npm - @graphty/algorithms - Versions diffs - 1.3.1 → 1.5.0 - Mend

@graphty/algorithms 1.3.1 → 1.5.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (314) hide show

package/README.md +368 -422
package/dist/algorithms.js +567 -264
package/dist/algorithms.js.map +1 -1
package/dist/src/algorithms/centrality/betweenness.d.ts +10 -0
package/dist/src/algorithms/centrality/betweenness.d.ts.map +1 -1
package/dist/src/algorithms/centrality/betweenness.js +27 -6
package/dist/src/algorithms/centrality/betweenness.js.map +1 -1
package/dist/src/algorithms/centrality/closeness.d.ts +11 -2
package/dist/src/algorithms/centrality/closeness.d.ts.map +1 -1
package/dist/src/algorithms/centrality/closeness.js +17 -3
package/dist/src/algorithms/centrality/closeness.js.map +1 -1
package/dist/src/algorithms/centrality/degree.d.ts +7 -0
package/dist/src/algorithms/centrality/degree.d.ts.map +1 -1
package/dist/src/algorithms/centrality/degree.js +9 -6
package/dist/src/algorithms/centrality/degree.js.map +1 -1
package/dist/src/algorithms/centrality/delta-pagerank-simple.d.ts +21 -3
package/dist/src/algorithms/centrality/delta-pagerank-simple.d.ts.map +1 -1
package/dist/src/algorithms/centrality/delta-pagerank-simple.js +25 -7
package/dist/src/algorithms/centrality/delta-pagerank-simple.js.map +1 -1
package/dist/src/algorithms/centrality/delta-pagerank.d.ts +28 -2
package/dist/src/algorithms/centrality/delta-pagerank.d.ts.map +1 -1
package/dist/src/algorithms/centrality/delta-pagerank.js +30 -4
package/dist/src/algorithms/centrality/delta-pagerank.js.map +1 -1
package/dist/src/algorithms/centrality/eigenvector.d.ts +10 -3
package/dist/src/algorithms/centrality/eigenvector.d.ts.map +1 -1
package/dist/src/algorithms/centrality/eigenvector.js +11 -4
package/dist/src/algorithms/centrality/eigenvector.js.map +1 -1
package/dist/src/algorithms/centrality/hits.d.ts +10 -3
package/dist/src/algorithms/centrality/hits.d.ts.map +1 -1
package/dist/src/algorithms/centrality/hits.js +11 -4
package/dist/src/algorithms/centrality/hits.js.map +1 -1
package/dist/src/algorithms/centrality/index.d.ts +1 -1
package/dist/src/algorithms/centrality/index.d.ts.map +1 -1
package/dist/src/algorithms/centrality/index.js +1 -1
package/dist/src/algorithms/centrality/index.js.map +1 -1
package/dist/src/algorithms/centrality/katz.d.ts +10 -3
package/dist/src/algorithms/centrality/katz.d.ts.map +1 -1
package/dist/src/algorithms/centrality/katz.js +13 -8
package/dist/src/algorithms/centrality/katz.js.map +1 -1
package/dist/src/algorithms/centrality/pagerank.d.ts +14 -0
package/dist/src/algorithms/centrality/pagerank.d.ts.map +1 -1
package/dist/src/algorithms/centrality/pagerank.js +16 -1
package/dist/src/algorithms/centrality/pagerank.js.map +1 -1
package/dist/src/algorithms/community/girvan-newman.d.ts +2 -3
package/dist/src/algorithms/community/girvan-newman.d.ts.map +1 -1
package/dist/src/algorithms/community/girvan-newman.js +21 -4
package/dist/src/algorithms/community/girvan-newman.js.map +1 -1
package/dist/src/algorithms/community/index.d.ts.map +1 -1
package/dist/src/algorithms/community/index.js.map +1 -1
package/dist/src/algorithms/community/label-propagation.d.ts +0 -3
package/dist/src/algorithms/community/label-propagation.d.ts.map +1 -1
package/dist/src/algorithms/community/label-propagation.js +13 -6
package/dist/src/algorithms/community/label-propagation.js.map +1 -1
package/dist/src/algorithms/community/leiden.d.ts +0 -1
