@graphty/graph-io 0.3.29 → 0.3.31

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Files changed (141) hide show
  1. package/dist/chunks/{choose-DT5da6OC.js → choose-BJq_vp1b.js} +2 -2
  2. package/dist/chunks/{choose-DT5da6OC.js.map → choose-BJq_vp1b.js.map} +1 -1
  3. package/dist/chunks/{constants-DowRD9ai.js → constants-Bw-6JQuC.js} +2 -2
  4. package/dist/chunks/{constants-DowRD9ai.js.map → constants-Bw-6JQuC.js.map} +1 -1
  5. package/dist/chunks/{escape-DQC5HWqF.js → escape-CnTfa_y8.js} +2 -2
  6. package/dist/chunks/{escape-DQC5HWqF.js.map → escape-CnTfa_y8.js.map} +1 -1
  7. package/dist/chunks/{export-CVi12U7J.js → export-ZucVKiU4.js} +97 -91
  8. package/dist/chunks/{export-CVi12U7J.js.map → export-ZucVKiU4.js.map} +1 -1
  9. package/dist/chunks/{exporter-JubAlNWi.js → exporter-BOLJIzvA.js} +5 -5
  10. package/dist/chunks/exporter-BOLJIzvA.js.map +1 -0
  11. package/dist/chunks/{exporter-C3Pa2PSd.js → exporter-DRNkA2k0.js} +9 -10
  12. package/dist/chunks/exporter-DRNkA2k0.js.map +1 -0
  13. package/dist/chunks/{exporter-Cy_1da4c.js → exporter-DgDjwLOm.js} +7 -8
  14. package/dist/chunks/exporter-DgDjwLOm.js.map +1 -0
  15. package/dist/chunks/{exporter-CgsO2nSl.js → exporter-hc2ZuqVe.js} +8 -7
  16. package/dist/chunks/{exporter-CgsO2nSl.js.map → exporter-hc2ZuqVe.js.map} +1 -1
  17. package/dist/chunks/{importer-Dej72hIF.js → importer-BAlFKpHP.js} +10 -9
  18. package/dist/chunks/importer-BAlFKpHP.js.map +1 -0
  19. package/dist/chunks/{importer-CDXlxXlS.js → importer-ByCd2CAY.js} +11 -20
  20. package/dist/chunks/importer-ByCd2CAY.js.map +1 -0
  21. package/dist/chunks/{importer-lLH9gQF_.js → importer-CaLIrkjL.js} +10 -19
  22. package/dist/chunks/importer-CaLIrkjL.js.map +1 -0
  23. package/dist/chunks/{importer-q-R-Q98w.js → importer-D7xB8oVV.js} +4 -4
  24. package/dist/chunks/{importer-q-R-Q98w.js.map → importer-D7xB8oVV.js.map} +1 -1
  25. package/dist/chunks/{importer-DLz2Vb4q.js → importer-DsNj_zoG.js} +5 -5
  26. package/dist/chunks/importer-DsNj_zoG.js.map +1 -0
  27. package/dist/chunks/{importer-BA_hZKo7.js → importer-WPz-AUz8.js} +6 -6
  28. package/dist/chunks/importer-WPz-AUz8.js.map +1 -0
  29. package/dist/chunks/{importer-DVxzzibh.js → importer-rjFCmKfx.js} +5 -5
  30. package/dist/chunks/{importer-DVxzzibh.js.map → importer-rjFCmKfx.js.map} +1 -1
  31. package/dist/chunks/{json-elements-1IUzkRNy.js → json-elements-CkC87El2.js} +12 -16
  32. package/dist/chunks/{json-elements-1IUzkRNy.js.map → json-elements-CkC87El2.js.map} +1 -1
  33. package/dist/chunks/{ontology-export-b0GLNIj-.js → ontology-export-BRErBO6J.js} +11 -9
  34. package/dist/chunks/ontology-export-BRErBO6J.js.map +1 -0
  35. package/dist/chunks/{records-CdyqwXeY.js → records-DwfSjH8c.js} +2 -2
  36. package/dist/chunks/{records-CdyqwXeY.js.map → records-DwfSjH8c.js.map} +1 -1
  37. package/dist/chunks/{text-CDgjbkLC.js → text-BEEWD-G1.js} +2 -2
  38. package/dist/chunks/{text-CDgjbkLC.js.map → text-BEEWD-G1.js.map} +1 -1
  39. package/dist/csv.js +4 -4
  40. package/dist/cx.js +1 -1
  41. package/dist/cx2.js +2 -2
  42. package/dist/cys.js +1 -1
  43. package/dist/dot.js +1 -1
  44. package/dist/gexf.js +9 -8
  45. package/dist/gexf.js.map +1 -1
  46. package/dist/gml.js +3 -3
  47. package/dist/graph-io.js +69 -69
  48. package/dist/graphml.js +2 -2
  49. package/dist/json.js +1 -1
