@haniffalab/cherita-react 1.2.0-dev.2025-05-21.e8f5ce54 → 1.2.0-dev.2025-05-21.e57ef5f2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (75) hide show
  1. package/dist/cjs/components/dotplot/Dotplot.js +26 -19
  2. package/dist/cjs/components/dotplot/DotplotControls.js +17 -19
  3. package/dist/cjs/components/full-page/FullPage.js +9 -7
  4. package/dist/cjs/components/full-page/FullPagePseudospatial.js +9 -7
  5. package/dist/cjs/components/heatmap/Heatmap.js +22 -13
  6. package/dist/cjs/components/matrixplot/Matrixplot.js +22 -13
  7. package/dist/cjs/components/obs-list/ObsItem.js +37 -29
  8. package/dist/cjs/components/obs-list/ObsList.js +47 -44
  9. package/dist/cjs/components/obsm-list/ObsmList.js +9 -6
  10. package/dist/cjs/components/offcanvas/index.js +13 -9
  11. package/dist/cjs/components/pseudospatial/Pseudospatial.js +61 -53
  12. package/dist/cjs/components/pseudospatial/PseudospatialToolbar.js +17 -11
  13. package/dist/cjs/components/scatterplot/Scatterplot.js +52 -52
  14. package/dist/cjs/components/scatterplot/ScatterplotControls.js +3 -3
  15. package/dist/cjs/components/scatterplot/SpatialControls.js +4 -4
  16. package/dist/cjs/components/search-bar/SearchBar.js +12 -10
  17. package/dist/cjs/components/search-bar/SearchInfo.js +14 -13
  18. package/dist/cjs/components/search-bar/SearchResults.js +16 -14
  19. package/dist/cjs/components/var-list/VarItem.js +10 -7
  20. package/dist/cjs/components/var-list/VarList.js +14 -9
  21. package/dist/cjs/components/var-list/VarListToolbar.js +1 -2
  22. package/dist/cjs/components/var-list/VarSet.js +1 -2
  23. package/dist/cjs/components/violin/Violin.js +44 -35
  24. package/dist/cjs/context/DatasetContext.js +17 -11
  25. package/dist/cjs/context/FilterContext.js +9 -8
  26. package/dist/cjs/context/SettingsContext.js +169 -237
  27. package/dist/cjs/context/ZarrDataContext.js +1 -2
  28. package/dist/cjs/helpers/color-helper.js +3 -3
  29. package/dist/cjs/helpers/zarr-helper.js +15 -12
  30. package/dist/cjs/utils/Filter.js +13 -9
  31. package/dist/cjs/utils/Histogram.js +4 -3
  32. package/dist/cjs/utils/ImageViewer.js +1 -2
  33. package/dist/cjs/utils/Legend.js +3 -3
  34. package/dist/cjs/utils/LoadingIndicators.js +1 -1
  35. package/dist/cjs/utils/VirtualizedList.js +16 -13
  36. package/dist/cjs/utils/errors.js +20 -22
  37. package/dist/cjs/utils/requests.js +13 -10
  38. package/dist/cjs/utils/zarrData.js +12 -8
  39. package/dist/css/cherita.css +13 -9
  40. package/dist/css/cherita.css.map +1 -1
  41. package/dist/esm/components/dotplot/Dotplot.js +25 -17
  42. package/dist/esm/components/dotplot/DotplotControls.js +16 -17
  43. package/dist/esm/components/full-page/FullPage.js +8 -5
  44. package/dist/esm/components/full-page/FullPagePseudospatial.js +8 -5
  45. package/dist/esm/components/heatmap/Heatmap.js +21 -11
  46. package/dist/esm/components/matrixplot/Matrixplot.js +21 -11
  47. package/dist/esm/components/obs-list/ObsItem.js +36 -27
  48. package/dist/esm/components/obs-list/ObsList.js +46 -42
  49. package/dist/esm/components/obsm-list/ObsmList.js +8 -4
  50. package/dist/esm/components/offcanvas/index.js +13 -9
  51. package/dist/esm/components/pseudospatial/Pseudospatial.js +60 -51
  52. package/dist/esm/components/pseudospatial/PseudospatialToolbar.js +16 -9
  53. package/dist/esm/components/scatterplot/Scatterplot.js +51 -50
  54. package/dist/esm/components/scatterplot/ScatterplotControls.js +2 -1
  55. package/dist/esm/components/scatterplot/SpatialControls.js +3 -2
  56. package/dist/esm/components/search-bar/SearchBar.js +11 -8
  57. package/dist/esm/components/search-bar/SearchInfo.js +13 -11
  58. package/dist/esm/components/search-bar/SearchResults.js +15 -12
  59. package/dist/esm/components/var-list/VarItem.js +9 -5
  60. package/dist/esm/components/var-list/VarList.js +13 -7
  61. package/dist/esm/components/violin/Violin.js +43 -33
  62. package/dist/esm/context/DatasetContext.js +16 -9
  63. package/dist/esm/context/FilterContext.js +8 -6
  64. package/dist/esm/context/SettingsContext.js +168 -235
  65. package/dist/esm/helpers/color-helper.js +3 -3
  66. package/dist/esm/helpers/zarr-helper.js +15 -12
  67. package/dist/esm/utils/Filter.js +13 -9
  68. package/dist/esm/utils/Histogram.js +4 -3
  69. package/dist/esm/utils/Legend.js +2 -1