package/dist/src/algorithms/community/leiden.d.ts.map +1 -1
package/dist/src/algorithms/community/leiden.js +37 -6
package/dist/src/algorithms/community/leiden.js.map +1 -1
package/dist/src/algorithms/community/louvain-optimized.d.ts +37 -0
package/dist/src/algorithms/community/louvain-optimized.d.ts.map +1 -1
package/dist/src/algorithms/community/louvain-optimized.js +42 -7
package/dist/src/algorithms/community/louvain-optimized.js.map +1 -1
package/dist/src/algorithms/community/louvain.d.ts +2 -3
package/dist/src/algorithms/community/louvain.d.ts.map +1 -1
package/dist/src/algorithms/community/louvain.js +19 -6
package/dist/src/algorithms/community/louvain.js.map +1 -1
package/dist/src/algorithms/community/modularity-utils.d.ts +0 -4
package/dist/src/algorithms/community/modularity-utils.d.ts.map +1 -1
package/dist/src/algorithms/community/modularity-utils.js +1 -5
package/dist/src/algorithms/community/modularity-utils.js.map +1 -1
package/dist/src/algorithms/components/connected.d.ts +23 -0
package/dist/src/algorithms/components/connected.d.ts.map +1 -1
package/dist/src/algorithms/components/connected.js +29 -3
package/dist/src/algorithms/components/connected.js.map +1 -1
package/dist/src/algorithms/matching/bipartite.d.ts +10 -0
package/dist/src/algorithms/matching/bipartite.d.ts.map +1 -1
package/dist/src/algorithms/matching/bipartite.js +10 -0
package/dist/src/algorithms/matching/bipartite.js.map +1 -1
package/dist/src/algorithms/matching/index.d.ts.map +1 -1
package/dist/src/algorithms/matching/index.js.map +1 -1
package/dist/src/algorithms/matching/isomorphism.d.ts +8 -0
package/dist/src/algorithms/matching/isomorphism.d.ts.map +1 -1
package/dist/src/algorithms/matching/isomorphism.js +36 -2
package/dist/src/algorithms/matching/isomorphism.js.map +1 -1
package/dist/src/algorithms/mst/index.d.ts.map +1 -1
package/dist/src/algorithms/mst/index.js.map +1 -1
package/dist/src/algorithms/mst/kruskal.d.ts +14 -0
package/dist/src/algorithms/mst/kruskal.d.ts.map +1 -1
package/dist/src/algorithms/mst/kruskal.js +17 -3
package/dist/src/algorithms/mst/kruskal.js.map +1 -1
package/dist/src/algorithms/mst/prim.d.ts +9 -0
package/dist/src/algorithms/mst/prim.d.ts.map +1 -1
package/dist/src/algorithms/mst/prim.js +9 -0
package/dist/src/algorithms/mst/prim.js.map +1 -1
package/dist/src/algorithms/shortest-path/bellman-ford.d.ts +10 -0
package/dist/src/algorithms/shortest-path/bellman-ford.d.ts.map +1 -1
package/dist/src/algorithms/shortest-path/bellman-ford.js +10 -0
package/dist/src/algorithms/shortest-path/bellman-ford.js.map +1 -1
package/dist/src/algorithms/shortest-path/bidirectional-dijkstra.d.ts +12 -5
package/dist/src/algorithms/shortest-path/bidirectional-dijkstra.d.ts.map +1 -1
package/dist/src/algorithms/shortest-path/bidirectional-dijkstra.js +19 -17
package/dist/src/algorithms/shortest-path/bidirectional-dijkstra.js.map +1 -1
package/dist/src/algorithms/shortest-path/dijkstra.d.ts +15 -0
package/dist/src/algorithms/shortest-path/dijkstra.d.ts.map +1 -1
package/dist/src/algorithms/shortest-path/dijkstra.js +15 -0
package/dist/src/algorithms/shortest-path/dijkstra.js.map +1 -1
package/dist/src/algorithms/shortest-path/floyd-warshall.d.ts +17 -0
package/dist/src/algorithms/shortest-path/floyd-warshall.d.ts.map +1 -1
package/dist/src/algorithms/shortest-path/floyd-warshall.js +17 -0
package/dist/src/algorithms/shortest-path/floyd-warshall.js.map +1 -1
