@haniffalab/cherita-react 1.0.0-dev.2025-03-13.73606a74 → 1.0.0-dev.2025-03-13.274a553c

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (99) hide show
  1. package/dist/{components → cjs/components}/full-page/FullPage.js +6 -5
  2. package/dist/{components → cjs/components}/full-page/FullPagePseudospatial.js +6 -5
  3. package/dist/{components → cjs/components}/obs-list/ObsItem.js +50 -46
  4. package/dist/{components → cjs/components}/obs-list/ObsList.js +9 -7
  5. package/dist/{components → cjs/components}/obs-list/ObsToolbar.js +12 -11
  6. package/dist/{components → cjs/components}/offcanvas/index.js +24 -20
  7. package/dist/{components → cjs/components}/pseudospatial/Pseudospatial.js +9 -8
  8. package/dist/{components → cjs/components}/pseudospatial/PseudospatialToolbar.js +4 -3
  9. package/dist/{components → cjs/components}/scatterplot/Scatterplot.js +31 -22
  10. package/dist/{components → cjs/components}/scatterplot/SpatialControls.js +11 -10
  11. package/dist/{components → cjs/components}/scatterplot/Toolbox.js +6 -5
  12. package/dist/{components → cjs/components}/search-bar/SearchBar.js +6 -5
  13. package/dist/{components → cjs/components}/search-bar/SearchResults.js +13 -17
  14. package/dist/{components → cjs/components}/var-list/VarItem.js +32 -27
  15. package/dist/{components → cjs/components}/var-list/VarList.js +14 -10
  16. package/dist/{components → cjs/components}/var-list/VarListToolbar.js +4 -3
  17. package/dist/{components → cjs/components}/var-list/VarSet.js +21 -18
  18. package/dist/{components → cjs/components}/violin/Violin.js +4 -3
  19. package/dist/{context → cjs/context}/DatasetContext.js +11 -9
  20. package/dist/{context → cjs/context}/FilterContext.js +4 -3
  21. package/dist/{context → cjs/context}/ZarrDataContext.js +4 -3
  22. package/dist/{helpers → cjs/helpers}/color-helper.js +12 -11
  23. package/dist/{helpers → cjs/helpers}/map-helper.js +8 -7
  24. package/dist/{helpers → cjs/helpers}/zarr-helper.js +25 -15
  25. package/dist/{utils → cjs/utils}/Histogram.js +12 -8
  26. package/dist/{utils → cjs/utils}/ImageViewer.js +6 -5
  27. package/dist/{utils → cjs/utils}/Legend.js +8 -7
  28. package/dist/{utils → cjs/utils}/LoadingIndicators.js +5 -4
  29. package/dist/{utils → cjs/utils}/VirtualizedList.js +10 -9
  30. package/dist/{utils → cjs/utils}/requests.js +33 -21
  31. package/dist/{utils → cjs/utils}/string.js +9 -4
  32. package/dist/{utils → cjs/utils}/zarrData.js +12 -4
  33. package/dist/css/cherita.css +10 -0
  34. package/dist/css/cherita.css.map +1 -1
  35. package/dist/esm/components/dotplot/Dotplot.js +135 -0
  36. package/dist/esm/components/dotplot/DotplotControls.js +148 -0
  37. package/dist/esm/components/full-page/FullPage.js +134 -0
  38. package/dist/esm/components/full-page/FullPagePseudospatial.js +151 -0
  39. package/dist/esm/components/heatmap/Heatmap.js +105 -0
  40. package/dist/esm/components/heatmap/HeatmapControls.js +23 -0
  41. package/dist/esm/components/matrixplot/Matrixplot.js +107 -0
  42. package/dist/esm/components/matrixplot/MatrixplotControls.js +38 -0
  43. package/dist/esm/components/obs-list/ObsItem.js +477 -0
  44. package/dist/esm/components/obs-list/ObsList.js +256 -0
  45. package/dist/esm/components/obs-list/ObsToolbar.js +58 -0
  46. package/dist/esm/components/obsm-list/ObsmList.js +72 -0
  47. package/dist/esm/components/offcanvas/index.js +67 -0
  48. package/dist/esm/components/pseudospatial/Pseudospatial.js +228 -0
  49. package/dist/esm/components/pseudospatial/PseudospatialToolbar.js +123 -0
  50. package/dist/esm/components/scatterplot/Scatterplot.js +394 -0
  51. package/dist/esm/components/scatterplot/ScatterplotControls.js +71 -0
  52. package/dist/esm/components/scatterplot/SpatialControls.js +140 -0
  53. package/dist/esm/components/scatterplot/Toolbox.js +25 -0
  54. package/dist/esm/components/search-bar/SearchBar.js +74 -0
  55. package/dist/esm/components/search-bar/SearchResults.js +139 -0
  56. package/dist/esm/components/var-list/VarItem.js +250 -0
  57. package/dist/esm/components/var-list/VarList.js +267 -0
  58. package/dist/esm/components/var-list/VarListToolbar.js +84 -0
  59. package/dist/esm/components/var-list/VarSet.js +193 -0
  60. package/dist/esm/components/violin/Violin.js +141 -0
  61. package/dist/esm/components/violin/ViolinControls.js +24 -0
  62. package/dist/esm/constants/colorscales.js +22 -0
  63. package/dist/esm/constants/constants.js +84 -0
  64. package/dist/esm/context/DatasetContext.js +572 -0
  65. package/dist/esm/context/FilterContext.js +48 -0
  66. package/dist/esm/context/ZarrDataContext.js +26 -0
  67. package/dist/esm/helpers/color-helper.js +66 -0
  68. package/dist/esm/helpers/map-helper.js +53 -0
  69. package/dist/esm/helpers/zarr-helper.js +129 -0
  70. package/dist/esm/index.js +22 -0
  71. package/dist/esm/utils/Filter.js +147 -0
  72. package/dist/esm/utils/Histogram.js +44 -0
  73. package/dist/esm/utils/ImageViewer.js +27 -0
  74. package/dist/esm/utils/Legend.js +58 -0
  75. package/dist/esm/utils/LoadingIndicators.js +22 -0
  76. package/dist/esm/utils/VirtualizedList.js +55 -0
  77. package/dist/esm/utils/errors.js +47 -0
