@graphty/graph-io 0.3.25 → 0.3.27

package/dist/src/formats/pajek/exporter.js

@@ -15,9 +15,10 @@ import { GraphFormatError } from "@graphty/graph-format";
 import { pairFolding } from "../../common/direction.js";
 import { isPajekLabel, quotePajekLabel } from "../../common/escape.js";
 import { capabilities, checkCapabilities, LOSS, sanitizeIds } from "../../common/export.js";
-import { formatDecimal, formatF32, formatF64, formatInteger } from "../../common/format.js";
+import { formatDecimal, formatF32, formatInteger, idText } from "../../common/format.js";
 import { canonicalId } from "../../common/ids.js";
 import { resolveExportOptions } from "../../common/options.js";
+import { agree, plural } from "../../common/plural.js";
 import { inferTextDtype } from "../../common/text.js";
 import { explicitWeights } from "../../common/weights.js";
 import { encodeChunks, joinText } from "../../common/writer.js";
@@ -26,35 +27,57 @@ import { encodeCharacterReferences, formatIntervals, isParameterKey, LABEL_COLUM
  * The LossNote codes of the Pajek exporter's check(): the Pajek-specific ones and, aliased, the
  * shared ones it records itself (`LOSS` holds the rest of the generic pre-flight's codes). A key
  * is the code without its severity and format prefixes.
+ * @category Built-in formats
  */
 export const PAJEK_LOSS = Object.freeze({
-    /** A label or text value holds a double quote or a line break; export() will throw E_UNSUPPORTED. */
+    /**
+     * A label or text value holds a double quote or a line break, which Pajek cannot write; the save fails with
+     * E_UNSUPPORTED.
+     */
     TEXT: "E_PAJEK_TEXT",
     /** A column whose name cannot be a parameter key (whitespace, a quote, numeric, a shape keyword); skipped. */
     KEY_DROPPED: "W_PAJEK_KEY_DROPPED",
-    /** A label role column that is not text; its values are written as text and re-import as string. */
+    /**
+     * The node label attribute holds numbers or other values that are not text; they are written as text and read back
+     * as text.
+     */
     LABEL_AS_TEXT: "W_PAJEK_LABEL_AS_TEXT",
-    /** A non-finite f64 value; written as Infinity / NaN text, which re-imports as string. */
+    /** NaN or an infinity is written as the text Infinity or NaN, which reads back as text. */
     NONFINITE_AS_TEXT: "W_PAJEK_NONFINITE_AS_TEXT",
     /** A mutual pair; written as one undirected edge, the mark lost. */
     MUTUAL_AS_UNDIRECTED: LOSS.MUTUAL_AS_UNDIRECTED,
     /** A start / end / timestamp role column; Pajek intervals are written from the spells role only. */
     TEMPORAL_DROPPED: LOSS.TEMPORAL,
-    /** A position column with a stride other than 2 or 3. */
+    /** A position with other than 2 or 3 coordinates is not written. */
     POSITION_STRIDE: "W_PAJEK_POSITION_STRIDE",
-    /** meta.extra.pajek.firstMode is not a count within 0..N; the two-mode header is not written. */
+    /**
+     * The graph's two-mode vertex count (`meta.extra.pajek.firstMode`) is not between 0 and the number of nodes, so
+     * the file is written as a one-mode network.
+     */
     FIRST_MODE_DROPPED: "W_PAJEK_FIRST_MODE_DROPPED",
-    /** A role column Pajek has no slot for (kind, ...) written as a plain parameter; the role is lost. */
+    /** An attribute with a role the format has no place for is written as a plain attribute; the role is lost. */
     ROLE_DROPPED: LOSS.ROLE,
-    /** A `shape` column with a value outside the shape keywords is written as a parameter (a string on re-import). */
+    /**
+     * A `shape` attribute whose value is not one of Pajek's shape names is written as a parameter, and reads back as a
+     * plain text attribute.
+     */
     SHAPE_AS_PARAMETER: "W_PAJEK_SHAPE_AS_PARAMETER",
     /** A vertex line with coordinates, a shape or parameters needs a label: the id text is written and reads back as a label. */
     LABEL_GAINED: "W_PAJEK_LABEL_GAINED",
-    /** A role-less node column named `label` reads back with the label role (its values become the vertex labels). */
+    /**
+     * An attribute without a role is written where the format keeps a role (for example, a `name` column as the label), and
+     * reads back with that role.