package/dist/src/algorithms/shortest-path/index.d.ts.map +1 -1
package/dist/src/algorithms/shortest-path/index.js.map +1 -1
package/dist/src/algorithms/traversal/bfs-unified.d.ts +13 -0
package/dist/src/algorithms/traversal/bfs-unified.d.ts.map +1 -1
package/dist/src/algorithms/traversal/bfs-unified.js +37 -0
package/dist/src/algorithms/traversal/bfs-unified.js.map +1 -1
package/dist/src/algorithms/traversal/bfs-variants.d.ts +23 -0
package/dist/src/algorithms/traversal/bfs-variants.d.ts.map +1 -1
package/dist/src/algorithms/traversal/bfs-variants.js +34 -0
package/dist/src/algorithms/traversal/bfs-variants.js.map +1 -1
package/dist/src/algorithms/traversal/bfs.d.ts +1 -1
package/dist/src/algorithms/traversal/bfs.d.ts.map +1 -1
package/dist/src/algorithms/traversal/bfs.js +1 -1
package/dist/src/algorithms/traversal/bfs.js.map +1 -1
package/dist/src/algorithms/traversal/dfs.d.ts +10 -0
package/dist/src/algorithms/traversal/dfs.d.ts.map +1 -1
package/dist/src/algorithms/traversal/dfs.js +48 -0
package/dist/src/algorithms/traversal/dfs.js.map +1 -1
package/dist/src/algorithms/traversal/index.d.ts.map +1 -1
package/dist/src/algorithms/traversal/index.js.map +1 -1
package/dist/src/benchmark-all-algorithms.d.ts +2 -0
package/dist/src/benchmark-all-algorithms.d.ts.map +1 -1
package/dist/src/benchmark-all-algorithms.js +32 -3
package/dist/src/benchmark-all-algorithms.js.map +1 -1
package/dist/src/clustering/hierarchical.d.ts +8 -1
package/dist/src/clustering/hierarchical.d.ts.map +1 -1
package/dist/src/clustering/hierarchical.js +22 -6
package/dist/src/clustering/hierarchical.js.map +1 -1
package/dist/src/clustering/index.d.ts.map +1 -1
package/dist/src/clustering/index.js.map +1 -1
package/dist/src/clustering/k-core.d.ts +2 -5
package/dist/src/clustering/k-core.d.ts.map +1 -1
package/dist/src/clustering/k-core.js +14 -12
package/dist/src/clustering/k-core.js.map +1 -1
package/dist/src/clustering/mcl.d.ts +6 -0
package/dist/src/clustering/mcl.d.ts.map +1 -1
package/dist/src/clustering/mcl.js +34 -3
package/dist/src/clustering/mcl.js.map +1 -1
package/dist/src/clustering/spectral.d.ts +4 -1
package/dist/src/clustering/spectral.d.ts.map +1 -1
package/dist/src/clustering/spectral.js +61 -28
package/dist/src/clustering/spectral.js.map +1 -1
package/dist/src/core/graph.d.ts +45 -0
package/dist/src/core/graph.d.ts.map +1 -1
package/dist/src/core/graph.js +45 -1
package/dist/src/core/graph.js.map +1 -1
package/dist/src/data-structures/index.d.ts.map +1 -1
package/dist/src/data-structures/index.js.map +1 -1
package/dist/src/data-structures/priority-queue.d.ts +18 -1
package/dist/src/data-structures/priority-queue.d.ts.map +1 -1
package/dist/src/data-structures/priority-queue.js +26 -5
package/dist/src/data-structures/priority-queue.js.map +1 -1
package/dist/src/data-structures/union-find.d.ts +21 -0
package/dist/src/data-structures/union-find.d.ts.map +1 -1
package/dist/src/data-structures/union-find.js +21 -0
package/dist/src/data-structures/union-find.js.map +1 -1
package/dist/src/flow/ford-fulkerson.d.ts +4 -2
package/dist/src/flow/ford-fulkerson.d.ts.map +1 -1
package/dist/src/flow/ford-fulkerson.js +31 -2
package/dist/src/flow/ford-fulkerson.js.map +1 -1
package/dist/src/flow/min-cut.d.ts +0 -3
package/dist/src/flow/min-cut.d.ts.map +1 -1
package/dist/src/flow/min-cut.js +17 -4
package/dist/src/flow/min-cut.js.map +1 -1
package/dist/src/index.d.ts +2 -1
package/dist/src/index.d.ts.map +1 -1
package/dist/src/index.js +2 -1