  78. package/dist/esm/utils/requests.js +116 -0
  79. package/dist/esm/utils/search.js +39 -0
  80. package/dist/esm/utils/string.js +59 -0
  81. package/dist/esm/utils/zarrData.js +102 -0
  82. package/package.json +16 -5
  83. package/scss/cherita.scss +10 -0
  84. package/scss/components/layouts.scss +1 -0
  85. /package/dist/{components → cjs/components}/dotplot/Dotplot.js +0 -0
  86. /package/dist/{components → cjs/components}/dotplot/DotplotControls.js +0 -0
  87. /package/dist/{components → cjs/components}/heatmap/Heatmap.js +0 -0
  88. /package/dist/{components → cjs/components}/heatmap/HeatmapControls.js +0 -0
  89. /package/dist/{components → cjs/components}/matrixplot/Matrixplot.js +0 -0
  90. /package/dist/{components → cjs/components}/matrixplot/MatrixplotControls.js +0 -0
  91. /package/dist/{components → cjs/components}/obsm-list/ObsmList.js +0 -0
  92. /package/dist/{components → cjs/components}/scatterplot/ScatterplotControls.js +0 -0
  93. /package/dist/{components → cjs/components}/violin/ViolinControls.js +0 -0
  94. /package/dist/{constants → cjs/constants}/colorscales.js +0 -0
  95. /package/dist/{constants → cjs/constants}/constants.js +0 -0
  96. /package/dist/{index.js → cjs/index.js} +0 -0
  97. /package/dist/{utils → cjs/utils}/Filter.js +0 -0
  98. /package/dist/{utils → cjs/utils}/errors.js +0 -0
  99. /package/dist/{utils → cjs/utils}/search.js +0 -0
@@ -23,11 +23,12 @@ var _Violin = require("../violin/Violin");
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  function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
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  function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
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  function _extends() { return _extends = Object.assign ? Object.assign.bind() : function (n) { for (var e = 1; e < arguments.length; e++) { var t = arguments[e]; for (var r in t) ({}).hasOwnProperty.call(t, r) && (n[r] = t[r]); } return n; }, _extends.apply(null, arguments); }
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- function FullPage({
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- children,
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- varMode = _constants.SELECTION_MODES.SINGLE,
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- ...props
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- }) {
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+ function FullPage(_ref) {
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+ let {
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+ children,
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+ varMode = _constants.SELECTION_MODES.SINGLE,
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+ ...props
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+ } = _ref;
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  const appRef = (0, _react.useRef)();
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  const [appDimensions, setAppDimensions] = (0, _react.useState)({
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  width: 0,
@@ -21,11 +21,12 @@ var _SearchBar = require("../search-bar/SearchBar");
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  var _VarList = require("../var-list/VarList");
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  function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
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  function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
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- function FullPage({
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- children,
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- varMode = _constants.SELECTION_MODES.SINGLE,
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- ...props
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- }) {
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+ function FullPage(_ref) {
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+ let {
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+ children,
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+ varMode = _constants.SELECTION_MODES.SINGLE,
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+ ...props
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+ } = _ref;
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  const appRef = (0, _react.useRef)();
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  const [appDimensions, setAppDimensions] = (0, _react.useState)({
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  width: 0,
@@ -121,30 +121,31 @@ const useFilteredObsData = obs => {
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  pct: pct
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  };
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  };
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- function CategoricalItem({
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- value,
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- label,
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- code,
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- stats = {
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- value_counts: null,
