@haniffalab/cherita-react 1.0.0-dev.2025-03-13.73606a74 → 1.0.0-dev.2025-03-13.274a553c

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (99) hide show
  1. package/dist/{components → cjs/components}/full-page/FullPage.js +6 -5
  2. package/dist/{components → cjs/components}/full-page/FullPagePseudospatial.js +6 -5
  3. package/dist/{components → cjs/components}/obs-list/ObsItem.js +50 -46
  4. package/dist/{components → cjs/components}/obs-list/ObsList.js +9 -7
  5. package/dist/{components → cjs/components}/obs-list/ObsToolbar.js +12 -11
  6. package/dist/{components → cjs/components}/offcanvas/index.js +24 -20
  7. package/dist/{components → cjs/components}/pseudospatial/Pseudospatial.js +9 -8
  8. package/dist/{components → cjs/components}/pseudospatial/PseudospatialToolbar.js +4 -3
  9. package/dist/{components → cjs/components}/scatterplot/Scatterplot.js +31 -22
  10. package/dist/{components → cjs/components}/scatterplot/SpatialControls.js +11 -10
  11. package/dist/{components → cjs/components}/scatterplot/Toolbox.js +6 -5
  12. package/dist/{components → cjs/components}/search-bar/SearchBar.js +6 -5
  13. package/dist/{components → cjs/components}/search-bar/SearchResults.js +13 -17
  14. package/dist/{components → cjs/components}/var-list/VarItem.js +32 -27
  15. package/dist/{components → cjs/components}/var-list/VarList.js +14 -10
  16. package/dist/{components → cjs/components}/var-list/VarListToolbar.js +4 -3
  17. package/dist/{components → cjs/components}/var-list/VarSet.js +21 -18
  18. package/dist/{components → cjs/components}/violin/Violin.js +4 -3
  19. package/dist/{context → cjs/context}/DatasetContext.js +11 -9
  20. package/dist/{context → cjs/context}/FilterContext.js +4 -3
  21. package/dist/{context → cjs/context}/ZarrDataContext.js +4 -3
  22. package/dist/{helpers → cjs/helpers}/color-helper.js +12 -11
  23. package/dist/{helpers → cjs/helpers}/map-helper.js +8 -7
  24. package/dist/{helpers → cjs/helpers}/zarr-helper.js +25 -15
  25. package/dist/{utils → cjs/utils}/Histogram.js +12 -8
  26. package/dist/{utils → cjs/utils}/ImageViewer.js +6 -5
  27. package/dist/{utils → cjs/utils}/Legend.js +8 -7
  28. package/dist/{utils → cjs/utils}/LoadingIndicators.js +5 -4
  29. package/dist/{utils → cjs/utils}/VirtualizedList.js +10 -9
  30. package/dist/{utils → cjs/utils}/requests.js +33 -21
  31. package/dist/{utils → cjs/utils}/string.js +9 -4
  32. package/dist/{utils → cjs/utils}/zarrData.js +12 -4
  33. package/dist/css/cherita.css +10 -0
  34. package/dist/css/cherita.css.map +1 -1
  35. package/dist/esm/components/dotplot/Dotplot.js +135 -0
  36. package/dist/esm/components/dotplot/DotplotControls.js +148 -0
  37. package/dist/esm/components/full-page/FullPage.js +134 -0
  38. package/dist/esm/components/full-page/FullPagePseudospatial.js +151 -0
  39. package/dist/esm/components/heatmap/Heatmap.js +105 -0
  40. package/dist/esm/components/heatmap/HeatmapControls.js +23 -0
  41. package/dist/esm/components/matrixplot/Matrixplot.js +107 -0
  42. package/dist/esm/components/matrixplot/MatrixplotControls.js +38 -0
  43. package/dist/esm/components/obs-list/ObsItem.js +477 -0
  44. package/dist/esm/components/obs-list/ObsList.js +256 -0
  45. package/dist/esm/components/obs-list/ObsToolbar.js +58 -0
  46. package/dist/esm/components/obsm-list/ObsmList.js +72 -0
  47. package/dist/esm/components/offcanvas/index.js +67 -0
  48. package/dist/esm/components/pseudospatial/Pseudospatial.js +228 -0
  49. package/dist/esm/components/pseudospatial/PseudospatialToolbar.js +123 -0
  50. package/dist/esm/components/scatterplot/Scatterplot.js +394 -0
  51. package/dist/esm/components/scatterplot/ScatterplotControls.js +71 -0
  52. package/dist/esm/components/scatterplot/SpatialControls.js +140 -0
  53. package/dist/esm/components/scatterplot/Toolbox.js +25 -0
  54. package/dist/esm/components/search-bar/SearchBar.js +74 -0
  55. package/dist/esm/components/search-bar/SearchResults.js +139 -0
  56. package/dist/esm/components/var-list/VarItem.js +250 -0
  57. package/dist/esm/components/var-list/VarList.js +267 -0
  58. package/dist/esm/components/var-list/VarListToolbar.js +84 -0
  59. package/dist/esm/components/var-list/VarSet.js +193 -0
  60. package/dist/esm/components/violin/Violin.js +141 -0
  61. package/dist/esm/components/violin/ViolinControls.js +24 -0
  62. package/dist/esm/constants/colorscales.js +22 -0
  63. package/dist/esm/constants/constants.js +84 -0
  64. package/dist/esm/context/DatasetContext.js +572 -0
  65. package/dist/esm/context/FilterContext.js +48 -0
  66. package/dist/esm/context/ZarrDataContext.js +26 -0
  67. package/dist/esm/helpers/color-helper.js +66 -0
  68. package/dist/esm/helpers/map-helper.js +53 -0
  69. package/dist/esm/helpers/zarr-helper.js +129 -0
  70. package/dist/esm/index.js +22 -0
  71. package/dist/esm/utils/Filter.js +147 -0
  72. package/dist/esm/utils/Histogram.js +44 -0
  73. package/dist/esm/utils/ImageViewer.js +27 -0
  74. package/dist/esm/utils/Legend.js +58 -0
  75. package/dist/esm/utils/LoadingIndicators.js +22 -0
  76. package/dist/esm/utils/VirtualizedList.js +55 -0
  77. package/dist/esm/utils/errors.js +47 -0
  78. package/dist/esm/utils/requests.js +116 -0
  79. package/dist/esm/utils/search.js +39 -0
  80. package/dist/esm/utils/string.js +59 -0
