {
|
|
276
|
+
return _objectSpread(_objectSpread({}, v), {}, {
|
|
277
|
+
vars: varSetVars
|
|
278
|
+
});
|
|
279
|
+
} else {
|
|
280
|
+
return v;
|
|
281
|
+
}
|
|
282
|
+
});
|
|
283
|
+
// Remove from selected if varSet vars is empty
|
|
284
|
+
if (!varSetVars.length) {
|
|
285
|
+
var _settings$selectedVar3;
|
|
286
|
+
const selectedVar = ((_settings$selectedVar3 = settings.selectedVar) === null || _settings$selectedVar3 === void 0 ? void 0 : _settings$selectedVar3.name) === action.varSet.name ? null : settings.selectedVar;
|
|
287
|
+
const selectedMultiVar = settings.selectedMultiVar.filter(v => v.name !== action.varSet.name);
|
|
288
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
289
|
+
vars: vars,
|
|
290
|
+
selectedVar: selectedVar,
|
|
291
|
+
selectedMultiVar: selectedMultiVar
|
|
292
|
+
});
|
|
293
|
+
} else {
|
|
294
|
+
var _settings$selectedVar4;
|
|
295
|
+
// Update selected if varSet is selected
|
|
296
|
+
const selectedVar = ((_settings$selectedVar4 = settings.selectedVar) === null || _settings$selectedVar4 === void 0 ? void 0 : _settings$selectedVar4.name) === action.varSet.name ? _objectSpread(_objectSpread({}, varSet), {}, {
|
|
297
|
+
vars: varSetVars
|
|
298
|
+
}) : settings.selectedVar;
|
|
299
|
+
const selectedMultiVar = settings.selectedMultiVar.map(v => {
|
|
300
|
+
if (v.name === varSet.name) {
|
|
301
|
+
return _objectSpread(_objectSpread({}, v), {}, {
|
|
302
|
+
vars: varSetVars
|
|
303
|
+
});
|
|
304
|
+
} else {
|
|
305
|
+
return v;
|
|
306
|
+
}
|
|
307
|
+
});
|
|
308
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
309
|
+
vars: vars,
|
|
310
|
+
selectedVar: selectedVar,
|
|
311
|
+
selectedMultiVar: selectedMultiVar
|
|
312
|
+
});
|
|
313
|
+
}
|
|
314
|
+
}
|
|
315
|
+
}
|
|
316
|
+
case "set.controls.colorScale":
|
|
317
|
+
{
|
|
318
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
319
|
+
controls: _objectSpread(_objectSpread({}, settings.controls), {}, {
|
|
320
|
+
colorScale: action.colorScale
|
|
321
|
+
})
|
|
322
|
+
});
|
|
323
|
+
}
|
|
324
|
+
case "set.controls.valueRange":
|
|
325
|
+
{
|
|
326
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
327
|
+
controls: _objectSpread(_objectSpread({}, settings.controls), {}, {
|
|
328
|
+
valueRange: action.valueRange
|
|
329
|
+
})
|
|
330
|
+
});
|
|
331
|
+
}
|
|
332
|
+
case "set.controls.range":
|
|
333
|
+
{
|
|
334
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
335
|
+
controls: _objectSpread(_objectSpread({}, settings.controls), {}, {
|
|
336
|
+
range: action.range
|
|
337
|
+
})
|
|
338
|
+
});
|
|
339
|
+
}
|
|
340
|
+
case "set.controls.colorAxis":
|
|
341
|
+
{
|
|
342
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
343
|
+
controls: _objectSpread(_objectSpread({}, settings.controls), {}, {
|
|
344
|
+
colorAxis: action.colorAxis
|
|
345
|
+
})
|
|
346
|
+
});
|
|
347
|
+
}
|
|
348
|
+
case "set.controls.colorAxis.crange":
|
|
349
|
+
{
|
|
350
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
351
|
+
controls: _objectSpread(_objectSpread({}, settings.controls), {}, {
