@graphty/graph-io 0.3.42 → 0.3.44

package/dist/src/formats/pajek/exporter.js

@@ -22,6 +22,7 @@ import { agree, plural } from "../../common/plural.js";
 import { inferTextDtype } from "../../common/text.js";
 import { explicitWeights } from "../../common/weights.js";
 import { encodeChunks, joinText } from "../../common/writer.js";
+import { PAJEK_STYLE_CAPABILITIES, pajekStyledExport } from "./styles.js";
 import { encodeCharacterReferences, formatIntervals, isParameterKey, LABEL_COLUMN, ORIGINAL_ID_KEY, POSITION_COLUMN, RELATION_COLUMN, SHAPE_COLUMN, SHAPES, } from "./syntax.js";
 /**
  * The LossNote codes of the Pajek exporter's check(): the Pajek-specific ones and, aliased, the
@@ -69,6 +70,8 @@ export const PAJEK_LOSS = Object.freeze({
      * reads back with that role.
      */
     ROLE_ASSUMED: LOSS.ROLE_ASSUMED,
+    /** The label column, when a role-less column named `label` is read over it on import. */
+    COLUMN_DROPPED: LOSS.COLUMN_DROPPED,
     /**
      * With `sanitizeIds: "mangle"`: an original id that reads back as a different type, such as the text "7" as the
      * number 7.
@@ -295,20 +298,31 @@ function labelNotes(snapshot, nodePlan, notes) {
     const plain = [...snapshot.nodes].find((c) => c.meta.role === null && c.meta.name === LABEL_COLUMN);
     if (plain !== undefined) {
         notes.push(note(PAJEK_LOSS.ROLE_ASSUMED, `node column "${LABEL_COLUMN}" has no role; written as a parameter, it reads back as the vertex label (role label)`, LABEL_COLUMN, plain.length - plain.nullCount));
-    }
-    if (carried === 0) {
-        return;
-    }
-    let gained = 0;
-    for (let i = 0; i < snapshot.nodeCount; i++) {
-        if (!labels?.isSet(i)) {
-            gained++;
+        // the labels written second on each vertex line are then read over by that parameter
+        if (labels !== null && labels !== plain) {
+            notes.push(note(PAJEK_LOSS.COLUMN_DROPPED, `node column "${labels.meta.name}" (the labels) reads back replaced by the parameter "${LABEL_COLUMN}"`, labels.meta.name, labels.length - labels.nullCount));
         }
     }
+    const gained = carried === 0 ? 0 : unlabeled(snapshot.nodeCount, labels);
     if (gained > 0) {
         notes.push(note(PAJEK_LOSS.LABEL_GAINED, `${gained} vertex line${plural(gained)} ${agree(gained, "carries", "carry")} coordinates, a shape or parameters and need a label; the id text is written there and reads back as a label`, labels === null ? LABEL_COLUMN : labels.meta.name, gained));
     }
 }
+/**
+ * How many nodes have no label value.
+ * @param nodeCount - the node count
+ * @param labels - the label column, or null
+ * @returns the count
+ */
+function unlabeled(nodeCount, labels) {
+    let count = 0;
+    for (let i = 0; i < nodeCount; i++) {
+        if (!labels?.isSet(i)) {
+            count++;
+        }
+    }
+    return count;
+}
 /**
  * Whether every set value of a shape column is a Pajek shape keyword.
