@haniffalab/cherita-react 0.2.0-dev.2024-05-22.5ce64346 → 0.2.0-dev.2024-09-26.775b9a06

package/dist/components/obs-list/ObsValueList.js

@@ -0,0 +1,101 @@
+"use strict";
+
+Object.defineProperty(exports, "__esModule", {
+  value: true
+});
+exports.ObsValueList = ObsValueList;
+var _react = _interopRequireWildcard(require("react"));
+var _reactVirtual = require("@tanstack/react-virtual");
+var _lodash = _interopRequireDefault(require("lodash"));
+var _reactBootstrap = require("react-bootstrap");
+var _jsxRuntime = require("react/jsx-runtime");
+function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
+function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
+function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
+function ObsValueList(_ref) {
+  var _virtualItems$0$start, _virtualItems$;
+  let {
+    item,
+    onChange,
+    getFillColor
+  } = _ref;
+  const [parentNode, setParentNode] = (0, _react.useState)(null);
+  const valueVirtualizer = (0, _reactVirtual.useVirtualizer)({
+    count: item.values.length,
+    getScrollElement: () => parentNode,
+    estimateSize: () => 44,
+    overscan: 25
+  });
+  const refCallback = (0, _react.useCallback)(node => {
+    setParentNode(node);
+  }, []);
+  const virtualItems = valueVirtualizer.getVirtualItems();
+  (0, _react.useEffect)(() => {
+    valueVirtualizer.measure();
+  }, [valueVirtualizer, parentNode === null || parentNode === void 0 ? void 0 : parentNode.clientHeight]);
+  return /*#__PURE__*/(0, _jsxRuntime.jsx)(_jsxRuntime.Fragment, {
+    children: /*#__PURE__*/(0, _jsxRuntime.jsx)("div", {
+      ref: refCallback,
+      style: {
+        overflowY: "auto",
+        maxHeight: "80vh"
+      },
+      children: /*#__PURE__*/(0, _jsxRuntime.jsx)("div", {
+        style: {
+          height: "".concat(valueVirtualizer.getTotalSize(), "px"),
+          width: "100%",
+          position: "relative",
+          willChange: "transform"
+        },
+        children: /*#__PURE__*/(0, _jsxRuntime.jsx)("div", {
+          style: {
+            position: "absolute",
+            top: 0,
+            left: 0,
+            width: "100%",
+            transform: "translateY(".concat((_virtualItems$0$start = (_virtualItems$ = virtualItems[0]) === null || _virtualItems$ === void 0 ? void 0 : _virtualItems$.start) !== null && _virtualItems$0$start !== void 0 ? _virtualItems$0$start : 0, "px)")
+          },
+          children: virtualItems.map(virtualItem => {
+            const value = item.values[virtualItem.index];
+            return /*#__PURE__*/(0, _jsxRuntime.jsx)("div", {
+              "data-index": virtualItem.index,
+              ref: valueVirtualizer.measureElement,
+              children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.ListGroup.Item, {
+                children: /*#__PURE__*/(0, _jsxRuntime.jsxs)("div", {
+                  className: "d-flex",
+                  children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("div", {
+                    className: "flex-grow-1",
+                    children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Form.Check, {
+                      // prettier-ignore
+                      className: "obs-value-list-check",
+                      type: "switch",
+                      id: "custom-switch",
+                      label: value,
+                      checked: !_lodash.default.includes(item.omit, item.codes[value]),
+                      onChange: () => onChange(value)
+                    })
+                  }), /*#__PURE__*/(0, _jsxRuntime.jsx)("div", {
+                    children: /*#__PURE__*/(0, _jsxRuntime.jsx)("svg", {
+                      xmlns: "http://www.w3.org/2000/svg",
+                      width: "24",
+                      height: "24",
+                      fill: "currentColor",
+                      viewBox: "0 0 10 10",
+                      children: /*#__PURE__*/(0, _jsxRuntime.jsx)("rect", {
+                        x: "0",
+                        y: "0",
+                        width: "10",
+                        height: "10",
+                        fill: getFillColor(value)
+                      })
+                    })
+                  })]
+                })
+              }, value)
+            }, virtualItem.key);
+          })
+        })
+      })
+    })
+  });
+}

