@graphty/graph-io 0.3.25 → 0.3.26
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +49 -414
- package/dist/chunks/children-CL3Cy0ez.js.map +1 -1
- package/dist/chunks/choose-BbJI55dx.js +56 -0
- package/dist/chunks/choose-BbJI55dx.js.map +1 -0
- package/dist/chunks/constants-BCsFsMj4.js +231 -0
- package/dist/chunks/constants-BCsFsMj4.js.map +1 -0
- package/dist/chunks/{escape-B-tkk_Cl.js → escape-D0g6NNUy.js} +382 -92
- package/dist/chunks/escape-D0g6NNUy.js.map +1 -0
- package/dist/chunks/export-BTI4yQgy.js +4333 -0
- package/dist/chunks/export-BTI4yQgy.js.map +1 -0
- package/dist/chunks/exporter-BMqk5oxW.js +3465 -0
- package/dist/chunks/exporter-BMqk5oxW.js.map +1 -0
- package/dist/chunks/{importer-eUREhBGj.js → exporter-Cra2GYcN.js} +4969 -3201
- package/dist/chunks/exporter-Cra2GYcN.js.map +1 -0
- package/dist/chunks/{exporter-BGrsWamJ.js → exporter-Dxh231ZF.js} +38 -229
- package/dist/chunks/exporter-Dxh231ZF.js.map +1 -0
- package/dist/chunks/{exporter-DIeGJXAZ.js → exporter-tne475KK.js} +22 -20
- package/dist/chunks/exporter-tne475KK.js.map +1 -0
- package/dist/chunks/importer-90YWhJoF.js +2811 -0
- package/dist/chunks/importer-90YWhJoF.js.map +1 -0
- package/dist/chunks/{importer-D_e7e7LX.js → importer-Bcl1d4xH.js} +398 -145
- package/dist/chunks/importer-Bcl1d4xH.js.map +1 -0
- package/dist/chunks/{importer-BWY2FFc5.js → importer-BfIsp1f9.js} +255 -77
- package/dist/chunks/importer-BfIsp1f9.js.map +1 -0
- package/dist/chunks/{importer-zGLo8Dg_.js → importer-C_TEA1zJ.js} +484 -157
- package/dist/chunks/importer-C_TEA1zJ.js.map +1 -0
- package/dist/chunks/{importer-DET1tg6s.js → importer-DCjOvO7U.js} +1687 -310
- package/dist/chunks/importer-DCjOvO7U.js.map +1 -0
- package/dist/chunks/{importer-vi3bSdtw.js → importer-DfVu6j59.js} +509 -76
- package/dist/chunks/importer-DfVu6j59.js.map +1 -0
- package/dist/chunks/{importer-DIrbbnAf.js → importer-Dku_VAIY.js} +585 -226
- package/dist/chunks/importer-Dku_VAIY.js.map +1 -0
- package/dist/chunks/json-elements-3tnyt5uZ.js +1225 -0
- package/dist/chunks/json-elements-3tnyt5uZ.js.map +1 -0
- package/dist/chunks/ontology-export-B9Tcf37D.js +357 -0
- package/dist/chunks/ontology-export-B9Tcf37D.js.map +1 -0
- package/dist/chunks/{records-dbRkxwaq.js → records-CQXT__mY.js} +298 -114
- package/dist/chunks/records-CQXT__mY.js.map +1 -0
- package/dist/chunks/{text-Dr0Ifpag.js → text-DmcUs5_Q.js} +29 -11
- package/dist/chunks/text-DmcUs5_Q.js.map +1 -0
- package/dist/chunks/{writer-C7flM-Ih.js → writer-DxjgHwSe.js} +19 -1
- package/dist/chunks/writer-DxjgHwSe.js.map +1 -0
- package/dist/csv.js +951 -261
- package/dist/csv.js.map +1 -1
- package/dist/cx.js +6 -3
- package/dist/cx2.js +2 -2
- package/dist/cys.js +6 -3
- package/dist/dot.js +1 -1
- package/dist/gexf.js +554 -122
- package/dist/gexf.js.map +1 -1
- package/dist/gml.js +342 -85
- package/dist/gml.js.map +1 -1
- package/dist/graph-io.js +1105 -213
- package/dist/graph-io.js.map +1 -1
- package/dist/graphml.js +3 -2
- package/dist/graphml.js.map +1 -1
- package/dist/json.js +3 -2
- package/dist/neo4j.js +564 -157
- package/dist/neo4j.js.map +1 -1
- package/dist/obo.js +6 -3
- package/dist/pajek.js +1 -1
- package/dist/src/children.d.ts +18 -6
- package/dist/src/children.d.ts.map +1 -1
- package/dist/src/children.js +6 -3
- package/dist/src/children.js.map +1 -1
- package/dist/src/common/attributes.d.ts +29 -11
- package/dist/src/common/attributes.d.ts.map +1 -1
- package/dist/src/common/attributes.js +25 -7
- package/dist/src/common/attributes.js.map +1 -1
- package/dist/src/common/cell-budget.d.ts +9 -2
- package/dist/src/common/cell-budget.d.ts.map +1 -1
- package/dist/src/common/cell-budget.js +11 -3
- package/dist/src/common/cell-budget.js.map +1 -1
- package/dist/src/common/choose.d.ts +19 -0
- package/dist/src/common/choose.d.ts.map +1 -0
- package/dist/src/common/choose.js +72 -0
- package/dist/src/common/choose.js.map +1 -0