  81. package/dist/esm/utils/zarrData.js +102 -0
  82. package/package.json +16 -5
  83. package/scss/cherita.scss +10 -0
  84. package/scss/components/layouts.scss +1 -0
  85. /package/dist/{components → cjs/components}/dotplot/Dotplot.js +0 -0
  86. /package/dist/{components → cjs/components}/dotplot/DotplotControls.js +0 -0
  87. /package/dist/{components → cjs/components}/heatmap/Heatmap.js +0 -0
  88. /package/dist/{components → cjs/components}/heatmap/HeatmapControls.js +0 -0
  89. /package/dist/{components → cjs/components}/matrixplot/Matrixplot.js +0 -0
  90. /package/dist/{components → cjs/components}/matrixplot/MatrixplotControls.js +0 -0
  91. /package/dist/{components → cjs/components}/obsm-list/ObsmList.js +0 -0
  92. /package/dist/{components → cjs/components}/scatterplot/ScatterplotControls.js +0 -0
  93. /package/dist/{components → cjs/components}/violin/ViolinControls.js +0 -0
  94. /package/dist/{constants → cjs/constants}/colorscales.js +0 -0
  95. /package/dist/{constants → cjs/constants}/constants.js +0 -0
  96. /package/dist/{index.js → cjs/index.js} +0 -0
  97. /package/dist/{utils → cjs/utils}/Filter.js +0 -0
  98. /package/dist/{utils → cjs/utils}/errors.js +0 -0
  99. /package/dist/{utils → cjs/utils}/search.js +0 -0
@@ -18,7 +18,8 @@ var _requests = require("../../utils/requests");
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  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
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  function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
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  function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
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- const useVarMean = (varKeys, enabled = false) => {
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+ const useVarMean = function (varKeys) {
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+ let enabled = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : false;
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  const ENDPOINT = "matrix/mean";
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  const dataset = (0, _DatasetContext.useDataset)();
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  const [params, setParams] = (0, _react.useState)({
@@ -49,9 +50,10 @@ const useVarMean = (varKeys, enabled = false) => {
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  // @TODO: display where disease data comes from
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  // add to disease dataset metadata
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- function DiseaseVarList({
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- makeListItem
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- }) {
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+ function DiseaseVarList(_ref) {
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+ let {
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+ makeListItem
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+ } = _ref;
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  const ENDPOINT = "disease/genes";
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  const dataset = (0, _DatasetContext.useDataset)();
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  const dispatch = (0, _DatasetContext.useDatasetDispatch)();
@@ -117,11 +119,12 @@ function DiseaseVarList({
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  className: "position-relative"
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  }, isPending && /*#__PURE__*/_react.default.createElement(_LoadingIndicators.LoadingSpinner, null), /*#__PURE__*/_react.default.createElement(_reactBootstrap.ListGroup, null, diseaseVarList)))));
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  }
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- function VarNamesList({
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- mode = _constants.SELECTION_MODES.SINGLE,
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- displayName = "genes",
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- showDiseaseVarList = true
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- }) {
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+ function VarNamesList(_ref2) {
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+ let {
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+ mode = _constants.SELECTION_MODES.SINGLE,
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+ displayName = "genes",
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+ showDiseaseVarList = true
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+ } = _ref2;
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  const dataset = (0, _DatasetContext.useDataset)();
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  const dispatch = (0, _DatasetContext.useDatasetDispatch)();
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  const [varButtons, setVarButtons] = (0, _react.useState)(mode === _constants.SELECTION_MODES.SINGLE ? dataset.selectedVar ? _lodash.default.unionWith([dataset.selectedVar], dataset.varSets, _lodash.default.isEqual) : [...dataset.varSets] : [...dataset.selectedMultiVar, ...dataset.varSets]);
@@ -192,7 +195,8 @@ function VarNamesList({
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  setSortedVarButtons(varButtons);