package/dist/components/obsm-list/ObsmList.js

@@ -4,22 +4,14 @@ Object.defineProperty(exports, "__esModule", {
   value: true
 });
 exports.ObsmKeysList = ObsmKeysList;
-require("bootstrap/dist/css/bootstrap.min.css");
 var _react = _interopRequireWildcard(require("react"));
-var _requests = require("../../utils/requests");
-var _DatasetContext = require("../../context/DatasetContext");
-var _LoadingSpinner = require("../../utils/LoadingSpinner");
 var _reactBootstrap = require("react-bootstrap");
-var _Dropdown = _interopRequireDefault(require("react-bootstrap/Dropdown"));
-var _Button = _interopRequireDefault(require("react-bootstrap/Button"));
-var _DropdownButton = _interopRequireDefault(require("react-bootstrap/DropdownButton"));
-var _ButtonGroup = _interopRequireDefault(require("react-bootstrap/ButtonGroup"));
-var _OverlayTrigger = _interopRequireDefault(require("react-bootstrap/OverlayTrigger"));
-var _Tooltip = _interopRequireDefault(require("react-bootstrap/Tooltip"));
+var _DatasetContext = require("../../context/DatasetContext");
+var _LoadingIndicators = require("../../utils/LoadingIndicators");
+var _requests = require("../../utils/requests");
 var _jsxRuntime = require("react/jsx-runtime");
-function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; }
 function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
-function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && Object.prototype.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
+function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
 function ObsmKeysList() {
   const ENDPOINT = "obsm/keys";
   const dataset = (0, _DatasetContext.useDataset)();
@@ -55,11 +47,11 @@ function ObsmKeysList() {
     }
   }, [dataset.selectedObsm]);
   const obsmList = obsmKeysList.map(item => {
-    return /*#__PURE__*/(0, _jsxRuntime.jsx)(_Dropdown.default.Item, {
+    return /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Dropdown.Item, {
       className: "custom ".concat(active === item && "active"),
       onClick: () => {
         dispatch({
-          type: "obsmSelected",
+          type: "select.obsm",
           obsm: item
         });
       },
@@ -68,25 +60,26 @@ function ObsmKeysList() {
   });
   if (!serverError) {
     return /*#__PURE__*/(0, _jsxRuntime.jsxs)(_jsxRuntime.Fragment, {
-      children: [isPending && /*#__PURE__*/(0, _jsxRuntime.jsx)(_LoadingSpinner.LoadingSpinner, {}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_DropdownButton.default, {
-        as: _ButtonGroup.default,
-        title: dataset.selectedObsm,
+      children: [isPending && /*#__PURE__*/(0, _jsxRuntime.jsx)(_LoadingIndicators.LoadingSpinner, {}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.DropdownButton, {
+        as: _reactBootstrap.ButtonGroup,
+        title: dataset.selectedObsm || "Select an embedding",
+        variant: dataset.selectedObsm ? "primary" : "outline-primary",
         id: "bg-nested-dropdown",
         size: "sm",
         children: obsmList
       })]
     });
   } else {
-    return /*#__PURE__*/(0, _jsxRuntime.jsx)(_OverlayTrigger.default, {
+    return /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.OverlayTrigger, {
       placement: "top",
       delay: {
         show: 100,
         hide: 200
       },
-      overlay: /*#__PURE__*/(0, _jsxRuntime.jsx)(_Tooltip.default, {
+      overlay: /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Tooltip, {
         children: serverError.message
       }),
-      children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_Button.default, {
+      children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Button, {
         variant: "danger",
         children: "Error"
       })