  70. package/dist/esm/utils/LoadingIndicators.js +1 -1
  71. package/dist/esm/utils/VirtualizedList.js +15 -11
  72. package/dist/esm/utils/errors.js +20 -22
  73. package/dist/esm/utils/requests.js +13 -10
  74. package/dist/esm/utils/zarrData.js +12 -8
  75. package/package.json +4 -2
@@ -19,8 +19,12 @@ var _SettingsContext = require("../../context/SettingsContext");
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  var _LoadingIndicators = require("../../utils/LoadingIndicators");
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  var _requests = require("../../utils/requests");
21
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  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
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- function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
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- function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
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+ function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
23
+ function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
24
+ function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
25
+ function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
26
+ function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
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+ function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
24
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  const useVarMean = function (varKeys) {
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  let enabled = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : false;
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  const ENDPOINT = "matrix/mean";
@@ -36,13 +40,12 @@ const useVarMean = function (varKeys) {
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  });
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  (0, _react.useEffect)(() => {
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  setParams(p => {
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- return {
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- ...p,
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+ return _objectSpread(_objectSpread({}, p), {}, {
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  varKeys: _lodash.default.map(varKeys, v => v.isSet ? {
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  name: v.name,
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  indices: v.vars.map(v => v.index)
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  } : v.index)
45
- };
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+ });
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  });
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  }, [varKeys]);
48
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  return (0, _requests.useFetch)(ENDPOINT, params, {
@@ -56,17 +59,19 @@ const sortMeans = (i, means) => {
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  return means[i.name] || _lodash.default.min(_lodash.default.values(means)) - 1;
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  };
58
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  function VarNamesList(_ref) {
62
+ var _settings$selectedVar, _settings$selectedVar2;
59
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  let {
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  mode = _constants.SELECTION_MODES.SINGLE,
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  displayName = "genes"
62
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  } = _ref;
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  const settings = (0, _SettingsContext.useSettings)();
64
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  const dispatch = (0, _SettingsContext.useSettingsDispatch)();
65
- const [active, setActive] = (0, _react.useState)(mode === _constants.SELECTION_MODES.SINGLE ? settings.selectedVar?.matrix_index || settings.selectedVar?.name : settings.selectedMultiVar.map(i => i.matrix_index || i.name));
69
+ const [active, setActive] = (0, _react.useState)(mode === _constants.SELECTION_MODES.SINGLE ? ((_settings$selectedVar = settings.selectedVar) === null || _settings$selectedVar === void 0 ? void 0 : _settings$selectedVar.matrix_index) || ((_settings$selectedVar2 = settings.selectedVar) === null || _settings$selectedVar2 === void 0 ? void 0 : _settings$selectedVar2.name) : settings.selectedMultiVar.map(i => i.matrix_index || i.name));
