@haniffalab/cherita-react 1.2.0-dev.2025-05-21.e8f5ce54 → 1.2.0-dev.2025-05-21.e57ef5f2

package/dist/esm/components/pseudospatial/Pseudospatial.js

@@ -1,3 +1,8 @@
+function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
+function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
+function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
+function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
+function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
 import React, { useCallback, useEffect, useMemo, useRef, useState } from "react";
 import { library } from "@fortawesome/fontawesome-svg-core";
 import { faSliders } from "@fortawesome/free-solid-svg-icons";
@@ -15,6 +20,7 @@ import { LoadingSpinner } from "../../utils/LoadingIndicators";
 import { useDebouncedFetch } from "../../utils/requests";
 library.add(faSliders);
 function usePseudospatialData(plotType) {
+  var _settings$selectedVar5, _settings$selectedVar6, _settings$selectedVar7, _settings$selectedVar8;
   const ENDPOINT = "pseudospatial";
   const dataset = useDataset();
   const settings = useSettings();
@@ -35,40 +41,49 @@ function usePseudospatialData(plotType) {
   }, [dataset.url, settings.pseudospatial.maskSet, settings.pseudospatial.maskValues, dataset.varNamesCol, isSliced, obsIndices]);
   const getPlotParams = useCallback(() => {
     if (plotType === PLOT_TYPES.GENE) {
-      return {
-        varKey: settings.selectedVar?.isSet ? {
-          name: settings.selectedVar?.name,
-          indices: settings.selectedVar?.vars.map(v => v.index)
-        } : settings.selectedVar?.index,
-        ...(settings.sliceBy.obs ? {
-          obsCol: settings.selectedObs,
-          obsValues: !settings.selectedObs?.omit.length ? null : _.difference(_.values(settings.selectedObs?.codes), settings.selectedObs?.omit).map(c => settings.selectedObs?.codesMap[c])
-        } : {})
-      };
+      var _settings$selectedVar, _settings$selectedVar2, _settings$selectedVar3, _settings$selectedVar4, _settings$selectedObs, _settings$selectedObs2, _settings$selectedObs3;
+      return _objectSpread({
+        varKey: (_settings$selectedVar = settings.selectedVar) !== null && _settings$selectedVar !== void 0 && _settings$selectedVar.isSet ? {
+          name: (_settings$selectedVar2 = settings.selectedVar) === null || _settings$selectedVar2 === void 0 ? void 0 : _settings$selectedVar2.name,
+          indices: (_settings$selectedVar3 = settings.selectedVar) === null || _settings$selectedVar3 === void 0 ? void 0 : _settings$selectedVar3.vars.map(v => v.index)
+        } : (_settings$selectedVar4 = settings.selectedVar) === null || _settings$selectedVar4 === void 0 ? void 0 : _settings$selectedVar4.index
+      }, settings.sliceBy.obs ? {
+        obsCol: settings.selectedObs,
+        obsValues: !((_settings$selectedObs = settings.selectedObs) !== null && _settings$selectedObs !== void 0 && _settings$selectedObs.omit.length) ? null : _.difference(_.values((_settings$selectedObs2 = settings.selectedObs) === null || _settings$selectedObs2 === void 0 ? void 0 : _settings$selectedObs2.codes), (_settings$selectedObs3 = settings.selectedObs) === null || _settings$selectedObs3 === void 0 ? void 0 : _settings$selectedObs3.omit).map(c => {
+          var _settings$selectedObs4;
+          return (_settings$selectedObs4 = settings.selectedObs) === null || _settings$selectedObs4 === void 0 ? void 0 : _settings$selectedObs4.codesMap[c];
+        })
+      } : {});
     } else if (plotType === PLOT_TYPES.CATEGORICAL) {
+      var _settings$selectedObs5, _settings$selectedObs6, _settings$selectedObs7;
       return {
         obsCol: settings.selectedObs,
-        obsValues: !settings.selectedObs?.omit.length ? null : _.difference(_.values(settings.selectedObs?.codes), settings.selectedObs?.omit).map(c => settings.selectedObs?.codesMap[c]),
+        obsValues: !((_settings$selectedObs5 = settings.selectedObs) !== null && _settings$selectedObs5 !== void 0 && _settings$selectedObs5.omit.length) ? null : _.difference(_.values((_settings$selectedObs6 = settings.selectedObs) === null || _settings$selectedObs6 === void 0 ? void 0 : _settings$selectedObs6.codes), (_settings$selectedObs7 = settings.selectedObs) === null || _settings$selectedObs7 === void 0 ? void 0 : _settings$selectedObs7.omit).map(c => {
+          var _settings$selectedObs8;
+          return (_settings$selectedObs8 = settings.selectedObs) === null || _settings$selectedObs8 === void 0 ? void 0 : _settings$selectedObs8.codesMap[c];
+        }),
         mode: settings.pseudospatial.categoricalMode
       };