package/dist/src/index.js.map +1 -1
package/dist/src/link-prediction/adamic-adar.d.ts +26 -0
package/dist/src/link-prediction/adamic-adar.d.ts.map +1 -1
package/dist/src/link-prediction/adamic-adar.js +36 -10
package/dist/src/link-prediction/adamic-adar.js.map +1 -1
package/dist/src/link-prediction/common-neighbors.d.ts +21 -0
package/dist/src/link-prediction/common-neighbors.d.ts.map +1 -1
package/dist/src/link-prediction/common-neighbors.js +27 -6
package/dist/src/link-prediction/common-neighbors.js.map +1 -1
package/dist/src/link-prediction/index.d.ts.map +1 -1
package/dist/src/optimized/bit-packed.d.ts +103 -53
package/dist/src/optimized/bit-packed.d.ts.map +1 -1
package/dist/src/optimized/bit-packed.js +104 -54
package/dist/src/optimized/bit-packed.js.map +1 -1
package/dist/src/optimized/csr-graph.d.ts +87 -24
package/dist/src/optimized/csr-graph.d.ts.map +1 -1
package/dist/src/optimized/csr-graph.js +87 -24
package/dist/src/optimized/csr-graph.js.map +1 -1
package/dist/src/optimized/direction-optimized-bfs.d.ts +37 -16
package/dist/src/optimized/direction-optimized-bfs.d.ts.map +1 -1
package/dist/src/optimized/direction-optimized-bfs.js +39 -20
package/dist/src/optimized/direction-optimized-bfs.js.map +1 -1
package/dist/src/optimized/graph-adapter.d.ts +58 -9
package/dist/src/optimized/graph-adapter.d.ts.map +1 -1
package/dist/src/optimized/graph-adapter.js +58 -10
package/dist/src/optimized/graph-adapter.js.map +1 -1
package/dist/src/optimized/index.d.ts +1 -1
package/dist/src/optimized/index.d.ts.map +1 -1
package/dist/src/optimized/index.js +3 -1
package/dist/src/optimized/index.js.map +1 -1
package/dist/src/pathfinding/astar.d.ts +25 -9
package/dist/src/pathfinding/astar.d.ts.map +1 -1
package/dist/src/pathfinding/astar.js +25 -10
package/dist/src/pathfinding/astar.js.map +1 -1
package/dist/src/pathfinding/utils.d.ts +15 -6
package/dist/src/pathfinding/utils.d.ts.map +1 -1
package/dist/src/pathfinding/utils.js +19 -7
package/dist/src/pathfinding/utils.js.map +1 -1
package/dist/src/research/grsbm.d.ts +0 -1
package/dist/src/research/grsbm.d.ts.map +1 -1
package/dist/src/research/grsbm.js +23 -10
package/dist/src/research/grsbm.js.map +1 -1
package/dist/src/research/index.d.ts.map +1 -1
package/dist/src/research/index.js.map +1 -1
package/dist/src/research/sync.d.ts +0 -1
package/dist/src/research/sync.d.ts.map +1 -1
package/dist/src/research/sync.js +29 -8
package/dist/src/research/sync.js.map +1 -1
package/dist/src/research/terahac.d.ts +0 -1
package/dist/src/research/terahac.d.ts.map +1 -1
package/dist/src/research/terahac.js +32 -4
package/dist/src/research/terahac.js.map +1 -1
package/dist/src/utils/graph-converters.d.ts +31 -0
package/dist/src/utils/graph-converters.d.ts.map +1 -1
package/dist/src/utils/graph-converters.js +31 -0
package/dist/src/utils/graph-converters.js.map +1 -1
package/dist/src/utils/graph-utilities.d.ts.map +1 -1
package/dist/src/utils/graph-utilities.js.map +1 -1
package/dist/src/utils/math-utilities.d.ts +11 -0
package/dist/src/utils/math-utilities.d.ts.map +1 -1
package/dist/src/utils/math-utilities.js +14 -5
package/dist/src/utils/math-utilities.js.map +1 -1
package/dist/src/utils/optimization-helpers.d.ts +9 -0
package/dist/src/utils/optimization-helpers.d.ts.map +1 -1
package/dist/src/utils/optimization-helpers.js +12 -0
package/dist/src/utils/optimization-helpers.js.map +1 -1
package/dist/src/utils/priorityQueue.d.ts +24 -0