66
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  const [sortedVars, setSortedVars] = (0, _react.useState)([]);
67
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  (0, _react.useEffect)(() => {
68
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  if (mode === _constants.SELECTION_MODES.SINGLE) {
69
- setActive(settings.selectedVar?.matrix_index || settings.selectedVar?.name);
73
+ var _settings$selectedVar3, _settings$selectedVar4;
74
+ setActive(((_settings$selectedVar3 = settings.selectedVar) === null || _settings$selectedVar3 === void 0 ? void 0 : _settings$selectedVar3.matrix_index) || ((_settings$selectedVar4 = settings.selectedVar) === null || _settings$selectedVar4 === void 0 ? void 0 : _settings$selectedVar4.name));
70
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  }
71
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  }, [mode, settings.selectedVar]);
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  (0, _react.useEffect)(() => {
@@ -117,13 +122,13 @@ function VarNamesList(_ref) {
117
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  });
118
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  const newSetName = () => {
119
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  let n = 1;
120
- let setName = `Set ${n}`;
125
+ let setName = "Set ".concat(n);
121
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  const nameExists = name => {
122
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  return settings.vars.some(v => v.name === name);
123
128
  };
124
129
  while (nameExists(setName)) {
125
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  n++;
126
- setName = `Set ${n}`;
131
+ setName = "Set ".concat(n);
127
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  }
128
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  return setName;
129
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  };
@@ -10,8 +10,7 @@ var _reactFontawesome = require("@fortawesome/react-fontawesome");
10
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  var _reactBootstrap = require("react-bootstrap");
11
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  var _constants = require("../../constants/constants");
12
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  var _SettingsContext = require("../../context/SettingsContext");
13
- function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
14
- function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
13
+ function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
15
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  // @TODO: set option for "var" and "disease"
16
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  function VarListToolbar(_ref) {
17
16
  let {
@@ -14,8 +14,7 @@ var _constants = require("../../constants/constants");
14
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  var _SettingsContext = require("../../context/SettingsContext");
15
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  var _SearchBar = require("../search-bar/SearchBar");
16
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  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
17
- function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
18
- function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
17
+ function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
19
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  // @TODO: add button to score genes and plot
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21
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  const addVarToSet = (dispatch, set, v) => {
@@ -17,9 +17,14 @@ var _SettingsContext = require("../../context/SettingsContext");
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  var _LoadingIndicators = require("../../utils/LoadingIndicators");
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  var _requests = require("../../utils/requests");
19
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  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
20
- function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
21
- function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