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  }
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  }, [dataset.varSort.var.sort, dataset.varSort.var.sortOrder, varButtons, varMeans.isPending, varMeans.serverError, varMeans.fetchedData]);
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- const makeListItem = (item, isDiseaseGene = false) => {
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+ const makeListItem = function (item) {
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+ let isDiseaseGene = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : false;
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  return /*#__PURE__*/_react.default.createElement(_reactBootstrap.ListGroup.Item, {
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  key: item.matrix_index
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  }, /*#__PURE__*/_react.default.createElement(_VarItem.VarItem, {
@@ -14,9 +14,10 @@ var _DatasetContext = require("../../context/DatasetContext");
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  function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
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  function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
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  // @TODO: set option for "var" and "disease"
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- function VarListToolbar({
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- varType = "var"
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- }) {
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+ function VarListToolbar(_ref) {
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+ let {
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+ varType = "var"
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+ } = _ref;
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  const dataset = (0, _DatasetContext.useDataset)();
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  const dispatch = (0, _DatasetContext.useDatasetDispatch)();
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  const [sort, setSort] = (0, _react.useState)(dataset.varSort.var.sort);
@@ -26,14 +26,15 @@ const addVarToSet = (dispatch, set, v) => {
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  var: v
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  });
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  };
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- function SingleSelectionSet({
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- set,
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- isActive,
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- selectSet,
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- removeSet,
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- removeSetVar,
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- showSearchBar = true
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- }) {
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+ function SingleSelectionSet(_ref) {
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+ let {
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+ set,
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+ isActive,
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+ selectSet,
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+ removeSet,
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+ removeSetVar,
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+ showSearchBar = true
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+ } = _ref;
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  const [openSet, setOpenSet] = (0, _react.useState)(false);
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  const varList = set.vars.length ? _lodash.default.map(set.vars, v => {
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  return /*#__PURE__*/_react.default.createElement(_reactBootstrap.ListGroup.Item, {
@@ -99,11 +100,12 @@ function SingleSelectionSet({
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  variant: "flush"
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  }, varList)))));
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  }
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- function MultipleSelectionSet({
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- set,
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- isActive,
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- toggleSet
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- }) {
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+ function MultipleSelectionSet(_ref2) {
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+ let {
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+ set,
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+ isActive,
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+ toggleSet
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+ } = _ref2;
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  return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement("div", {
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  className: "d-flex"
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  }, /*#__PURE__*/_react.default.createElement("div", {
