@google/gemini-cli 0.11.0-preview.0 → 0.12.0-nightly.20251023.c4c0c0d1

package/dist/src/config/extensions/update.test.js

@@ -7,13 +7,14 @@ import { vi } from 'vitest';
 import * as fs from 'node:fs';
 import * as os from 'node:os';
 import * as path from 'node:path';
-import { EXTENSIONS_CONFIG_FILENAME, INSTALL_METADATA_FILENAME, loadExtension, } from '../extension.js';
 import { checkForAllExtensionUpdates, updateExtension } from './update.js';
 import { GEMINI_DIR } from '@google/gemini-cli-core';
 import { isWorkspaceTrusted } from '../trustedFolders.js';
 import { ExtensionUpdateState } from '../../ui/state/extensions.js';
 import { createExtension } from '../../test-utils/createExtension.js';
-import { ExtensionEnablementManager } from './extensionEnablement.js';
+import { EXTENSIONS_CONFIG_FILENAME, INSTALL_METADATA_FILENAME, } from './variables.js';
+import { ExtensionManager } from '../extension-manager.js';
+import { loadSettings } from '../settings.js';
 const mockGit = {
     clone: vi.fn(),
     getRemotes: vi.fn(),
@@ -61,6 +62,9 @@ describe('update tests', () => {
     let tempHomeDir;
     let tempWorkspaceDir;
     let userExtensionsDir;
+    let extensionManager;
+    let mockRequestConsent;
+    let mockPromptForSettings;
     beforeEach(() => {
         tempHomeDir = fs.mkdtempSync(path.join(os.tmpdir(), 'gemini-cli-test-home-'));
         tempWorkspaceDir = fs.mkdtempSync(path.join(tempHomeDir, 'gemini-cli-test-workspace-'));
@@ -75,6 +79,16 @@ describe('update tests', () => {
         });
         vi.spyOn(process, 'cwd').mockReturnValue(tempWorkspaceDir);
         Object.values(mockGit).forEach((fn) => fn.mockReset());
+        mockRequestConsent = vi.fn();
+        mockRequestConsent.mockResolvedValue(true);
+        mockPromptForSettings = vi.fn();
+        mockPromptForSettings.mockResolvedValue('');
+        extensionManager = new ExtensionManager({
+            workspaceDir: tempWorkspaceDir,
+            requestConsent: mockRequestConsent,
+            requestSetting: mockPromptForSettings,
+            loadedSettings: loadSettings(tempWorkspaceDir),
+        });
     });
     afterEach(() => {
         fs.rmSync(tempHomeDir, { recursive: true, force: true });
@@ -96,13 +110,8 @@ describe('update tests', () => {
                 fs.writeFileSync(path.join(mockGit.path(), destination, EXTENSIONS_CONFIG_FILENAME), JSON.stringify({ name: extensionName, version: '1.1.0' }));
             });
             mockGit.getRemotes.mockResolvedValue([{ name: 'origin' }]);
-            const extensionEnablementManager = new ExtensionEnablementManager();
-            const extension = loadExtension({
-                extensionDir: targetExtDir,
-                workspaceDir: tempWorkspaceDir,
-                extensionEnablementManager,
-            });
-            const updateInfo = await updateExtension(extension, extensionEnablementManager, tempHomeDir, async (_) => true, ExtensionUpdateState.UPDATE_AVAILABLE, () => { });
+            const extension = extensionManager.loadExtension(targetExtDir);
+            const updateInfo = await updateExtension(extension, extensionManager, ExtensionUpdateState.UPDATE_AVAILABLE, () => { });
             expect(updateInfo).toEqual({
                 name: 'gemini-extensions',
                 originalVersion: '1.0.0',
@@ -130,13 +139,8 @@ describe('update tests', () => {
             });
             mockGit.getRemotes.mockResolvedValue([{ name: 'origin' }]);
             const dispatch = vi.fn();
-            const extensionEnablementManager = new ExtensionEnablementManager();
-            const extension = loadExtension({
-                extensionDir,
-                workspaceDir: tempWorkspaceDir,
-                extensionEnablementManager,
-            });
-            await updateExtension(extension, extensionEnablementManager, tempHomeDir, async (_) => true, ExtensionUpdateState.UPDATE_AVAILABLE, dispatch);
+            const extension = extensionManager.loadExtension(extensionDir);
+            await updateExtension(extension, extensionManager, ExtensionUpdateState.UPDATE_AVAILABLE, dispatch);
             expect(dispatch).toHaveBeenCalledWith({
                 type: 'SET_STATE',
