@graphty/graph-io 0.3.17 → 0.3.19

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Files changed (154) hide show
  1. package/LICENSE +1 -1
  2. package/README.md +64 -3
  3. package/dist/chunks/{escape-scjHxjpr.js → escape-CWExcecC.js} +3 -2
  4. package/dist/chunks/{escape-scjHxjpr.js.map → escape-CWExcecC.js.map} +1 -1
  5. package/dist/chunks/exporter-CbMZyVt-.js +735 -0
  6. package/dist/chunks/exporter-CbMZyVt-.js.map +1 -0
  7. package/dist/chunks/importer-BAP4PrxR.js +2194 -0
  8. package/dist/chunks/importer-BAP4PrxR.js.map +1 -0
  9. package/dist/chunks/{importer-Xg07gk7p.js → importer-BNFuV1-K.js} +5 -3
  10. package/dist/chunks/{importer-Xg07gk7p.js.map → importer-BNFuV1-K.js.map} +1 -1
  11. package/dist/chunks/{importer-BmOl9gLW.js → importer-BVGtU1NA.js} +5 -3
  12. package/dist/chunks/{importer-BmOl9gLW.js.map → importer-BVGtU1NA.js.map} +1 -1
  13. package/dist/chunks/{importer-ruMWWvVs.js → importer-BW-Ft2ps.js} +5 -3
  14. package/dist/chunks/{importer-ruMWWvVs.js.map → importer-BW-Ft2ps.js.map} +1 -1
  15. package/dist/chunks/{importer-B6rKRxzv.js → importer-Bm1_5vPS.js} +781 -104
  16. package/dist/chunks/importer-Bm1_5vPS.js.map +1 -0
  17. package/dist/chunks/importer-ByPGO-09.js +1614 -0
  18. package/dist/chunks/importer-ByPGO-09.js.map +1 -0
  19. package/dist/chunks/importer-DOepkgnG.js +1713 -0
  20. package/dist/chunks/importer-DOepkgnG.js.map +1 -0
  21. package/dist/chunks/json-elements-CZY1wiZh.js +779 -0
  22. package/dist/chunks/json-elements-CZY1wiZh.js.map +1 -0
  23. package/dist/chunks/ontology-BnrJ4I98.js +113 -0
  24. package/dist/chunks/ontology-BnrJ4I98.js.map +1 -0
  25. package/dist/chunks/{records-DSpbTE5s.js → records-BzNicMsf.js} +2 -2
  26. package/dist/chunks/{records-DSpbTE5s.js.map → records-BzNicMsf.js.map} +1 -1
  27. package/dist/chunks/{writer-DHHfHn11.js → report-BcWboivV.js} +106 -928
  28. package/dist/chunks/report-BcWboivV.js.map +1 -0
  29. package/dist/chunks/weights-CwISIpCP.js +176 -0
  30. package/dist/chunks/weights-CwISIpCP.js.map +1 -0
  31. package/dist/chunks/writer-DQiKgQJc.js +656 -0
  32. package/dist/chunks/writer-DQiKgQJc.js.map +1 -0
  33. package/dist/csv.js +5 -3
  34. package/dist/csv.js.map +1 -1
  35. package/dist/cx.d.ts +1 -0
  36. package/dist/cx.js +6 -0
  37. package/dist/cx.js.map +1 -0
  38. package/dist/cx2.d.ts +1 -0
  39. package/dist/cx2.js +10 -0
  40. package/dist/cx2.js.map +1 -0
  41. package/dist/dot.js +1 -1
  42. package/dist/gexf.js +15 -3
  43. package/dist/gexf.js.map +1 -1
  44. package/dist/gml.js +5 -3
  45. package/dist/gml.js.map +1 -1
  46. package/dist/graph-io.js +158 -383
  47. package/dist/graph-io.js.map +1 -1
  48. package/dist/graphml.js +1 -1
  49. package/dist/json.js +1 -1
  50. package/dist/neo4j.js +5 -3
  51. package/dist/neo4j.js.map +1 -1
  52. package/dist/obo.d.ts +1 -0
  53. package/dist/obo.js +6 -0
  54. package/dist/obo.js.map +1 -0
  55. package/dist/pajek.js +1 -1
  56. package/dist/src/common/json-elements.d.ts +286 -0
  57. package/dist/src/common/json-elements.d.ts.map +1 -0
  58. package/dist/src/common/json-elements.js +926 -0
  59. package/dist/src/common/json-elements.js.map +1 -0
  60. package/dist/src/common/ontology.d.ts +59 -0
  61. package/dist/src/common/ontology.d.ts.map +1 -0
  62. package/dist/src/common/ontology.js +147 -0
  63. package/dist/src/common/ontology.js.map +1 -0
  64. package/dist/src/formats/cx/importer.d.ts +133 -0
  65. package/dist/src/formats/cx/importer.d.ts.map +1 -0
  66. package/dist/src/formats/cx/importer.js +2220 -0
  67. package/dist/src/formats/cx/importer.js.map +1 -0
  68. package/dist/src/formats/cx/index.d.ts +7 -0
  69. package/dist/src/formats/cx/index.d.ts.map +1 -0
  70. package/dist/src/formats/cx/index.js +7 -0
  71. package/dist/src/formats/cx/index.js.map +1 -0
  72. package/dist/src/formats/cx2/exporter.d.ts +59 -0
  73. package/dist/src/formats/cx2/exporter.d.ts.map +1 -0
  74. package/dist/src/formats/cx2/exporter.js +864 -0
  75. package/dist/src/formats/cx2/exporter.js.map +1 -0
  76. package/dist/src/formats/cx2/importer.d.ts +169 -0
  77. package/dist/src/formats/cx2/importer.d.ts.map +1 -0
  78. package/dist/src/formats/cx2/importer.js +1652 -0
  79. package/dist/src/formats/cx2/importer.js.map +1 -0
  80. package/dist/src/formats/cx2/index.d.ts +7 -0
  81. package/dist/src/formats/cx2/index.d.ts.map +1 -0
  82. package/dist/src/formats/cx2/index.js +7 -0
  83. package/dist/src/formats/cx2/index.js.map +1 -0