@@ -117,11 +119,12 @@ function MultipleSelectionSet({
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  title: set.name
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  }, set.name))));
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  }
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- function VarSet({
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- set,
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- active,
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- mode = _constants.SELECTION_MODES.SINGLE
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- }) {
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+ function VarSet(_ref3) {
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+ let {
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+ set,
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+ active,
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+ mode = _constants.SELECTION_MODES.SINGLE
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+ } = _ref3;
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  const dataset = (0, _DatasetContext.useDataset)();
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  const dispatch = (0, _DatasetContext.useDatasetDispatch)();
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  const selectSet = () => {
@@ -18,9 +18,10 @@ var _requests = require("../../utils/requests");
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  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
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  function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
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  function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
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- function Violin({
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- mode = _constants.VIOLIN_MODES.MULTIKEY
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- }) {
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+ function Violin(_ref) {
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+ let {
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+ mode = _constants.VIOLIN_MODES.MULTIKEY
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+ } = _ref;
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  const ENDPOINT = "violin";
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  const dataset = (0, _DatasetContext.useDataset)();
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  const {
@@ -44,10 +44,11 @@ const persistOptions = {
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  storage: window.localStorage
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  }),
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  dehydrateOptions: {
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- shouldDehydrateQuery: ({
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- queryKey,
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- state
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- }) => {
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+ shouldDehydrateQuery: _ref => {
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+ let {
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+ queryKey,
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+ state
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+ } = _ref;
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  if (state.status === "success") {
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  return persistKeys.includes(queryKey?.[0]);
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  }
@@ -116,11 +117,12 @@ const initializer = initialState => {
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  const localValues = _lodash.default.pick(localObj, keys);
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  return _lodash.default.assign(initialState, localValues);
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  };
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- function DatasetProvider({
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- dataset_url,
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- children,
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- ...dataset_params
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- }) {
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+ function DatasetProvider(_ref2) {
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+ let {
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+ dataset_url,
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+ children,
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+ ...dataset_params
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+ } = _ref2;
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  const [dataset, dispatch] = (0, _react.useReducer)(datasetReducer, _lodash.default.assign(initializer({
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  url: dataset_url,
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  ...initialDataset
@@ -19,9 +19,10 @@ const initialFilterData = {
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  slicedLength: null,
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  isSliced: false
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  };
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- function FilterProvider({