     } else if (plotType === "continuous") {
+      var _settings$selectedObs9, _settings$selectedObs0, _settings$selectedObs1;
       return {
         obsCol: settings.selectedObs,
-        obsValues: !settings.selectedObs?.omit.length ? null : _.difference(_.values(settings.selectedObs?.codes), settings.selectedObs?.omit).map(c => settings.selectedObs?.codesMap[c])
+        obsValues: !((_settings$selectedObs9 = settings.selectedObs) !== null && _settings$selectedObs9 !== void 0 && _settings$selectedObs9.omit.length) ? null : _.difference(_.values((_settings$selectedObs0 = settings.selectedObs) === null || _settings$selectedObs0 === void 0 ? void 0 : _settings$selectedObs0.codes), (_settings$selectedObs1 = settings.selectedObs) === null || _settings$selectedObs1 === void 0 ? void 0 : _settings$selectedObs1.omit).map(c => {
+          var _settings$selectedObs10;
+          return (_settings$selectedObs10 = settings.selectedObs) === null || _settings$selectedObs10 === void 0 ? void 0 : _settings$selectedObs10.codesMap[c];
+        })
       };
     }
-  }, [settings.pseudospatial.categoricalMode, settings.selectedObs, settings.selectedVar?.index, settings.selectedVar?.isSet, settings.selectedVar?.name, settings.selectedVar?.vars, settings.sliceBy.obs, plotType]);
+  }, [settings.pseudospatial.categoricalMode, settings.selectedObs, (_settings$selectedVar5 = settings.selectedVar) === null || _settings$selectedVar5 === void 0 ? void 0 : _settings$selectedVar5.index, (_settings$selectedVar6 = settings.selectedVar) === null || _settings$selectedVar6 === void 0 ? void 0 : _settings$selectedVar6.isSet, (_settings$selectedVar7 = settings.selectedVar) === null || _settings$selectedVar7 === void 0 ? void 0 : _settings$selectedVar7.name, (_settings$selectedVar8 = settings.selectedVar) === null || _settings$selectedVar8 === void 0 ? void 0 : _settings$selectedVar8.vars, settings.sliceBy.obs, plotType]);
   const params = useMemo(() => {
-    return {
-      ...baseParams,
-      ...getPlotParams()
-    };
+    return _objectSpread(_objectSpread({}, baseParams), getPlotParams());
   }, [baseParams, getPlotParams]);
   return useDebouncedFetch(ENDPOINT + "/" + plotType, params, 500, {
     enabled: !!plotType && !!settings.pseudospatial.maskSet
   });
 }
 export function Pseudospatial(_ref) {
+  var _settings$selectedObs14, _layout$coloraxis3, _layout$coloraxis4;
   let {
     showLegend = true,
     sharedScaleRange = false,
@@ -85,21 +100,21 @@ export function Pseudospatial(_ref) {
   } = useColor();
   const colorscale = useRef(settings.controls.colorScale);
   useEffect(() => {
-    setPlotType(settings.colorEncoding === COLOR_ENCODINGS.VAR ? PLOT_TYPES.GENE : settings.selectedObs?.type === OBS_TYPES.CATEGORICAL || settings.selectedObs?.type === OBS_TYPES.BOOLEAN ? PLOT_TYPES.CATEGORICAL : settings.selectedObs?.type === OBS_TYPES.CONTINUOUS ? PLOT_TYPES.CONTINUOUS : PLOT_TYPES.MASKS);
-  }, [settings.colorEncoding, settings.selectedObs?.type, setPlotType]);
+    var _settings$selectedObs11, _settings$selectedObs12, _settings$selectedObs13;
+    setPlotType(settings.colorEncoding === COLOR_ENCODINGS.VAR ? PLOT_TYPES.GENE : ((_settings$selectedObs11 = settings.selectedObs) === null || _settings$selectedObs11 === void 0 ? void 0 : _settings$selectedObs11.type) === OBS_TYPES.CATEGORICAL || ((_settings$selectedObs12 = settings.selectedObs) === null || _settings$selectedObs12 === void 0 ? void 0 : _settings$selectedObs12.type) === OBS_TYPES.BOOLEAN ? PLOT_TYPES.CATEGORICAL : ((_settings$selectedObs13 = settings.selectedObs) === null || _settings$selectedObs13 === void 0 ? void 0 : _settings$selectedObs13.type) === OBS_TYPES.CONTINUOUS ? PLOT_TYPES.CONTINUOUS : PLOT_TYPES.MASKS);
+  }, [settings.colorEncoding, (_settings$selectedObs14 = settings.selectedObs) === null || _settings$selectedObs14 === void 0 ? void 0 : _settings$selectedObs14.type, setPlotType]);
   const updateColorscale = useCallback(colorscale => {
     setLayout(l => {
-      return {
-        ...l,
-        coloraxis: {
-          ...l.coloraxis,
+      return _objectSpread(_objectSpread({}, l), {}, {
+        coloraxis: _objectSpread(_objectSpread({}, l.coloraxis), {}, {
           colorscale: colorscale
-        }
-      };
+        })
+      });
     });
     setData(d => {
-      const min = layout?.coloraxis?.cmin;
-      const max = layout?.coloraxis?.cmax;
+      var _layout$coloraxis, _layout$coloraxis2;
+      const min = layout === null || layout === void 0 || (_layout$coloraxis = layout.coloraxis) === null || _layout$coloraxis === void 0 ? void 0 : _layout$coloraxis.cmin;