  50. package/dist/neo4j.js +3 -3
  51. package/dist/obo.js +1 -1
  52. package/dist/pajek.js +1 -1
  53. package/dist/src/common/export.d.ts +6 -1
  54. package/dist/src/common/export.d.ts.map +1 -1
  55. package/dist/src/common/export.js +18 -2
  56. package/dist/src/common/export.js.map +1 -1
  57. package/dist/src/common/format.d.ts +0 -8
  58. package/dist/src/common/format.d.ts.map +1 -1
  59. package/dist/src/common/format.js +0 -10
  60. package/dist/src/common/format.js.map +1 -1
  61. package/dist/src/common/json-elements.d.ts +1 -9
  62. package/dist/src/common/json-elements.d.ts.map +1 -1
  63. package/dist/src/common/json-elements.js +2 -12
  64. package/dist/src/common/json-elements.js.map +1 -1
  65. package/dist/src/common/ontology-export.d.ts.map +1 -1
  66. package/dist/src/common/ontology-export.js +11 -15
  67. package/dist/src/common/ontology-export.js.map +1 -1
  68. package/dist/src/formats/cx/importer.d.ts.map +1 -1
  69. package/dist/src/formats/cx/importer.js +3 -3
  70. package/dist/src/formats/cx/importer.js.map +1 -1
  71. package/dist/src/formats/cx2/exporter.d.ts.map +1 -1
  72. package/dist/src/formats/cx2/exporter.js +2 -4
  73. package/dist/src/formats/cx2/exporter.js.map +1 -1
  74. package/dist/src/formats/cx2/importer.d.ts.map +1 -1
  75. package/dist/src/formats/cx2/importer.js +3 -3
  76. package/dist/src/formats/cx2/importer.js.map +1 -1
  77. package/dist/src/formats/cys/exporter.d.ts.map +1 -1
  78. package/dist/src/formats/cys/exporter.js +4 -3
  79. package/dist/src/formats/cys/exporter.js.map +1 -1
  80. package/dist/src/formats/dot/exporter.js +1 -1
  81. package/dist/src/formats/dot/importer.d.ts +2 -2
  82. package/dist/src/formats/dot/importer.d.ts.map +1 -1
  83. package/dist/src/formats/dot/importer.js +7 -11
  84. package/dist/src/formats/dot/importer.js.map +1 -1
  85. package/dist/src/formats/gexf/exporter.d.ts +2 -2
  86. package/dist/src/formats/gexf/exporter.d.ts.map +1 -1
  87. package/dist/src/formats/gexf/exporter.js +7 -5
  88. package/dist/src/formats/gexf/exporter.js.map +1 -1
  89. package/dist/src/formats/gexf/schema.js +1 -1
  90. package/dist/src/formats/json/exporter.js +1 -1
  91. package/dist/src/formats/json/importer.d.ts.map +1 -1
  92. package/dist/src/formats/json/importer.js +4 -6
  93. package/dist/src/formats/json/importer.js.map +1 -1
  94. package/dist/src/formats/obo/exporter.d.ts +2 -2
  95. package/dist/src/formats/obo/exporter.js +2 -2
  96. package/dist/src/formats/pajek/exporter.d.ts.map +1 -1
  97. package/dist/src/formats/pajek/exporter.js +5 -4
  98. package/dist/src/formats/pajek/exporter.js.map +1 -1
  99. package/dist/src/formats/pajek/importer.d.ts.map +1 -1
  100. package/dist/src/formats/pajek/importer.js +3 -7
  101. package/dist/src/formats/pajek/importer.js.map +1 -1
  102. package/dist/src/formats/pajek/syntax.d.ts +1 -1
  103. package/dist/src/formats/pajek/syntax.js +1 -1
  104. package/dist/src/formats/xgmml/constants.d.ts +1 -1
  105. package/dist/src/formats/xgmml/constants.js +1 -1
  106. package/dist/src/formats/xgmml/emit.js +1 -1
  107. package/dist/src/formats/xgmml/exporter.d.ts.map +1 -1
  108. package/dist/src/formats/xgmml/exporter.js +4 -3
  109. package/dist/src/formats/xgmml/exporter.js.map +1 -1
  110. package/dist/xgmml.js +2 -2
  111. package/package.json +2 -2