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- children
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- }) {
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+ function FilterProvider(_ref) {
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+ let {
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+ children
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+ } = _ref;
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  const [filteredData, dispatch] = (0, _react.useReducer)(filterReducer, {
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  ...initialFilterData
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  });
@@ -11,9 +11,10 @@ var _zarrData = require("../utils/zarrData");
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  function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
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  function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
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  const ZarrDataContext = /*#__PURE__*/(0, _react.createContext)(null);
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- function ZarrDataProvider({
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- children
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- }) {
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+ function ZarrDataProvider(_ref) {
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+ let {
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+ children
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+ } = _ref;
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  const obsmData = (0, _zarrData.useObsmData)();
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  const obsData = (0, _zarrData.useObsData)();
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  const xData = (0, _zarrData.useXData)();
@@ -42,17 +42,18 @@ const rgbToHex = color => {
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  exports.rgbToHex = rgbToHex;
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  const useColor = () => {
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  const dataset = (0, _DatasetContext.useDataset)();
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- const getColor = (0, _react.useCallback)(({
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- value,
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- categorical = false,
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- grayOut = false,
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- grayParams: {
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- alpha = 0.75,
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- gray = 0.95
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- } = {},
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- colorEncoding = dataset.colorEncoding,
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- colorscale = null
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- }) => {
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+ const getColor = (0, _react.useCallback)(_ref => {
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+ let {
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+ value,
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+ categorical = false,
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+ grayOut = false,
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+ grayParams: {
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+ alpha = 0.75,
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+ gray = 0.95
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+ } = {},
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+ colorEncoding = dataset.colorEncoding,
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+ colorscale = null
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+ } = _ref;
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  const colormap = colorscale || _colorscales.COLORSCALES[categorical ? "Accent" : dataset.controls.colorScale];
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  if (colorEncoding) {
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  if (grayOut) {
@@ -8,13 +8,14 @@ var _core = require("@deck.gl/core");
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  var _lodash = _interopRequireDefault(require("lodash"));
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  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
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  class MapHelper {
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- fitBounds(coords, {
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- width = 400,
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- height = 600
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- } = {
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- width: 400,
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- height: 600
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- }) {
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+ fitBounds(coords) {
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+ let {
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+ width = 400,
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+ height = 600