+      const max = layout === null || layout === void 0 || (_layout$coloraxis2 = layout.coloraxis) === null || _layout$coloraxis2 === void 0 ? void 0 : _layout$coloraxis2.cmax;
       return _.map(d, trace => {
         const v = trace.meta.value;
         if (v === null) {
@@ -108,17 +123,15 @@ export function Pseudospatial(_ref) {
         const color = rgbToHex(getColor({
           value: (v - min) / (max - min)
         }));
-        return {
-          ...trace,
+        return _objectSpread(_objectSpread({}, trace), {}, {
           fillcolor: color,
-          line: {
-            ...trace.line,
+          line: _objectSpread(_objectSpread({}, trace.line), {}, {
             color: color
-          }
-        };
+          })
+        });
       });
     });
-  }, [getColor, layout?.coloraxis?.cmax, layout?.coloraxis?.cmin]);
+  }, [getColor, layout === null || layout === void 0 || (_layout$coloraxis3 = layout.coloraxis) === null || _layout$coloraxis3 === void 0 ? void 0 : _layout$coloraxis3.cmax, layout === null || layout === void 0 || (_layout$coloraxis4 = layout.coloraxis) === null || _layout$coloraxis4 === void 0 ? void 0 : _layout$coloraxis4.cmin]);
   const {
     fetchedData,
     isPending,
@@ -153,40 +166,36 @@ export function Pseudospatial(_ref) {
           const color = rgbToHex(getColor({
             value: (v - min) / (max - min)
           }));
-          return {
-            ...trace,
+          return _objectSpread(_objectSpread({}, trace), {}, {
             fillcolor: color,
-            line: {
-              ...trace.line,
+            line: _objectSpread(_objectSpread({}, trace.line), {}, {
               color: color
-            }
-          };
+            })
+          });
         });
       });
       setLayout(l => {
-        return {
-          ...l,
-          coloraxis: {
-            ...l.coloraxis,
+        return _objectSpread(_objectSpread({}, l), {}, {
+          coloraxis: _objectSpread(_objectSpread({}, l.coloraxis), {}, {
             cmin: min,
             cmax: max
-          }
-        };
+          })
+        });
       });
     }
   }, [settings.controls.range, settings.controls.valueMax, settings.controls.valueMin, settings.controls.valueRange, getColor, sharedScaleRange]);
   const hasSelections = !!plotType && !!settings.pseudospatial.maskSet;
   const faSlidersPath = faSliders.icon[4];
   if (!serverError) {
+    var _layout$coloraxis5, _layout$coloraxis6;
     return /*#__PURE__*/React.createElement("div", {
       className: "cherita-pseudospatial"
     }, /*#__PURE__*/React.createElement(React.Fragment, null, hasSelections && isPending && /*#__PURE__*/React.createElement(LoadingSpinner, null), hasSelections && /*#__PURE__*/React.createElement(Plot, {
       data: data,
-      layout: {
-        ...layout,
+      layout: _objectSpread(_objectSpread({}, layout), {}, {
         autosize: true,
         height: height
-      },
+      }),
       useResizeHandler: true,
       className: "cherita-pseudospatial-plot",
       config: {
@@ -205,8 +214,8 @@ export function Pseudospatial(_ref) {
         }]
       }
     }), hasSelections && showLegend && /*#__PURE__*/React.createElement(Legend, {
-      min: layout?.coloraxis?.cmin,
-      max: layout?.coloraxis?.cmax,
+      min: layout === null || layout === void 0 || (_layout$coloraxis5 = layout.coloraxis) === null || _layout$coloraxis5 === void 0 ? void 0 : _layout$coloraxis5.cmin,
+      max: layout === null || layout === void 0 || (_layout$coloraxis6 = layout.coloraxis) === null || _layout$coloraxis6 === void 0 ? void 0 : _layout$coloraxis6.cmax,
       addText: plotType === PLOT_TYPES.GENE ? " - Mean expression" : plotType === PLOT_TYPES.CATEGORICAL ? " - %" : plotType === PLOT_TYPES.CONTINUOUS ? " - Mean value" : ""
     })));
   } else {

package/dist/esm/components/pseudospatial/PseudospatialToolbar.js

@@ -1,3 +1,8 @@
+function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
+function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
+function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
+function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
+function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
 import React, { useEffect, useState } from "react";
 import _ from "lodash";
 import { ButtonGroup, Dropdown, Form } from "react-bootstrap";
@@ -26,6 +31,7 @@ function CategoricalMode() {
   }, _.capitalize(mode.name)), /*#__PURE__*/React.createElement(Dropdown.Menu, null, modeList));
 }
 function MaskSet() {