- package/dist/src/common/codes.d.ts +456 -66
- package/dist/src/common/codes.d.ts.map +1 -1
- package/dist/src/common/codes.js +458 -66
- package/dist/src/common/codes.js.map +1 -1
- package/dist/src/common/compare.d.ts +81 -0
- package/dist/src/common/compare.d.ts.map +1 -0
- package/dist/src/common/compare.js +394 -0
- package/dist/src/common/compare.js.map +1 -0
- package/dist/src/common/cx-export.d.ts +123 -0
- package/dist/src/common/cx-export.d.ts.map +1 -0
- package/dist/src/common/cx-export.js +334 -0
- package/dist/src/common/cx-export.js.map +1 -0
- package/dist/src/common/declared-types.d.ts +22 -2
- package/dist/src/common/declared-types.d.ts.map +1 -1
- package/dist/src/common/declared-types.js +19 -1
- package/dist/src/common/declared-types.js.map +1 -1
- package/dist/src/common/direction.d.ts +74 -50
- package/dist/src/common/direction.d.ts.map +1 -1
- package/dist/src/common/direction.js +47 -27
- package/dist/src/common/direction.js.map +1 -1
- package/dist/src/common/escape.d.ts +21 -9
- package/dist/src/common/escape.d.ts.map +1 -1
- package/dist/src/common/escape.js +33 -17
- package/dist/src/common/escape.js.map +1 -1
- package/dist/src/common/export.d.ts +144 -32
- package/dist/src/common/export.d.ts.map +1 -1
- package/dist/src/common/export.js +216 -42
- package/dist/src/common/export.js.map +1 -1
- package/dist/src/common/format.d.ts +23 -1
- package/dist/src/common/format.d.ts.map +1 -1
- package/dist/src/common/format.js +26 -1
- package/dist/src/common/format.js.map +1 -1
- package/dist/src/common/ids.d.ts +9 -2
- package/dist/src/common/ids.d.ts.map +1 -1
- package/dist/src/common/ids.js +6 -2
- package/dist/src/common/ids.js.map +1 -1
- package/dist/src/common/input.d.ts +122 -28
- package/dist/src/common/input.d.ts.map +1 -1
- package/dist/src/common/input.js +890 -124
- package/dist/src/common/input.js.map +1 -1
- package/dist/src/common/json-elements.d.ts +144 -20
- package/dist/src/common/json-elements.d.ts.map +1 -1
- package/dist/src/common/json-elements.js +868 -188
- package/dist/src/common/json-elements.js.map +1 -1
- package/dist/src/common/line-format.d.ts +90 -0
- package/dist/src/common/line-format.d.ts.map +1 -0
- package/dist/src/common/line-format.js +185 -0
- package/dist/src/common/line-format.js.map +1 -0
- package/dist/src/common/lists.d.ts +6 -1
- package/dist/src/common/lists.d.ts.map +1 -1
- package/dist/src/common/lists.js +2 -0
- package/dist/src/common/lists.js.map +1 -1
- package/dist/src/common/ontology-export.d.ts +167 -0
- package/dist/src/common/ontology-export.d.ts.map +1 -0
- package/dist/src/common/ontology-export.js +359 -0
- package/dist/src/common/ontology-export.js.map +1 -0
- package/dist/src/common/ontology.d.ts +25 -3
- package/dist/src/common/ontology.d.ts.map +1 -1
- package/dist/src/common/ontology.js +30 -9
- package/dist/src/common/ontology.js.map +1 -1
- package/dist/src/common/options.d.ts +62 -12
- package/dist/src/common/options.d.ts.map +1 -1
- package/dist/src/common/options.js +89 -11
- package/dist/src/common/options.js.map +1 -1
- package/dist/src/common/plural.d.ts +31 -0
- package/dist/src/common/plural.d.ts.map +1 -0
- package/dist/src/common/plural.js +46 -0
- package/dist/src/common/plural.js.map +1 -0
- package/dist/src/common/report.d.ts +72 -14
- package/dist/src/common/report.d.ts.map +1 -1
- package/dist/src/common/report.js +146 -22
- package/dist/src/common/report.js.map +1 -1
- package/dist/src/common/temporal.d.ts +22 -5
- package/dist/src/common/temporal.d.ts.map +1 -1
- package/dist/src/common/temporal.js +13 -2
- package/dist/src/common/temporal.js.map +1 -1
- package/dist/src/common/text.d.ts +39 -23
- package/dist/src/common/text.d.ts.map +1 -1
- package/dist/src/common/text.js +51 -21
- package/dist/src/common/text.js.map +1 -1
- package/dist/src/common/weights.d.ts +37 -4
- package/dist/src/common/weights.d.ts.map +1 -1