  * @param column - the shape column (string or dict)
@@ -556,10 +570,11 @@ function needsZ(column) {
  * @param options.networkHeader - whether the `*Network` line is written
  * @param options.name - the name on that line, or null for a bare line
  * @param options.mangle - whether the original ids are written as `graphty_originalId` parameters
+ * @param comment - a comment line written first (the `graphty.styles` block), or null
  * @yields lines with their terminator
  * @returns nothing
  */
-function* writeParts(snapshot, options) {
+function* writeParts(snapshot, options, comment = null) {
     const ids = sanitizeIds(snapshot, CAPABILITIES.idCharset, options.mangle ? "mangle" : "error");
     const nodePlan = withoutReservedKey(plan(snapshot.nodes, "node", null), options.mangle);
     const edgePlan = plan(snapshot.edges, "edge", null);
@@ -577,6 +592,9 @@ function* writeParts(snapshot, options) {
             });
         }
     }
+    if (comment !== null) {
+        yield `${comment}\n`;
+    }
     if (options.networkHeader) {
         yield options.name === null ? "*Network\n" : `*Network ${options.name}\n`;
     }
@@ -842,76 +860,20 @@ export const pajekExporter = Object.freeze({
     format: "pajek",
     options: Object.freeze(["name", "networkHeader"]),
     capabilities: CAPABILITIES,
+    styles: Object.freeze({ capabilities: PAJEK_STYLE_CAPABILITIES }),
     /**
-     * Pre-flight: the generic capability gaps plus the Pajek-specific ones.
+     * Pre-flight: the generic capability gaps plus the Pajek-specific ones; with styles, also the values written as
+     * the nearest ones Pajek has.
      * @param snapshot - the snapshot
      * @param options - export options
      * @returns the loss notes, empty when the export is exact
      */
     check(snapshot, options) {
-        const resolved = resolveExportOptions(options);
-        const { mangle } = resolvePajekOptions(snapshot, options);
-        const notes = [];
-        const planned = plan(snapshot.nodes, "node", notes);
-        const nodePlan = withoutReservedKey(planned, mangle);
-        const edgePlan = plan(snapshot.edges, "edge", notes);
-        const ids = sanitizeIds(snapshot, CAPABILITIES.idCharset, mangle ? "mangle" : "error");
-        checkIdTexts(snapshot.nodeCount, ids, mangle, notes);
-        if (nodePlan.length !== planned.length) {
-            const reserved = planned.find((p) => p.slot === "param" && p.column.meta.name === ORIGINAL_ID_KEY);
-            if (reserved !== undefined) {
-                notes.push(note(PAJEK_LOSS.KEY_DROPPED, `node column "${ORIGINAL_ID_KEY}" is the parameter the exporter writes the original ids under (sanitizeIds "mangle"); it is not written`, ORIGINAL_ID_KEY, reserved.column.length - reserved.column.nullCount));
-            }
-        }
-        // columns this exporter handles itself although the generic table says otherwise: the spells
-        // list (written as an interval token, or reported above with the spells code), the shape
-        // keyword and the relation name (dict columns written as keywords)
-        const owned = new Set();
-        for (const { column, slot } of [...nodePlan, ...edgePlan]) {
-            // a shape written as a parameter is owned too: its note already says the column reads back as string
-            if (slot === "shape" ||
-                slot === "relation" ||
-                (slot === "param" && column.meta.domain === "node" && column.meta.name === SHAPE_COLUMN)) {
-                owned.add(`${column.meta.domain}:${column.meta.name}`);
-            }
-        }
-        for (const table of [snapshot.nodes, snapshot.edges]) {
-            for (const column of table) {
-                if (column.meta.role === "spells") {
-                    owned.add(`${column.meta.domain}:${column.meta.name}`);
-                }
-            }
-        }
-        for (const n of checkCapabilities(snapshot, CAPABILITIES, resolved, {
-            roles: SLOT_ROLES,
-            roleNames: ROLE_NAMES,
-            // the label slot is a vertex slot; an edge label is a parameter under its own name
-            edgeRoleNames: {},
-        })) {
-            if (n.column !== null && (n.code === LOSS.LIST || n.code === LOSS.DTYPE)) {
-                const domain = n.message.startsWith("node column") ? "node" : "edge";
-                if (owned.has(`${domain}:${n.column}`)) {
-                    continue;
-                }