+     */
     ROLE_ASSUMED: LOSS.ROLE_ASSUMED,
-    /** Under sanitizeIds "mangle": an original id whose text reads back as the other type under ids "canonical". */
+    /**
+     * With `sanitizeIds: "mangle"`: an original id that reads back as a different type, such as the text "7" as the
+     * number 7.
+     */
     ID_TEXT_TYPE: LOSS.ID_TEXT_TYPE,
-    /** Parameter text that looks like a number or a boolean reads back as one (parameters are untyped, design 5.1). */
+    /**
+     * A text value that reads back as a number or a boolean, because the format does not record that it was text (the
+     * text "42" reads back as the number 42).
+     */
     TEXT_INFERRED: LOSS.TEXT_INFERRED,
 });
 /** The roles Pajek has a slot for beyond the structural, position and temporal ones. */
@@ -214,7 +237,7 @@ function labelNotes(snapshot, nodePlan, notes) {
         }
     }
     if (gained > 0) {
-        notes.push(note(PAJEK_LOSS.LABEL_GAINED, `${gained} vertex line(s) carry coordinates, a shape or parameters and need a label; the id text is written there and reads back as a label`, labels === null ? LABEL_COLUMN : labels.meta.name, gained));
+        notes.push(note(PAJEK_LOSS.LABEL_GAINED, `${gained} vertex line${plural(gained)} ${agree(gained, "carries", "carry")} coordinates, a shape or parameters and need a label; the id text is written there and reads back as a label`, labels === null ? LABEL_COLUMN : labels.meta.name, gained));
     }
 }
 /**
@@ -344,13 +367,13 @@ function checkCells(planned, domain, notes) {
             }
         }
         if (badText > 0) {
-            notes.push(note(PAJEK_LOSS.TEXT, `${badText} value(s) of ${domain} column "${name}" hold a double quote or a line break; Pajek cannot write them`, name, badText));
+            notes.push(note(PAJEK_LOSS.TEXT, `${badText} value${plural(badText)} of ${domain} column "${name}" hold a double quote or a line break; Pajek cannot write them`, name, badText));
         }
         if (typed > 0) {
-            notes.push(note(PAJEK_LOSS.TEXT_INFERRED, `${typed} value(s) of ${domain} column "${name}" look like numbers or booleans; Pajek parameters are untyped and they read back as such`, name, typed));
+            notes.push(note(PAJEK_LOSS.TEXT_INFERRED, `${typed} value${plural(typed)} of ${domain} column "${name}" look like numbers or booleans; Pajek parameters are untyped and they read back as such`, name, typed));
         }
         if (nonFinite > 0) {
-            notes.push(note(PAJEK_LOSS.NONFINITE_AS_TEXT, `${nonFinite} non-finite value(s) of ${domain} column "${name}" are written as text`, name, nonFinite));
+            notes.push(note(PAJEK_LOSS.NONFINITE_AS_TEXT, `${nonFinite} non-finite value${plural(nonFinite)} of ${domain} column "${name}" ${agree(nonFinite, "is", "are")} written as text`, name, nonFinite));
         }
     }
 }
@@ -371,7 +394,7 @@ function firstModeOf(snapshot) {
     if (typeof value === "number" && Number.isInteger(value) && value >= 0 && value <= snapshot.nodeCount) {
         return value;
     }
-    return NaN;
+    return Number.NaN;
 }
 /**
  * The label of a vertex: the label column's value when set, the id's text when the id is not
@@ -392,14 +415,6 @@ function labelOf(labels, ids, i, needed) {
     }
     return null;
 }
-/**
- * The text of an id.
- * @param id - the id
- * @returns String(id)
- */
-function idText(id) {
-    return typeof id === "number" ? formatF64(id) : id;
-}
 /**
  * The spells text of a row, or null when unset or empty.