- package/dist/src/common/weights.js +61 -2
- package/dist/src/common/weights.js.map +1 -1
- package/dist/src/common/writer.d.ts +19 -3
- package/dist/src/common/writer.d.ts.map +1 -1
- package/dist/src/common/writer.js +30 -2
- package/dist/src/common/writer.js.map +1 -1
- package/dist/src/common/xml.d.ts +125 -9
- package/dist/src/common/xml.d.ts.map +1 -1
- package/dist/src/common/xml.js +400 -83
- package/dist/src/common/xml.js.map +1 -1
- package/dist/src/common/zip.d.ts +44 -4
- package/dist/src/common/zip.d.ts.map +1 -1
- package/dist/src/common/zip.js +134 -5
- package/dist/src/common/zip.js.map +1 -1
- package/dist/src/formats/csv/exporter.d.ts +80 -24
- package/dist/src/formats/csv/exporter.d.ts.map +1 -1
- package/dist/src/formats/csv/exporter.js +145 -32
- package/dist/src/formats/csv/exporter.js.map +1 -1
- package/dist/src/formats/csv/header.d.ts +38 -9
- package/dist/src/formats/csv/header.d.ts.map +1 -1
- package/dist/src/formats/csv/header.js +46 -10
- package/dist/src/formats/csv/header.js.map +1 -1
- package/dist/src/formats/csv/importer.d.ts +187 -37
- package/dist/src/formats/csv/importer.d.ts.map +1 -1
- package/dist/src/formats/csv/importer.js +835 -204
- package/dist/src/formats/csv/importer.js.map +1 -1
- package/dist/src/formats/csv/index.d.ts +100 -19
- package/dist/src/formats/csv/index.d.ts.map +1 -1
- package/dist/src/formats/csv/index.js +94 -21
- package/dist/src/formats/csv/index.js.map +1 -1
- package/dist/src/formats/csv/records.d.ts +95 -10
- package/dist/src/formats/csv/records.d.ts.map +1 -1
- package/dist/src/formats/csv/records.js +333 -122
- package/dist/src/formats/csv/records.js.map +1 -1
- package/dist/src/formats/csv/values.d.ts +1 -0
- package/dist/src/formats/csv/values.d.ts.map +1 -1
- package/dist/src/formats/csv/values.js +1 -0
- package/dist/src/formats/csv/values.js.map +1 -1
- package/dist/src/formats/cx/exporter.d.ts +102 -0
- package/dist/src/formats/cx/exporter.d.ts.map +1 -0
- package/dist/src/formats/cx/exporter.js +1217 -0
- package/dist/src/formats/cx/exporter.js.map +1 -0
- package/dist/src/formats/cx/importer.d.ts +79 -32
- package/dist/src/formats/cx/importer.d.ts.map +1 -1
- package/dist/src/formats/cx/importer.js +680 -285
- package/dist/src/formats/cx/importer.js.map +1 -1
- package/dist/src/formats/cx/index.d.ts +4 -3
- package/dist/src/formats/cx/index.d.ts.map +1 -1
- package/dist/src/formats/cx/index.js +4 -3
- package/dist/src/formats/cx/index.js.map +1 -1
- package/dist/src/formats/cx2/exporter.d.ts +29 -11
- package/dist/src/formats/cx2/exporter.d.ts.map +1 -1
- package/dist/src/formats/cx2/exporter.js +39 -268
- package/dist/src/formats/cx2/exporter.js.map +1 -1
- package/dist/src/formats/cx2/importer.d.ts +78 -28
- package/dist/src/formats/cx2/importer.d.ts.map +1 -1
- package/dist/src/formats/cx2/importer.js +226 -79
- package/dist/src/formats/cx2/importer.js.map +1 -1
- package/dist/src/formats/cx2/index.d.ts +2 -1
- package/dist/src/formats/cx2/index.d.ts.map +1 -1
- package/dist/src/formats/cx2/index.js +2 -1
- package/dist/src/formats/cx2/index.js.map +1 -1
- package/dist/src/formats/cys/constants.d.ts +66 -17
- package/dist/src/formats/cys/constants.d.ts.map +1 -1
- package/dist/src/formats/cys/constants.js +59 -18
- package/dist/src/formats/cys/constants.js.map +1 -1
- package/dist/src/formats/cys/exporter.d.ts +118 -0
- package/dist/src/formats/cys/exporter.d.ts.map +1 -0
- package/dist/src/formats/cys/exporter.js +1072 -0
- package/dist/src/formats/cys/exporter.js.map +1 -0
- package/dist/src/formats/cys/importer.d.ts +22 -8
- package/dist/src/formats/cys/importer.d.ts.map +1 -1
- package/dist/src/formats/cys/importer.js +510 -149
- package/dist/src/formats/cys/importer.js.map +1 -1
- package/dist/src/formats/cys/index.d.ts +4 -2
- package/dist/src/formats/cys/index.d.ts.map +1 -1
- package/dist/src/formats/cys/index.js +4 -2
- package/dist/src/formats/cys/index.js.map +1 -1