|
|
352
|
+
colorAxis: _objectSpread(_objectSpread({}, settings.controls.colorAxis), {}, {
|
|
353
|
+
cmin: action.cmin,
|
|
354
|
+
cmax: action.cmax
|
|
355
|
+
})
|
|
356
|
+
})
|
|
357
|
+
});
|
|
358
|
+
}
|
|
359
|
+
case "set.controls.colorAxis.cmin":
|
|
360
|
+
{
|
|
361
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
362
|
+
controls: _objectSpread(_objectSpread({}, settings.controls), {}, {
|
|
363
|
+
colorAxis: _objectSpread(_objectSpread({}, settings.controls.colorAxis), {}, {
|
|
364
|
+
cmin: action.cmin
|
|
365
|
+
})
|
|
366
|
+
})
|
|
367
|
+
});
|
|
368
|
+
}
|
|
369
|
+
case "set.controls.colorAxis.cmax":
|
|
370
|
+
{
|
|
371
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
372
|
+
controls: _objectSpread(_objectSpread({}, settings.controls), {}, {
|
|
373
|
+
colorAxis: _objectSpread(_objectSpread({}, settings.controls.colorAxis), {}, {
|
|
374
|
+
cmax: action.cmax
|
|
375
|
+
})
|
|
376
|
+
})
|
|
377
|
+
});
|
|
378
|
+
}
|
|
379
|
+
case "set.controls.scale":
|
|
380
|
+
{
|
|
381
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
382
|
+
controls: _objectSpread(_objectSpread({}, settings.controls), {}, {
|
|
383
|
+
scale: _objectSpread(_objectSpread({}, settings.controls.scale), {}, {
|
|
384
|
+
[action.plot]: action.scale
|
|
385
|
+
})
|
|
386
|
+
})
|
|
387
|
+
});
|
|
388
|
+
}
|
|
389
|
+
case "set.controls.meanOnlyExpressed":
|
|
390
|
+
{
|
|
391
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
392
|
+
controls: _objectSpread(_objectSpread({}, settings.controls), {}, {
|
|
393
|
+
meanOnlyExpressed: action.meanOnlyExpressed
|
|
394
|
+
})
|
|
395
|
+
});
|
|
396
|
+
}
|
|
397
|
+
case "set.controls.expressionCutoff":
|
|
398
|
+
{
|
|
399
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
400
|
+
controls: _objectSpread(_objectSpread({}, settings.controls), {}, {
|
|
401
|
+
expressionCutoff: action.expressionCutoff
|
|
402
|
+
})
|
|
403
|
+
});
|
|
404
|
+
}
|
|
405
|
+
case "toggle.slice.obs":
|
|
406
|
+
{
|
|
407
|
+
if (_.isEqual(settings.selectedObs, action.obs)) {
|
|
408
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
409
|
+
sliceBy: _objectSpread(_objectSpread({}, settings.sliceBy), {}, {
|
|
410
|
+
obs: !settings.sliceBy.obs
|
|
411
|
+
})
|
|
412
|
+
});
|
|
413
|
+
} else {
|
|
414
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
415
|
+
selectedObs: action.obs,
|
|
416
|
+
sliceBy: _objectSpread(_objectSpread({}, settings.sliceBy), {}, {
|
|
417
|
+
obs: true
|
|
418
|
+
})
|
|
419
|
+
});
|
|
420
|
+
}
|
|
421
|
+
}
|
|
422
|
+
case "toggle.slice.polygons":
|
|
423
|
+
{
|
|
424
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
425
|
+
sliceBy: _objectSpread(_objectSpread({}, settings.sliceBy), {}, {
|
|
426
|
+
polygons: !settings.sliceBy.polygons
|
|
427
|
+
})
|
|
428
|
+
});
|
|
429
|
+
}
|
|
430
|
+
case "disable.slice.polygons":
|
|
431
|
+
{
|
|
432
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
433
|
+
sliceBy: _objectSpread(_objectSpread({}, settings.sliceBy), {}, {
|
|
434
|
+
polygons: false
|
|
435
|
+
})
|
|
436
|
+
});
|