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- pct: null
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- },
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- isOmitted,
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- min,
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- max,
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- onChange,
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- histogramData = {
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- data: null,
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- isPending: false,
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- altColor: false
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- },
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- filteredStats = {
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- value_counts: null,
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- pct: null
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- },
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- isSliced,
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- showColor = true
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- }) {
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+ function CategoricalItem(_ref) {
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+ let {
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+ value,
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+ label,
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+ code,
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+ stats = {
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+ value_counts: null,
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+ pct: null
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+ },
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+ isOmitted,
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+ min,
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+ max,
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+ onChange,
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+ histogramData = {
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+ data: null,
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+ isPending: false,
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+ altColor: false
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+ },
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+ filteredStats = {
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+ value_counts: null,
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+ pct: null
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+ },
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+ isSliced,
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+ showColor = true
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+ } = _ref;
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  const {
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  getColor
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  } = (0, _colorHelper.useColor)();
@@ -238,16 +239,17 @@ function CategoricalItem({
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  })})`
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  }))) : null)));
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  }
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- function CategoricalObs({
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- obs,
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- updateObs,
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- toggleAll,
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- toggleObs,
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- toggleLabel,
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- toggleSlice,
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- toggleColor,
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- showColor = true
250
- }) {
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+ function CategoricalObs(_ref2) {
243
+ let {
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+ obs,
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+ updateObs,
246
+ toggleAll,
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+ toggleObs,
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+ toggleLabel,
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+ toggleSlice,
250
+ toggleColor,
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+ showColor = true
252
+ } = _ref2;
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  const dataset = (0, _DatasetContext.useDataset)();
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  const {
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  isSliced
@@ -321,9 +323,10 @@ function CategoricalObs({
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  showColor: showColor
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  }));
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  }
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- function ObsContinuousStats({
325
- obs
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- }) {
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+ function ObsContinuousStats(_ref3) {
327