package/dist/src/utils/priorityQueue.d.ts.map +1 -1
package/dist/src/utils/priorityQueue.js +34 -4
package/dist/src/utils/priorityQueue.js.map +1 -1
package/dist/tsconfig.tsbuildinfo +1 -0
package/package.json +56 -65
package/src/algorithms/centrality/betweenness.ts +34 -17
package/src/algorithms/centrality/closeness.ts +34 -17
package/src/algorithms/centrality/degree.ts +15 -19
package/src/algorithms/centrality/delta-pagerank-simple.ts +36 -28
package/src/algorithms/centrality/delta-pagerank.ts +34 -11
package/src/algorithms/centrality/eigenvector.ts +14 -15
package/src/algorithms/centrality/hits.ts +17 -17
package/src/algorithms/centrality/index.ts +20 -15
package/src/algorithms/centrality/katz.ts +17 -25
package/src/algorithms/centrality/pagerank.ts +26 -17
package/src/algorithms/community/girvan-newman.ts +39 -28
package/src/algorithms/community/index.ts +6 -7
package/src/algorithms/community/label-propagation.ts +20 -28
package/src/algorithms/community/leiden.ts +61 -37
package/src/algorithms/community/louvain-optimized.ts +49 -20
package/src/algorithms/community/louvain.ts +35 -25
package/src/algorithms/community/modularity-utils.ts +5 -17
package/src/algorithms/components/connected.ts +40 -17
package/src/algorithms/matching/bipartite.ts +17 -10
package/src/algorithms/matching/index.ts +4 -4
package/src/algorithms/matching/isomorphism.ts +53 -23
package/src/algorithms/mst/index.ts +3 -4
package/src/algorithms/mst/kruskal.ts +21 -6
package/src/algorithms/mst/prim.ts +13 -4
package/src/algorithms/shortest-path/bellman-ford.ts +16 -15
package/src/algorithms/shortest-path/bidirectional-dijkstra.ts +29 -29
package/src/algorithms/shortest-path/dijkstra.ts +23 -17
package/src/algorithms/shortest-path/floyd-warshall.ts +21 -4
package/src/algorithms/shortest-path/index.ts +5 -5
package/src/algorithms/traversal/bfs-unified.ts +64 -60
package/src/algorithms/traversal/bfs-variants.ts +61 -37
package/src/algorithms/traversal/bfs.ts +1 -7
package/src/algorithms/traversal/dfs.ts +61 -42
package/src/algorithms/traversal/index.ts +3 -3
package/src/benchmark-all-algorithms.ts +57 -25
package/src/clustering/hierarchical.ts +40 -34
package/src/clustering/index.ts +8 -8
package/src/clustering/k-core.ts +26 -42
package/src/clustering/mcl.ts +53 -23
package/src/clustering/spectral.ts +91 -57
package/src/core/graph.ts +54 -14
package/src/data-structures/index.ts +2 -2
package/src/data-structures/priority-queue.ts +36 -11
package/src/data-structures/union-find.ts +22 -1
package/src/flow/ford-fulkerson.ts +62 -35
package/src/flow/min-cut.ts +43 -45
package/src/index.ts +3 -2
package/src/link-prediction/adamic-adar.ts +65 -51
package/src/link-prediction/common-neighbors.ts +45 -36
package/src/link-prediction/index.ts +1 -1
package/src/optimized/bit-packed.ts +106 -56
package/src/optimized/csr-graph.ts +93 -30
package/src/optimized/direction-optimized-bfs.ts +44 -25
package/src/optimized/graph-adapter.ts +64 -16
package/src/optimized/index.ts +7 -9
package/src/pathfinding/astar.ts +40 -25
package/src/pathfinding/utils.ts +20 -13
package/src/research/grsbm.ts +31 -25
package/src/research/index.ts +4 -4
package/src/research/sync.ts +40 -24
package/src/research/terahac.ts +54 -20
package/src/utils/graph-converters.ts +42 -14
package/src/utils/graph-utilities.ts +11 -37
package/src/utils/math-utilities.ts +17 -8
package/src/utils/optimization-helpers.ts +27 -21
package/src/utils/priorityQueue.ts +40 -6