20
+ function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
21
+ function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
22
+ function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
23
+ function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
24
+ function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
25
+ function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
22
26
  function Violin(_ref) {
27
+ var _settings$selectedVar, _settings$selectedVar2, _settings$selectedVar3, _settings$selectedVar4, _settings$selectedObs, _settings$selectedObs2, _settings$selectedObs3;
23
28
  let {
24
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  mode = _constants.VIOLIN_MODES.MULTIKEY
25
30
  } = _ref;
@@ -33,30 +38,32 @@ function Violin(_ref) {
33
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  const [data, setData] = (0, _react.useState)([]);
34
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  const [layout, setLayout] = (0, _react.useState)({});
35
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  const [hasSelections, setHasSelections] = (0, _react.useState)(false);
36
- const [params, setParams] = (0, _react.useState)({
41
+ const [params, setParams] = (0, _react.useState)(_objectSpread({
37
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  url: dataset.url,
38
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  mode: mode,
39
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  scale: settings.controls.scale.violinplot.value,
40
- varNamesCol: dataset.varNamesCol,
41
- ...{
42
- [_constants.VIOLIN_MODES.MULTIKEY]: {
43
- varKeys: settings.selectedMultiVar.map(i => i.isSet ? {
44
- name: i.name,
45
- indices: i.vars.map(v => v.index)
46
- } : i.index),
47
- obsKeys: [] // @TODO: implement
48
- },
49
- [_constants.VIOLIN_MODES.GROUPBY]: {
50
- varKey: settings.selectedVar?.isSet ? {
51
- name: settings.selectedVar?.name,
52
- indices: settings.selectedVar?.vars.map(v => v.index)
53
- } : settings.selectedVar?.index,
54
- obsCol: settings.selectedObs,
55
- obsValues: !settings.selectedObs?.omit.length ? null : _lodash.default.difference(_lodash.default.values(settings.selectedObs?.codes), settings.selectedObs?.omit).map(c => settings.selectedObs?.codesMap[c]),
56
- obsIndices: isSliced ? [...(obsIndices || [])] : null
57
- }
58
- }[mode]
59
- });
45
+ varNamesCol: dataset.varNamesCol
46
+ }, {
47
+ [_constants.VIOLIN_MODES.MULTIKEY]: {
48
+ varKeys: settings.selectedMultiVar.map(i => i.isSet ? {
49
+ name: i.name,
50
+ indices: i.vars.map(v => v.index)
51
+ } : i.index),
52
+ obsKeys: [] // @TODO: implement
53
+ },
54
+ [_constants.VIOLIN_MODES.GROUPBY]: {
55
+ varKey: (_settings$selectedVar = settings.selectedVar) !== null && _settings$selectedVar !== void 0 && _settings$selectedVar.isSet ? {
56
+ name: (_settings$selectedVar2 = settings.selectedVar) === null || _settings$selectedVar2 === void 0 ? void 0 : _settings$selectedVar2.name,
57
+ indices: (_settings$selectedVar3 = settings.selectedVar) === null || _settings$selectedVar3 === void 0 ? void 0 : _settings$selectedVar3.vars.map(v => v.index)
58
+ } : (_settings$selectedVar4 = settings.selectedVar) === null || _settings$selectedVar4 === void 0 ? void 0 : _settings$selectedVar4.index,
59
+ obsCol: settings.selectedObs,
60
+ obsValues: !((_settings$selectedObs = settings.selectedObs) !== null && _settings$selectedObs !== void 0 && _settings$selectedObs.omit.length) ? null : _lodash.default.difference(_lodash.default.values((_settings$selectedObs2 = settings.selectedObs) === null || _settings$selectedObs2 === void 0 ? void 0 : _settings$selectedObs2.codes), (_settings$selectedObs3 = settings.selectedObs) === null || _settings$selectedObs3 === void 0 ? void 0 : _settings$selectedObs3.omit).map(c => {
61
+ var _settings$selectedObs4;
62
+ return (_settings$selectedObs4 = settings.selectedObs) === null || _settings$selectedObs4 === void 0 ? void 0 : _settings$selectedObs4.codesMap[c];
63
+ }),
64
+ obsIndices: isSliced ? [...(obsIndices || [])] : null
65
+ }
66
+ }[mode]));
60
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  // @TODO: set default scale
61
68
 
62
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  (0, _react.useEffect)(() => {
@@ -67,8 +74,7 @@ function Violin(_ref) {
67
74
  setHasSelections(false);
68
75
  }
69