+ let {
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+ obs
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+ } = _ref3;
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  const ENDPOINT = "obs/distribution";
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  const dataset = (0, _DatasetContext.useDataset)();
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  const params = {
@@ -380,15 +383,16 @@ function ObsContinuousStats({
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  }
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  }))));
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  }
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- function ContinuousObs({
384
- obs,
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- updateObs,
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- toggleAll,
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- toggleObs,
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- toggleLabel,
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- toggleSlice,
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- toggleColor
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- }) {
386
+ function ContinuousObs(_ref4) {
387
+ let {
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+ obs,
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+ updateObs,
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+ toggleAll,
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+ toggleObs,
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+ toggleLabel,
393
+ toggleSlice,
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+ toggleColor
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+ } = _ref4;
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  const ENDPOINT = "obs/bins";
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  const dataset = (0, _DatasetContext.useDataset)();
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  const {
@@ -20,9 +20,10 @@ var _requests = require("../../utils/requests");
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  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
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  function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
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  function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
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- function ObsColsList({
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- showColor = true
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- }) {
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+ function ObsColsList(_ref) {
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+ let {
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+ showColor = true
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+ } = _ref;
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  const ENDPOINT = "obs/cols";
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  const dataset = (0, _DatasetContext.useDataset)();
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  const dispatch = (0, _DatasetContext.useDatasetDispatch)();
@@ -178,10 +179,11 @@ function ObsColsList({
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  });
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  }
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  };
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- function ObsAccordionToggle({
182
- children,
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- eventKey
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- }) {
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+ function ObsAccordionToggle(_ref2) {
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+ let {
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+ children,
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+ eventKey
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+ } = _ref2;
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  const {
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  activeEventKey
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  } = (0, _react.useContext)(_AccordionContext.default);
@@ -12,17 +12,18 @@ var _reactBootstrap = require("react-bootstrap");
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  var _constants = require("../../constants/constants");
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  var _DatasetContext = require("../../context/DatasetContext");
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  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
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- function ObsToolbar({
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- item,
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- showToggleAllObs = true,
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- showLabel = true,
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- showSlice = true,
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- showColor = true,
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- onToggleAllObs,
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- onToggleLabel,