-            }
-            notes.push(n);
-        }
-        labelNotes(snapshot, nodePlan, notes);
-        for (const column of snapshot.edges) {
-            if (column.meta.role === "label") {
-                notes.push(note(LOSS.ROLE, `edge column "${column.meta.name}" (label) is written as a plain parameter; Pajek labels vertices only and the role is lost`, column.meta.name, column.length - column.nullCount));
-            }
+        const styled = pajekStyledExport(snapshot, options?.styles);
+        if (styled === null) {
+            return checkPlain(snapshot, options);
         }
-        checkCells(nodePlan, "node", notes);
-        checkCells(edgePlan, "edge", notes);
-        const folding = pairFolding(snapshot, { foldMutual: true });
-        if (folding.mutualCount > 0) {
-            notes.push(note(PAJEK_LOSS.MUTUAL_AS_UNDIRECTED, `${folding.mutualCount} mutual pair${plural(folding.mutualCount)} ${agree(folding.mutualCount, "is", "are")} written as undirected edges; the mutual mark is lost`, snapshot.edges.byRole("mutual")?.meta.name ?? null, folding.mutualCount));
-        }
-        if (Number.isNaN(firstModeOf(snapshot))) {
-            notes.push(note(PAJEK_LOSS.FIRST_MODE_DROPPED, "meta.extra.pajek.firstMode is not a count within 0..nodeCount; the two-mode header is not written"));
-        }
-        return notes;
+        return Object.freeze([...checkPlain(styled.snapshot, withOriginalIds(options)), ...styled.notes]);
     },
     /**
      * Write the snapshot as UTF-8 chunks.
@@ -920,8 +882,7 @@ export const pajekExporter = Object.freeze({
      * @returns the chunks
      */
     export(snapshot, options) {
-        const resolved = resolvePajekOptions(snapshot, options);
-        return encodeChunks(writeParts(snapshot, resolved));
+        return encodeChunks(styledParts(snapshot, options));
     },
     /**
      * Write the snapshot as one string.
@@ -930,8 +891,113 @@ export const pajekExporter = Object.freeze({
      * @returns the document
      */
     exportToString(snapshot, options) {
-        const resolved = resolvePajekOptions(snapshot, options);
-        return joinText(writeParts(snapshot, resolved));
+        return joinText(styledParts(snapshot, options));
     },
 });
+/**
+ * The text parts of a Pajek document, with its styles when they are given.
+ * @param snapshot - the snapshot
+ * @param options - export options
+ * @returns the parts
+ */
+function styledParts(snapshot, options) {
+    const styled = pajekStyledExport(snapshot, options?.styles);
+    if (styled === null) {
+        return writeParts(snapshot, resolvePajekOptions(snapshot, options));
+    }
+    return writeParts(styled.snapshot, resolvePajekOptions(styled.snapshot, withOriginalIds(options)), styled.comment);
+}
+/**
+ * The options of an export with styles: unless `sanitizeIds` is given, the original ids of renumbered vertices are
+ * written too (`"mangle"`), so the file reads back as the same graph and its `graphty.styles` block applies.
+ * @param options - export options
+ * @returns the options to write with
+ */
+function withOriginalIds(options) {
+    return options?.sanitizeIds === undefined ? { ...options, sanitizeIds: "mangle" } : options;
+}
+/**
+ * The columns this exporter handles itself although the generic table says otherwise: the spells list (written as an
+ * interval token, or reported with the spells code), the shape keyword and the relation name (dict columns written as
+ * keywords), and a shape written as a parameter (its own note says the column reads back as string).
+ * @param snapshot - the snapshot
+ * @param planned - the node and edge column plans
+ * @returns the columns, as `<domain>:<name>`
+ */
+function ownedColumns(snapshot, planned) {
+    const owned = new Set();
+    const key = (column) => `${column.meta.domain}:${column.meta.name}`;
+    for (const { column, slot } of planned) {
+        const shapeParam = slot === "param" && column.meta.domain === "node" && column.meta.name === SHAPE_COLUMN;
+        if (slot === "shape" || slot === "relation" || shapeParam) {
+            owned.add(key(column));
+        }
+    }
+    for (const column of [...snapshot.nodes, ...snapshot.edges]) {
+        if (column.meta.role === "spells") {
+            owned.add(key(column));
+        }
+    }
+    return owned;
+}
+/**
+ * The generic capability gaps, without the list and dtype notes of a column Pajek writes in a slot of its own.