- package/dist/src/formats/cys/session.d.ts +46 -7
- package/dist/src/formats/cys/session.d.ts.map +1 -1
- package/dist/src/formats/cys/session.js +98 -24
- package/dist/src/formats/cys/session.js.map +1 -1
- package/dist/src/formats/cys/tables.d.ts +9 -2
- package/dist/src/formats/cys/tables.d.ts.map +1 -1
- package/dist/src/formats/cys/tables.js +29 -7
- package/dist/src/formats/cys/tables.js.map +1 -1
- package/dist/src/formats/dot/exporter.d.ts +42 -14
- package/dist/src/formats/dot/exporter.d.ts.map +1 -1
- package/dist/src/formats/dot/exporter.js +56 -29
- package/dist/src/formats/dot/exporter.js.map +1 -1
- package/dist/src/formats/dot/importer.d.ts +91 -29
- package/dist/src/formats/dot/importer.d.ts.map +1 -1
- package/dist/src/formats/dot/importer.js +190 -39
- package/dist/src/formats/dot/importer.js.map +1 -1
- package/dist/src/formats/dot/index.d.ts +2 -1
- package/dist/src/formats/dot/index.d.ts.map +1 -1
- package/dist/src/formats/dot/index.js +2 -1
- package/dist/src/formats/dot/index.js.map +1 -1
- package/dist/src/formats/dot/names.d.ts +44 -11
- package/dist/src/formats/dot/names.d.ts.map +1 -1
- package/dist/src/formats/dot/names.js +44 -11
- package/dist/src/formats/dot/names.js.map +1 -1
- package/dist/src/formats/dot/tokenizer.d.ts +9 -2
- package/dist/src/formats/dot/tokenizer.d.ts.map +1 -1
- package/dist/src/formats/dot/tokenizer.js +20 -5
- package/dist/src/formats/dot/tokenizer.js.map +1 -1
- package/dist/src/formats/gexf/exporter.d.ts +46 -15
- package/dist/src/formats/gexf/exporter.d.ts.map +1 -1
- package/dist/src/formats/gexf/exporter.js +45 -15
- package/dist/src/formats/gexf/exporter.js.map +1 -1
- package/dist/src/formats/gexf/importer.d.ts +87 -23
- package/dist/src/formats/gexf/importer.d.ts.map +1 -1
- package/dist/src/formats/gexf/importer.js +471 -90
- package/dist/src/formats/gexf/importer.js.map +1 -1
- package/dist/src/formats/gexf/index.d.ts +84 -21
- package/dist/src/formats/gexf/index.d.ts.map +1 -1
- package/dist/src/formats/gexf/index.js +80 -23
- package/dist/src/formats/gexf/index.js.map +1 -1
- package/dist/src/formats/gexf/schema.d.ts +67 -15
- package/dist/src/formats/gexf/schema.d.ts.map +1 -1
- package/dist/src/formats/gexf/schema.js +59 -13
- package/dist/src/formats/gexf/schema.js.map +1 -1
- package/dist/src/formats/gml/exporter.d.ts +69 -21
- package/dist/src/formats/gml/exporter.d.ts.map +1 -1
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- package/dist/src/formats/gml/index.d.ts +87 -24
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- package/dist/src/formats/gml/index.js +79 -26
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- package/dist/src/formats/gml/syntax.d.ts +67 -18
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- package/dist/src/formats/graphml/constants.d.ts +174 -44
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- package/dist/src/formats/graphml/tree.d.ts +6 -2
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- package/dist/src/formats/graphml/yfiles.d.ts +8 -3
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- package/dist/src/formats/graphml/yfiles.js +36 -15
- package/dist/src/formats/graphml/yfiles.js.map +1 -1
- package/dist/src/formats/json/dialect.d.ts +88 -24
- package/dist/src/formats/json/dialect.d.ts.map +1 -1
- package/dist/src/formats/json/dialect.js +109 -19
- package/dist/src/formats/json/dialect.js.map +1 -1
- package/dist/src/formats/json/exporter.d.ts +134 -22
- package/dist/src/formats/json/exporter.d.ts.map +1 -1
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- package/dist/src/formats/json/importer.d.ts +173 -52
- package/dist/src/formats/json/importer.d.ts.map +1 -1
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- package/dist/src/formats/json/importer.js.map +1 -1
- package/dist/src/formats/json/index.d.ts +3 -2
- package/dist/src/formats/json/index.d.ts.map +1 -1
- package/dist/src/formats/json/index.js +3 -2