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+ } = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : {
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+ width: 400,
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+ height: 600
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+ };
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  let view = new _core.WebMercatorViewport({
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  width: width,
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  height: height,
@@ -10,10 +10,11 @@ var _zarr = require("zarr");
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  const GET_OPTIONS = exports.GET_OPTIONS = {
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  concurrencyLimit: 10,
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  // max number of concurrent requests (default 10)
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- progressCallback: ({
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- progress,
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- queueSize
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- }) => {
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+ progressCallback: _ref => {
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+ let {
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+ progress,
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+ queueSize
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+ } = _ref;
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  console.debug(`${progress / queueSize * 100}% complete.`);
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  } // callback executed after each request
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  };
@@ -41,10 +42,14 @@ const fetchDataFromZarr = async (url, path, s, opts) => {
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  throw error;
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  }
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  };
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- const useZarr = ({
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- url,
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- path
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- }, s = null, options = GET_OPTIONS, opts = {}) => {
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+ const useZarr = function (_ref2) {
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+ let {
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+ url,
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+ path
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+ } = _ref2;
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+ let s = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : null;
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+ let options = arguments.length > 2 && arguments[2] !== undefined ? arguments[2] : GET_OPTIONS;
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+ let opts = arguments.length > 3 && arguments[3] !== undefined ? arguments[3] : {};
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  const {
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  enabled = true
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  } = opts;
@@ -61,9 +66,10 @@ const useZarr = ({
61
66
  return;
62
67
  }
63
68
  },
64
- retry: (failureCount, {
65
- error
66
- }) => {
69
+ retry: (failureCount, _ref3) => {
70
+ let {
71
+ error
72
+ } = _ref3;
67
73
  if ([400, 401, 403, 404, 422].includes(error?.status)) return false;
68
74
  return failureCount < 3;
69
75
  },
@@ -84,7 +90,10 @@ const aggregateData = (inputs, data) => {
84
90
  });
85
91
  return dataObject;
86
92
  };
87
- const useMultipleZarr = (inputs, options = GET_OPTIONS, opts = {}, agg = aggregateData) => {
93
+ const useMultipleZarr = function (inputs) {
94
+ let options = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : GET_OPTIONS;
95
+ let opts = arguments.length > 2 && arguments[2] !== undefined ? arguments[2] : {};
96
+ let agg = arguments.length > 3 && arguments[3] !== undefined ? arguments[3] : aggregateData;
88
97
  const {
89
98
  enabled = true
90
99
  } = opts;
@@ -109,9 +118,10 @@ const useMultipleZarr = (inputs, options = GET_OPTIONS, opts = {}, agg = aggrega
109
118
  return;
110
119
  }
111
120
  },
112
- retry: (failureCount, {
113
- error
114
- }) => {
121
+ retry: (failureCount, _ref4) => {
122
+ let {
123
+ error
124
+ } = _ref4;
115
125
  if ([400, 401, 403, 404, 422].includes(error?.status)) return false;
116
126
  return failureCount < 3;
117
127
  },
@@ -10,11 +10,12 @@ var _lodash = _interopRequireDefault(require("lodash"));
10
10
  var _LoadingIndicators = require("./LoadingIndicators");
11
11
  var _string = require("./string");
12
12
  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
13
- function Histogram({
14
- data,
15
- isPending,
16
- altColor = false
17
- }) {
13
+ function Histogram(_ref) {
14
+ let {
15
+ data,
16
+ isPending,
17
+ altColor = false
18
+ } = _ref;
18
19
  return /*#__PURE__*/_react.default.createElement("div", {
19
20
  className: "feature-histogram-container"
20
21
  }, isPending ? /*#__PURE__*/_react.default.createElement(_LoadingIndicators.LoadingLinear, null) : data ? /*#__PURE__*/_react.default.createElement("div", {
@@ -31,9 +32,12 @@ function Histogram({
31
32