+ * @param snapshot - the snapshot
+ * @param resolved - the resolved export options
+ * @param owned - the columns written in a slot of their own, as `<domain>:<name>`
+ * @returns the loss notes
+ */
+function capabilityNotes(snapshot, resolved, owned) {
+    const notes = checkCapabilities(snapshot, CAPABILITIES, resolved, {
+        roles: SLOT_ROLES,
+        roleNames: ROLE_NAMES,
+        // the label slot is a vertex slot; an edge label is a parameter under its own name
+        edgeRoleNames: {},
+    });
+    return notes.filter((n) => {
+        if (n.column === null || (n.code !== LOSS.LIST && n.code !== LOSS.DTYPE)) {
+            return true;
+        }
+        const domain = n.message.startsWith("node column") ? "node" : "edge";
+        return !owned.has(`${domain}:${n.column}`);
+    });
+}
+/**
+ * Every loss the Pajek text of a snapshot would incur: the generic capability gaps plus the Pajek-specific ones.
+ * @param snapshot - the snapshot
+ * @param options - export options
+ * @returns the loss notes
+ */
+function checkPlain(snapshot, options) {
+    const resolved = resolveExportOptions(options);
+    const { mangle } = resolvePajekOptions(snapshot, options);
+    const notes = [];
+    const planned = plan(snapshot.nodes, "node", notes);
+    const nodePlan = withoutReservedKey(planned, mangle);
+    const edgePlan = plan(snapshot.edges, "edge", notes);
+    const ids = sanitizeIds(snapshot, CAPABILITIES.idCharset, mangle ? "mangle" : "error");
+    checkIdTexts(snapshot.nodeCount, ids, mangle, notes);
+    const reserved = nodePlan.length === planned.length
+        ? undefined
+        : planned.find((p) => p.slot === "param" && p.column.meta.name === ORIGINAL_ID_KEY);
+    if (reserved !== undefined) {
+        notes.push(note(PAJEK_LOSS.KEY_DROPPED, `node column "${ORIGINAL_ID_KEY}" is the parameter the exporter writes the original ids under (sanitizeIds "mangle"); it is not written`, ORIGINAL_ID_KEY, reserved.column.length - reserved.column.nullCount));
+    }
+    const owned = ownedColumns(snapshot, [...nodePlan, ...edgePlan]);
+    notes.push(...capabilityNotes(snapshot, resolved, owned));
+    labelNotes(snapshot, nodePlan, notes);
+    for (const column of [...snapshot.edges].filter((c) => c.meta.role === "label")) {
+        notes.push(note(LOSS.ROLE, `edge column "${column.meta.name}" (label) is written as a plain parameter; Pajek labels vertices only and the role is lost`, column.meta.name, column.length - column.nullCount));
+    }
+    checkCells(nodePlan, "node", notes);