  112. package/src/common/export.ts +25 -3
  113. package/src/common/format.ts +0 -11
  114. package/src/common/json-elements.ts +2 -13
  115. package/src/common/ontology-export.ts +12 -17
  116. package/src/formats/cx/importer.ts +2 -3
  117. package/src/formats/cx2/exporter.ts +2 -4
  118. package/src/formats/cx2/importer.ts +2 -3
  119. package/src/formats/cys/exporter.ts +4 -3
  120. package/src/formats/dot/exporter.ts +1 -1
  121. package/src/formats/dot/importer.ts +7 -17
  122. package/src/formats/gexf/exporter.ts +7 -5
  123. package/src/formats/gexf/schema.ts +1 -1
  124. package/src/formats/json/exporter.ts +1 -1
  125. package/src/formats/json/importer.ts +4 -7
  126. package/src/formats/obo/exporter.ts +2 -2
  127. package/src/formats/pajek/exporter.ts +5 -4
  128. package/src/formats/pajek/importer.ts +3 -13
  129. package/src/formats/pajek/syntax.ts +1 -1
  130. package/src/formats/xgmml/constants.ts +1 -1
  131. package/src/formats/xgmml/emit.ts +1 -1
  132. package/src/formats/xgmml/exporter.ts +4 -3
  133. package/dist/chunks/exporter-C3Pa2PSd.js.map +0 -1
  134. package/dist/chunks/exporter-Cy_1da4c.js.map +0 -1
  135. package/dist/chunks/exporter-JubAlNWi.js.map +0 -1
  136. package/dist/chunks/importer-BA_hZKo7.js.map +0 -1
  137. package/dist/chunks/importer-CDXlxXlS.js.map +0 -1
  138. package/dist/chunks/importer-DLz2Vb4q.js.map +0 -1
  139. package/dist/chunks/importer-Dej72hIF.js.map +0 -1
  140. package/dist/chunks/importer-lLH9gQF_.js.map +0 -1
  141. package/dist/chunks/ontology-export-b0GLNIj-.js.map +0 -1
@@ -1,9 +1,9 @@
1
1
  import { GraphFormatError, INVALID_INDEX } from "@graphty/graph-format";
2
- import { c as capabilities, R as ROLE_TAKEN_CODE, C as COLUMN_RENAMED_CODE, o as DUPLICATE_ATTRIBUTE_CODE, g as UNKNOWN_ELEMENT_CODE, b6 as EMPTY_COLUMN_DROPPED_CODE, ai as PARENT_CYCLE_CODE, P as PRECISION_CODE, w as UNKNOWN_ENCODING_CODE, a2 as JSON_NONSTANDARD_NUMBER_CODE, x as ENCODING_FALLBACK_CODE, y as INVALID_ENCODING_CODE, z as INVALID_UTF8_CODE, O as OPTION_IGNORED_CODE, S as SINK_OPTION_CODE, H as HYPEREDGE_CODE, ad as TOO_LARGE_CODE, i as DANGLING_REFERENCE_CODE, ae as AMBIGUOUS_GRAPH_NAME_CODE, af as GRAPH_NOT_FOUND_CODE, l as MULTIPLE_GRAPHS_CODE, I as ID_MERGED_CODE, m as DUPLICATE_EDGE_ID_CODE, n as DUPLICATE_NODE_CODE, q as UNKNOWN_PARENT_CODE, a3 as BAD_VALUE_CODE, s as MISSING_ENDPOINT_CODE, t as MISSING_ID_CODE, ak as SYNTAX_CODE, E as EMPTY_INPUT_CODE, F as ELEMENT_ISSUE, G as INPUT_ISSUE, al as resolveImportOptions, a8 as ImportReportBuilder, bC as readText, b as plural, ao as reportSinkOptions, an as reportUnusedOptions, am as throwIfAborted, ar as IdCoercer, aq as DirectionResolver, $ as agree, as as weightFromValue, a0 as uniqueColumnName, a7 as chooseGraph, ap as graphChosen, a1 as declareResolved, aB as GRAPH_COLUMN_AS_METADATA_CODE, aC as TYPEDEF_NODES_CODE, aD as RELATION_ASSUMED_CODE, at as COLUMN_AS_PROPERTY_VALUE_CODE, p as pairFolding, e as explicitWeights, be as NONFINITE_AS_NULL_CODE, L as LOSS, b4 as DIRECTION_DROPPED_CODE, aA as NODE_ORDER_CODE, r as resolveExportOptions, b$ as otherFormatDialect, a as checkCapabilities, bE as countMixedEdges, aa as formatF32, ab as formatF64 } from "./export-CVi12U7J.js";
3
- import { M as MAYBE_UNSAFE_INTEGER, l as MAYBE_INEXACT_EXPONENT, m as rewriteNumbers, n as findDuplicateKeys, b as flipY } from "./json-elements-1IUzkRNy.js";
