@graphty/graph-io 0.3.43 → 0.3.44

package/dist/src/formats/pajek/syntax.js.map

@@ -1 +1 @@
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package/dist/src/formats/xgmml/columns.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"columns.d.ts","sourceRoot":"","sources":["../../../../src/formats/xgmml/columns.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,EAA+B,KAAK,SAAS,EAAoB,MAAM,uBAAuB,CAAC;AAGtG,OAAO,EAAE,KAAK,mBAAmB,EAAE,KAAK,aAAa,EAAE,MAAM,wBAAwB,CAAC;AAGtF,OAAO,EAAE,KAAK,MAAM,EAAc,MAAM,eAAe,CAAC;AAGxD,+BAA+B;AAC/B,KAAK,MAAM,GAAG,MAAM,GAAG,MAAM,GAAG,OAAO,CAAC;AAuCxC,+BAA+B;AAC/B,UAAU,gBAAgB;IACtB,+DAA+D;IAC/D,QAAQ,CAAC,QAAQ,EAAE,OAAO,CAAC;IAC3B,oCAAoC;IACpC,QAAQ,CAAC,IAAI,EAAE,KAAK,GAAG,QAAQ,CAAC;IAChC,iGAAiG;IACjG,QAAQ,CAAC,QAAQ,EAAE,WAAW,CAAC,MAAM,CAAC,CAAC;CAC1C;AAWD;;;GAGG;AACH,qBAAa,SAAS;IAClB,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAS;IAEhC,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAsB;IAE7C,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAmB;IAE3C,OAAO,CAAC,QAAQ,CAAC,KAAK,CAA2B;IAEjD;;;;;OAKG;gBACS,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,mBAAmB,EAAE,OAAO,EAAE,gBAAgB;IAMlF;;;;OAIG;IACH,GAAG,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO;IAI1B;;;;;;;OAOG;IACH,MAAM,CAAC,GAAG,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,KAAK,EAAE,aAAa,GAAG,IAAI;IAoD5D;;;;;;OAMG;IACH,OAAO,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,aAAa,GAAG,IAAI;IAO5E;;;;;;OAMG;IACH,OAAO,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,OAAO,EAAE,KAAK,EAAE,aAAa,GAAG,IAAI;IAI9E;;;;OAIG;IACH,KAAK,CAAC,IAAI,EAAE,SAAS,EAAE,QAAQ,EAAE,CAAC,GAAG,EAAE,MAAM,KAAK,MAAM,GAAG,IAAI;IAuB/D;;;;;OAKG;IACH,OAAO,CAAC,IAAI;IAsBZ;;;;;;OAMG;IACH,OAAO,CAAC,GAAG;IAeX;;;;;;;OAOG;IACH,OAAO,CAAC,SAAS;IA4BjB;;;;;;;;OAQG;IACH,OAAO,CAAC,QAAQ;IA8DhB;;;;;;OAMG;IACH,OAAO,CAAC,SAAS;IAkEjB;;;;;OAKG;IACH,OAAO,CAAC,MAAM;IA0Dd;;;;;OAKG;IACH,OAAO,CAAC,YAAY;IA8BpB;;;;;OAKG;IACH,OAAO,CAAC,MAAM;IAUd;;;;;OAKG;IACH,OAAO,CAAC,QAAQ;IAShB;;;;OAIG;IACH,OAAO,CAAC,UAAU;CAGrB"}
+{"version":3,"file":"columns.d.ts","sourceRoot":"","sources":["../../../../src/formats/xgmml/columns.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,EAA+B,KAAK,SAAS,EAAoB,MAAM,uBAAuB,CAAC;AAGtG,OAAO,EAAE,KAAK,mBAAmB,EAAE,KAAK,aAAa,EAAE,MAAM,wBAAwB,CAAC;AAGtF,OAAO,EAAE,KAAK,MAAM,EAAW,MAAM,eAAe,CAAC;AAGrD,+BAA+B;AAC/B,KAAK,MAAM,GAAG,MAAM,GAAG,MAAM,GAAG,OAAO,CAAC;AAuCxC,+BAA+B;AAC/B,UAAU,gBAAgB;IACtB,+DAA+D;IAC/D,QAAQ,CAAC,QAAQ,EAAE,OAAO,CAAC;IAC3B,oCAAoC;IACpC,QAAQ,CAAC,IAAI,EAAE,KAAK,GAAG,QAAQ,CAAC;IAChC,iGAAiG;IACjG,QAAQ,CAAC,QAAQ,EAAE,WAAW,CAAC,MAAM,CAAC,CAAC;CAC1C;AAWD;;;GAGG;AACH,qBAAa,SAAS;IAClB,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAS;IAEhC,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAsB;IAE7C,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAmB;IAE3C,OAAO,CAAC,QAAQ,CAAC,KAAK,CAA2B;IAEjD;;;;;OAKG;gBACS,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,mBAAmB,EAAE,OAAO,EAAE,gBAAgB;IAMlF;;;;OAIG;IACH,GAAG,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO;IAI1B;;;;;;;OAOG;IACH,MAAM,CAAC,GAAG,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,KAAK,EAAE,aAAa,GAAG,IAAI;IA4D5D;;;;;;OAMG;IACH,OAAO,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,aAAa,GAAG,IAAI;IAO5E;;;;;;OAMG;IACH,OAAO,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,OAAO,EAAE,KAAK,EAAE,aAAa,GAAG,IAAI;IAI9E;;;;OAIG;IACH,KAAK,CAAC,IAAI,EAAE,SAAS,EAAE,QAAQ,EAAE,CAAC,GAAG,EAAE,MAAM,KAAK,MAAM,GAAG,IAAI;IAuB/D;;;;;OAKG;IACH,OAAO,CAAC,IAAI;IAsBZ;;;;;;OAMG;IACH,OAAO,CAAC,GAAG;IAeX;;;;;;;OAOG;IACH,OAAO,CAAC,SAAS;IA4BjB;;;;;;;;OAQG;IACH,OAAO,CAAC,QAAQ;IA8DhB;;;;;;OAMG;IACH,OAAO,CAAC,SAAS;IAkEjB;;;;;OAKG;IACH,OAAO,CAAC,MAAM;IA0Dd;;;;;OAKG;IACH,OAAO,CAAC,YAAY;IA8BpB;;;;;OAKG;IACH,OAAO,CAAC,MAAM;IAUd;;;;;OAKG;IACH,OAAO,CAAC,QAAQ;IAShB;;;;OAIG;IACH,OAAO,CAAC,UAAU;CAGrB"}