|
437
|
+
}
|
|
438
|
+
case "add.label.obs":
|
|
439
|
+
{
|
|
440
|
+
if (settings.labelObs.find(i => _.isEqual(i, action.obs))) {
|
|
441
|
+
return settings;
|
|
442
|
+
} else {
|
|
443
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
444
|
+
labelObs: [...settings.labelObs, action.obs]
|
|
445
|
+
});
|
|
446
|
+
}
|
|
447
|
+
}
|
|
448
|
+
case "remove.label.obs":
|
|
449
|
+
{
|
|
450
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
451
|
+
labelObs: settings.labelObs.filter(a => a.name !== action.obsName)
|
|
452
|
+
});
|
|
453
|
+
}
|
|
454
|
+
case "reset.label.obs":
|
|
455
|
+
{
|
|
456
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
457
|
+
labelObs: []
|
|
458
|
+
});
|
|
459
|
+
}
|
|
460
|
+
case "set.varSort":
|
|
461
|
+
{
|
|
462
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
463
|
+
varSort: _objectSpread(_objectSpread({}, settings.varSort), {}, {
|
|
464
|
+
[action.var]: {
|
|
465
|
+
sort: action.sort,
|
|
466
|
+
sortOrder: action.sortOrder
|
|
467
|
+
}
|
|
468
|
+
})
|
|
469
|
+
});
|
|
470
|
+
}
|
|
471
|
+
case "set.varSort.sort":
|
|
472
|
+
{
|
|
473
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
474
|
+
varSort: _objectSpread(_objectSpread({}, settings.varSort), {}, {
|
|
475
|
+
[action.var]: _objectSpread(_objectSpread({}, settings.varSort[action.var]), {}, {
|
|
476
|
+
sort: action.sort
|
|
477
|
+
})
|
|
478
|
+
})
|
|
479
|
+
});
|
|
480
|
+
}
|
|
481
|
+
case "set.varSort.sortOrder":
|
|
482
|
+
{
|
|
483
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
484
|
+
varSort: _objectSpread(_objectSpread({}, settings.varSort), {}, {
|
|
485
|
+
[action.var]: _objectSpread(_objectSpread({}, settings.varSort[action.var]), {}, {
|
|
486
|
+
sortOrder: action.sortOrder
|
|
487
|
+
})
|
|
488
|
+
})
|
|
489
|
+
});
|
|
490
|
+
}
|
|
491
|
+
case "set.polygons":
|
|
492
|
+
{
|
|
493
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
494
|
+
polygons: _objectSpread(_objectSpread({}, settings.polygons), {}, {
|
|
495
|
+
[action.obsm]: action.polygons
|
|
496
|
+
})
|
|
497
|
+
});
|
|
498
|
+
}
|
|
499
|
+
case "set.pseudospatial.maskSet":
|
|
500
|
+
{
|
|
501
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
502
|
+
pseudospatial: _objectSpread(_objectSpread({}, settings.pseudospatial), {}, {
|
|
503
|
+
maskSet: action.maskSet
|
|
504
|
+
})
|
|
505
|
+
});
|
|
506
|
+
}
|
|
507
|
+
case "set.pseudospatial.maskValues":
|
|
508
|
+
{
|
|
509
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
510
|
+
pseudospatial: _objectSpread(_objectSpread({}, settings.pseudospatial), {}, {
|
|
511
|
+
maskValues: action.maskValues
|
|
512
|
+
})
|
|
513
|
+
});
|
|
514
|
+
}
|
|
515
|
+
case "set.pseudospatial.categoricalMode":
|
|
516
|
+
{
|
|
517
|
+
return _objectSpread(_objectSpread({}, settings), {}, {
|
|
518
|
+
pseudospatial: _objectSpread(_objectSpread({}, settings.pseudospatial), {}, {
|
|
519
|
+
categoricalMode: action.categoricalMode
|
|
520
|
+
})
|
|
521
|
+
});
|
|
522
|
+
}
|
|
523
|
+
default:
|
|
524
|
+
{
|
|
525
|
+
throw Error("Unknown action: " + action.type);
