@haniffalab/cherita-react 0.2.0-dev.2024-05-22.5ce64346 → 0.2.0-dev.2024-09-26.775b9a06
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/App.scss +58 -24
- package/dist/components/Offcanvas/index.js +9 -6
- package/dist/components/dotplot/Dotplot.js +5 -189
- package/dist/components/dotplot/DotplotControls.js +197 -0
- package/dist/components/heatmap/Heatmap.js +5 -31
- package/dist/components/heatmap/HeatmapControls.js +36 -0
- package/dist/components/matrixplot/Matrixplot.js +5 -59
- package/dist/components/matrixplot/MatrixplotControls.js +65 -0
- package/dist/components/obs-list/ObsList.js +231 -113
- package/dist/components/obs-list/ObsValueList.js +101 -0
- package/dist/components/obsm-list/ObsmList.js +13 -20
- package/dist/components/scatterplot/Legend.js +28 -36
- package/dist/components/scatterplot/Scatterplot.js +302 -124
- package/dist/components/scatterplot/ScatterplotControls.js +93 -0
- package/dist/components/scatterplot/SpatialControls.js +68 -17
- package/dist/components/scatterplot/Toolbox.js +14 -18
- package/dist/components/search-bar/SearchBar.js +2 -2
- package/dist/components/search-bar/SearchResults.js +2 -2
- package/dist/components/var-list/VarList.js +51 -24
- package/dist/components/violin/Violin.js +7 -46
- package/dist/components/violin/ViolinControls.js +50 -0
- package/dist/constants/colorscales.js +28 -0
- package/dist/constants/constants.js +11 -43
- package/dist/context/DatasetContext.js +122 -23
- package/dist/helpers/color-helper.js +54 -21
- package/dist/helpers/zarr-helper.js +39 -17
- package/dist/index.js +17 -11
- package/dist/utils/LoadingIndicators.js +33 -0
- package/dist/utils/requests.js +1 -1
- package/dist/utils/search.js +4 -3
- package/package.json +10 -4
- package/dist/utils/LoadingSpinner.js +0 -44
package/dist/App.scss
CHANGED
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@@ -1,6 +1,19 @@
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@import "bootstrap/scss/bootstrap";
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// Theme CSS
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.loading-spinner {
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@extend .bg-light;
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height: 100%;
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width: 100%;
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display: flex;
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z-index: 1;
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opacity: 75%;
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position: absolute;
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justify-content: center;
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align-items: center;
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}
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.cherita-container {
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margin: 40px auto;
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background-color: #fff;
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}
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.cherita-navbar {
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@extend .mx-1;
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@extend .my-2;
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position: absolute;
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z-index: 11;
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top:
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top: 0;
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left: 0;
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right: 0;
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border-radius: 0.25rem;
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}
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.cherita-container-scatterplot {
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position: relative;
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min-height:
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min-height: 500px;
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height: 100%;
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}
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.cherita-
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.cherita-alert {
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position: absolute;
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z-index: 10;
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bottom:
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bottom: 40px;
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left: 20px;
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}
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.cherita-spatial-controls {
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position: absolute;
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z-index: 10;
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top:
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left:
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top: 1rem;
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left: 1rem;
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width: 3rem;
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}
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.cherita-spatial-footer {
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position: absolute;
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z-index: 10;
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bottom: 1rem;
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display: flex;
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justify-content: space-between;
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align-items: flex-end;
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flex-wrap: wrap;
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width: 100%;
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padding-left: 2rem;
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padding-right: 2rem;
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padding-bottom: 1rem;
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pointer-events: none;
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> * {
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pointer-events: auto;
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}
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}
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.cherita-toolbox {
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order: 1;
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}
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.cherita-legend {
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bottom: 20px;
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right: 20px;
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width: 200px;
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order: 2;
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width: 12rem;
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}
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@include media-breakpoint-down(xl) {
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.cherita-spatial-controls {
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top: 100px;
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}
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}
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.cherita-accordion-active .accordion-button {
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background-color: $accordion-button-active-bg
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}
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.obs-value-list-check {
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padding-right: 1rem;
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word-break: auto-phrase;
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overflow-wrap: anywhere;
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}
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.grad-step {
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display: inline-block;
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height: 20px;
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width: 1%;
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}
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.gradient {
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width:
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width: 100%;
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white-space: nowrap;
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position: relative;
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display: inline-block;
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@@ -10,10 +10,13 @@ exports.OffcanvasObsm = OffcanvasObsm;
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exports.OffcanvasVars = OffcanvasVars;
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var _react = require("react");
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var _Offcanvas = _interopRequireDefault(require("react-bootstrap/Offcanvas"));
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var
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var _constants = require("../../constants/constants");
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var _ObsList = require("../obs-list/ObsList");
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var _ObsmList = require("../obsm-list/ObsmList");
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var _SearchBar = require("../search-bar/SearchBar");
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var _VarList = require("../var-list/VarList");
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var _jsxRuntime = require("react/jsx-runtime");
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function _interopRequireDefault(
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function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