package/dist/src/formats/xgmml/columns.js

@@ -8,7 +8,7 @@
 import { declareResolved, DictHeuristic, uniqueColumnName } from "../../common/attributes.js";
 import { inferTextDtype, parseTextCell } from "../../common/text.js";
 import { CYTOSCAPE_ORIGIN_NAMESPACE, FORMAT, XGMML_ISSUE } from "./constants.js";
-import { isListLike } from "./document.js";
+import { attTree } from "./document.js";
 import { attType, elementKind, parseScalar, widenScalar } from "./values.js";
 /** The dtype of each scalar kind. */
 const DTYPES = {
@@ -77,6 +77,11 @@ export class ColumnSet {
                 plan.declared.add("string");
             }
         }
+        else if ((type.kind === "list" || type.kind === "map") && deeperThan(att, MAX_JSON_ATT_DEPTH)) {
+            // a json value that deep cannot be written as JSON text (or read back) without overflowing the stack
+            this.badAtt(`"${name}" is nested more than ${String(MAX_JSON_ATT_DEPTH)} atts deep; it is skipped`, att, "depth");
+            cell = null;
+        }
         else if (type.kind === "list") {
             cell = this.listCell(att, name, plan, at);
             plan.declared.add("list");
@@ -543,19 +548,39 @@ function recordOf(att) {
     }
     return out;
 }
+/** The deepest list or map att kept, as a json value. */
+const MAX_JSON_ATT_DEPTH = 64;
+/**
+ * Whether an att tree is deeper than a limit, walked with an explicit stack.
+ * @param root - the att
+ * @param limit - the most levels allowed
+ * @returns true when deeper
+ */
+function deeperThan(root, limit) {
+    const stack = [[root, 1]];
+    for (let top = stack.pop(); top !== undefined; top = stack.pop()) {
+        const [att, depth] = top;
+        if (depth > limit) {
+            return true;
+        }
+        for (const child of att.children) {
+            stack.push([child, depth + 1]);
+        }
+    }
+    return false;
+}
 /**
- * An att as a json value: its value text, its children as an array or a record, or its XML.
+ * An att as a json value: its XML, its value text, or its children as an array or a record.
  * @param att - the att
  * @returns the value
  */
 function jsonOfAtt(att) {
-    if (att.xml !== null) {
-        return att.xml;
-    }
-    if (att.children.length === 0) {
-        return att.value;
-    }
-    return isListLike(att) ? att.children.map(jsonOfAtt) : recordOf(att);
+    return attTree(att, (a) => {
+        if (a.xml !== null) {
+            return { value: a.xml };
+        }
+        return a.children.length === 0 ? { value: a.value } : null;
+    });
 }
 /**
  * A cell as the value its column's dtype stores.