+  var _settings$pseudospati5, _settings$pseudospati6, _maskSets$settings$ps2, _settings$pseudospati7, _settings$pseudospati8, _maskSets$settings$ps3, _settings$pseudospati9;
   const ENDPOINT = "masks";
   const dataset = useDataset();
   const settings = useSettings();
@@ -36,10 +42,9 @@ function MaskSet() {
   });
   useEffect(() => {
     setParams(p => {
-      return {
-        ...p,
+      return _objectSpread(_objectSpread({}, p), {}, {
         url: dataset.url
-      };
+      });
     });
   }, [dataset.url]);
   const {
@@ -65,9 +70,10 @@ function MaskSet() {
     }
   }, _.capitalize(key)));
   const handleMaskChange = mask => {
-    let newMasks = settings.pseudospatial.maskValues || maskSets?.[settings.pseudospatial?.maskSet];
+    var _settings$pseudospati, _settings$pseudospati2;
+    let newMasks = settings.pseudospatial.maskValues || (maskSets === null || maskSets === void 0 ? void 0 : maskSets[(_settings$pseudospati = settings.pseudospatial) === null || _settings$pseudospati === void 0 ? void 0 : _settings$pseudospati.maskSet]);
     newMasks = newMasks.includes(mask) ? newMasks.filter(m => m !== mask) : [...newMasks, mask];
-    if (!_.difference(maskSets?.[settings.pseudospatial?.maskSet], newMasks).length) {
+    if (!_.difference(maskSets === null || maskSets === void 0 ? void 0 : maskSets[(_settings$pseudospati2 = settings.pseudospatial) === null || _settings$pseudospati2 === void 0 ? void 0 : _settings$pseudospati2.maskSet], newMasks).length) {
       newMasks = null;
     }
     dispatch({
@@ -76,7 +82,8 @@ function MaskSet() {
     });
   };
   const toggleMasks = () => {
-    if (!settings.pseudospatial.maskValues || settings.pseudospatial.maskValues?.length === maskSets?.[settings.pseudospatial?.maskSet]?.length) {
+    var _settings$pseudospati3, _maskSets$settings$ps, _settings$pseudospati4;
+    if (!settings.pseudospatial.maskValues || ((_settings$pseudospati3 = settings.pseudospatial.maskValues) === null || _settings$pseudospati3 === void 0 ? void 0 : _settings$pseudospati3.length) === (maskSets === null || maskSets === void 0 || (_maskSets$settings$ps = maskSets[(_settings$pseudospati4 = settings.pseudospatial) === null || _settings$pseudospati4 === void 0 ? void 0 : _settings$pseudospati4.maskSet]) === null || _maskSets$settings$ps === void 0 ? void 0 : _maskSets$settings$ps.length)) {
       dispatch({
         type: "set.pseudospatial.maskValues",
         maskValues: []
@@ -88,7 +95,7 @@ function MaskSet() {
       });
     }
   };
-  const masksList = _.map(maskSets?.[settings.pseudospatial?.maskSet], mask => /*#__PURE__*/React.createElement(Dropdown.ItemText, {
+  const masksList = _.map(maskSets === null || maskSets === void 0 ? void 0 : maskSets[(_settings$pseudospati5 = settings.pseudospatial) === null || _settings$pseudospati5 === void 0 ? void 0 : _settings$pseudospati5.maskSet], mask => /*#__PURE__*/React.createElement(Dropdown.ItemText, {
     key: mask
   }, /*#__PURE__*/React.createElement(Form.Check, {
     type: "checkbox",
@@ -96,8 +103,8 @@ function MaskSet() {
     checked: !settings.pseudospatial.maskValues || settings.pseudospatial.maskValues.includes(mask),
     onChange: () => handleMaskChange(mask)
   })));
-  const nMasks = settings.pseudospatial.maskValues ? settings.pseudospatial.maskValues?.length : maskSets?.[settings.pseudospatial?.maskSet]?.length || "No";
-  const toggleAllChecked = !settings.pseudospatial.maskValues || settings.pseudospatial.maskValues?.length === maskSets?.[settings.pseudospatial?.maskSet]?.length;
+  const nMasks = settings.pseudospatial.maskValues ? (_settings$pseudospati6 = settings.pseudospatial.maskValues) === null || _settings$pseudospati6 === void 0 ? void 0 : _settings$pseudospati6.length : (maskSets === null || maskSets === void 0 || (_maskSets$settings$ps2 = maskSets[(_settings$pseudospati7 = settings.pseudospatial) === null || _settings$pseudospati7 === void 0 ? void 0 : _settings$pseudospati7.maskSet]) === null || _maskSets$settings$ps2 === void 0 ? void 0 : _maskSets$settings$ps2.length) || "No";
+  const toggleAllChecked = !settings.pseudospatial.maskValues || ((_settings$pseudospati8 = settings.pseudospatial.maskValues) === null || _settings$pseudospati8 === void 0 ? void 0 : _settings$pseudospati8.length) === (maskSets === null || maskSets === void 0 || (_maskSets$settings$ps3 = maskSets[(_settings$pseudospati9 = settings.pseudospatial) === null || _settings$pseudospati9 === void 0 ? void 0 : _settings$pseudospati9.maskSet]) === null || _maskSets$settings$ps3 === void 0 ? void 0 : _maskSets$settings$ps3.length);