  * @param column - the spells list column
@@ -469,6 +484,7 @@ function needsZ(column) {
  * @param snapshot - the snapshot
  * @param options - the resolved format options
  * @param options.networkHeader - whether the `*Network` line is written
+ * @param options.name - the name on that line, or null for a bare line
  * @param options.mangle - whether the original ids are written as `graphty_originalId` parameters
  * @yields lines with their terminator
  * @returns nothing
@@ -491,8 +507,8 @@ function* writeParts(snapshot, options) {
             });
         }
     }
-    if (options.networkHeader && snapshot.meta.name !== null) {
-        yield `*Network ${snapshot.meta.name}\n`;
+    if (options.networkHeader) {
+        yield options.name === null ? "*Network\n" : `*Network ${options.name}\n`;
     }
     const firstMode = firstModeOf(snapshot);
     yield firstMode !== null && !Number.isNaN(firstMode)
@@ -541,10 +557,10 @@ function checkIdTexts(nodeCount, ids, mangle, notes) {
         }
     }
     if (badText > 0) {
-        notes.push(note(PAJEK_LOSS.TEXT, `${badText} node id(s) hold a double quote or a line break; Pajek cannot write them as labels or parameters`, null, badText));
+        notes.push(note(PAJEK_LOSS.TEXT, `${badText} node id${plural(badText)} ${agree(badText, "holds", "hold")} a double quote or a line break; Pajek cannot write them as labels or parameters`, null, badText));
     }
     if (typeChanged > 0) {
-        notes.push(note(PAJEK_LOSS.ID_TEXT_TYPE, `${typeChanged} original id(s) read back from ${ORIGINAL_ID_KEY} as the other type under ids: "canonical" (a string "1" becomes 1, a number 1.5 becomes "1.5")`, null, typeChanged));
+        notes.push(note(PAJEK_LOSS.ID_TEXT_TYPE, `${typeChanged} original id${plural(typeChanged)} ${agree(typeChanged, "reads", "read")} back from ${ORIGINAL_ID_KEY} as the other type under ids: "canonical" (a string "1" becomes 1, a number 1.5 becomes "1.5")`, null, typeChanged));
     }
 }
 /**
@@ -722,10 +738,11 @@ function* writeLines(snapshot, edgePlan) {
 }
 /**
  * Resolve the Pajek export options.
+ * @param snapshot - the graph, whose name is the default network name
  * @param options - the caller's options
  * @returns the resolved format options; the common options are checked by resolveExportOptions
  */
-function resolvePajekOptions(options) {
+function resolvePajekOptions(snapshot, options) {
     const common = resolveExportOptions(options);
     const value = options?.networkHeader;
     if (value !== undefined && typeof value !== "boolean") {
@@ -734,11 +751,26 @@ function resolvePajekOptions(options) {
             found: typeof value,
         });
     }
-    return { networkHeader: value ?? false, mangle: common.sanitizeIds === "mangle" };
+    const name = options?.name;
+    if (name !== undefined && (typeof name !== "string" || /[\r\n]/.test(name))) {
+        throw new GraphFormatError("E_UNSUPPORTED", "option name: not a one-line string", {
+            option: "name",
+            found: typeof name,
+        });
+    }
+    return {
+        networkHeader: value ?? name !== undefined,
+        name: name ?? snapshot.meta.name,
+        mangle: common.sanitizeIds === "mangle",
+    };
 }
-/** The Pajek NET exporter. */
+/**
+ * The Pajek NET exporter.
+ * @category Built-in formats
+ */
 export const pajekExporter = Object.freeze({
     format: "pajek",
+    options: Object.freeze(["name", "networkHeader"]),
     capabilities: CAPABILITIES,
     /**
      * Pre-flight: the generic capability gaps plus the Pajek-specific ones.