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  setParams(p => {
70
- return {
71
- ...p,
77
+ return _objectSpread(_objectSpread({}, p), {}, {
72
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  url: dataset.url,
73
79
  mode: mode,
74
80
  varKeys: settings.selectedMultiVar.map(i => i.isSet ? {
@@ -77,7 +83,7 @@ function Violin(_ref) {
77
83
  } : i.index),
78
84
  scale: settings.controls.scale.violinplot.value,
79
85
  varNamesCol: dataset.varNamesCol
80
- };
86
+ });
81
87
  });
82
88
  } else if (mode === _constants.VIOLIN_MODES.GROUPBY) {
83
89
  if (settings.selectedObs && settings.selectedVar) {
@@ -86,20 +92,23 @@ function Violin(_ref) {
86
92
  setHasSelections(false);
87
93
  }
88
94
  setParams(p => {
89
- return {
90
- ...p,
95
+ var _settings$selectedVar5, _settings$selectedVar6, _settings$selectedVar7, _settings$selectedVar8, _settings$selectedObs5, _settings$selectedObs6, _settings$selectedObs7;
96
+ return _objectSpread(_objectSpread({}, p), {}, {
91
97
  url: dataset.url,
92
98
  mode: mode,
93
- varKey: settings.selectedVar?.isSet ? {
94
- name: settings.selectedVar?.name,
95
- indices: settings.selectedVar?.vars.map(v => v.index)
96
- } : settings.selectedVar?.index,
99
+ varKey: (_settings$selectedVar5 = settings.selectedVar) !== null && _settings$selectedVar5 !== void 0 && _settings$selectedVar5.isSet ? {
100
+ name: (_settings$selectedVar6 = settings.selectedVar) === null || _settings$selectedVar6 === void 0 ? void 0 : _settings$selectedVar6.name,
101
+ indices: (_settings$selectedVar7 = settings.selectedVar) === null || _settings$selectedVar7 === void 0 ? void 0 : _settings$selectedVar7.vars.map(v => v.index)
102
+ } : (_settings$selectedVar8 = settings.selectedVar) === null || _settings$selectedVar8 === void 0 ? void 0 : _settings$selectedVar8.index,
97
103
  obsCol: settings.selectedObs,
98
- obsValues: !settings.selectedObs?.omit.length ? null : _lodash.default.difference(_lodash.default.values(settings.selectedObs?.codes), settings.selectedObs?.omit).map(c => settings.selectedObs?.codesMap[c]),
104
+ obsValues: !((_settings$selectedObs5 = settings.selectedObs) !== null && _settings$selectedObs5 !== void 0 && _settings$selectedObs5.omit.length) ? null : _lodash.default.difference(_lodash.default.values((_settings$selectedObs6 = settings.selectedObs) === null || _settings$selectedObs6 === void 0 ? void 0 : _settings$selectedObs6.codes), (_settings$selectedObs7 = settings.selectedObs) === null || _settings$selectedObs7 === void 0 ? void 0 : _settings$selectedObs7.omit).map(c => {
105
+ var _settings$selectedObs8;
106
+ return (_settings$selectedObs8 = settings.selectedObs) === null || _settings$selectedObs8 === void 0 ? void 0 : _settings$selectedObs8.codesMap[c];
107
+ }),
99
108
  obsIndices: isSliced ? [...(obsIndices || [])] : null,
100
109
  scale: settings.controls.scale.violinplot.value,
101
110
  varNamesCol: dataset.varNamesCol
102
- };
111
+ });
103
112
  });
104
113
  }
105
114
  }, [settings.controls.scale.violinplot.value, settings.selectedMultiVar, settings.selectedObs, settings.selectedVar, dataset.url, dataset.varNamesCol, obsIndices, isSliced, mode]);
@@ -128,7 +137,7 @@ function Violin(_ref) {
128
137
  maxWidth: "100%",
129
138
  maxHeight: "100%"
130
139
  }
131
- }), fetchedData?.resampled && /*#__PURE__*/_react.default.createElement(_reactBootstrap.Alert, {
140
+ }), (fetchedData === null || fetchedData === void 0 ? void 0 : fetchedData.resampled) && /*#__PURE__*/_react.default.createElement(_reactBootstrap.Alert, {
132
141
  variant: "warning"
133
142
  }, /*#__PURE__*/_react.default.createElement("b", null, "Warning:"), " For performance reasons this plot was generated with resampled data. It will not be exactly the same as one produced with the entire dataset. \xA0", /*#__PURE__*/_react.default.createElement(_reactBootstrap.OverlayTrigger, {
134
143
  placement: "top",
@@ -14,9 +14,16 @@ var _lodash = _interopRequireDefault(require("lodash"));
14
14
  var _FilterContext = require("./FilterContext");
15
15
  var _SettingsContext = require("./SettingsContext");
16
16
  var _ZarrDataContext = require("./ZarrDataContext");
17
+ const _excluded = ["dataset_url", "children"];
17
18
  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
18
- function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