   return /*#__PURE__*/React.createElement(React.Fragment, null, /*#__PURE__*/React.createElement(Dropdown, null, /*#__PURE__*/React.createElement(Dropdown.Toggle, {
     variant: "light"
   }, _.capitalize(settings.pseudospatial.maskSet || "Select a mask set")), /*#__PURE__*/React.createElement(Dropdown.Menu, null, /*#__PURE__*/React.createElement(Dropdown.Header, null, "Mask set"), maskSetList)), /*#__PURE__*/React.createElement(Dropdown, null, /*#__PURE__*/React.createElement(Dropdown.Toggle, {

package/dist/esm/components/scatterplot/Scatterplot.js

@@ -1,3 +1,8 @@
+function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
+function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
+function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
+function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
+function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
 import React, { useCallback, useDeferredValue, useEffect, useMemo, useRef, useState } from "react";
 import { ScatterplotLayer } from "@deck.gl/layers";
 import { DeckGL } from "@deck.gl/react";
@@ -29,6 +34,7 @@ const INITIAL_VIEW_STATE = {
   bearing: 0
 };
 export function Scatterplot(_ref) {
+  var _settings$selectedObs3, _features$features2, _obsmData$serverError, _xData$serverError, _obsData$serverError, _labelObsData$serverE, _settings$selectedVar, _settings$selectedObs4, _obsmData$data;
   let {
     radius = 30,
     setShowObs,
@@ -73,12 +79,12 @@ export function Scatterplot(_ref) {
 
   useEffect(() => {
     if (!obsmData.isPending && !obsmData.serverError) {
+      var _deckRef$current, _deckRef$current2;
       setIsRendering(true);
       setData(d => {
-        return {
-          ...d,
+        return _objectSpread(_objectSpread({}, d), {}, {
           positions: obsmData.data
-        };
+        });
       });
       const mapHelper = new MapHelper();
       const {
@@ -86,35 +92,34 @@ export function Scatterplot(_ref) {
         longitude,
         zoom
       } = mapHelper.fitBounds(obsmData.data, {
-        width: deckRef?.current?.deck?.width,
-        height: deckRef?.current?.deck?.height
+        width: deckRef === null || deckRef === void 0 || (_deckRef$current = deckRef.current) === null || _deckRef$current === void 0 || (_deckRef$current = _deckRef$current.deck) === null || _deckRef$current === void 0 ? void 0 : _deckRef$current.width,
+        height: deckRef === null || deckRef === void 0 || (_deckRef$current2 = deckRef.current) === null || _deckRef$current2 === void 0 || (_deckRef$current2 = _deckRef$current2.deck) === null || _deckRef$current2 === void 0 ? void 0 : _deckRef$current2.height
       });
       setViewState(v => {
-        return {
-          ...v,
+        return _objectSpread(_objectSpread({}, v), {}, {
           longitude: longitude,
           latitude: latitude,
           zoom: zoom
-        };
+        });
       });
     } else if (!obsmData.isPending && obsmData.serverError) {
       setIsRendering(true);
       setData(d => {
-        return {
-          ...d,
+        return _objectSpread(_objectSpread({}, d), {}, {
           positions: []
-        };
+        });
       });
     }
   }, [settings.selectedObsm, obsmData.data, obsmData.isPending, obsmData.serverError]);
   const getBounds = useCallback(() => {
+    var _deckRef$current3, _deckRef$current4;
     const {
       latitude,
       longitude,
       zoom
     } = new MapHelper().fitBounds(data.positions, {
-      width: deckRef?.current?.deck?.width,
-      height: deckRef?.current?.deck?.height
+      width: deckRef === null || deckRef === void 0 || (_deckRef$current3 = deckRef.current) === null || _deckRef$current3 === void 0 || (_deckRef$current3 = _deckRef$current3.deck) === null || _deckRef$current3 === void 0 ? void 0 : _deckRef$current3.width,
+      height: deckRef === null || deckRef === void 0 || (_deckRef$current4 = deckRef.current) === null || _deckRef$current4 === void 0 || (_deckRef$current4 = _deckRef$current4.deck) === null || _deckRef$current4 === void 0 ? void 0 : _deckRef$current4.height
     });
     return {
       latitude,
@@ -128,17 +133,15 @@ export function Scatterplot(_ref) {
       if (!xData.isPending && !xData.serverError) {
         // @TODO: add condition to check obs slicing
         setData(d => {
-          return {
-            ...d,
+          return _objectSpread(_objectSpread({}, d), {}, {
             values: xData.data
-          };
+          });
         });
       } else if (!xData.isPending && xData.serverError) {
         setData(d => {
-          return {
-            ...d,
+          return _objectSpread(_objectSpread({}, d), {}, {