@@ -748,7 +780,7 @@ export const pajekExporter = Object.freeze({
      */
     check(snapshot, options) {
         const resolved = resolveExportOptions(options);
-        const { mangle } = resolvePajekOptions(options);
+        const { mangle } = resolvePajekOptions(snapshot, options);
         const notes = [];
         const planned = plan(snapshot.nodes, "node", notes);
         const nodePlan = withoutReservedKey(planned, mangle);
@@ -807,7 +839,7 @@ export const pajekExporter = Object.freeze({
         checkCells(edgePlan, "edge", notes);
         const folding = pairFolding(snapshot, { foldMutual: true });
         if (folding.mutualCount > 0) {
-            notes.push(note(PAJEK_LOSS.MUTUAL_AS_UNDIRECTED, `${folding.mutualCount} mutual pair(s) are written as undirected edges; the mutual mark is lost`, snapshot.edges.byRole("mutual")?.meta.name ?? null, folding.mutualCount));
+            notes.push(note(PAJEK_LOSS.MUTUAL_AS_UNDIRECTED, `${folding.mutualCount} mutual pair${plural(folding.mutualCount)} ${agree(folding.mutualCount, "is", "are")} written as undirected edges; the mutual mark is lost`, snapshot.edges.byRole("mutual")?.meta.name ?? null, folding.mutualCount));
         }
         if (Number.isNaN(firstModeOf(snapshot))) {
             notes.push(note(PAJEK_LOSS.FIRST_MODE_DROPPED, "meta.extra.pajek.firstMode is not a count within 0..nodeCount; the two-mode header is not written"));
@@ -821,7 +853,7 @@ export const pajekExporter = Object.freeze({
      * @returns the chunks
      */
     export(snapshot, options) {
-        const resolved = resolvePajekOptions(options);
+        const resolved = resolvePajekOptions(snapshot, options);
         return encodeChunks(writeParts(snapshot, resolved));
     },
     /**
@@ -831,7 +863,7 @@ export const pajekExporter = Object.freeze({
      * @returns the document
      */
     exportToString(snapshot, options) {
-        const resolved = resolvePajekOptions(options);
+        const resolved = resolvePajekOptions(snapshot, options);
         return joinText(writeParts(snapshot, resolved));
     },
 });

package/dist/src/formats/pajek/exporter.js.map

@@ -1 +1 @@
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package/dist/src/formats/pajek/importer.d.ts

@@ -15,38 +15,58 @@
  * `partition` (i32) and `vector` (f64), wherever they stand in the file; other project-file
  * sections (`*Events`, `*Permutation`, ...) are skipped with a warning.
  */
-import { type GraphImporter } from "../../types.js";
-/** The format-specific options of the Pajek importer. */
-export interface PajekImportOptions {
+import { type CommonImportOptions, type GraphChoiceOptions, type GraphImporter } from "../../types.js";
+/**
+ * The format-specific options of the Pajek importer.
+ * @category Built-in formats
+ */
+export interface PajekImportOptions extends GraphChoiceOptions, CommonImportOptions {
     /**
      * The number of the first vertex: 1 (Pajek's rule), 0 (files written by zero-based scripts), or
-     * "auto" (default): 0 when the first vertex line is numbered 0, 1 otherwise.
+     * "auto": 0 when the first vertex line is numbered 0, 1 otherwise.
+     * @defaultValue "auto"
      */
     firstVertex?: 0 | 1 | "auto" | undefined;
 }
-/** Issue codes of the Pajek importer. */
+/**
+ * Issue codes of the Pajek importer.
+ * @category Built-in formats
+ */
 export declare const PAJEK_ISSUE: Readonly<{
-    /** The input holds invalid UTF-8 (fatal). */
+    /** The input is not valid UTF-8. The import stops. */
     INVALID_UTF8: "E_INVALID_UTF8";
-    /** Invalid bytes in the encoding a BOM, a declaration or the encoding option chose (fatal). */
+    /**
+     * Some bytes are not valid in the encoding that was chosen (by a byte order mark, the file's declaration or the
+     * `encoding` option). The import stops.
+     */
     INVALID_ENCODING: "E_INVALID_ENCODING";
     /** Bytes that are not UTF-8 and declare no encoding were read as windows-1252. */
     ENCODING_FALLBACK: "W_ENCODING_FALLBACK";
     /** A declared encoding the platform cannot decode was ignored. */
     UNKNOWN_ENCODING: "W_UNKNOWN_ENCODING";
-    /** Fatal: no `*Vertices` section (an empty file, or not a Pajek network). */
+    /** There is no `*Vertices` section: the file is empty or not a Pajek network. The import stops. */
     NO_VERTICES: "E_PAJEK_NO_VERTICES";
-    /** Fatal: `*Vertices` without a vertex count, one the sink cannot hold, or a first-mode count outside 0..N. */
+    /**
+     * `*Vertices` without a vertex count, with a count too large to hold, or with a first-mode count outside 0 to N;
+     * the import stops.