package/dist/src/research/grsbm.js.map CHANGED Viewed

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package/dist/src/research/index.d.ts.map CHANGED Viewed

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package/dist/src/research/sync.d.ts CHANGED Viewed

@@ -40,7 +40,6 @@ export interface SynCResult {
  * embeddings and cluster assignments while preserving graph structure.
  *
  * Based on: "Synergistic Deep Graph Clustering" (arXiv:2406.15797, June 2024)
- *
  * @param graph - Input graph to cluster
  * @param config - Configuration options
  * @returns Clustering result with assignments and embeddings

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package/dist/src/research/sync.js CHANGED Viewed

@@ -7,13 +7,12 @@ import { euclideanDistance, SeededRandom } from "../utils/math-utilities.js";
  * embeddings and cluster assignments while preserving graph structure.
  *
  * Based on: "Synergistic Deep Graph Clustering" (arXiv:2406.15797, June 2024)
- *
  * @param graph - Input graph to cluster
  * @param config - Configuration options
  * @returns Clustering result with assignments and embeddings
  */
 export function syncClustering(graph, config) {
-    const { numClusters, maxIterations = 100, tolerance = 1e-6, seed = 42, learningRate = 0.01, lambda = 0.1, } = config;
+    const { numClusters, maxIterations = 100, tolerance = 1e-6, seed = 42, learningRate = 0.01, lambda = 0.1 } = config;
     // Set random seed for reproducibility (save original)
     const originalRandom = Math.random;
     const rng = SeededRandom.createGenerator(seed);
@@ -114,6 +113,10 @@ export function syncClustering(graph, config) {
 }
 /**
  * Initialize node embedding based on graph structure and features
+ * @param graph - The input graph
+ * @param nodeId - The node ID to initialize embedding for
+ * @param dim - The embedding dimension
+ * @returns The initialized embedding vector
  */
 function initializeNodeEmbedding(graph, nodeId, dim) {
     const embedding = new Array(dim).fill(0);
@@ -122,12 +125,15 @@ function initializeNodeEmbedding(graph, nodeId, dim) {
     const normalizedDegree = degree / Math.max(1, graph.nodeCount - 1);
     // Initialize with small random values influenced by graph structure
     for (let i = 0; i < dim; i++) {
-        embedding[i] = ((Math.random() - 0.5) * 0.1) + (normalizedDegree * 0.1);
+        embedding[i] = (Math.random() - 0.5) * 0.1 + normalizedDegree * 0.1;
     }
     return embedding;
 }
 /**
  * Initialize cluster centers using k-means++ style initialization
+ * @param embeddings - Map of node IDs to embedding vectors
+ * @param numClusters - Number of cluster centers to initialize
+ * @returns Array of initialized cluster center vectors
  */
 function initializeClusterCenters(embeddings, numClusters) {
     const embeddingArray = Array.from(embeddings.values());
@@ -170,8 +176,13 @@ function initializeClusterCenters(embeddings, numClusters) {
 }
 /**
  * Update node embeddings using gradient descent
+ * @param graph - The input graph
+ * @param embeddings - Map of node IDs to embedding vectors
+ * @param _clusters - Map of node IDs to cluster assignments (reserved for future use)
+ * @param learningRate - Learning rate for gradient descent
+ * @param lambda - Regularization parameter
  */
-function updateEmbeddings(graph, embeddings, clusters, learningRate, lambda) {
+function updateEmbeddings(graph, embeddings, _clusters, learningRate, lambda) {
     const gradients = new Map();
     // Initialize gradients
     for (const [nodeId, embedding] of embeddings) {
@@ -199,7 +210,7 @@ function updateEmbeddings(graph, embeddings, clusters, learningRate, lambda) {
                 const gradVal = gradient[i];
                 const diffVal = diff[i];
                 if (gradVal !== undefined && diffVal !== undefined) {
-                    gradient[i] = gradVal + (lambda * diffVal);
+                    gradient[i] = gradVal + lambda * diffVal;
                 }
             }
         }
@@ -208,7 +219,7 @@ function updateEmbeddings(graph, embeddings, clusters, learningRate, lambda) {
             const gradVal = gradient[i];
             const nodeVal = nodeEmbedding[i];
             if (gradVal !== undefined && nodeVal !== undefined) {
-                gradient[i] = gradVal + (lambda * nodeVal);
+                gradient[i] = gradVal + lambda * nodeVal;
             }
         }
     }
@@ -222,13 +233,17 @@ function updateEmbeddings(graph, embeddings, clusters, learningRate, lambda) {
             const embVal = embedding[i];
             const gradVal = gradient[i];
             if (embVal !== undefined && gradVal !== undefined) {
-                embedding[i] = embVal - (learningRate * gradVal);
+                embedding[i] = embVal - learningRate * gradVal;
             }
         }
     }
 }
 /**
  * Update cluster centers based on current assignments
+ * @param embeddings - Map of node IDs to embedding vectors
+ * @param clusters - Map of node IDs to cluster assignments
+ * @param clusterCenters - Array of cluster center vectors to update
+ * @param numClusters - Number of clusters
  */
 function updateClusterCenters(embeddings, clusters, clusterCenters, numClusters) {
     const dimensions = clusterCenters[0]?.length ?? 0;
@@ -272,6 +287,12 @@ function updateClusterCenters(embeddings, clusters, clusterCenters, numClusters)
 }
 /**
  * Calculate the total loss function
+ * @param graph - The input graph
+ * @param embeddings - Map of node IDs to embedding vectors
+ * @param clusters - Map of node IDs to cluster assignments
+ * @param clusterCenters - Array of cluster center vectors
+ * @param lambda - Regularization parameter
+ * @returns The total loss value
  */
 function calculateLoss(graph, embeddings, clusters, clusterCenters, lambda) {
     let clusteringLoss = 0;
@@ -311,6 +332,6 @@ function calculateLoss(graph, embeddings, clusters, clusterCenters, lambda) {
             regularizationLoss += value ** 2;
         }
     }
-    return clusteringLoss + (lambda * reconstructionLoss) + (lambda * regularizationLoss);
+    return clusteringLoss + lambda * reconstructionLoss + lambda * regularizationLoss;
 }
 //# sourceMappingURL=sync.js.map