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- onToggleSlice,
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- onToggleColor
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- }) {
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+ function ObsToolbar(_ref) {
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+ let {
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+ item,
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+ showToggleAllObs = true,
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+ showLabel = true,
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+ showSlice = true,
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+ showColor = true,
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+ onToggleAllObs,
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+ onToggleLabel,
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+ onToggleSlice,
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+ onToggleColor
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+ } = _ref;
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  const dataset = (0, _DatasetContext.useDataset)();
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  const allToggledOn = !item.omit.length;
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  const inLabelObs = _lodash.default.some(dataset.labelObs, i => i.name === item.name);
@@ -15,11 +15,12 @@ var _ObsmList = require("../obsm-list/ObsmList");
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  var _SearchBar = require("../search-bar/SearchBar");
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  var _VarList = require("../var-list/VarList");
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  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
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- function OffcanvasObs({
19
- show,
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- handleClose,
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- ...props
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- }) {
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+ function OffcanvasObs(_ref) {
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+ let {
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+ show,
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+ handleClose,
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+ ...props
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+ } = _ref;
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  return /*#__PURE__*/_react.default.createElement(_Offcanvas.default, {
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  show: show,
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  onHide: handleClose,
@@ -31,10 +32,11 @@ function OffcanvasObs({
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  className: "p-0"
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  }, /*#__PURE__*/_react.default.createElement(_ObsList.ObsColsList, props)));
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  }
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- function OffcanvasObsm({
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- show,
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- handleClose
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- }) {
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+ function OffcanvasObsm(_ref2) {
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+ let {
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+ show,
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+ handleClose
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+ } = _ref2;
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  return /*#__PURE__*/_react.default.createElement(_Offcanvas.default, {
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  show: show,
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  onHide: handleClose
@@ -42,11 +44,12 @@ function OffcanvasObsm({
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  closeButton: true
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  }, /*#__PURE__*/_react.default.createElement(_Offcanvas.default.Title, null, "Embedding space")), /*#__PURE__*/_react.default.createElement(_Offcanvas.default.Body, null, /*#__PURE__*/_react.default.createElement(_ObsmList.ObsmKeysList, null)));
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  }
45
- function OffcanvasVars({
46
- show,
47
- handleClose,
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- mode = _constants.SELECTION_MODES.MULTIPLE
49
- }) {
47
+ function OffcanvasVars(_ref3) {
48
+ let {
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+ show,
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+ handleClose,
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+ mode = _constants.SELECTION_MODES.MULTIPLE
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+ } = _ref3;
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  return /*#__PURE__*/_react.default.createElement(_Offcanvas.default, {
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  show: show,
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  onHide: handleClose
@@ -58,12 +61,13 @@ function OffcanvasVars({