- package/dist/src/formats/json/index.js.map +1 -1
- package/dist/src/formats/json/obographs-export.d.ts +68 -0
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- package/dist/src/formats/json/obographs.d.ts +26 -0
- package/dist/src/formats/json/obographs.d.ts.map +1 -1
- package/dist/src/formats/json/obographs.js +297 -80
- package/dist/src/formats/json/obographs.js.map +1 -1
- package/dist/src/formats/neo4j/exporter.d.ts +109 -21
- package/dist/src/formats/neo4j/exporter.d.ts.map +1 -1
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* The `origin.namespace` of the columns that hold Cytoscape-only data (z, nested networks).
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* @category Plugin helpers
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*/
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export declare const CYTOSCAPE_ORIGIN_NAMESPACE = "cytoscape";
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/**
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* The issue codes the XGMML importer records
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* The issue codes the XGMML importer records, by name: the codes shared with
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* the other importers and the XGMML-specific ones. A key is the code without
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* its severity and format prefixes.
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* @category Built-in formats
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*/
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export declare const XGMML_ISSUE: Readonly<{
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/**
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/** The input is not well-formed XML. The import stops. */
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XML_SYNTAX: "E_XML_SYNTAX";
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/**
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/** The input is empty or whitespace only. The import stops. */
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EMPTY_INPUT: "E_EMPTY_INPUT";
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/**
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/** The input is not valid UTF-8. The import stops. */
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INVALID_UTF8: "E_INVALID_UTF8";
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/**
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/**
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* Some bytes are not valid in the encoding that was chosen (by a byte order mark, the file's declaration or the
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* `encoding` option). The import stops.
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*/
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INVALID_ENCODING: "E_INVALID_ENCODING";
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/** Undeclared non-UTF-8 bytes were read as windows-1252. */
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ENCODING_FALLBACK: "W_ENCODING_FALLBACK";
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/** A declared encoding the platform cannot decode was ignored. */
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UNKNOWN_ENCODING: "W_UNKNOWN_ENCODING";
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/**
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/** A declared encoding the byte order mark contradicts (the mark wins). */
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ENCODING_CONFLICT: "W_ENCODING_CONFLICT";
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/**
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* The root element is not `<graph>` (it may be an XHTML page with a graph inside, or a GraphML file). The import
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* stops.