+     */
     VERTICES_COUNT: "E_PAJEK_VERTICES_COUNT";
-    /** A project file holds several networks; import() reads the first, importAll() reads every one. */
+    /**
+     * The file holds several graphs and only the first was read. It is not added when `graphIndex` or `graphName` chose the graph.
+     * `importAllGraphs()` reads every one.
+     */
     MULTIPLE_GRAPHS: "W_MULTIPLE_GRAPHS";
+    /** `graphIndex` or `graphName` names no graph of the file; the message lists the graphs it holds. The import stops. */
+    GRAPH_NOT_FOUND: "E_GRAPH_NOT_FOUND";
+    /** `graphName` matches more than one graph; pass `graphIndex`. The import stops. */
+    AMBIGUOUS_GRAPH_NAME: "E_AMBIGUOUS_GRAPH_NAME";
     /** A data line before the first section header. */
     OUTSIDE_SECTION: "E_PAJEK_OUTSIDE_SECTION";
     /** A section header the importer cannot parse. */
     SYNTAX: "E_SYNTAX";
     /** A double quote not closed before the end of the line. */
     UNTERMINATED_QUOTE: "E_PAJEK_UNTERMINATED_QUOTE";
-    /** A vertex line the grammar does not accept. */
+    /** A vertex line that is not in Pajek's vertex syntax; the vertex is skipped. */
     VERTEX_LINE: "E_PAJEK_VERTEX_LINE";
     /** A vertex number outside the declared range. */
     VERTEX_RANGE: "E_PAJEK_VERTEX_RANGE";
@@ -54,9 +74,12 @@ export declare const PAJEK_ISSUE: Readonly<{
     VERTEX_COUNT: "W_PAJEK_VERTEX_COUNT";
     /** A second line for the same vertex; the later values overwrite. */
     DUPLICATE_NODE: "W_DUPLICATE_NODE";
-    /** A line (arc, edge, list, matrix row, partition or vector value) the grammar does not accept. */
+    /**
+     * A line that is not in Pajek's syntax for its section (an arc, edge, list, matrix row, partition or vector
+     * value); it is skipped.
+     */
     LINE: "E_PAJEK_LINE";
-    /** A line endpoint outside the declared vertex range (the core's code, forwarded). */
+    /** An edge names a vertex number outside the range `*Vertices` declared; the edge is skipped. */
     UNKNOWN_NODE: "E_UNKNOWN_NODE";
     /** A malformed time interval token. */
     INTERVAL: "E_PAJEK_INTERVAL";
@@ -68,33 +91,72 @@ export declare const PAJEK_ISSUE: Readonly<{
     OBJECT_COUNT: "E_PAJEK_OBJECT_COUNT";
     /** A project-file section (`*Events`, `*Permutation`, ...) the importer does not read; its lines are skipped. */
     UNSUPPORTED_SECTION: "W_PAJEK_UNSUPPORTED_SECTION";
-    /** Tokens after a section header the grammar does not account for. */
+    /** A section header has extra words Pajek does not define; they are ignored. */
     HEADER_EXTRA: "W_PAJEK_HEADER_EXTRA";
     /** The file declares vertices but no line section. */
     NO_LINES: "W_PAJEK_NO_LINES";
-    /** Vertex numbering starts at 0 rather than 1. */
+    /** Vertex numbering starts at 0 rather than 1, found by `firstVertex: "auto"` (passing `firstVertex: 0` says so and gives no warning). */
     ZERO_BASED: "W_PAJEK_ZERO_BASED";
     /** Vertex lines mix two and three coordinates. */
     COORD_DIMS: "W_PAJEK_COORD_DIMS";
     /** Two vertices share a label under nodeIdFrom "label" and became one node. */
     LABEL_MERGED: "W_PAJEK_LABEL_MERGED";
-    /** Two distinct label texts became one numeric id under ids "number". */
+    /** Two different labels became the same number because `ids` is "number", so their vertices were merged. */
     ID_MERGED: "W_ID_MERGED";
-    /** A parameter column of `2.0`-style text kept at the value-inferred dtype (the sink cannot widen). */
+    /**
+     * Your graph builder cannot change an attribute's type after its first value, so a text column keeps the type of
+     * its first values.