|
|
526
|
+
}
|
|
527
|
+
}
|
|
528
|
+
}
|
|
@@ -1,11 +1,11 @@
|
|
|
1
1
|
import { useCallback } from "react";
|
|
2
2
|
import { COLORSCALES } from "../constants/colorscales";
|
|
3
|
-
import {
|
|
3
|
+
import { useSettings } from "../context/SettingsContext";
|
|
4
4
|
const GRAY = [214, 212, 212];
|
|
5
5
|
const parseHexColor = color => {
|
|
6
|
-
const r = parseInt(color
|
|
7
|
-
const g = parseInt(color
|
|
8
|
-
const b = parseInt(color
|
|
6
|
+
const r = parseInt(color === null || color === void 0 ? void 0 : color.substring(1, 3), 16);
|
|
7
|
+
const g = parseInt(color === null || color === void 0 ? void 0 : color.substring(3, 5), 16);
|
|
8
|
+
const b = parseInt(color === null || color === void 0 ? void 0 : color.substring(5, 7), 16);
|
|
9
9
|
return [r, g, b];
|
|
10
10
|
};
|
|
11
11
|
const interpolateColor = (color1, color2, factor) => {
|
|
@@ -34,7 +34,7 @@ export const rgbToHex = color => {
|
|
|
34
34
|
return "#" + ((1 << 24) + (r << 16) + (g << 8) + b).toString(16).slice(1);
|
|
35
35
|
};
|
|
36
36
|
export const useColor = () => {
|
|
37
|
-
const
|
|
37
|
+
const settings = useSettings();
|
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38
38
|
const getColor = useCallback(_ref => {
|
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39
39
|
let {
|
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40
40
|
value,
|
|
@@ -44,10 +44,10 @@ export const useColor = () => {
|
|
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44
44
|
alpha = 0.75,
|
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45
45
|
gray = 0.95
|
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46
46
|
} = {},
|
|
47
|
-
colorEncoding =
|
|
47
|
+
colorEncoding = settings.colorEncoding,
|
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48
48
|
colorscale = null
|
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49
49
|
} = _ref;
|
|
50
|
-
const colormap = colorscale || COLORSCALES[categorical ? "Accent" :
|
|
50
|
+
const colormap = colorscale || COLORSCALES[categorical ? "Accent" : settings.controls.colorScale];
|
|
51
51
|
if (colorEncoding) {
|
|
52
52
|
if (grayOut) {
|
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53
53
|
// Mix color with gray manually instead of chroma.mix to get better performance with deck.gl
|
|
@@ -59,7 +59,7 @@ export const useColor = () => {
|
|
|
59
59
|
} else {
|
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60
60
|
return null;
|
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61
61
|
}
|
|
62
|
-
}, [
|
|
62
|
+
}, [settings.colorEncoding, settings.controls.colorScale]);
|
|
63
63
|
return {
|
|
64
64
|
getColor
|
|
65
65
|
};
|
|
@@ -1,3 +1,8 @@
|
|
|
1
|
+
function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
|
|
2
|
+
function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
|
|
3
|
+
function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
|
|
4
|
+
function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
|
|
5
|
+
function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
|
|
1
6
|
import { useCallback } from "react";