+    checkCells(edgePlan, "edge", notes);
+    const folding = pairFolding(snapshot, { foldMutual: true });
+    if (folding.mutualCount > 0) {
+        notes.push(note(PAJEK_LOSS.MUTUAL_AS_UNDIRECTED, `${folding.mutualCount} mutual pair${plural(folding.mutualCount)} ${agree(folding.mutualCount, "is", "are")} written as undirected edges; the mutual mark is lost`, snapshot.edges.byRole("mutual")?.meta.name ?? null, folding.mutualCount));
+    }
+    if (Number.isNaN(firstModeOf(snapshot))) {
+        notes.push(note(PAJEK_LOSS.FIRST_MODE_DROPPED, "meta.extra.pajek.firstMode is not a count within 0..nodeCount; the two-mode header is not written"));
+    }
+    return notes;
+}
 //# sourceMappingURL=exporter.js.map

package/dist/src/formats/pajek/exporter.js.map

@@ -1 +1 @@
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package/dist/src/formats/pajek/importer.d.ts

@@ -142,6 +142,10 @@ export declare const PAJEK_ISSUE: Readonly<{
     NEGATIVE_LIST_ENTRY: "W_PAJEK_NEGATIVE_LIST_ENTRY";
     /** An integer beyond 2^53 was stored as the nearest 64-bit float; pass `long: "string"` to keep every digit. */
     PRECISION: "W_PRECISION";
+    /** A number alone at the end of a row, after its parameters (Pajek writes a trailing `0`); it is ignored. */
+    TRAILING_VALUE: "W_PAJEK_TRAILING_VALUE";
+    /** A line whose value is `NaN`; the line is kept without a value. */
+    NAN_VALUE: "W_PAJEK_NAN_VALUE";
     INVALID_ID: "E_INVALID_ID";
     INVALID_WEIGHT: "E_INVALID_WEIGHT";
     DUPLICATE_EDGE: "E_DUPLICATE_EDGE";

package/dist/src/formats/pajek/importer.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"importer.d.ts","sourceRoot":"","sources":["../../../../src/formats/pajek/importer.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;GAgBG;AA+CH,OAAO,EACH,KAAK,mBAAmB,EACxB,KAAK,kBAAkB,EACvB,KAAK,aAAa,EAGrB,MAAM,gBAAgB,CAAC;AA0BxB;;;GAGG;AACH,MAAM,WAAW,kBAAmB,SAAQ,kBAAkB,EAAE,mBAAmB;IAC/E;;;;OAIG;IACH,WAAW,CAAC,EAAE,CAAC,GAAG,CAAC,GAAG,MAAM,GAAG,SAAS,CAAC;CAC5C;AAED;;;GAGG;AACH,eAAO,MAAM,WAAW;IAGpB,sDAAsD;;IAEtD;;;OAGG;;IAEH,kFAAkF;;IAElF,kEAAkE;;IAElE,mGAAmG;;IAEnG;;;OAGG;;IAEH;;;OAGG;;IAEH,uHAAuH;;IAEvH,oFAAoF;;IAEpF,mDAAmD;;IAEnD,kDAAkD;;IAElD,4DAA4D;;IAE5D,iFAAiF;;IAEjF,kDAAkD;;IAElD,2HAA2H;;IAE3H,qEAAqE;;IAErE;;;OAGG;;IAEH,iGAAiG;;IAEjG,uCAAuC;;IAEvC,0FAA0F;;IAE1F,iFAAiF;;IAEjF,2JAA2J;;IAE3J,iHAAiH;;IAEjH,gFAAgF;;IAEhF,sDAAsD;;IAEtD,0IAA0I;;IAE1I,kDAAkD;;IAElD,+EAA+E;;IAE/E,4GAA4G;;IAE5G;;;OAGG;;IAEH,uHAAuH;;IAEvH;;;OAGG;;IAEH,oGAAoG;;IAEpG,6GAA6G;;IAE7G,kGAAkG;;IAElG;;;OAGG;;IAEH,iHAAiH;;IAEjH,oEAAoE;;IAEpE,yEAAyE;;IAEzE,yEAAyE;;IAEzE,0IAA0I;;IAE1I,iFAAiF;;IAEjF,iFAAiF;;IAEjF,gHAAgH;;;;;;;;;;;;;EAElH,CAAC;AA6gDH;;;GAGG;AACH,eAAO,MAAM,aAAa,EAAE,aAAa,CAAC,kBAAkB,CA0H1D,CAAC"}