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package/dist/src/research/terahac.d.ts CHANGED Viewed

@@ -56,7 +56,6 @@ export interface TeraHACResult {
  *
  * Based on: "Scaling Hierarchical Agglomerative Clustering to Trillion-Edge Graphs"
  * Google Research 2024
- *
  * @param graph - Input graph to cluster
  * @param config - Configuration options
  * @returns Hierarchical clustering result

package/dist/src/research/terahac.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/src/research/terahac.js CHANGED Viewed

@@ -7,7 +7,6 @@
  *
  * Based on: "Scaling Hierarchical Agglomerative Clustering to Trillion-Edge Graphs"
  * Google Research 2024
- *
  * @param graph - Input graph to cluster
  * @param config - Configuration options
  * @returns Hierarchical clustering result
@@ -129,6 +128,10 @@ export function teraHAC(graph, config = {}) {
 }
 /**
  * Calculate distance matrix between all pairs of nodes
+ * @param graph - The input graph
+ * @param nodes - Array of nodes to calculate distances between
+ * @param useGraphDistance - Whether to use graph-based shortest path distances
+ * @returns 2D distance matrix
  */
 function calculateDistanceMatrix(graph, nodes, useGraphDistance) {
     const n = nodes.length;
@@ -196,6 +199,9 @@ function calculateDistanceMatrix(graph, nodes, useGraphDistance) {
 }
 /**
  * BFS-based shortest path calculation from a source node
+ * @param graph - The input graph
+ * @param source - The source node ID
+ * @returns Map of node IDs to their distances from the source
  */
 function bfsShortestPaths(graph, source) {
     const distances = new Map();
@@ -221,6 +227,9 @@ function bfsShortestPaths(graph, source) {
 }
 /**
  * Initialize merge candidates priority queue
+ * @param clusters - Map of cluster IDs to cluster nodes
+ * @param distanceMatrix - 2D distance matrix between nodes
+ * @returns Array of merge candidates sorted by distance
  */
 function initializeMergeCandidates(clusters, distanceMatrix) {
     const candidates = [];
@@ -251,6 +260,8 @@ function initializeMergeCandidates(clusters, distanceMatrix) {
 }
 /**
  * Find the closest pair of clusters
+ * @param mergeCandidates - Array of merge candidates
+ * @returns The closest cluster pair with their distance
  */
 function findClosestPair(mergeCandidates) {
     // Return the first (closest) valid candidate
@@ -262,6 +273,13 @@ function findClosestPair(mergeCandidates) {
 }
 /**
  * Update merge candidates after a merge operation
+ * @param mergeCandidates - Array of merge candidates to update
+ * @param oldCluster1Id - ID of first merged cluster
+ * @param oldCluster2Id - ID of second merged cluster
+ * @param newClusterId - ID of the newly created cluster
+ * @param clusters - Map of cluster IDs to cluster nodes
+ * @param distanceMatrix - 2D distance matrix between nodes
+ * @param linkage - Linkage criterion to use
  */
 function updateMergeCandidates(mergeCandidates, oldCluster1Id, oldCluster2Id, newClusterId, clusters, distanceMatrix, linkage) {
     // Remove candidates involving the merged clusters
@@ -270,8 +288,10 @@ function updateMergeCandidates(mergeCandidates, oldCluster1Id, oldCluster2Id, ne
         if (!candidate) {
             continue;
         }
-        if (candidate.cluster1Id === oldCluster1Id || candidate.cluster1Id === oldCluster2Id ||
-            candidate.cluster2Id === oldCluster1Id || candidate.cluster2Id === oldCluster2Id) {
+        if (candidate.cluster1Id === oldCluster1Id ||
+            candidate.cluster1Id === oldCluster2Id ||
+            candidate.cluster2Id === oldCluster1Id ||
+            candidate.cluster2Id === oldCluster2Id) {
             mergeCandidates.splice(i, 1);
         }
     }
@@ -295,6 +315,11 @@ function updateMergeCandidates(mergeCandidates, oldCluster1Id, oldCluster2Id, ne
 }
 /**
  * Calculate distance between two clusters based on linkage criterion
+ * @param cluster1 - First cluster
+ * @param cluster2 - Second cluster
+ * @param distanceMatrix - 2D distance matrix between nodes
+ * @param linkage - Linkage criterion (single, complete, average, ward)
+ * @returns The distance between the two clusters
  */
 function calculateClusterDistance(cluster1, cluster2, distanceMatrix, linkage) {
     const members1 = Array.from(cluster1.members);
@@ -329,13 +354,16 @@ function calculateClusterDistance(cluster1, cluster2, distanceMatrix, linkage) {
             return distances.reduce((sum, d) => sum + d, 0) / distances.length;
         case "ward":
             // Simplified Ward linkage (would need cluster centroids for full implementation)
-            return distances.reduce((sum, d) => sum + (d * d), 0) / distances.length;
+            return distances.reduce((sum, d) => sum + d * d, 0) / distances.length;
         default:
             return distances.reduce((sum, d) => sum + d, 0) / distances.length;
     }
 }
 /**
  * Extract flat clustering from dendrogram
+ * @param dendrogram - The root of the dendrogram tree
+ * @param numClusters - The target number of clusters
+ * @returns Map of node IDs to cluster assignments
  */
 function extractFlatClustering(dendrogram, numClusters) {
     const clusters = new Map();