package/dist/components/scatterplot/Legend.js

@@ -5,59 +5,51 @@ Object.defineProperty(exports, "__esModule", {
 });
 exports.Legend = Legend;
 var _react = require("react");
-require("bootstrap/dist/css/bootstrap.min.css");
 var _lodash = _interopRequireDefault(require("lodash"));
+var _constants = require("../../constants/constants");
 var _DatasetContext = require("../../context/DatasetContext");
+var _colorHelper = require("../../helpers/color-helper");
 var _jsxRuntime = require("react/jsx-runtime");
-function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; }
+function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
 function Legend(_ref) {
   let {
-    scale
+    isCategorical = false,
+    min = 0,
+    max = 1
   } = _ref;
   const dataset = (0, _DatasetContext.useDataset)();
-  const [legendData, setLegendData] = (0, _react.useState)({
-    dmin: 0,
-    dmax: 1,
-    list: []
-  });
-  (0, _react.useEffect)(() => {
-    if (scale) {
-      const dom = scale.domain ? scale.domain() : [0, 1];
-      const dmin = Math.min(dom[0], dom[dom.length - 1]);
-      const dmax = Math.max(dom[dom.length - 1], dom[0]);
-      const spanList = _lodash.default.range(100).map(i => {
-        var color = scale(dmin + i / 100 * (dmax - dmin)).hex();
-        return /*#__PURE__*/(0, _jsxRuntime.jsx)("span", {
-          className: "grad-step",
-          style: {
-            backgroundColor: color
-          }
-        }, i);
-      });
-      setLegendData({
-        dmin: dmin,
-        dmax: dmax,
-        list: spanList
-      });
-    }
-  }, [scale]);
-  if (dataset.colorEncoding === "var" && scale) {
+  const {
+    getColor
+  } = (0, _colorHelper.useColor)();
+  const spanList = (0, _react.useMemo)(() => {
+    return _lodash.default.range(100).map(i => {
+      var color = (0, _colorHelper.rgbToHex)(getColor(i / 100, isCategorical));
+      return /*#__PURE__*/(0, _jsxRuntime.jsx)("span", {
+        className: "grad-step",
+        style: {
+          backgroundColor: color
+        }
+      }, i);
+    });
+  }, [getColor, isCategorical]);
+  if (dataset.colorEncoding && !isCategorical) {
+    var _dataset$selectedVar, _dataset$selectedObs;
     return /*#__PURE__*/(0, _jsxRuntime.jsx)("div", {
       className: "cherita-legend",
       children: /*#__PURE__*/(0, _jsxRuntime.jsxs)("div", {
         className: "gradient",
         children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("p", {
           className: "small m-0 p-0",
-          children: dataset.selectedVar ? dataset.selectedVar.name : ""
-        }), legendData.list, /*#__PURE__*/(0, _jsxRuntime.jsx)("span", {
+          children: dataset.colorEncoding === _constants.COLOR_ENCODINGS.VAR ? (_dataset$selectedVar = dataset.selectedVar) === null || _dataset$selectedVar === void 0 ? void 0 : _dataset$selectedVar.name : (_dataset$selectedObs = dataset.selectedObs) === null || _dataset$selectedObs === void 0 ? void 0 : _dataset$selectedObs.name
+        }), spanList, /*#__PURE__*/(0, _jsxRuntime.jsx)("span", {
           className: "domain-min",
-          children: legendData.dmin.toFixed(1)
+          children: min.toFixed(1)
         }), /*#__PURE__*/(0, _jsxRuntime.jsx)("span", {
           className: "domain-med",
-          children: ((legendData.dmin + legendData.dmax) * 0.5).toFixed(1)
+          children: ((min + max) * 0.5).toFixed(1)
         }), /*#__PURE__*/(0, _jsxRuntime.jsx)("span", {
           className: "domain-max",
-          children: legendData.dmax.toFixed(1)
+          children: max.toFixed(1)
         })]
       })
     });
@@ -68,7 +60,7 @@ function Legend(_ref) {
         className: "gradient",
         children: /*#__PURE__*/(0, _jsxRuntime.jsx)("p", {
           className: "small m-0 p-0",
-          children: dataset.selectedObs ? dataset.selectedObs.name : ""
+          children: dataset.colorEncoding === _constants.COLOR_ENCODINGS.OBS && dataset.selectedObs ? dataset.selectedObs.name : ""
         })
       })
     });