package/dist/src/formats/xgmml/columns.js.map

@@ -1 +1 @@
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package/dist/src/formats/xgmml/constants.d.ts

@@ -116,6 +116,8 @@ export declare const CYTOSCAPE_ORIGIN_NAMESPACE = "cytoscape";
 export declare const XGMML_ISSUE: Readonly<{
     /** The input is not well-formed XML. The import stops. */
     XML_SYNTAX: "E_XML_SYNTAX";
+    /** Elements are nested more than 100,000 deep. The import stops. */
+    XML_NESTING: "E_XML_NESTING";
     /** The input is empty or whitespace only. The import stops. */
     EMPTY_INPUT: "E_EMPTY_INPUT";
     /** The input is not valid UTF-8. The import stops. */

package/dist/src/formats/xgmml/constants.d.ts.map

@@ -1 +1 @@
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package/dist/src/formats/xgmml/constants.js

@@ -2,7 +2,7 @@
  * What the XGMML importer and exporter share: the namespaces, the format facts, the fixed column
  * names, the `meta.extra` key, and the issue and loss code tables.
  */
-import { AMBIGUOUS_GRAPH_NAME_CODE, BAD_VALUE_CODE, COLUMN_RENAMED_CODE, COLUMN_RENAMED_LOSS_CODE, DANGLING_REFERENCE_CODE, DIRECTION_FORCED_CODE, DIRECTION_REFUSED_CODE, DUPLICATE_ATTRIBUTE_CODE, DUPLICATE_EDGE_ID_CODE, DUPLICATE_NODE_CODE, ELEMENT_ISSUE, EMPTY_INPUT_CODE, ENCODING_CONFLICT_CODE, ENCODING_FALLBACK_CODE, EQUATION_AS_TEXT_CODE, GRAPH_NOT_FOUND_CODE, ID_MERGED_CODE, ID_TEXT_TYPE_CODE, INPUT_ISSUE, INVALID_ENCODING_CODE, INVALID_UTF8_CODE, MISSING_ENDPOINT_CODE, MISSING_ID_CODE, MIXED_DIRECTION_CODE, MULTIPLE_GRAPHS_CODE, MUTUAL_EXPANDED_CODE, NO_GRAPH_CODE, OPTION_IGNORED_CODE, PARENT_CYCLE_CODE, PARENTS_DROPPED_CODE, PRECISION_CODE, ROLE_ASSUMED_CODE, ROLE_DROPPED_CODE, ROLE_TAKEN_CODE, SINK_OPTION_CODE, STORAGE_CLASS_CODE, STRAY_TEXT_CODE, TEMPORAL_DROPPED_CODE, TEMPORAL_TEXT_DROPPED_CODE, UNKNOWN_ATTR_TYPE_CODE, UNKNOWN_ELEMENT_CODE, UNKNOWN_ENCODING_CODE, UNKNOWN_PARENT_CODE, WEIGHT_KEY_CLASH_CODE, WIDENED_CODE, XML_ILLEGAL_CHAR_CODE, XML_SYNTAX_CODE, } from "../../common/codes.js";
+import { AMBIGUOUS_GRAPH_NAME_CODE, BAD_VALUE_CODE, COLUMN_RENAMED_CODE, COLUMN_RENAMED_LOSS_CODE, DANGLING_REFERENCE_CODE, DIRECTION_FORCED_CODE, DIRECTION_REFUSED_CODE, DUPLICATE_ATTRIBUTE_CODE, DUPLICATE_EDGE_ID_CODE, DUPLICATE_NODE_CODE, ELEMENT_ISSUE, EMPTY_INPUT_CODE, ENCODING_CONFLICT_CODE, ENCODING_FALLBACK_CODE, EQUATION_AS_TEXT_CODE, GRAPH_NOT_FOUND_CODE, ID_MERGED_CODE, ID_TEXT_TYPE_CODE, INPUT_ISSUE, INVALID_ENCODING_CODE, INVALID_UTF8_CODE, MISSING_ENDPOINT_CODE, MISSING_ID_CODE, MIXED_DIRECTION_CODE, MULTIPLE_GRAPHS_CODE, MUTUAL_EXPANDED_CODE, NO_GRAPH_CODE