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package/dist/src/utils/graph-converters.d.ts CHANGED Viewed

@@ -3,10 +3,15 @@ import type { NodeId } from "../types/index.js";
 /**
  * Convert Graph class to Map representation
  * Used by community detection and flow algorithms
+ * @param graph - The Graph instance to convert
+ * @returns A nested Map where outer keys are source nodes and inner maps contain target nodes with edge weights
  */
 export declare function graphToMap(graph: Graph): Map<string, Map<string, number>>;
 /**
  * Convert Map representation to Graph class
+ * @param map - The nested Map representation of the graph
+ * @param isDirected - Whether the resulting graph should be directed (defaults to true)
+ * @returns A new Graph instance with nodes and edges from the map
  */
 export declare function mapToGraph(map: Map<string, Map<string, number>>, isDirected?: boolean): Graph;
 /**
@@ -16,27 +21,41 @@ export declare function mapToGraph(map: Map<string, Map<string, number>>, isDire
 export declare class GraphAdapter {
     private map;
     readonly isDirected: boolean;
+    /**
+     * Creates a new GraphAdapter instance wrapping a Map representation.
+     * @param map - The nested Map representation of the graph
+     * @param isDirected - Whether the graph should be treated as directed (defaults to true)
+     */
     constructor(map: Map<string, Map<string, number>>, isDirected?: boolean);
     /**
      * Get all nodes
+     * @returns Array of node objects with their ids
      */
     nodes(): {
         id: NodeId;
     }[];
     /**
      * Get node count
+     * @returns The total number of nodes in the graph
      */
     get nodeCount(): number;
     /**
      * Check if node exists
+     * @param nodeId - The id of the node to check
+     * @returns True if the node exists, false otherwise
      */
     hasNode(nodeId: NodeId): boolean;
     /**
      * Get neighbors of a node
+     * @param nodeId - The id of the node to get neighbors for
+     * @returns Array of neighbor node ids
      */
     neighbors(nodeId: NodeId): NodeId[];
     /**
      * Get edge between two nodes
+     * @param source - The source node id
+     * @param target - The target node id
+     * @returns The edge object with source, target and weight, or null if no edge exists
      */
     getEdge(source: NodeId, target: NodeId): {
         source: NodeId;
@@ -45,10 +64,14 @@ export declare class GraphAdapter {
     } | null;
     /**
      * Check if edge exists
+     * @param source - The source node id
+     * @param target - The target node id
+     * @returns True if an edge exists between source and target, false otherwise
      */
     hasEdge(source: NodeId, target: NodeId): boolean;
     /**
      * Get all edges
+     * @returns Array of edge objects with source, target and optional weight
      */
     edges(): {
         source: NodeId;
@@ -57,22 +80,30 @@ export declare class GraphAdapter {
     }[];
     /**
      * Get edge count
+     * @returns The total number of edges in the graph
      */
     get edgeCount(): number;
     /**
      * Get node degree
+     * @param nodeId - The id of the node to get degree for
+     * @returns The number of edges connected to the node
      */
     degree(nodeId: NodeId): number;
     /**
      * Get in-degree (for directed graphs)
+     * @param nodeId - The id of the node to get in-degree for
+     * @returns The number of incoming edges to the node
      */
     inDegree(nodeId: NodeId): number;
     /**
      * Get out-degree (for directed graphs)
+     * @param nodeId - The id of the node to get out-degree for
+     * @returns The number of outgoing edges from the node
      */
     outDegree(nodeId: NodeId): number;
     /**
      * Get underlying map representation
+     * @returns The internal Map representation of the graph
      */
     getMap(): Map<string, Map<string, number>>;
 }

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