|
|
2
7
|
import { useQueries, useQuery } from "@tanstack/react-query";
|
|
3
8
|
import { ArrayNotFoundError, GroupNotFoundError, openArray } from "zarr";
|
|
@@ -9,7 +14,7 @@ export const GET_OPTIONS = {
|
|
|
9
14
|
progress,
|
|
10
15
|
queueSize
|
|
11
16
|
} = _ref;
|
|
12
|
-
console.debug(
|
|
17
|
+
console.debug("".concat(progress / queueSize * 100, "% complete."));
|
|
13
18
|
} // callback executed after each request
|
|
14
19
|
};
|
|
15
20
|
export class ZarrHelper {
|
|
@@ -38,27 +43,26 @@ const fetchDataFromZarr = async (url, path, s, opts) => {
|
|
|
38
43
|
export const useZarr = function (_ref2) {
|
|
39
44
|
let {
|
|
40
45
|
url,
|
|
41
|
-
path
|
|
46
|
+
path,
|
|
47
|
+
s = null
|
|
42
48
|
} = _ref2;
|
|
43
|
-
let
|
|
44
|
-
let
|
|
45
|
-
let opts = arguments.length > 3 && arguments[3] !== undefined ? arguments[3] : {};
|
|
49
|
+
let options = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : GET_OPTIONS;
|
|
50
|
+
let opts = arguments.length > 2 && arguments[2] !== undefined ? arguments[2] : {};
|
|
46
51
|
const {
|
|
47
52
|
data = null,
|
|
48
53
|
isLoading: isPending = false,
|
|
49
54
|
error: serverError = null
|
|
50
|
-
} = useQuery({
|
|
55
|
+
} = useQuery(_objectSpread({
|
|
51
56
|
queryKey: ["zarr", url, path, s],
|
|
52
57
|
queryFn: () => fetchDataFromZarr(url, path, s, options),
|
|
53
58
|
retry: (failureCount, _ref3) => {
|
|
54
59
|
let {
|
|
55
60
|
error
|
|
56
61
|
} = _ref3;
|
|
57
|
-
if ([400, 401, 403, 404, 422].includes(error
|
|
62
|
+
if ([400, 401, 403, 404, 422].includes(error === null || error === void 0 ? void 0 : error.status)) return false;
|
|
58
63
|
return failureCount < 3;
|
|
59
|
-
}
|
|
60
|
-
|
|
61
|
-
});
|
|
64
|
+
}
|
|
65
|
+
}, opts));
|
|
62
66
|
return {
|
|
63
67
|
data,
|
|
64
68
|
isPending,
|
|
@@ -69,7 +73,7 @@ const aggregateData = (inputs, data) => {
|
|
|
69
73
|
const dataObject = {};
|
|
70
74
|
inputs.forEach((input, index) => {
|
|
71
75
|
const key = input.key;
|
|
72
|
-
dataObject[key] = data
|
|
76
|
+
dataObject[key] = data === null || data === void 0 ? void 0 : data[index];
|
|
73
77
|
});
|
|
74
78
|
return dataObject;
|
|
75
79
|
};
|
|
@@ -89,18 +93,17 @@ export const useMultipleZarr = function (inputs) {
|
|
|
89
93
|
isLoading: isPending = false,
|
|
90
94
|
serverError = null
|
|
91
95
|
} = useQueries({
|
|
92
|
-
queries: inputs.map(input => ({
|
|
96
|
+
queries: inputs.map(input => _objectSpread({
|
|
93
97
|
queryKey: ["zarr", input.url, input.path, input.s],
|
|
94
98
|
queryFn: () => fetchDataFromZarr(input.url, input.path, input.s, options),
|
|
95
99
|
retry: (failureCount, _ref4) => {
|
|
96
100
|
let {
|
|
97
101
|
error
|
|
98
102
|
} = _ref4;
|
|
99
|
-
if ([400, 401, 403, 404, 422].includes(error
|
|
103
|
+
if ([400, 401, 403, 404, 422].includes(error === null || error === void 0 ? void 0 : error.status)) return false;
|
|
100
104
|
return failureCount < 3;
|
|
101
|
-
}
|
|
102
|
-
|
|
103
|
-
})),
|
|
105
|
+
}
|
|
106
|
+
}, opts)),
|
|
104
107
|
combine
|
|
105
108
|
});
|
|
106
109
|
return {
|