  colors: altColor ? _xCharts.mangoFusionPalette : _xCharts.blueberryTwilightPalette,
32
33
  showHighlight: true,
33
34
  showTooltip: true,
34
- valueFormatter: (v, {
35
- dataIndex
36
- }) => `${(0, _string.formatNumerical)(data.hist[dataIndex])}`,
35
+ valueFormatter: (v, _ref2) => {
36
+ let {
37
+ dataIndex
38
+ } = _ref2;
39
+ return `${(0, _string.formatNumerical)(data.hist[dataIndex])}`;
40
+ },
37
41
  xAxis: {
38
42
  data: _lodash.default.range(data.bin_edges?.length) || null,
39
43
  valueFormatter: v => `Bin [${(0, _string.formatNumerical)(data.bin_edges[v][0], _string.FORMATS.EXPONENTIAL)}, ${(0, _string.formatNumerical)(data.bin_edges[v][1], _string.FORMATS.EXPONENTIAL)}${v === data.bin_edges.length - 1 ? "]" : ")"}`
@@ -8,11 +8,12 @@ var _react = _interopRequireWildcard(require("react"));
8
8
  var _reactBootstrap = require("react-bootstrap");
9
9
  function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
10
10
  function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
11
- const ImageViewer = ({
12
- src,
13
- alt,
14
- className = "img-fluid"
15
- }) => {
11
+ const ImageViewer = _ref => {
12
+ let {
13
+ src,
14
+ alt,
15
+ className = "img-fluid"
16
+ } = _ref;
16
17
  const [error, setError] = (0, _react.useState)(false);
17
18
  const handleError = () => {
18
19
  console.error("Error loading image from src:", src);
@@ -13,13 +13,14 @@ var _colorHelper = require("../helpers/color-helper");
13
13
  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
14
14
  function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
15
15
  function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
16
- function Legend({
17
- isCategorical = false,
18
- min = 0,
19
- max = 1,
20
- colorscale = null,
21
- addText = ""
22
- }) {
16
+ function Legend(_ref) {
17
+ let {
18
+ isCategorical = false,
19
+ min = 0,
20
+ max = 1,
21
+ colorscale = null,
22
+ addText = ""
23
+ } = _ref;
23
24
  const dataset = (0, _DatasetContext.useDataset)();
24
25
  const {
25
26
  getColor
@@ -7,10 +7,11 @@ exports.LoadingSpinner = exports.LoadingLinear = void 0;
7
7
  var _react = _interopRequireDefault(require("react"));
8
8
  var _material = require("@mui/material");
9
9
  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
10
- const LoadingSpinner = ({
11
- text = null,
12
- disableShrink = false
13
- }) => {
10
+ const LoadingSpinner = _ref => {
11
+ let {
12
+ text = null,
13
+ disableShrink = false
14
+ } = _ref;
14
15
  return /*#__PURE__*/_react.default.createElement("div", {
15
16
  className: "loading-spinner"
16
17
  }, /*#__PURE__*/_react.default.createElement(_material.CircularProgress, {
@@ -9,15 +9,16 @@ var _reactVirtual = require("@tanstack/react-virtual");
9
9
  function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
10
10
  function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
11
11
  function _extends() { return _extends = Object.assign ? Object.assign.bind() : function (n) { for (var e = 1; e < arguments.length; e++) { var t = arguments[e]; for (var r in t) ({}).hasOwnProperty.call(t, r) && (n[r] = t[r]); } return n; }, _extends.apply(null, arguments); }
12
- function VirtualizedList({
13
- getDataAtIndex,
14
- count,
15
- ItemComponent,
16
- estimateSize = 45,
17
- overscan = 25,
18
- maxHeight = "80vh",
19
- ...props
20
- }) {
12
+ function VirtualizedList(_ref) {
13
+ let {
14
+ getDataAtIndex,
15
+ count,
16
+ ItemComponent,
17
+ estimateSize = 45,
18
+ overscan = 25,
19
+ maxHeight = "80vh",
20
+ ...props
21
+ } = _ref;
21
22
  const [parentNode, setParentNode] = (0, _react.useState)(null);
22
23
  const itemVirtualizer = (0, _reactVirtual.useVirtualizer)({
23
24
  count: count,
@@ -8,7 +8,10 @@ exports.useFetch = exports.useDebouncedFetch = void 0;
8
8
  var _reactQuery = require("@tanstack/react-query");
9
9
  var _usehooks = require("@uidotdev/usehooks");
10
10
  var _errors = require("./errors");
11
- async function fetchData(endpoint, params, signal = null, ms = 300000, apiUrl = null) {
11
+ async function fetchData(endpoint, params) {
12
+ let signal = arguments.length > 2 && arguments[2] !== undefined ? arguments[2] : null;
13
+ let ms = arguments.length > 3 && arguments[3] !== undefined ? arguments[3] : 300000;
14
+ let apiUrl = arguments.length > 4 && arguments[4] !== undefined ? arguments[4] : null;
12
15
  apiUrl = apiUrl || process.env.REACT_APP_API_URL;
13
16
  const controller = new AbortController();
14
17
  const timeout = setTimeout(() => {
@@ -36,10 +39,12 @@ async function fetchData(endpoint, params, signal = null, ms = 300000, apiUrl =
36
39
  }
37
40
  return await response.json();
38
41
  }
39
- const useFetch = (endpoint, params, opts = {
40
- refetchOnMount: false,
41
- refetchOnWindowFocus: false
42
- }, apiUrl = null) => {
42
+ const useFetch = function (endpoint, params) {
43
+ let opts = arguments.length > 2 && arguments[2] !== undefined ? arguments[2] : {
44
+ refetchOnMount: false,
45
+ refetchOnWindowFocus: false
46
+ };
47
+ let apiUrl = arguments.length > 3 && arguments[3] !== undefined ? arguments[3] : null;
43
48
  const {
44
49
  enabled = true
45
50
  } = opts;
@@ -49,18 +54,20 @@ const useFetch = (endpoint, params, opts = {
49
54
  error: serverError = null
50
55
  } = (0, _reactQuery.useQuery)({
51
56
  queryKey: [endpoint, params],
52
- queryFn: ({
53
- signal
54