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  mode: mode
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  })));
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  }
61
- function OffcanvasControls({
62
- show,
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- handleClose,
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- Controls,
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- ...props
66
- }) {
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+ function OffcanvasControls(_ref4) {
65
+ let {
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+ show,
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+ handleClose,
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+ Controls,
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+ ...props
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+ } = _ref4;
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  return /*#__PURE__*/_react.default.createElement(_Offcanvas.default, {
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  show: show,
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  onHide: handleClose
@@ -76,14 +76,15 @@ function usePseudospatialData(plotType) {
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  enabled: !!plotType && !!dataset.pseudospatial.maskSet
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  });
78
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  }
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- function Pseudospatial({
80
- showLegend = true,
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- sharedScaleRange = false,
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- height = 200,
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- setShowControls,
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- plotType,
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- setPlotType
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- }) {
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+ function Pseudospatial(_ref) {
80
+ let {
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+ showLegend = true,
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+ sharedScaleRange = false,
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+ height = 200,
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+ setShowControls,
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+ plotType,
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+ setPlotType
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+ } = _ref;
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  const dataset = (0, _DatasetContext.useDataset)();
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  const [data, setData] = (0, _react.useState)([]);
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  const [layout, setLayout] = (0, _react.useState)({});
@@ -122,9 +122,10 @@ function MaskSet() {
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  }
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  // @TODO: add colormap, colorbar slider
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- function PseudospatialToolbar({
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- plotType
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- }) {
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+ function PseudospatialToolbar(_ref) {
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+ let {
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+ plotType
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+ } = _ref;
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  return /*#__PURE__*/_react.default.createElement("div", {
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  className: "cherita-pseudospatial-toolbar"
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  }, /*#__PURE__*/_react.default.createElement(_reactBootstrap.ButtonGroup, null, /*#__PURE__*/_react.default.createElement(MaskSet, null)), /*#__PURE__*/_react.default.createElement(_reactBootstrap.ButtonGroup, null, plotType === _constants.PSEUDOSPATIAL_PLOT_TYPES.CATEGORICAL && /*#__PURE__*/_react.default.createElement(CategoricalMode, null)));
@@ -37,9 +37,10 @@ const INITIAL_VIEW_STATE = {
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  pitch: 0,
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  bearing: 0
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  };
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- function Scatterplot({
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- radius = 30
42
- }) {
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+ function Scatterplot(_ref) {
41
+ let {
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+ radius = 30
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+ } = _ref;
43
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  const dataset = (0, _DatasetContext.useDataset)();
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  const {
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  obsIndices,
@@ -204,9 +205,10 @@ function Scatterplot({
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  min: dataset.controls.range[0] * (valueMax - valueMin) + valueMin,
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  max: dataset.controls.range[1] * (valueMax - valueMin) + valueMin