+     */
     WIDENING_UNSUPPORTED: "W_WIDENING_UNSUPPORTED";
-    /** A structural column (label, position, shape, spells, relation) renamed `<name>#<id>` because the name was taken (design section 5.6). */
+    /** A structural column (label, position, shape, spells, relation) renamed `<name>#<id>` because the name was taken. */
     COLUMN_RENAMED: "W_COLUMN_RENAMED";
-    /** A structural column declared without its role because the sink already holds it. */
+    /**
+     * You read into a graph builder that already has an id, label or position attribute, so this file's one is kept as
+     * a plain attribute.
+     */
     ROLE_TAKEN: "W_ROLE_TAKEN";
     /** Two vertices carry the same `graphty_originalId` under restoreMangledIds and became one node. */
     ORIGINAL_ID_MERGED: "W_PAJEK_ORIGINAL_ID_MERGED";
     /** A vertex line's `graphty_originalId` came after a later vertex's line had created it under its number. */
     ORIGINAL_ID_UNRESTORED: "W_PAJEK_ORIGINAL_ID_UNRESTORED";
-    /** A common option the importer has no use for (weightFrom naming a parameter and restoreMangledIds are honoured; long, hyperedges are not). */
+    /** You set an option this format does not use; it had no effect. The message names the option. */
     OPTION_IGNORED: "W_OPTION_IGNORED";
-    /** A builder-policy option the caller passed that the caller's sink does not use (the shared W_SINK_OPTION). */
+    /**
+     * You read into your own graph builder, which was created with a different `addMissingNodes`, `duplicateEdges`,
+     * `selfLoops` or `weightDtype` than the option you passed; the builder's setting applies.
+     */
     SINK_OPTION: "W_SINK_OPTION";
+    /** A double quote inside a token (a CSV-style doubled quote, a quote mid-word): removed and the parts joined. */
+    QUOTE_IN_TOKEN: "W_PAJEK_QUOTE_IN_TOKEN";
+    /** The same parameter twice on one line; the later value stands. */
+    DUPLICATE_ATTRIBUTE: "W_DUPLICATE_ATTRIBUTE";
+    /** A character reference beyond U+10FFFF in a label; kept as written. */
+    REFERENCE_RANGE: "W_PAJEK_REFERENCE_RANGE";
+    /** A line of a two-mode network whose endpoints are both in one mode. */
+    TWO_MODE_LINE: "W_PAJEK_TWO_MODE_LINE";
+    /** A bare non-integer number read as a vertex label before two coordinates (`1 0.1 0.2 0.3`); it may be an x y z line without a label. */
+    NUMERIC_LABEL: "W_PAJEK_NUMERIC_LABEL";
+    /** A relation number given a second name by a later `*Arcs :k "name"` header. */
+    RELATION_RENAMED: "W_PAJEK_RELATION_RENAMED";
+    /** A negative vertex number in an adjacency list, read as its absolute value. */
+    NEGATIVE_LIST_ENTRY: "W_PAJEK_NEGATIVE_LIST_ENTRY";
+    /** An integer beyond 2^53 was stored as the nearest 64-bit float; pass `long: "string"` to keep every digit. */
+    PRECISION: "W_PRECISION";
+    INVALID_ID: "E_INVALID_ID";
+    INVALID_WEIGHT: "E_INVALID_WEIGHT";
+    DUPLICATE_EDGE: "E_DUPLICATE_EDGE";
+    SELF_LOOP: "E_SELF_LOOP";
+    DUPLICATE_EDGE_ID: "E_DUPLICATE_EDGE_ID";
+    EMPTY_INPUT: "E_EMPTY_INPUT";
+    TOO_LARGE: "E_TOO_LARGE";
+    ENCODING_CONFLICT: "W_ENCODING_CONFLICT";
+    CONTROL_CHARACTER: "W_CONTROL_CHARACTER";
+    FOREIGN_FORMAT: "E_FOREIGN_FORMAT";
+    ISSUES_SUPPRESSED: "W_ISSUES_SUPPRESSED";
 }>;
-/** The Pajek NET importer. */
+/**
+ * The Pajek NET importer.
+ * @category Built-in formats
+ */
 export declare const pajekImporter: GraphImporter<PajekImportOptions>;
 //# sourceMappingURL=importer.d.ts.map

package/dist/src/formats/pajek/importer.d.ts.map

@@ -1 +1 @@
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