             values: []
-          };
+          });
         });
       }
     }
@@ -148,44 +151,41 @@ export function Scatterplot(_ref) {
       setIsRendering(true);
       if (!obsData.isPending && !obsData.serverError) {
         setData(d => {
-          return {
-            ...d,
+          return _objectSpread(_objectSpread({}, d), {}, {
             values: obsData.data
-          };
+          });
         });
       } else if (!obsData.isPending && obsData.serverError) {
         setData(d => {
-          return {
-            ...d,
+          return _objectSpread(_objectSpread({}, d), {}, {
             values: []
-          };
+          });
         });
       }
     } else if (settings.colorEncoding === COLOR_ENCODINGS.VAR && settings.sliceBy.obs) {
       if (!obsData.isPending && !obsData.serverError) {
         setData(d => {
-          return {
-            ...d,
+          return _objectSpread(_objectSpread({}, d), {}, {
             sliceValues: obsData.data
-          };
+          });
         });
       } else if (!obsData.isPending && obsData.serverError) {
         setData(d => {
-          return {
-            ...d,
+          return _objectSpread(_objectSpread({}, d), {}, {
             sliceValues: []
-          };
+          });
         });
       }
     }
   }, [settings.colorEncoding, obsData.data, obsData.isPending, obsData.serverError, settings.sliceBy.obs]);
   const isCategorical = useMemo(() => {
     if (settings.colorEncoding === COLOR_ENCODINGS.OBS) {
-      return settings.selectedObs?.type === OBS_TYPES.CATEGORICAL || settings.selectedObs?.type === OBS_TYPES.BOOLEAN;
+      var _settings$selectedObs, _settings$selectedObs2;
+      return ((_settings$selectedObs = settings.selectedObs) === null || _settings$selectedObs === void 0 ? void 0 : _settings$selectedObs.type) === OBS_TYPES.CATEGORICAL || ((_settings$selectedObs2 = settings.selectedObs) === null || _settings$selectedObs2 === void 0 ? void 0 : _settings$selectedObs2.type) === OBS_TYPES.BOOLEAN;
     } else {
       return false;
     }
-  }, [settings.colorEncoding, settings.selectedObs?.type]);
+  }, [settings.colorEncoding, (_settings$selectedObs3 = settings.selectedObs) === null || _settings$selectedObs3 === void 0 ? void 0 : _settings$selectedObs3.type]);
   useEffect(() => {
     dispatch({
       type: "set.controls.valueRange",
@@ -271,17 +271,18 @@ export function Scatterplot(_ref) {
   const layers = useDeferredValue(mode === ViewMode ? memoizedLayers.reverse() : memoizedLayers); // draw scatterplot on top of polygons when in ViewMode
 
   useEffect(() => {
-    if (!features?.features?.length) {
+    var _features$features;
+    if (!(features !== null && features !== void 0 && (_features$features = features.features) !== null && _features$features !== void 0 && _features$features.length)) {
       dispatch({
         type: "disable.slice.polygons"
       });
     }
-  }, [dispatch, features?.features?.length]);
+  }, [dispatch, features === null || features === void 0 || (_features$features2 = features.features) === null || _features$features2 === void 0 ? void 0 : _features$features2.length]);
   useEffect(() => {
     dispatch({
       type: "set.polygons",
       obsm: settings.selectedObsm,
-      polygons: features?.features || []
+      polygons: (features === null || features === void 0 ? void 0 : features.features) || []
     });
   }, [settings.selectedObsm, dispatch, features.features]);
   function onLayerClick(info) {
@@ -294,9 +295,9 @@ export function Scatterplot(_ref) {
   const getLabel = function (o, v) {
     let isVar = arguments.length > 2 && arguments[2] !== undefined ? arguments[2] : false;
     if (isVar || o.type === OBS_TYPES.CONTINUOUS) {
-      return `${o.name}: ${formatNumerical(parseFloat(v))}`;
+      return "".concat(o.name, ": ").concat(formatNumerical(parseFloat(v)));
     } else {
-      return `${o.name}: ${o.codesMap[v]}`;
+      return "".concat(o.name, ": ").concat(o.codesMap[v]);
     }
   };
   const getTooltip = _ref5 => {
@@ -304,15 +305,17 @@ export function Scatterplot(_ref) {
       object,
       index
     } = _ref5;
-    if (!object || object?.type === "Feature") return;
+    if (!object || (object === null || object === void 0 ? void 0 : object.type) === "Feature") return;
     const text = [];
     if (settings.colorEncoding === COLOR_ENCODINGS.OBS && settings.selectedObs && !_.some(settings.labelObs, {
       name: settings.selectedObs.name
     })) {
-      text.push(getLabel(settings.selectedObs, obsData.data?.[index]));
+      var _obsData$data;