+{"version":3,"file":"importer.d.ts","sourceRoot":"","sources":["../../../../src/formats/pajek/importer.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;GAgBG;AA+CH,OAAO,EACH,KAAK,mBAAmB,EACxB,KAAK,kBAAkB,EACvB,KAAK,aAAa,EAGrB,MAAM,gBAAgB,CAAC;AA4BxB;;;GAGG;AACH,MAAM,WAAW,kBAAmB,SAAQ,kBAAkB,EAAE,mBAAmB;IAC/E;;;;OAIG;IACH,WAAW,CAAC,EAAE,CAAC,GAAG,CAAC,GAAG,MAAM,GAAG,SAAS,CAAC;CAC5C;AAED;;;GAGG;AACH,eAAO,MAAM,WAAW;IAGpB,sDAAsD;;IAEtD;;;OAGG;;IAEH,kFAAkF;;IAElF,kEAAkE;;IAElE,mGAAmG;;IAEnG;;;OAGG;;IAEH;;;OAGG;;IAEH,uHAAuH;;IAEvH,oFAAoF;;IAEpF,mDAAmD;;IAEnD,kDAAkD;;IAElD,4DAA4D;;IAE5D,iFAAiF;;IAEjF,kDAAkD;;IAElD,2HAA2H;;IAE3H,qEAAqE;;IAErE;;;OAGG;;IAEH,iGAAiG;;IAEjG,uCAAuC;;IAEvC,0FAA0F;;IAE1F,iFAAiF;;IAEjF,2JAA2J;;IAE3J,iHAAiH;;IAEjH,gFAAgF;;IAEhF,sDAAsD;;IAEtD,0IAA0I;;IAE1I,kDAAkD;;IAElD,+EAA+E;;IAE/E,4GAA4G;;IAE5G;;;OAGG;;IAEH,uHAAuH;;IAEvH;;;OAGG;;IAEH,oGAAoG;;IAEpG,6GAA6G;;IAE7G,kGAAkG;;IAElG;;;OAGG;;IAEH,iHAAiH;;IAEjH,oEAAoE;;IAEpE,yEAAyE;;IAEzE,yEAAyE;;IAEzE,0IAA0I;;IAE1I,iFAAiF;;IAEjF,iFAAiF;;IAEjF,gHAAgH;;IAEhH,6GAA6G;;IAE7G,qEAAqE;;;;;;;;;;;;;EAEvE,CAAC;AA2kDH;;;GAGG;AACH,eAAO,MAAM,aAAa,EAAE,aAAa,CAAC,kBAAkB,CA2H1D,CAAC"}

package/dist/src/formats/pajek/importer.js

@@ -27,7 +27,8 @@ import { agree, plural } from "../../common/plural.js";
 import { ImportReportBuilder } from "../../common/report.js";
 import { isNumericText, TextCellWriter, WIDENING_UNSUPPORTED_CODE } from "../../common/text.js";
 import { isWeightField, parseWeightText } from "../../common/weights.js";
-import { decodeCharacterReferences, isCommentOrBlank, isIntervalToken, isProjectObject, isSectionLine, isShapeKeyword, isVertexNumber, LABEL_COLUMN, ORIGINAL_ID_KEY, parseIntervals, parseSectionHeader, PARTITION_COLUMN, POSITION_COLUMN, RELATION_COLUMN, SHAPE_COLUMN, SPELLS_COLUMN, tokenize, VALUE_COLUMN, VALUE_FIELD, VECTOR_COLUMN, } from "./syntax.js";
+import { pajekStyles } from "./styles.js";
+import { decodeCharacterReferences, isCommentOrBlank, isIntervalToken, isProjectObject, isSectionLine, isShapeKeyword, isVertexNumber, LABEL_COLUMN, ORIGINAL_ID_KEY, PAJEK_STYLE_COMMENT, parseIntervals, parseSectionHeader, PARTITION_COLUMN, POSITION_COLUMN, RELATION_COLUMN, SHAPE_COLUMN, SPELLS_COLUMN, tokenize, VALUE_COLUMN, VALUE_FIELD, VECTOR_COLUMN, } from "./syntax.js";
 /**
  * Issue codes of the Pajek importer.