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*/
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NO_GRAPH: "E_NO_GRAPH";
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/**
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/**
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* The file is a Cytoscape session view (`cy:view="1"`), which holds only view settings and no nodes or edges. The
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* import stops.
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*/
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VIEW_DOCUMENT: "E_XGMML_VIEW_DOCUMENT";
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/** A node with neither an id nor a label; it is skipped with its subtree. */
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MISSING_ID: "E_MISSING_ID";
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/** A node without an id; its label is used as the id. */
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ID_FROM_LABEL: "W_XGMML_ID_FROM_LABEL";
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/** A node or edge with both an id and an `xlink:href`; it is read as the reference. */
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ID_AND_HREF: "W_XGMML_ID_AND_HREF";
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/** An edge without a source or a target that no label alias resolves. */
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MISSING_ENDPOINT: "E_MISSING_ENDPOINT";
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/** An edge endpoint that names no node (addMissingNodes false); the edge is skipped. */
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DUPLICATE_NODE: "W_DUPLICATE_NODE";
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/** An edge id used twice; the second edge is skipped. */
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DUPLICATE_EDGE_ID: "E_DUPLICATE_EDGE_ID";
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/**
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/**
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* Cytoscape 2.x writes each edge of a group a second time, inside the group. The repeats are dropped, so every edge
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* is read once; nothing is lost.
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*/
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GROUP_DUPLICATE_EDGE: "W_XGMML_GROUP_DUPLICATE_EDGE";
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/** A `directed` or `cy:directed` value other than 0 / 1. */
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BAD_DIRECTED: "W_XGMML_BAD_DIRECTED";
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@@ -97,19 +176,28 @@ export declare const XGMML_ISSUE: Readonly<{
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SURROGATE_PAIRED: "W_XGMML_SURROGATE_PAIRED";
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/** An empty list whose element type nothing states; a list of strings is assumed. */
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EMPTY_LIST_TYPE: "W_XGMML_EMPTY_LIST_TYPE";
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/**
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/**
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* An attribute holds a structure a single column cannot (a list of records, a list of lists, a Cytoscape 2.x map
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* or XML from another tool). Its value is kept as a JSON value, which a save as XGMML writes back.
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*/
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RECORD_LIST: "W_XGMML_RECORD_LIST";
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/** A pointer into another file (`file.xgmml#id`); kept as text. */
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|
CROSS_FILE_REFERENCE: "W_XGMML_CROSS_FILE_REFERENCE";
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/** A graph nested in an edge's att; there is no model for it. */
|
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|
EDGE_NESTED_GRAPH: "W_XGMML_EDGE_NESTED_GRAPH";
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/**
|
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/**
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* Some nodes or edges of a Cytoscape session belong to none of its networks (Cytoscape keeps group meta-edges and
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* the members of collapsed groups this way). They are not read; the message counts them.
|
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*/
|
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|
ROOT_ONLY_ELEMENTS: "W_XGMML_ROOT_ONLY_ELEMENTS";
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/** A value that does not parse as its declared type; the cell is unset. */
|
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BAD_VALUE: "E_BAD_VALUE";
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/**
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/**
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* An attribute's type was widened because a later value did not fit: an integer above 2^31 in an integer column,
|
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* or two declared types for one attribute.
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*/
|
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|
WIDENED: "W_WIDENED";
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|
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/**
|
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/** An integer beyond 2^53 was stored as the nearest 64-bit float; pass `long: "string"` to keep every digit. */
|
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|
PRECISION: "W_PRECISION";
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|
/** A reference (xlink:href, nested-network pointer) that names nothing. */
|
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|
DANGLING_REFERENCE: "W_DANGLING_REFERENCE";
|
|
@@ -127,54 +215,87 @@ export declare const XGMML_ISSUE: Readonly<{
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UNKNOWN_ELEMENT: "W_UNKNOWN_ELEMENT";
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|
/** Character data where XGMML allows only elements, or inside an att. */
|
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|
STRAY_TEXT: "W_STRAY_TEXT";
|
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/**
|
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|
+
/**
|
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|
+
* The file holds several graphs and only the first was read. It is not added when `graphIndex` or `graphName` chose the graph.
|
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+
* `importAllGraphs()` reads every one.