, OPTION_IGNORED_CODE, PARENT_CYCLE_CODE, PARENTS_DROPPED_CODE, PRECISION_CODE, ROLE_ASSUMED_CODE, ROLE_DROPPED_CODE, ROLE_TAKEN_CODE, SINK_OPTION_CODE, STORAGE_CLASS_CODE, STRAY_TEXT_CODE, TEMPORAL_DROPPED_CODE, TEMPORAL_TEXT_DROPPED_CODE, UNKNOWN_ATTR_TYPE_CODE, UNKNOWN_ELEMENT_CODE, UNKNOWN_ENCODING_CODE, UNKNOWN_PARENT_CODE, WEIGHT_KEY_CLASH_CODE, WIDENED_CODE, XML_ILLEGAL_CHAR_CODE, XML_NESTING_CODE, XML_SYNTAX_CODE, } from "../../common/codes.js";
 /**
  * The format name.
  * @category Plugin helpers
@@ -119,6 +119,8 @@ export const XGMML_ISSUE = Object.freeze({
     ...ELEMENT_ISSUE,
     /** The input is not well-formed XML. The import stops. */
     XML_SYNTAX: XML_SYNTAX_CODE,
+    /** Elements are nested more than 100,000 deep. The import stops. */
+    XML_NESTING: XML_NESTING_CODE,
     /** The input is empty or whitespace only. The import stops. */
     EMPTY_INPUT: EMPTY_INPUT_CODE,
     /** The input is not valid UTF-8. The import stops. */

package/dist/src/formats/xgmml/constants.js.map

@@ -1 +1 @@
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package/dist/src/formats/xgmml/document.d.ts

@@ -395,14 +395,6 @@ export declare class XgmmlParser implements XmlHandler {
      */
     private duplicateGraphics;
 }
-/**
- * Whether an att's children are list items rather than named fields: they have no names, repeat
- * the parent's name (Cytoscape 3 lists), or are several that share one name (2.x bend handles).
- * @param att - the att
- * @returns true for a list
- * @category Plugin helpers
- */
-export declare function isListLike(att: AttRec): boolean;
 /**
  * A graphics att as plain data, values as written: an att with children is an array when they
  * are list items (isListLike), else a record by name; a childless att is its value,
@@ -412,4 +404,16 @@ export declare function isListLike(att: AttRec): boolean;
  * @category Plugin helpers
  */
 export declare function attJson(att: AttRec): unknown;
+/**
+ * An att tree as plain data, walked with an explicit stack so an att nested any depth deep cannot overflow the
+ * call stack: an att `leafOf` gives a value for is that value; any other is an array of its children when they are
+ * list items (isListLike), else a record of them by name.
+ * @param root - the att
+ * @param leafOf - the value of an att that is a leaf, or null for one whose children make its value
+ * @returns the value
+ * @category Plugin helpers
+ */
+export declare function attTree(root: AttRec, leafOf: (att: AttRec) => {
+    readonly value: unknown;
+} | null): unknown;
 //# sourceMappingURL=document.d.ts.map