2
+ import { c as capabilities, R as ROLE_TAKEN_CODE, C as COLUMN_RENAMED_CODE, o as DUPLICATE_ATTRIBUTE_CODE, g as UNKNOWN_ELEMENT_CODE, b5 as EMPTY_COLUMN_DROPPED_CODE, ai as PARENT_CYCLE_CODE, P as PRECISION_CODE, w as UNKNOWN_ENCODING_CODE, a2 as JSON_NONSTANDARD_NUMBER_CODE, x as ENCODING_FALLBACK_CODE, y as INVALID_ENCODING_CODE, z as INVALID_UTF8_CODE, O as OPTION_IGNORED_CODE, S as SINK_OPTION_CODE, H as HYPEREDGE_CODE, ad as TOO_LARGE_CODE, i as DANGLING_REFERENCE_CODE, ae as AMBIGUOUS_GRAPH_NAME_CODE, af as GRAPH_NOT_FOUND_CODE, l as MULTIPLE_GRAPHS_CODE, I as ID_MERGED_CODE, m as DUPLICATE_EDGE_ID_CODE, n as DUPLICATE_NODE_CODE, q as UNKNOWN_PARENT_CODE, a3 as BAD_VALUE_CODE, s as MISSING_ENDPOINT_CODE, t as MISSING_ID_CODE, ak as SYNTAX_CODE, E as EMPTY_INPUT_CODE, F as ELEMENT_ISSUE, G as INPUT_ISSUE, al as resolveImportOptions, a8 as ImportReportBuilder, bB as readText, b as plural, ao as reportSinkOptions, an as reportUnusedOptions, am as throwIfAborted, ar as IdCoercer, aq as DirectionResolver, $ as agree, as as weightFromValue, a0 as uniqueColumnName, a7 as chooseGraph, ap as graphChosen, a1 as declareResolved, aB as GRAPH_COLUMN_AS_METADATA_CODE, aC as TYPEDEF_NODES_CODE, aD as RELATION_ASSUMED_CODE, at as COLUMN_AS_PROPERTY_VALUE_CODE, p as pairFolding, e as explicitWeights, bd as NONFINITE_AS_NULL_CODE, L as LOSS, b3 as DIRECTION_DROPPED_CODE, aA as NODE_ORDER_CODE, r as resolveExportOptions, b_ as otherFormatDialect, a as checkCapabilities, bD as countMixedEdges, aa as formatF32, ab as formatF64 } from "./export-ZucVKiU4.js";
3
+ import { M as MAYBE_UNSAFE_INTEGER, j as MAYBE_INEXACT_EXPONENT, l as rewriteNumbers, m as findDuplicateKeys, f as flipY } from "./json-elements-CkC87El2.js";
4
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  import { j as joinText, e as encodeChunks, i as indentUnit } from "./writer-DxjgHwSe.js";
5
- import { t as trimTrailingZeros } from "./text-CDgjbkLC.js";
6
- import { d as OBOGRAPHS_PREDICATE_TAGS, g as compactOboIri, o as oboColumnDecl, P as PLACEHOLDER_COLUMN, h as synonymScopeOf, O as OBO_NODE_COLUMNS, c as capabilityNotes, s as slotColumn, e as emptyColumnNotes, j as OBO_PURL, f as framelessNodes, m as movedNodes, U as UNWRITTEN_ROLES, n as notePropertyColumn, a as cellOf, v as valuesOf, k as OBO_IN_OWL, b as fitsVocabulary, t as textOf, S as SYNONYM_SCOPES } from "./ontology-export-b0GLNIj-.js";
5
+ import { t as trimTrailingZeros } from "./text-BEEWD-G1.js";
6
+ import { d as OBOGRAPHS_PREDICATE_TAGS, g as compactOboIri, o as oboColumnDecl, P as PLACEHOLDER_COLUMN, h as synonymScopeOf, O as OBO_NODE_COLUMNS, c as capabilityNotes, s as slotColumn, e as emptyColumnNotes, j as OBO_PURL, f as framelessNodes, m as movedNodes, U as UNWRITTEN_ROLES, n as notePropertyColumn, a as cellOf, v as valuesOf, k as OBO_IN_OWL, b as fitsVocabulary, t as textOf, S as SYNONYM_SCOPES } from "./ontology-export-BRErBO6J.js";
7
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  const JSON_DIALECTS = Object.freeze([
8
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  "node-link",
9
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  "d3",
@@ -2860,7 +2860,7 @@ function importCytoscape(ctx, root) {
2860
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  const positionColumn = ctx.nodes.declareIf(