|
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*/
|
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|
MULTIPLE_GRAPHS: "W_MULTIPLE_GRAPHS";
|
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|
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/** graphIndex
|
|
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|
+
/** `graphIndex` or `graphName` matches no network in the session. The import stops. */
|
|
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|
GRAPH_NOT_FOUND: "E_GRAPH_NOT_FOUND";
|
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|
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/** graphName
|
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|
+
/** `graphName` matches several networks in the session. The import stops. */
|
|
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|
AMBIGUOUS_GRAPH_NAME: "E_AMBIGUOUS_GRAPH_NAME";
|
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|
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/**
|
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|
+
/**
|
|
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|
+
* An attribute was renamed `<name>#<suffix>` because another attribute already has its name, for example
|
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|
+
* two attributes declared with the same name.
|
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|
+
*/
|
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|
COLUMN_RENAMED: "W_COLUMN_RENAMED";
|
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|
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/**
|
|
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|
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/**
|
|
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|
+
* You read into a graph builder that already has an id, label or position attribute, so this file's one is kept as
|
|
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|
+
* a plain attribute.
|
|
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|
+
*/
|
|
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|
ROLE_TAKEN: "W_ROLE_TAKEN";
|
|
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|
-
/** Two id texts
|
|
237
|
+
/** Two different id texts became the same number because `ids` is "number", so their nodes were merged. */
|
|
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238
|
ID_MERGED: "W_ID_MERGED";
|
|
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|
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/**
|
|
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|
+
/** You set an option this format does not use; it had no effect. The message names the option. */
|
|
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240
|
OPTION_IGNORED: "W_OPTION_IGNORED";
|
|
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|
-
/**
|
|
241
|
+
/**
|
|
242
|
+
* You read into your own graph builder, which was created with a different `addMissingNodes`, `duplicateEdges`,
|
|
243
|
+
* `selfLoops` or `weightDtype` than the option you passed; the builder's setting applies.
|
|
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|
+
*/
|
|
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245
|
SINK_OPTION: "W_SINK_OPTION";
|
|
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|
-
/**
|
|
246
|
+
/**
|
|
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|
+
* You read into a graph builder whose direction is already set, or which already holds edges, so the file is read
|
|
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|
+
* with the builder's direction instead of its own.
|
|
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|
+
*/
|
|
147
250
|
DIRECTION_REFUSED: "W_DIRECTION_REFUSED";
|
|
148
|
-
/** Edges
|
|
251
|
+
/** Edges of the other direction were read with the direction `onMixedDirection` chose. */
|
|
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|
DIRECTION_FORCED: "W_DIRECTION_FORCED";
|
|
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|
-
/**
|
|
253
|
+
/**
|
|
254
|
+
* The graph has both directed and undirected edges and `onMixedDirection` is "error". An import stops; a save to a
|
|
255
|
+
* format that holds one direction per file fails with E_DIRECTED. Pass "directed" or "undirected" to read or write
|
|
256
|
+
* it anyway.
|
|
257
|
+
*/
|
|
151
258
|
MIXED_DIRECTION: "E_MIXED_DIRECTION";
|
|
259
|
+
INVALID_ID: "E_INVALID_ID";
|
|
260
|
+
INVALID_WEIGHT: "E_INVALID_WEIGHT";
|
|
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|
+
DUPLICATE_EDGE: "E_DUPLICATE_EDGE";
|
|
262
|
+
SELF_LOOP: "E_SELF_LOOP";
|
|
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|
+
TOO_LARGE: "E_TOO_LARGE";
|
|
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|
+
CONTROL_CHARACTER: "W_CONTROL_CHARACTER";
|
|
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|
+
FOREIGN_FORMAT: "E_FOREIGN_FORMAT";
|
|
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|
+
ISSUES_SUPPRESSED: "W_ISSUES_SUPPRESSED";
|
|
152
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|
}>;
|
|
153
268
|
/**
|
|
154
269
|
* Loss note codes of the XGMML exporter (check()): the XGMML ones and the shared ones its notes
|
|
155
270
|
* can carry. The generic notes of `checkCapabilities()` (dtypes, components, temporal and visual
|
|
156
271
|
* roles, extension tables) are those of `LOSS`.
|
|
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|
+
* @category Built-in formats
|
|
157
273
|
*/
|
|
158
274
|
export declare const XGMML_LOSS: Readonly<{
|
|
159
275
|
/** A json or nested-list column written as a string att. */
|
|
160
276
|
JSON_AS_STRING: "W_XGMML_JSON_AS_STRING";
|
|
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|
-
/**
|
|
277
|
+
/**
|
|
278
|
+
* An attribute type Cytoscape does not have is written as a wider one (a 32-bit float as Double, a large unsigned
|
|
279
|
+
* integer as Long, a byte as Integer, a dictionary as String).