  84. package/dist/src/formats/gexf/exporter.d.ts +2 -0
  85. package/dist/src/formats/gexf/exporter.d.ts.map +1 -1
  86. package/dist/src/formats/gexf/exporter.js +6 -0
  87. package/dist/src/formats/gexf/exporter.js.map +1 -1
  88. package/dist/src/formats/gexf/importer.d.ts +2 -4
  89. package/dist/src/formats/gexf/importer.d.ts.map +1 -1
  90. package/dist/src/formats/gexf/importer.js +2 -4
  91. package/dist/src/formats/gexf/importer.js.map +1 -1
  92. package/dist/src/formats/gexf/index.d.ts +1 -1
  93. package/dist/src/formats/gexf/index.js +2 -2
  94. package/dist/src/formats/gexf/index.js.map +1 -1
  95. package/dist/src/formats/gml/exporter.js +1 -1
  96. package/dist/src/formats/gml/exporter.js.map +1 -1
  97. package/dist/src/formats/json/dialect.d.ts +8 -6
  98. package/dist/src/formats/json/dialect.d.ts.map +1 -1
  99. package/dist/src/formats/json/dialect.js +26 -3
  100. package/dist/src/formats/json/dialect.js.map +1 -1
  101. package/dist/src/formats/json/importer.d.ts +324 -7
  102. package/dist/src/formats/json/importer.d.ts.map +1 -1
  103. package/dist/src/formats/json/importer.js +159 -126
  104. package/dist/src/formats/json/importer.js.map +1 -1
  105. package/dist/src/formats/json/obographs.d.ts +21 -0
  106. package/dist/src/formats/json/obographs.d.ts.map +1 -0
  107. package/dist/src/formats/json/obographs.js +476 -0
  108. package/dist/src/formats/json/obographs.js.map +1 -0
  109. package/dist/src/formats/obo/importer.d.ts +90 -0
  110. package/dist/src/formats/obo/importer.d.ts.map +1 -0
  111. package/dist/src/formats/obo/importer.js +1248 -0
  112. package/dist/src/formats/obo/importer.js.map +1 -0
  113. package/dist/src/formats/obo/index.d.ts +7 -0
  114. package/dist/src/formats/obo/index.d.ts.map +1 -0
  115. package/dist/src/formats/obo/index.js +7 -0
  116. package/dist/src/formats/obo/index.js.map +1 -0
  117. package/dist/src/formats/obo/syntax.d.ts +121 -0
  118. package/dist/src/formats/obo/syntax.d.ts.map +1 -0
  119. package/dist/src/formats/obo/syntax.js +424 -0
  120. package/dist/src/formats/obo/syntax.js.map +1 -0
  121. package/dist/src/index.d.ts +3 -0
  122. package/dist/src/index.d.ts.map +1 -1
  123. package/dist/src/index.js +3 -0
  124. package/dist/src/index.js.map +1 -1
  125. package/dist/src/registry.d.ts.map +1 -1
  126. package/dist/src/registry.js +8 -1
  127. package/dist/src/registry.js.map +1 -1
  128. package/dist/src/sniff.d.ts +1 -1
  129. package/dist/src/sniff.d.ts.map +1 -1
  130. package/dist/src/sniff.js +25 -3
  131. package/dist/src/sniff.js.map +1 -1
  132. package/package.json +16 -1
  133. package/src/common/json-elements.ts +1147 -0
  134. package/src/common/ontology.ts +169 -0
  135. package/src/formats/cx/importer.ts +2733 -0
  136. package/src/formats/cx/index.ts +7 -0
  137. package/src/formats/cx2/exporter.ts +1036 -0
  138. package/src/formats/cx2/importer.ts +2187 -0
  139. package/src/formats/cx2/index.ts +7 -0
  140. package/src/formats/gexf/exporter.ts +11 -0
  141. package/src/formats/gexf/importer.ts +2 -2
  142. package/src/formats/gexf/index.ts +1 -1
  143. package/src/formats/gml/exporter.ts +1 -1
  144. package/src/formats/json/dialect.ts +37 -7
  145. package/src/formats/json/importer.ts +210 -132
  146. package/src/formats/json/obographs.ts +563 -0
  147. package/src/formats/obo/importer.ts +1695 -0
  148. package/src/formats/obo/index.ts +7 -0
  149. package/src/formats/obo/syntax.ts +466 -0
  150. package/src/index.ts +11 -0
  151. package/src/registry.ts +8 -1
  152. package/src/sniff.ts +48 -5
  153. package/dist/chunks/importer-B6rKRxzv.js.map +0 -1
  154. package/dist/chunks/writer-DHHfHn11.js.map +0 -1
package/src/formats/cx/index.ts ADDED
@@ -0,0 +1,7 @@
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+ /**
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+ * The `@graphty/graph-io/cx` subpath (design/graph-io/cytoscape-and-obo/design.md section 1.2):
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+ * the CX version 1 importer with its option type and code table. CX1 is read only: CX2 is what
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+ * NDEx and Cytoscape write today, and `@graphty/graph-io/cx2` writes it.
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+ */
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+
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+ export { CX_ISSUE, cxImporter, type CxImportOptions } from "./importer.js";