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  };
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- const getFillColor = (0, _react.useCallback)((_d, {
208
- index
209
- }) => {
208
+ const getFillColor = (0, _react.useCallback)((_d, _ref2) => {
209
+ let {
210
+ index
211
+ } = _ref2;
210
212
  const grayOut = obsIndices && !obsIndices.has(index);
211
213
  return getColor({
212
214
  value: (data.values[index] - min) / (max - min),
@@ -216,9 +218,10 @@ function Scatterplot({
216
218
  }, [data.values, obsIndices, getColor, isCategorical, max, min]);
217
219
 
218
220
  // @TODO: add support for pseudospatial hover to reflect in radius
219
- const getRadius = (0, _react.useCallback)((_d, {
220
- index
221
- }) => {
221
+ const getRadius = (0, _react.useCallback)((_d, _ref3) => {
222
+ let {
223
+ index
224
+ } = _ref3;
222
225
  const grayOut = obsIndices && !obsIndices.has(index);
223
226
  return grayOut ? 1 : 3;
224
227
  }, [obsIndices]);
@@ -241,11 +244,12 @@ function Scatterplot({
241
244
  data: features,
242
245
  mode: mode,
243
246
  selectedFeatureIndexes,
244
- onEdit: ({
245
- updatedData,
246
- editType,
247
- editContext
248
- }) => {
247
+ onEdit: _ref4 => {
248
+ let {
249
+ updatedData,
250
+ editType,
251
+ editContext
252
+ } = _ref4;
249
253
  setFeatures(updatedData);
250
254
  let updatedSelectedFeatureIndexes = selectedFeatureIndexes;
251
255
  if (editType === "addFeature") {
@@ -293,17 +297,19 @@ function Scatterplot({
293
297
  }
294
298
  setSelectedFeatureIndexes(f => info.object ? info.layer.id === "cherita-layer-draw" ? [info.index] : f : []);
295
299
  }
296
- const getLabel = (o, v, isVar = false) => {
300
+ const getLabel = function (o, v) {
301
+ let isVar = arguments.length > 2 && arguments[2] !== undefined ? arguments[2] : false;
297
302
  if (isVar || o.type === _constants.OBS_TYPES.CONTINUOUS) {
298
303
  return `${o.name}: ${(0, _string.formatNumerical)(parseFloat(v))}`;
299
304
  } else {
300
305
  return `${o.name}: ${o.codesMap[v]}`;
301
306
  }
302
307
  };
303
- const getTooltip = ({
304
- object,
305
- index
306
- }) => {
308
+ const getTooltip = _ref5 => {
309
+ let {
310
+ object,
311
+ index
312
+ } = _ref5;
307
313
  if (!object || object?.type === "Feature") return;
308
314
  const text = [];
309
315
  if (dataset.colorEncoding === _constants.COLOR_ENCODINGS.OBS && dataset.selectedObs && !_lodash.default.some(dataset.labelObs, {
@@ -355,9 +361,12 @@ function Scatterplot({
355
361
  setIsRendering(false);
356
362
  },
357
363
  useDevicePixels: false,
358
- getCursor: ({
359
- isDragging
360
- }) => mode !== _editModes.ViewMode ? "crosshair" : isDragging ? "grabbing" : "grab",
364
+ getCursor: _ref6 => {
365
+ let {
366
+ isDragging
367
+ } = _ref6;
368
+ return mode !== _editModes.ViewMode ? "crosshair" : isDragging ? "grabbing" : "grab";
369
+ },
361
370
  ref: deckRef
362
371
  }), /*#__PURE__*/_react.default.createElement(_SpatialControls.SpatialControls, {
363
372
  mode: mode,
@@ -19,16 +19,17 @@ var _offcanvas = require("../offcanvas");
19
19
  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
20
20
  function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
21
21
  function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
22
- function SpatialControls({
23
- mode,
24
- setMode,
25
- features,
26
- setFeatures,
27
- selectedFeatureIndexes,
28
- resetBounds,
29
- increaseZoom,
30
- decreaseZoom
31
- }) {
22
+ function SpatialControls(_ref) {
23
+ let {
24
+ mode,
25
+ setMode,
26
+ features,
27
+ setFeatures,
28
+ selectedFeatureIndexes,
29
+ resetBounds,
30
+ increaseZoom,
31
+ decreaseZoom
32
+ } = _ref;
32
33
  const dataset = (0, _DatasetContext.useDataset)();
33
34
  const dispatch = (0, _DatasetContext.useDatasetDispatch)();
34
35
  const [showControls, setShowControls] = (0, _react.useState)(false);
@@ -12,11 +12,12 @@ var _ButtonGroup = _interopRequireDefault(require("react-bootstrap/ButtonGroup")
12
12
  var _string = require("../../utils/string");
13
13
  var _ObsmList = require("../obsm-list/ObsmList");
14
14
  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
15
- function Toolbox({
16
- mode,
17
- obsLength,
18
- slicedLength
19
- }) {
15
+ function Toolbox(_ref) {
16
+ let {
17
+ mode,
18
+ obsLength,
19
+ slicedLength
20
+ } = _ref;
20
21
  return /*#__PURE__*/_react.default.createElement("div", {
21
22
  className: "cherita-toolbox"
22
23
  }, /*#__PURE__*/_react.default.createElement(_ButtonGroup.default, null, /*#__PURE__*/_react.default.createElement(_ObsmList.ObsmKeysList, null), /*#__PURE__*/_react.default.createElement(_Button.default, {
@@ -25,11 +25,12 @@ function onVarSelect(dispatch, item) {
25
25
  value: "var"
26
26
  });
27
27
  }
28
- function SearchBar({
29
- searchVar = true,
30
- searchDiseases = false,
31
- handleSelect = onVarSelect
32
- }) {
28
+ function SearchBar(_ref) {
29
+ let {
30
+ searchVar = true,
31
+ searchDiseases = false,
32
+ handleSelect = onVarSelect
33
+ } = _ref;
33
34
  const [showSuggestions, setShowSuggestions] = (0, _react.useState)(false);
34
35
  const [text, setText] = (0, _react.useState)("");
35
36