|
|
280
|
+
*/
|
|
162
281
|
WIDENED_TYPE: "W_XGMML_WIDENED_TYPE";
|
|
163
|
-
/** A
|
|
282
|
+
/** A text value holds a character XML 1.0 forbids (most control characters); the save fails with E_COLUMN_TYPE. */
|
|
164
283
|
XML_ILLEGAL_CHAR: "E_XML_ILLEGAL_CHAR";
|
|
165
284
|
/** A temporal column written as plain numbers. */
|
|
166
285
|
TEMPORAL_DROPPED: "W_TEMPORAL_DROPPED";
|
|
167
286
|
/** A temporal text companion written as a plain string att. */
|
|
168
287
|
TEMPORAL_TEXT_DROPPED: "W_TEMPORAL_TEXT_DROPPED";
|
|
169
|
-
/**
|
|
288
|
+
/** An attribute with a role the format has no place for is written as a plain attribute; the role is lost. */
|
|
170
289
|
ROLE_DROPPED: "W_ROLE_DROPPED";
|
|
171
|
-
/**
|
|
290
|
+
/**
|
|
291
|
+
* A `parents` attribute (several parents per node) is not written because the graph also has a `parent` attribute.
|
|
292
|
+
*/
|
|
172
293
|
PARENTS_DROPPED: "W_PARENTS_DROPPED";
|
|
173
294
|
/** A mutual pair written as two directed edges. */
|
|
174
295
|
MUTUAL_EXPANDED: "W_MUTUAL_EXPANDED";
|
|
175
296
|
/** Node ids whose text reads back as the other type. */
|
|
176
297
|
ID_TEXT_TYPE: "W_ID_TEXT_TYPE";
|
|
177
|
-
/**
|
|
298
|
+
/** Edge ids that are not text are written as text and read back as text. */
|
|
178
299
|
EDGE_ID_TEXT: "W_XGMML_EDGE_ID_TEXT";
|
|
179
300
|
/** Strings holding a literal backslash-n or backslash-t read back as newline / tab (Cytoscape's escapes). */
|
|
180
301
|
BACKSLASH_ESCAPE: "W_XGMML_BACKSLASH_ESCAPE";
|
|
@@ -182,13 +303,22 @@ export declare const XGMML_LOSS: Readonly<{
|
|
|
182
303
|
POSITION: "W_XGMML_POSITION";
|
|
183
304
|
/** Nodes whose parent chain never reaches a root are written at the top level. */
|
|
184
305
|
PARENT_CYCLE: "W_XGMML_PARENT_CYCLE";
|
|
185
|
-
/**
|
|
306
|
+
/**
|
|
307
|
+
* An attribute with a role (for example, the label) is written where the format keeps that role, and reads back under the
|
|
308
|
+
* name the format's importer gives it.
|
|
309
|
+
*/
|
|
186
310
|
COLUMN_NAME_CHANGED: "W_COLUMN_NAME_CHANGED";
|
|
187
|
-
/**
|
|
311
|
+
/**
|
|
312
|
+
* An attribute without a role is written where the format keeps a role (for example, a `name` column as the label), and
|
|
313
|
+
* reads back with that role.
|
|
314
|
+
*/
|
|
188
315
|
ROLE_ASSUMED: "W_ROLE_ASSUMED";
|
|
189
|
-
/**
|
|
316
|
+
/** An attribute named `weight` without the weight role reads back as the edge weight. */
|
|
190
317
|
WEIGHT_KEY_CLASH: "W_WEIGHT_KEY_CLASH";
|
|
191
|
-
/**
|
|
318
|
+
/**
|
|
319
|
+
* A text attribute reads back as a dictionary attribute, or the reverse, because the importer chooses by how often
|
|
320
|
+
* its values repeat. The values are the same.
|
|
321
|
+
*/
|
|
192
322
|
STORAGE_CLASS_CHANGED: "W_STORAGE_CLASS_CHANGED";
|
|
193
323
|
/** Edge labels shaped `a (i) b` read back with an `interaction` column (Cytoscape's label alias). */
|
|
194
324
|
INTERACTION_FROM_LABEL: "W_XGMML_INTERACTION_FROM_LABEL";
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"constants.d.ts","sourceRoot":"","sources":["../../../../src/formats/xgmml/constants.ts"],"names":[],"mappings":"AAAA
|
|
1
|
+
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