- }) => {
57
+ queryFn: _ref => {
58
+ let {
59
+ signal
60
+ } = _ref;
55
61
  if (enabled) {
56
62
  return fetchData(endpoint, params, signal, apiUrl);
57
63
  } else {
58
64
  return;
59
65
  }
60
66
  },
61
- retry: (failureCount, {
62
- error
63
- }) => {
67
+ retry: (failureCount, _ref2) => {
68
+ let {
69
+ error
70
+ } = _ref2;
64
71
  if ([400, 401, 403, 404, 422].includes(error?.status)) return false;
65
72
  return failureCount < 3;
66
73
  },
@@ -73,10 +80,13 @@ const useFetch = (endpoint, params, opts = {
73
80
  };
74
81
  };
75
82
  exports.useFetch = useFetch;
76
- const useDebouncedFetch = (endpoint, params, delay = 500, opts = {
77
- refetchOnMount: false,
78
- refetchOnWindowFocus: false
79
- }, apiUrl = null) => {
83
+ const useDebouncedFetch = function (endpoint, params) {
84
+ let delay = arguments.length > 2 && arguments[2] !== undefined ? arguments[2] : 500;
85
+ let opts = arguments.length > 3 && arguments[3] !== undefined ? arguments[3] : {
86
+ refetchOnMount: false,
87
+ refetchOnWindowFocus: false
88
+ };
89
+ let apiUrl = arguments.length > 4 && arguments[4] !== undefined ? arguments[4] : null;
80
90
  const {
81
91
  enabled = true
82
92
  } = opts;
@@ -87,18 +97,20 @@ const useDebouncedFetch = (endpoint, params, delay = 500, opts = {
87
97
  error: serverError = null
88
98
  } = (0, _reactQuery.useQuery)({
89
99
  queryKey: [endpoint, debouncedParams],
90
- queryFn: ({
91
- signal
92
- }) => {
100
+ queryFn: _ref3 => {
101
+ let {
102
+ signal
103
+ } = _ref3;
93
104
  if (enabled) {
94
105
  return fetchData(endpoint, debouncedParams, signal, apiUrl);
95
106
  } else {
96
107
  return;
97
108
  }
98
109
  },
99
- retry: (failureCount, {
100
- error
101
- }) => {
110
+ retry: (failureCount, _ref4) => {
111
+ let {
112
+ error
113
+ } = _ref4;
102
114
  if ([400, 401, 403, 404, 422].includes(error?.status)) return false;
103
115
  return failureCount < 3;
104
116
  },
@@ -13,28 +13,33 @@ const FORMATS = exports.FORMATS = {
13
13
  ABBREVIATION: "abbreviation",
14
14
  THOUSAND: "thousand"
15
15
  };
16
- function formatThousand(n, precision = 3) {
16
+ function formatThousand(n) {
17
+ let precision = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : 3;
17
18
  return (0, _numbro.default)(n).format({
18
19
  thousandSeparated: true,
19
20
  mantissa: precision,
20
21
  trimMantissa: true
21
22
  });
22
23
  }
23
- function formatExponential(n, precision = 3) {
24
+ function formatExponential(n) {
25
+ let precision = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : 3;
24
26
  return (0, _numbro.default)(n).format({
25
27
  exponential: true,
26
28
  mantissa: precision,
27
29
  trimMantissa: true
28
30
  });
29
31
  }
30
- function formatAbbreviation(n, precision = 3) {
32
+ function formatAbbreviation(n) {
33
+ let precision = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : 3;
31
34
  return (0, _numbro.default)(n).format({
32
35
  average: true,
33
36
  mantissa: precision,
34
37
  trimMantissa: true
35
38
  }).toUpperCase();
36
39
  }
37
- function formatNumerical(n, format = FORMATS.THOUSAND, precision = 3) {
40
+ function formatNumerical(n) {
41
+ let format = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : FORMATS.THOUSAND;
42
+ let precision = arguments.length > 2 && arguments[2] !== undefined ? arguments[2] : 3;
38
43
  if (n === 0) {
39
44
  return "0";
40
45
  } else if (!n || n === undefined || isNaN(n)) {
@@ -10,7 +10,8 @@ var _constants = require("../constants/constants");
10
10
  var _DatasetContext = require("../context/DatasetContext");
11
11
  var _zarrHelper = require("../helpers/zarr-helper");
12
12
  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
13
- const useObsmData = (obsm = null) => {
13
+ const useObsmData = function () {
14
+ let obsm = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : null;
14
15
  const dataset = (0, _DatasetContext.useDataset)();
15
16
  obsm = obsm || dataset.selectedObsm;
16
17
  const [obsmParams, setObsmParams] = (0, _react.useState)({
@@ -29,9 +30,15 @@ const useObsmData = (obsm = null) => {
29
30
  };
30
31
  exports.useObsmData = useObsmData;
31
32
  const meanData = (_i, data) => {
32
- return _lodash.default.zipWith(...data, (...values) => _lodash.default.mean(values));
33
+ return _lodash.default.zipWith(...data, function () {
34
+ for (var _len = arguments.length, values = new Array(_len), _key = 0; _key < _len; _key++) {
35
+ values[_key] = arguments[_key];
36
+ }
37
+ return _lodash.default.mean(values);
38
+ });
33
39
  };
34
- const useXData = (agg = meanData) => {
40
+ const useXData = function () {
41
+ let agg = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : meanData;
35
42
  const dataset = (0, _DatasetContext.useDataset)();
36
43
  const [xParams, setXParams] = (0, _react.useState)(!dataset.selectedVar ? [] : !dataset.selectedVar?.isSet ? [{
37
44
  url: dataset.url,
@@ -62,7 +69,8 @@ const useXData = (agg = meanData) => {
62
69
  }, agg);
63
70
  };
64
71
  exports.useXData = useXData;
65
- const useObsData = (obs = null) => {
72
+ const useObsData = function () {
73
+ let obs = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : null;
66
74
  const dataset = (0, _DatasetContext.useDataset)();
67
75
  obs = obs || dataset.selectedObs;
68
76
  const [obsParams, setObsParams] = (0, _react.useState)({