  * @category Built-in formats
@@ -144,6 +145,10 @@ export const PAJEK_ISSUE = Object.freeze({
     NEGATIVE_LIST_ENTRY: "W_PAJEK_NEGATIVE_LIST_ENTRY",
     /** An integer beyond 2^53 was stored as the nearest 64-bit float; pass `long: "string"` to keep every digit. */
     PRECISION: PRECISION_CODE,
+    /** A number alone at the end of a row, after its parameters (Pajek writes a trailing `0`); it is ignored. */
+    TRAILING_VALUE: "W_PAJEK_TRAILING_VALUE",
+    /** A line whose value is `NaN`; the line is kept without a value. */
+    NAN_VALUE: "W_PAJEK_NAN_VALUE",
 });
 /** The common options the Pajek importer reads (the rest is reported by reportUnusedOptions). */
 const USED_OPTIONS = new Set([
@@ -168,6 +173,8 @@ const FIRST_VERTEX_VALUES = new Set([0, 1, "auto"]);
 /** A numeral that is not a finite number (`1e999`, `NaN`, `Infinity`): never a parameter key. */
 const NUMERAL = /^[+-]?(?:\d+(?:\.\d*)?|\.\d+)(?:e[+-]?\d+)?$/i;
 const NON_FINITE_WORD = /^[+-]?(?:nan|inf|infinity)$/i;
+/** A line value Pajek writes for a missing value. */
+const NAN_WORD = /^[+-]?nan$/i;
 const LABEL_DECL = {
     name: LABEL_COLUMN,
     dtype: "string",
@@ -203,7 +210,8 @@ function spellsDecl() {
     };
 }
 /**
- * The position column declaration (design section 5.2: f64 x 3, role position, units "file").
+ * The position column declaration (design section 5.2: f64 x 3, role position, units "file"), with
+ * its spelling for `extractPositions()`.
  * @param sourceDims - 2 or 3, the coordinate count of the first vertex line with coordinates
  * @returns a fresh declaration
  */
@@ -215,7 +223,9 @@ function positionDecl(sourceDims) {
         nullable: true,
         role: "position",
         origin: { format: "pajek", id: "coordinates" },
-        extra: { sourceDims, units: "file" },
+        // Pajek draws y downward (USAir97.net has Deadhorse, Alaska at y 0.10 and Miami at 0.53),
+        // centers depth on 0.5, and NetworkX writes "0.0 0.0" for a node with no position
+        extra: { sourceDims, units: "file", yAxis: "down", zOrigin: 0.5, zeroUnplaced: true },
     };
 }
 /** A problem with one line, recorded as an issue by the per-line catch. */
@@ -319,6 +329,8 @@ class PajekParser {
         /** Set when a header line starts the next network of a project file (that line is not consumed). */
         this.ended = false;
         this.edgeParams = new Map();
+        /** Whether a `% graphty.styles` comment was kept for the style reader. */
+        this.styleBlockKept = false;
         this.sink = sink;
         this.report = report;
         this.options = options;
@@ -326,6 +338,21 @@ class PajekParser {
         this.resolver = new DirectionResolver(sink, report, options.onMixedDirection);
         this.coercer = new IdCoercer(options.ids);
     }
+    /**
+     * Keep the first `% graphty.styles <json>` comment for the style reader (a file graphty wrote carries its styles
+     * there; Pajek skips comment lines).
+     * @param text - a comment or blank line
+     */
+    comment(text) {
+        if (this.styleBlockKept) {
+            return;
+        }
+        const trimmed = text.trimStart();
+        if (trimmed.startsWith(PAJEK_STYLE_COMMENT)) {
+            this.styleBlockKept = true;
+            this.report.keepForStyles(trimmed.slice(PAJEK_STYLE_COMMENT.length));
+        }
+    }
     /**
      * Handle one line; every problem of the line is recorded as an issue and the line skipped.
