@graphty/graph-io 0.3.25 → 0.3.27

package/dist/src/formats/csv/records.js.map

@@ -1 +1 @@
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package/dist/src/formats/csv/values.d.ts

@@ -16,6 +16,7 @@ import { type GraphSink } from "@graphty/graph-format";
 import { type ImportReportBuilder } from "../../common/report.js";
 /**
  * One inferred attribute column of a node or edge table, written cell by cell.
+ * @category Plugin helpers
  */
 export declare class InferredColumn {
     /** The column name in the sink. */

package/dist/src/formats/csv/values.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"values.d.ts","sourceRoot":"","sources":["../../../../src/formats/csv/values.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AAEH,OAAO,EAAuC,KAAK,SAAS,EAAiB,MAAM,uBAAuB,CAAC;AAG3G,OAAO,EAAE,KAAK,mBAAmB,EAAE,MAAM,wBAAwB,CAAC;AAGlE;;GAEG;AACH,qBAAa,cAAc;IACvB,mCAAmC;IACnC,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IAEtB,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAkB;IAEzC,OAAO,CAAC,QAAQ,CAAC,IAAI,CAAY;IAEjC,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAsB;IAE7C,OAAO,CAAC,MAAM,CAA+C;IAE7D,wGAAwG;IACxG,OAAO,CAAC,IAAI,CAAS;IAErB,gEAAgE;IAChE,OAAO,CAAC,IAAI,CAAS;IAErB,0EAA0E;IAC1E,OAAO,CAAC,OAAO,CAAS;IAExB,+FAA+F;IAC/F,OAAO,CAAC,SAAS,CAAQ;IAEzB,OAAO,CAAC,QAAQ,CAAC,SAAS,CAAgB;IAE1C,4GAA4G;IAC5G,OAAO,CAAC,MAAM,CAA+B;IAE7C,OAAO,CAAC,QAAQ,CAAC,WAAW,CAAgB;IAE5C,OAAO,CAAC,QAAQ,CAAC,YAAY,CAAgB;IAE7C;;;;;;;OAOG;gBAEC,IAAI,EAAE,MAAM,EACZ,MAAM,EAAE,MAAM,GAAG,MAAM,EACvB,IAAI,EAAE,SAAS,EACf,MAAM,EAAE,mBAAmB,EAC3B,UAAU,GAAE,MAAyB;IASzC;;;OAGG;IACH,IAAI,MAAM,IAAI,OAAO,CAEpB;IAED;;;;OAIG;IACH,KAAK,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,IAAI;IAgBtC;;;OAGG;IACH,MAAM,IAAI,IAAI;IAYd;;;;;;OAMG;IACH,OAAO,CAAC,MAAM;IA0Bd;;;;;OAKG;IACH,OAAO,CAAC,IAAI;IAUZ;;;;;OAKG;IACH,OAAO,CAAC,GAAG;IAQX;;;OAGG;IACH,OAAO,CAAC,MAAM;IAId;;;;OAIG;IACH,OAAO,CAAC,SAAS;IAcjB;;;;OAIG;IACH,OAAO,CAAC,OAAO;CAIlB"}
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package/dist/src/formats/csv/values.js

@@ -17,6 +17,7 @@ import { DICT_SAMPLE_ROWS, DictHeuristic } from "../../common/attributes.js";
 import { inferTextDtype, parseTextCell, TextCellWriter } from "../../common/text.js";
 /**
  * One inferred attribute column of a node or edge table, written cell by cell.
+ * @category Plugin helpers
  */
 export class InferredColumn {
     /**

package/dist/src/formats/csv/values.js.map

@@ -1 +1 @@
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package/dist/src/formats/cx/exporter.d.ts