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function OffcanvasObs(_ref) {
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let {
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show,
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children: "Categories"
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})
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}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_Offcanvas.default.Body, {
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children: /*#__PURE__*/(0, _jsxRuntime.jsx)(
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children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_ObsList.ObsColsList, {})
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})]
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});
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}
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children: "Embedding space"
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})
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}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_Offcanvas.default.Body, {
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children: /*#__PURE__*/(0, _jsxRuntime.jsx)(
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children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_ObsmList.ObsmKeysList, {})
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})]
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}
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let {
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handleClose,
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mode =
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mode = _constants.SELECTION_MODES.MULTIPLE
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} = _ref3;
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return /*#__PURE__*/(0, _jsxRuntime.jsxs)(_Offcanvas.default, {
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}), /*#__PURE__*/(0, _jsxRuntime.jsxs)(_Offcanvas.default.Body, {
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children: [/*#__PURE__*/(0, _jsxRuntime.jsx)(_SearchBar.SearchBar, {
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searchDiseases: true
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}), /*#__PURE__*/(0, _jsxRuntime.jsx)(
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}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_VarList.VarNamesList, {
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mode: mode
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})]
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})]
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value: true
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exports.Dotplot = Dotplot;
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exports.DotplotControls = DotplotControls;
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require("bootstrap/dist/css/bootstrap.min.css");
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var _Dropdown = _interopRequireDefault(require("react-bootstrap/Dropdown"));
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var _reactBootstrap = require("react-bootstrap");
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var _reactPlotly = _interopRequireDefault(require("react-plotly.js"));
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var _DatasetContext = require("../../context/DatasetContext");
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var
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var _LoadingIndicators = require("../../utils/LoadingIndicators");
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var _requests = require("../../utils/requests");
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var _reactBootstrap = require("react-bootstrap");
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var _LoadingSpinner = require("../../utils/LoadingSpinner");
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var _jsxRuntime = require("react/jsx-runtime");
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function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
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function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
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function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u &&
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function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; }
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function DotplotControls() {
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const dataset = (0, _DatasetContext.useDataset)();
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const dispatch = (0, _DatasetContext.useDatasetDispatch)();
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const [controls, setControls] = (0, _react.useState)({
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standardScale: dataset.controls.standardScale,
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expressionCutoff: dataset.controls.expressionCutoff,
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colorAxis: {
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cmin: dataset.controls.colorAxis.cmin,
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cmax: dataset.controls.colorAxis.cmax
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}
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});
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setControls(c => ({
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...c,
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colorAxis: {
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cmin: dataset.controls.colorAxis.cmin,
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cmax: dataset.controls.colorAxis.cmax
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}
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}));
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}, [dataset.controls.colorAxis.cmin, dataset.controls.colorAxis.cmax]);
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const colorScaleList = _constants.PLOTLY_COLORSCALES.map(item => /*#__PURE__*/(0, _jsxRuntime.jsx)(_Dropdown.default.Item, {
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active: dataset.controls.colorScale === item,
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dispatch({
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type: "set.controls.colorScale",
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colorScale: item
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});
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},
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}, item));
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const standardScaleList = _constants.DOTPLOT_STANDARDSCALES.map(item => /*#__PURE__*/(0, _jsxRuntime.jsx)(_Dropdown.default.Item, {
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active: dataset.controls.standardScale === item.value,
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dispatch({
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type: "set.controls.standardScale",
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standardScale: item.value
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});
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children: item.name
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return /*#__PURE__*/(0, _jsxRuntime.jsxs)(_reactBootstrap.ButtonToolbar, {
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children: [/*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.ButtonGroup, {
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children: /*#__PURE__*/(0, _jsxRuntime.jsxs)(_Dropdown.default, {
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children: [/*#__PURE__*/(0, _jsxRuntime.jsx)(_Dropdown.default.Toggle, {
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id: "dropdownColorscale",
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variant: "light",
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children: dataset.controls.colorScale
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}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_Dropdown.default.Menu, {
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children: colorScaleList
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})]
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})
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}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.ButtonGroup, {
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children: [/*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.InputGroup.Text, {
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}), /*#__PURE__*/(0, _jsxRuntime.jsxs)(_Dropdown.default, {
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}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_Dropdown.default.Menu, {
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}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.ButtonGroup, {
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children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.ToggleButton, {
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});
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},
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children: "Average only above cutoff"
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})
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}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Form, {
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dispatch({
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type: "set.controls.expressionCutoff",
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expressionCutoff: parseFloat(controls.expressionCutoff)
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});
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