      * @param text - the line without its terminator
@@ -334,6 +361,7 @@ class PajekParser {
      */
     line(text, line) {
         if (isCommentOrBlank(text)) {
+            this.comment(text);
             return false;
         }
         const afterObjectHeader = this.objectHeader;
@@ -781,6 +809,7 @@ class PajekParser {
             i++;
         }
         const extras = this.extras(tokens, i, "node", line);
+        shape = extras.shape ?? shape;
         const restored = this.restoredId(extras);
         this.createNodes();
         // write
@@ -1000,6 +1029,10 @@ class PajekParser {
             valueText = tokens[i];
             i++;
         }
+        else if (i < tokens.length && NAN_WORD.test(tokens[i])) {
+            this.report.warnOnce("validation-error", PAJEK_ISSUE.NAN_VALUE, `a line value ${JSON.stringify(tokens[i])} is not a number; the line is kept without a value`, { line });
+            i++;
+        }
         const extras = this.extras(tokens, i, "edge", line);
         const { weightFrom } = this.options;
         let weight;
@@ -1225,7 +1258,7 @@ class PajekParser {
      * @returns the parsed extras
      */
     extras(tokens, start, domain, line) {
-        const extras = { keys: [], values: [], spells: null };
+        const extras = { keys: [], values: [], spells: null, shape: null };
         const seen = new Set();
         for (let i = start; i < tokens.length;) {
             const token = tokens[i];
@@ -1234,9 +1267,14 @@ class PajekParser {
                 i++;
                 continue;
             }
+            if (domain === "node" && isShapeKeyword(token)) {
+                extras.shape = token.toLowerCase();
+                i++;
+                continue;
+            }
             if (i + 1 >= tokens.length) {
-                this.skip(domain);
-                throw new LineError("parse-error", domain === "node" ? PAJEK_ISSUE.VERTEX_LINE : PAJEK_ISSUE.LINE, `parameter "${token}" has no value`);
+                this.loneLastToken(token, domain, line);
+                break;
             }
             if (seen.has(token)) {
                 this.report.warning("merged", PAJEK_ISSUE.DUPLICATE_ATTRIBUTE, `parameter ${JSON.stringify(token)} is given twice on one line; the later value ${JSON.stringify(tokens[i + 1])} stands`, { line, element: token });
@@ -1248,6 +1286,21 @@ class PajekParser {
         }
         return extras;
     }
+    /**
+     * A token alone at the end of a row, with no value after it: a number is ignored (reported once);
+     * anything else is a parameter without its value, which skips the row.
+     * @param token - the token
+     * @param domain - what is skipped when the row is malformed
+     * @param line - the line number
+     */
+    loneLastToken(token, domain, line) {
+        if (isNumericText(token)) {
+            this.report.warnOnce("validation-error", PAJEK_ISSUE.TRAILING_VALUE, `the number ${JSON.stringify(token)} alone at the end of a row is not a parameter; it is ignored`, { line });
+            return;
+        }
+        this.skip(domain);
+        throw new LineError("parse-error", domain === "node" ? PAJEK_ISSUE.VERTEX_LINE : PAJEK_ISSUE.LINE, `parameter "${token}" has no value`);
+    }
     /**
      * The spells of a row's interval token; a malformed one skips the row.
      * @param token - the token, starting with "["
@@ -1371,6 +1424,7 @@ export const pajekImporter = Object.freeze({
     options: Object.freeze(["firstVertex"]),
     extensions: Object.freeze([".net", ".paj"]),
     mimeTypes: Object.freeze(["text/x-pajek", "text/plain"]),
+    styles: pajekStyles,
     /**
      * Confidence that the input is a Pajek network: it starts with `*Vertices` (or `*Network`),
      * after any `%` comment lines.