@@ -0,0 +1,102 @@
+/**
+ * The CX version 1 exporter (design/graph-io/cytoscape-and-obo/design.md section 1.2): writes a
+ * snapshot as the NDEx form of a CX document -- one network with at most one view, no
+ * `cySubNetworks` -- which NDEx, ndex2 and Cytoscape's CX import all read.
+ *
+ * Aspects, in the order Cytoscape and NDEx write them: `numberVerification`, the pre-`metaData`
+ * (element counts, `idCounter` on nodes, edges, citations and supports), `nodes` (`n` the label,
+ * `r` the `represents` column), `edges` (`i` the `interaction` column), `nodeAttributes`,
+ * `edgeAttributes` and `networkAttributes` (values as JSON strings, the spec's form), `cyTableColumn`
+ * (so a column no element fills is still declared), `cartesianLayout` (y negated back to screen
+ * coordinates), `cyGroups` from the parent / parents column, `cyVisualProperties` from the
+ * `cx.bypass` columns, the provenance aspects a CX import created, the style rules and unknown
+ * aspects a CX import kept, and `status`.
+ *
+ * What CX cannot hold is announced by check() before anything is written: every edge is directed
+ * (W_CX_UNDIRECTED_AS_DIRECTED, W_MUTUAL_EXPANDED), node ids are integers (E_ID_CHARSET unless
+ * `sanitizeIds: "mangle"`, which keeps the original in the `graphty:originalId` attribute the
+ * importer restores), nested values are written as JSON text (W_CX_JSON_AS_STRING), and the generic
+ * notes of checkCapabilities(). NaN and the infinities are written as "NaN" / "Infinity" in double
+ * attributes, which read back as they were.
+ */
+import { type CommonExportOptions, type ExportCapabilities, type GraphExporter } from "../../types.js";
+/**
+ * The options of the CX exporter: the common export options; it has none of its own.
+ * @category Built-in formats
+ */
+export type CxExportOptions = CommonExportOptions;
+/**
+ * The loss notes the CX exporter's check() returns, by name. A key is the code without its
+ * severity and format prefixes.
+ * @category Built-in formats
+ */
+export declare const CX_LOSS: Readonly<{
+    /**
+     * Every edge is written as directed, so an undirected graph, or the undirected edges of a mixed graph, read back
+     * as directed.
+     */
+    UNDIRECTED_AS_DIRECTED: "W_CX_UNDIRECTED_AS_DIRECTED";
+    /** A nested (json) column is written as a string attribute holding its JSON text. */
+    JSON_AS_STRING: "W_CX_JSON_AS_STRING";
+    /** A mutual pair is written as two directed edges without its mark. */
+    MUTUAL_EXPANDED: "W_MUTUAL_EXPANDED";
+    /**
+     * An attribute named `weight` without the weight role reads back as the edge weight, or is not written when the
+     * graph has weights of its own.
+     */
+    WEIGHT_KEY_CLASH: "W_WEIGHT_KEY_CLASH";
+    /** A start / end / timestamp column: CX has no time. */
+    TEMPORAL_DROPPED: "W_TEMPORAL_DROPPED";
+    /** An attribute with a role the format has no place for is written as a plain attribute; the role is lost. */
+    ROLE_DROPPED: "W_ROLE_DROPPED";
+    /**
+     * An attribute without a role is written where the format keeps a role (for example, a `name` column as the label), and
+     * reads back with that role.
+     */
+    ROLE_ASSUMED: "W_ROLE_ASSUMED";
+    /**
+     * An attribute type CX stores as another (a 32-bit float as double, an unsigned integer as long, a byte as
+     * integer, a dictionary as string); it reads back with that type.
+     */
+    DTYPE_UNSUPPORTED: "W_DTYPE_UNSUPPORTED";
+    /** A multi-component column (a second view's `position@2`, a vector) is written as a list of doubles. */
+    COMPONENTS_FLATTENED: "W_COMPONENTS_FLATTENED";
+    /** A declared default: CX has none. */
+    DEFAULT_DROPPED: "W_DEFAULT_DROPPED";
+    /** Declared options: CX has no enumerations. */
+    OPTIONS_DROPPED: "W_OPTIONS_DROPPED";
+    /**
+     * Node ids the format cannot write, under `sanitizeIds: "error"`; the save fails with E_INVALID_ID. Pass
+     * `sanitizeIds: "mangle"` to rewrite them.
+     */
+    ID_CHARSET: "E_ID_CHARSET";
+    /** Node ids that are not integers under sanitizeIds "mangle": renumbered, originals kept. */
+    ID_MANGLED: "W_ID_MANGLED";
+    /** Edges without a usable integer id get generated ids. */
+    EDGE_IDS_GENERATED: "W_EDGE_IDS_GENERATED";
+    /**
+     * An attribute with a role (for example, the label) is written where the format keeps that role, and reads back under the
+     * name the format's importer gives it.
+     */
+    COLUMN_NAME_CHANGED: "W_COLUMN_NAME_CHANGED";
+    /** An extension table other than the `cx:citations` / `cx:supports` tables a CX import creates. */
+    EXTENSION_TABLE_DROPPED: "W_EXTENSION_TABLE_DROPPED";
+    /** A position, stacking order or weight that is NaN or infinite: CX spells no such number there. */
+    NONFINITE_AS_NULL: "W_NONFINITE_AS_NULL";
+    /** Visual columns (color, size, shape, thickness roles): CX keeps style as visual properties, not roles. */
+    VIZ_DROPPED: "W_VIZ_DROPPED";
+}>;
+/**
+ * What CX version 1 keeps: directed multigraphs with self-loops, integer node ids, required
+ * integer edge ids, typed string / double / integer / boolean attributes and lists of them, network
+ * attributes, the position role (one view), and containment as `cyGroups`. f32, u32, u8 and dict
+ * columns are written as the nearest declared type and read back as it.
+ * @category Built-in formats
+ */
+export declare const CX_CAPABILITIES: ExportCapabilities;
+/**
+ * The CX version 1 exporter plugin.
+ * @category Built-in formats
+ */
+export declare const cxExporter: GraphExporter<CxExportOptions>;
+//# sourceMappingURL=exporter.d.ts.map

package/dist/src/formats/cx/exporter.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"exporter.d.ts","sourceRoot":"","sources":["../../../../src/formats/cx/exporter.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;GAoBG;AAwBH,OAAO,EAAE,KAAK,mBAAmB,EAAE,KAAK,kBAAkB,EAAE,KAAK,aAAa,EAAiB,MAAM,gBAAgB,CAAC;AAMtH;;;GAGG;AACH,MAAM,MAAM,eAAe,GAAG,mBAAmB,CAAC;AAElD;;;;GAIG;AACH,eAAO,MAAM,OAAO;IAChB;;;OAGG;;IAEH,qFAAqF;;IAErF,uEAAuE;;IAEvE;;;OAGG;;IAEH,wDAAwD;;IAExD,8GAA8G;;IAE9G;;;OAGG;;IAEH;;;OAGG;;IAEH,yGAAyG;;IAEzG,uCAAuC;;IAEvC,gDAAgD;;IAEhD;;;OAGG;;IAEH,6FAA6F;;IAE7F,2DAA2D;;IAE3D;;;OAGG;;IAEH,mGAAmG;;IAEnG,oGAAoG;;IAEpG,4GAA4G;;EAE9G,CAAC;AAEH;;;;;;GAMG;AACH,eAAO,MAAM,eAAe,EAAE,kBAiB5B,CAAC;AAsxCH;;;GAGG;AACH,eAAO,MAAM,UAAU,EAAE,aAAa,CAAC,eAAe,CAkCpD,CAAC"}