+      text.push(getLabel(settings.selectedObs, (_obsData$data = obsData.data) === null || _obsData$data === void 0 ? void 0 : _obsData$data[index]));
     }
     if (settings.colorEncoding === COLOR_ENCODINGS.VAR && settings.selectedVar) {
-      text.push(getLabel(settings.selectedVar, xData.data?.[index], true));
+      var _xData$data;
+      text.push(getLabel(settings.selectedVar, (_xData$data = xData.data) === null || _xData$data === void 0 ? void 0 : _xData$data[index], true));
     }
     if (settings.labelObs.length) {
       text.push(..._.map(labelObsData.data, (v, k) => {
@@ -326,16 +329,16 @@ export function Scatterplot(_ref) {
       text: text.length ? _.compact(text).join("\n") : null,
       className: grayOut ? "tooltip-grayout" : "deck-tooltip",
       style: !grayOut ? {
-        "border-left": `3px solid ${rgbToHex(getFillColor(null, {
+        "border-left": "3px solid ".concat(rgbToHex(getFillColor(null, {
           index
-        }))}`
+        })))
       } : {
         "border-left": "none"
       }
     };
   };
   const isPending = (isRendering || xData.isPending || obsmData.isPending) && !obsmData.isPending;
-  const error = settings.selectedObsm && obsmData.serverError?.length || settings.colorEncoding === COLOR_ENCODINGS.VAR && xData.serverError?.length || settings.colorEncoding === COLOR_ENCODINGS.OBS && obsData.serverError?.length || settings.labelObs.lengh && labelObsData.serverError?.length;
+  const error = settings.selectedObsm && ((_obsmData$serverError = obsmData.serverError) === null || _obsmData$serverError === void 0 ? void 0 : _obsmData$serverError.length) || settings.colorEncoding === COLOR_ENCODINGS.VAR && ((_xData$serverError = xData.serverError) === null || _xData$serverError === void 0 ? void 0 : _xData$serverError.length) || settings.colorEncoding === COLOR_ENCODINGS.OBS && ((_obsData$serverError = obsData.serverError) === null || _obsData$serverError === void 0 ? void 0 : _obsData$serverError.length) || settings.labelObs.lengh && ((_labelObsData$serverE = labelObsData.serverError) === null || _labelObsData$serverE === void 0 ? void 0 : _labelObsData$serverE.length);
   return /*#__PURE__*/React.createElement("div", {
     className: "cherita-container-scatterplot"
   }, /*#__PURE__*/React.createElement("div", {
@@ -369,12 +372,10 @@ export function Scatterplot(_ref) {
     setFeatures: setFeatures,
     selectedFeatureIndexes: selectedFeatureIndexes,
     resetBounds: () => setViewState(getBounds()),
-    increaseZoom: () => setViewState(v => ({
-      ...v,
+    increaseZoom: () => setViewState(v => _objectSpread(_objectSpread({}, v), {}, {
       zoom: v.zoom + 1
     })),
-    decreaseZoom: () => setViewState(v => ({
-      ...v,
+    decreaseZoom: () => setViewState(v => _objectSpread(_objectSpread({}, v), {}, {
       zoom: v.zoom - 1
     })),
     setShowObs: setShowObs,
@@ -389,8 +390,8 @@ export function Scatterplot(_ref) {
   }, /*#__PURE__*/React.createElement(FontAwesomeIcon, {
     icon: faTriangleExclamation
   }), "\xA0Error loading data"), /*#__PURE__*/React.createElement(Toolbox, {
-    mode: settings.colorEncoding === COLOR_ENCODINGS.VAR ? settings.selectedVar?.name : settings.colorEncoding === COLOR_ENCODINGS.OBS ? settings.selectedObs?.name : null,
-    obsLength: parseInt(obsmData.data?.length),
+    mode: settings.colorEncoding === COLOR_ENCODINGS.VAR ? (_settings$selectedVar = settings.selectedVar) === null || _settings$selectedVar === void 0 ? void 0 : _settings$selectedVar.name : settings.colorEncoding === COLOR_ENCODINGS.OBS ? (_settings$selectedObs4 = settings.selectedObs) === null || _settings$selectedObs4 === void 0 ? void 0 : _settings$selectedObs4.name : null,
+    obsLength: parseInt((_obsmData$data = obsmData.data) === null || _obsmData$data === void 0 ? void 0 : _obsmData$data.length),
     slicedLength: parseInt(slicedLength)
   })), /*#__PURE__*/React.createElement(Legend, {
     isCategorical: isCategorical,

package/dist/esm/components/scatterplot/ScatterplotControls.js

@@ -6,10 +6,11 @@ import { COLORSCALES } from "../../constants/colorscales";
 import { COLOR_ENCODINGS, OBS_TYPES } from "../../constants/constants";
 import { useSettings, useSettingsDispatch } from "../../context/SettingsContext";
 export const ScatterplotControls = () => {
+  var _settings$selectedObs;
   const settings = useSettings();
   const dispatch = useSettingsDispatch();
   const [sliderValue, setSliderValue] = React.useState(settings.controls.range || [0, 1]);
-  const isCategorical = settings.colorEncoding === COLOR_ENCODINGS.OBS ? settings.selectedObs?.type === OBS_TYPES.CATEGORICAL : false;