package/dist/src/formats/xgmml/document.d.ts.map

@@ -1 +1 @@
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package/dist/src/formats/xgmml/document.js

@@ -727,7 +727,20 @@ export class XgmmlParser {
         if (target.graphics !== null && att.name in target.graphics) {
             this.duplicateGraphics(att.name, att.line);
         }
-        target.graphics = { ...target.graphics, [att.name]: attJson(att) };
+        // in place: beginGraphics() gave the target its own record, and a copy per att cost the square of a node's
+        // att count. An att named __proto__ is defined, not assigned, so it stays an own property
+        const graphics = (target.graphics ?? (target.graphics = {}));
+        if (att.name === "__proto__") {
+            Object.defineProperty(graphics, att.name, {
+                value: attJson(att),
+                writable: true,
+                enumerable: true,
+                configurable: true,
+            });
+        }
+        else {
+            graphics[att.name] = attJson(att);
+        }
     }
     /**
      * W_DUPLICATE_ATTRIBUTE for a graphics property given twice on one element (once per name).
@@ -745,7 +758,7 @@ export class XgmmlParser {
  * @returns true for a list
  * @category Plugin helpers
  */
-export function isListLike(att) {
+function isListLike(att) {
     const names = new Set(att.children.map((c) => c.name));
     if (names.size !== 1) {
         return false;
@@ -762,18 +775,48 @@ export function isListLike(att) {
  * @category Plugin helpers
  */
 export function attJson(att) {
-    if (att.children.length === 0) {
-        if (att.value !== null) {
-            return att.value;
+    return attTree(att, (a) => {
+        if (a.children.length > 0) {
+            return null;
+        }
+        if (a.value !== null) {
+            return { value: a.value };
+        }
+        return { value: Object.keys(a.extra).length > 0 ? { ...a.extra } : null };
+    });
+}
+/**
+ * An att tree as plain data, walked with an explicit stack so an att nested any depth deep cannot overflow the
+ * call stack: an att `leafOf` gives a value for is that value; any other is an array of its children when they are
+ * list items (isListLike), else a record of them by name.
+ * @param root - the att
+ * @param leafOf - the value of an att that is a leaf, or null for one whose children make its value
+ * @returns the value
+ * @category Plugin helpers
+ */
+export function attTree(root, leafOf) {
+    const rootLeaf = leafOf(root);
+    if (rootLeaf !== null) {
+        return rootLeaf.value;
+    }
+    const container = (att) => (isListLike(att) ? [] : {});
+    const out = container(root);
+    const stack = [[root, out]];
+    for (let top = stack.pop(); top !== undefined; top = stack.pop()) {
+        const [att, into] = top;
+        for (const child of att.children) {
+            const leaf = leafOf(child);
+            const value = leaf === null ? container(child) : leaf.value;
+            if (Array.isArray(into)) {
+                into.push(value);
+            }
+            else {
+                into[child.name ?? ""] = value;
+            }
+            if (leaf === null) {
+                stack.push([child, value]);
+            }
         }
-        return Object.keys(att.extra).length > 0 ? { ...att.extra } : null;
-    }
-    if (isListLike(att)) {
-        return att.children.map(attJson);
-    }
-    const out = {};
-    for (const child of att.children) {
-        out[child.name ?? ""] = attJson(child);
     }
     return out;
 }

package/dist/src/formats/xgmml/document.js.map

@@ -1 +1 @@
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package/dist/src/formats/xgmml/emit.d.ts.map

@@ -1 +1 @@
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