  const inputRef = (0, _react.useRef)(null);
@@ -13,11 +13,12 @@ var _search = require("../../utils/search");
13
13
  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
14
14
  function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
15
15
  function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
16
- function VarSearchResults({
17
- text,
18
- setShowSuggestions,
19
- handleSelect
20
- }) {
16
+ function VarSearchResults(_ref) {
17
+ let {
18
+ text,
19
+ setShowSuggestions,
20
+ handleSelect
21
+ } = _ref;
21
22
  const [suggestions, setSuggestions] = (0, _react.useState)([]);
22
23
  const dispatch = (0, _DatasetContext.useDatasetDispatch)();
23
24
  const {
@@ -71,20 +72,18 @@ function VarSearchResults({
71
72
  });
72
73
  }, [deferredData, dispatch, handleSelect, isStale, setShowSuggestions]);
73
74
  return /*#__PURE__*/_react.default.createElement("div", null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.Header, null, "Features"), /*#__PURE__*/_react.default.createElement("div", {
74
- style: {
75
- maxHeight: "25vh",
76
- overflowY: "scroll"
77
- }
75
+ className: "search-results"
78
76
  }, deferredData?.length ? suggestionsList : /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.Item, {
79
77
  key: "empty",
80
78
  as: "button",
81
79
  disabled: true
82
80
  }, !serverError ? isStale || isPending ? "Loading..." : "No items found" : "Failed to fetch data")));
83
81
  }
84
- function DiseasesSearchResults({
85
- text,
86
- setShowSuggestions
87
- }) {
82
+ function DiseasesSearchResults(_ref2) {
83
+ let {
84
+ text,
85
+ setShowSuggestions
86
+ } = _ref2;
88
87
  const [suggestions, setSuggestions] = (0, _react.useState)([]);
89
88
  const dispatch = (0, _DatasetContext.useDatasetDispatch)();
90
89
  const {
@@ -141,10 +140,7 @@ function DiseasesSearchResults({
141
140
  });
142
141
  }, [deferredData, dispatch, isStale, setShowSuggestions]);
143
142
  return /*#__PURE__*/_react.default.createElement("div", null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.Header, null, "Diseases"), /*#__PURE__*/_react.default.createElement("div", {
144
- style: {
145
- maxHeight: "25vh",
146
- overflowY: "scroll"
147
- }
143
+ className: "search-results"
148
144
  }, deferredData?.length ? suggestionsList : /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.Item, {
149
145
  key: "empty",
150
146
  as: "button",
@@ -20,9 +20,10 @@ var _VirtualizedList = require("../../utils/VirtualizedList");
20
20
  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
21
21
  function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
22
22
  function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
23
- function VarHistogram({
24
- item
25
- }) {
23
+ function VarHistogram(_ref) {
24
+ let {
25
+ item
26
+ } = _ref;
26
27
  const ENDPOINT = "var/histograms";
27
28
  const dataset = (0, _DatasetContext.useDataset)();
28
29
  const {
@@ -80,9 +81,10 @@ function VarDiseaseInfoItem(item) {
80
81
  }
81
82
  })))));
82
83
  }
83
- function VarDiseaseInfo({
84
- data
85
- }) {
84
+ function VarDiseaseInfo(_ref2) {
85
+ let {
86
+ data
87
+ } = _ref2;
86
88
  return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.ListGroup, null, /*#__PURE__*/_react.default.createElement(_VirtualizedList.VirtualizedList, {
87
89
  getDataAtIndex: index => data[index],
88
90
  count: data.length,
@@ -91,15 +93,16 @@ function VarDiseaseInfo({
91
93
  ItemComponent: VarDiseaseInfoItem
92
94
  })));
93
95
  }
94
- function SingleSelectionItem({
95
- item,
96
- isActive,
97
- selectVar,
98
- removeVar,
99
- isDiseaseGene = false,
100
- showSetColorEncoding = true,
101
- showRemove = true
102
- }) {
96
+ function SingleSelectionItem(_ref3) {
97
+ let {
98
+ item,
99
+ isActive,
100
+ selectVar,
101
+ removeVar,
102
+ isDiseaseGene = false,
103
+ showSetColorEncoding = true,
104
+ showRemove = true
105
+ } = _ref3;
103
106
  const ENDPOINT = "disease/gene";
104
107
  const [openInfo, setOpenInfo] = (0, _react.useState)(false);
105
108
  const dataset = (0, _DatasetContext.useDataset)();
@@ -160,11 +163,12 @@ function SingleSelectionItem({
160
163
  data: fetchedData
161
164
  }))));
162
165
  }
163
- function MultipleSelectionItem({
164
- item,
165
- isActive,
166
- toggleVar
167
- }) {
166
+ function MultipleSelectionItem(_ref4) {
167
+ let {
168
+ item,
169
+ isActive,
170
+ toggleVar
171
+ } = _ref4;
168
172
  const isNotInData = item.matrix_index === -1;
169
173
  return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement("div", {
170
174
  className: "d-flex"
@@ -180,13 +184,14 @@ function MultipleSelectionItem({
180
184
  title: isNotInData ? "Not present in data" : item.name
181
185
  }, item.name))));
182
186
  }
183
- function VarItem({
184
- item,
185
- active,
186
- setVarButtons,
187
- mode = _constants.SELECTION_MODES.SINGLE,
188
- isDiseaseGene = false
189
- }) {
187
+ function VarItem(_ref5) {
188
+ let {
189
+ item,
190
+ active,
191
+ setVarButtons,
192
+ mode = _constants.SELECTION_MODES.SINGLE,
193
+ isDiseaseGene = false
194
+ } = _ref5;
190
195
  const dataset = (0, _DatasetContext.useDataset)();
191
196
  const dispatch = (0, _DatasetContext.useDatasetDispatch)();
192
197
  const selectVar = () => {