+  const isCategorical = settings.colorEncoding === COLOR_ENCODINGS.OBS ? ((_settings$selectedObs = settings.selectedObs) === null || _settings$selectedObs === void 0 ? void 0 : _settings$selectedObs.type) === OBS_TYPES.CATEGORICAL : false;
   const colormapList = _.keys(COLORSCALES).map(key => /*#__PURE__*/React.createElement(Dropdown.Item, {
     key: key,
     active: settings.controls.colorScale === key,

package/dist/esm/components/scatterplot/SpatialControls.js

@@ -13,6 +13,7 @@ import { OffcanvasControls } from "../offcanvas";
 import { ScatterplotControls } from "./ScatterplotControls";
 import { useSettings, useSettingsDispatch } from "../../context/SettingsContext";
 export function SpatialControls(_ref) {
+  var _features$features;
   let {
     mode,
     setMode,
@@ -140,7 +141,7 @@ export function SpatialControls(_ref) {
     onSelect: onSelect
   }, /*#__PURE__*/React.createElement(Dropdown.Toggle, {
     id: "dropdown-autoclose-outside",
-    className: `caret-off ${mode === DrawPolygonByDraggingMode || mode === ModifyMode ? "active" : ""}`
+    className: "caret-off ".concat(mode === DrawPolygonByDraggingMode || mode === ModifyMode ? "active" : "")
   }, /*#__PURE__*/React.createElement(FontAwesomeIcon, {
     icon: faDrawPolygon
   })), /*#__PURE__*/React.createElement(Dropdown.Menu, null, /*#__PURE__*/React.createElement(Dropdown.Header, null, "Polygon tools"), /*#__PURE__*/React.createElement(Dropdown.Item, {
@@ -158,7 +159,7 @@ export function SpatialControls(_ref) {
   }, /*#__PURE__*/React.createElement(FontAwesomeIcon, {
     icon: faTrash,
     className: "nav-icon"
-  }), "Delete polygons"))), !!features?.features?.length && polygonControls, /*#__PURE__*/React.createElement(Button, {
+  }), "Delete polygons"))), !!(features !== null && features !== void 0 && (_features$features = features.features) !== null && _features$features !== void 0 && _features$features.length) && polygonControls, /*#__PURE__*/React.createElement(Button, {
     onClick: handleShowControls
   }, /*#__PURE__*/React.createElement(FontAwesomeIcon, {
     icon: faSliders

package/dist/esm/components/search-bar/SearchBar.js

@@ -1,3 +1,8 @@
+function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
+function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
+function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
+function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
+function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
 import React, { useState } from "react";
 import CloseIcon from "@mui/icons-material/Close";
 import SearchIcon from "@mui/icons-material/Search";
@@ -111,9 +116,9 @@ export function SearchModal(_ref2) {
     className: "flex-column"
   }, searchVar && /*#__PURE__*/React.createElement(Nav.Item, null, /*#__PURE__*/React.createElement(Nav.Link, {
     eventKey: FEATURE_TYPE.VAR
-  }, "Genes", " ", !!varResultsLength && `(${varResultsLength})`)), searchDiseases && /*#__PURE__*/React.createElement(Nav.Item, null, /*#__PURE__*/React.createElement(Nav.Link, {
+  }, "Genes", " ", !!varResultsLength && "(".concat(varResultsLength, ")"))), searchDiseases && /*#__PURE__*/React.createElement(Nav.Item, null, /*#__PURE__*/React.createElement(Nav.Link, {
     eventKey: FEATURE_TYPE.DISEASE
-  }, "Diseases", " ", !!diseaseResultsLength && `(${diseaseResultsLength})`)))), /*#__PURE__*/React.createElement(Col, {
+  }, "Diseases", " ", !!diseaseResultsLength && "(".concat(diseaseResultsLength, ")"))))), /*#__PURE__*/React.createElement(Col, {
     sm: 9,
     className: "py-3"
   }, /*#__PURE__*/React.createElement(Tab.Content, null, searchVar && /*#__PURE__*/React.createElement(Tab.Pane, {
@@ -123,10 +128,9 @@ export function SearchModal(_ref2) {
     handleSelect: handleSelect,
     selectedResult: selectedResult.var,
     setSelectedResult: item => setSelectedResult(prev => {
-      return {
-        ...prev,
+      return _objectSpread(_objectSpread({}, prev), {}, {
         var: item
-      };
+      });
     }),
     setResultsLength: setVarResultsLength
   })), searchDiseases && /*#__PURE__*/React.createElement(Tab.Pane, {
@@ -135,10 +139,9 @@ export function SearchModal(_ref2) {
     text: text,
     selectedResult: selectedResult.disease,
     setSelectedResult: item => setSelectedResult(prev => {
-      return {
-        ...prev,
+      return _objectSpread(_objectSpread({}, prev), {}, {
         disease: item
-      };
+      });
     }),
     setResultsLength: setDiseaseResultsLength
   }))))))), /*#__PURE__*/React.createElement(Col, {