2861
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  {
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  name: POSITION_COLUMN,
2863
- dtype: "f32",
2863
+ dtype: "f64",
2864
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  components: 3,
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  role: "position",
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  mutable: true,
@@ -2939,7 +2939,7 @@ function importCytoscape(ctx, root) {
2939
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  report.error(
2940
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  "validation-error",
2941
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  JSON_ISSUE.BAD_VALUE,
2942
- `${element}: position must be an object with numeric x and y (and z) that are finite and within the f32 range`,
2942
+ `${element}: position must be an object with numeric x and y (and z) that are finite numbers`,
2943
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  { element }
2944
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  );
2945
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  }
@@ -3086,9 +3086,8 @@ function cytoscapeSections(ctx, elements) {
3086
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  function hasPositionZ(element) {
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  return isJsonObject(element) && isJsonObject(element.position) && typeof element.position.z === "number";
3088
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  }
3089
- const F32_MAX = 34028234663852886e22;
3090
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  function isCoordinate(value) {
3091
- return typeof value === "number" && Number.isFinite(value) && Math.abs(value) <= F32_MAX;
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+ return typeof value === "number" && Number.isFinite(value);
3092
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  }
3093
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  function isNodeElement(element) {
3094
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  if (element.group === "nodes") {
@@ -5027,7 +5026,7 @@ function plan(snapshot, resolved) {
5027
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  const caps = dialectCapabilities(dialect);
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  const notes = checkCapabilities(snapshot, caps, resolved.common, {
5029
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  roles: SLOT_ROLES[dialect],
5030
- positionDtype: "f32"
5029
+ positionDtype: "f64"
5031
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  }).filter((n) => n.code !== LOSS.POSITIONS && n.code !== LOSS.EDGE_IDS_DROPPED);
5032
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  const note = (code, message, column = null, count = null) => {
5033
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  notes.push(Object.freeze({ code, message, column, count }));
@@ -5935,4 +5934,4 @@ export {
5935
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  rankFormats as r,
5936
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  sniffFormat as s
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  };
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- //# sourceMappingURL=exporter-C3Pa2PSd.js.map
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+ //# sourceMappingURL=exporter-DRNkA2k0.js.map