19
- function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
19
+ function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
20
+ function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
21
+ function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
22
+ function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
23
+ function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
24
+ function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
25
+ function _objectWithoutProperties(e, t) { if (null == e) return {}; var o, r, i = _objectWithoutPropertiesLoose(e, t); if (Object.getOwnPropertySymbols) { var n = Object.getOwnPropertySymbols(e); for (r = 0; r < n.length; r++) o = n[r], -1 === t.indexOf(o) && {}.propertyIsEnumerable.call(e, o) && (i[o] = e[o]); } return i; }
26
+ function _objectWithoutPropertiesLoose(r, e) { if (null == r) return {}; var t = {}; for (var n in r) if ({}.hasOwnProperty.call(r, n)) { if (-1 !== e.indexOf(n)) continue; t[n] = r[n]; } return t; }
20
27
  const DatasetContext = exports.DatasetContext = /*#__PURE__*/(0, _react.createContext)(null);
21
28
  const queryClient = new _reactQuery.QueryClient({
22
29
  defaultOptions: {
@@ -48,7 +55,7 @@ const persistOptions = {
48
55
  state
49
56
  } = _ref;
50
57
  if (state.status === "success") {
51
- return persistKeys.includes(queryKey?.[0]);
58
+ return persistKeys.includes(queryKey === null || queryKey === void 0 ? void 0 : queryKey[0]);
52
59
  }
53
60
  return false;
54
61
  }
@@ -66,14 +73,13 @@ const initialDataset = {
66
73
  };
67
74
  function DatasetProvider(_ref2) {
68
75
  let {
69
- dataset_url,
70
- children,
71
- ...dataset_params
72
- } = _ref2;
73
- const dataset = _lodash.default.assign(initialDataset, {
74
- url: dataset_url,
75
- ...dataset_params
76
- });
76
+ dataset_url,
77
+ children
78
+ } = _ref2,
79
+ dataset_params = _objectWithoutProperties(_ref2, _excluded);
80
+ const dataset = _lodash.default.assign(initialDataset, _objectSpread({
81
+ url: dataset_url
82
+ }, dataset_params));
77
83
  return /*#__PURE__*/_react.default.createElement(DatasetContext.Provider, {
78
84
  value: dataset
79
85
  }, /*#__PURE__*/_react.default.createElement(_SettingsContext.SettingsProvider, {
@@ -8,8 +8,12 @@ exports.FilteredDataDispatchContext = exports.FilteredDataContext = void 0;
8
8
  exports.useFilteredData = useFilteredData;
9
9
  exports.useFilteredDataDispatch = useFilteredDataDispatch;
10
10
  var _react = _interopRequireWildcard(require("react"));
11
- function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
12
- function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
11
+ function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
12
+ function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
13
+ function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
14
+ function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
15
+ function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
16
+ function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
13
17
  const FilteredDataContext = exports.FilteredDataContext = /*#__PURE__*/(0, _react.createContext)(null);
14
18
  const FilteredDataDispatchContext = exports.FilteredDataDispatchContext = /*#__PURE__*/(0, _react.createContext)(null);
15
19
  const initialFilterData = {
@@ -23,9 +27,7 @@ function FilterProvider(_ref) {
23
27
  let {
24
28
  children
25
29
  } = _ref;
26
- const [filteredData, dispatch] = (0, _react.useReducer)(filterReducer, {
27
- ...initialFilterData
28
- });
30
+ const [filteredData, dispatch] = (0, _react.useReducer)(filterReducer, _objectSpread({}, initialFilterData));
29
31
  return /*#__PURE__*/_react.default.createElement(FilteredDataContext.Provider, {
30
32
  value: filteredData
31
33
  }, /*#__PURE__*/_react.default.createElement(FilteredDataDispatchContext.Provider, {
@@ -42,14 +44,13 @@ function filterReducer(filteredData, action) {
42
44
  switch (action.type) {
43
45
  case "set.obs.indices":
44
46
  {
45
- return {
46
- ...filteredData,
47
+ return _objectSpread(_objectSpread({}, filteredData), {}, {
47
48
  obsIndices: action.indices,
48
49
  valueMin: action.valueMin,
49
50
  valueMax: action.valueMax,
50
51
  slicedLength: action.slicedLength,
51
52
  isSliced: action.isSliced
52
- };
53
+ });
53
54
  }
54
55
  default:
55
56
  {