                 payload: {
@@ -166,13 +170,8 @@ describe('update tests', () => {
             mockGit.clone.mockRejectedValue(new Error('Git clone failed'));
             mockGit.getRemotes.mockResolvedValue([{ name: 'origin' }]);
             const dispatch = vi.fn();
-            const extensionEnablementManager = new ExtensionEnablementManager();
-            const extension = loadExtension({
-                extensionDir,
-                workspaceDir: tempWorkspaceDir,
-                extensionEnablementManager,
-            });
-            await expect(updateExtension(extension, extensionEnablementManager, tempHomeDir, async (_) => true, ExtensionUpdateState.UPDATE_AVAILABLE, dispatch)).rejects.toThrow();
+            const extension = extensionManager.loadExtension(extensionDir);
+            await expect(updateExtension(extension, extensionManager, ExtensionUpdateState.UPDATE_AVAILABLE, dispatch)).rejects.toThrow();
             expect(dispatch).toHaveBeenCalledWith({
                 type: 'SET_STATE',
                 payload: {
@@ -200,19 +199,14 @@ describe('update tests', () => {
                     type: 'git',
                 },
             });
-            const extensionEnablementManager = new ExtensionEnablementManager();
-            const extension = loadExtension({
-                extensionDir,
-                workspaceDir: tempWorkspaceDir,
-                extensionEnablementManager,
-            });
+            const extension = extensionManager.loadExtension(extensionDir);
             mockGit.getRemotes.mockResolvedValue([
                 { name: 'origin', refs: { fetch: 'https://some.git/repo' } },
             ]);
             mockGit.listRemote.mockResolvedValue('remoteHash	HEAD');
             mockGit.revparse.mockResolvedValue('localHash');
             const dispatch = vi.fn();
-            await checkForAllExtensionUpdates([extension], extensionEnablementManager, dispatch, tempWorkspaceDir);
+            await checkForAllExtensionUpdates([extension], extensionManager, dispatch);
             expect(dispatch).toHaveBeenCalledWith({
                 type: 'SET_STATE',
                 payload: {
@@ -231,19 +225,14 @@ describe('update tests', () => {
                     type: 'git',
                 },
             });
-            const extensionEnablementManager = new ExtensionEnablementManager();
-            const extension = loadExtension({
-                extensionDir,
-                workspaceDir: tempWorkspaceDir,
-                extensionEnablementManager,
-            });
+            const extension = extensionManager.loadExtension(extensionDir);
             mockGit.getRemotes.mockResolvedValue([
                 { name: 'origin', refs: { fetch: 'https://some.git/repo' } },
             ]);
             mockGit.listRemote.mockResolvedValue('sameHash	HEAD');
             mockGit.revparse.mockResolvedValue('sameHash');
             const dispatch = vi.fn();
-            await checkForAllExtensionUpdates([extension], extensionEnablementManager, dispatch, tempWorkspaceDir);
+            await checkForAllExtensionUpdates([extension], extensionManager, dispatch);
             expect(dispatch).toHaveBeenCalledWith({
                 type: 'SET_STATE',
                 payload: {
@@ -265,14 +254,9 @@ describe('update tests', () => {
                 version: '1.0.0',
                 installMetadata: { source: sourceExtensionDir, type: 'local' },
             });
-            const extensionEnablementManager = new ExtensionEnablementManager();
-            const extension = loadExtension({
-                extensionDir: installedExtensionDir,
-                workspaceDir: tempWorkspaceDir,
-                extensionEnablementManager,
-            });
+            const extension = extensionManager.loadExtension(installedExtensionDir);
             const dispatch = vi.fn();
-            await checkForAllExtensionUpdates([extension], extensionEnablementManager, dispatch, tempWorkspaceDir);
+            await checkForAllExtensionUpdates([extension], extensionManager, dispatch);
             expect(dispatch).toHaveBeenCalledWith({
                 type: 'SET_STATE',
                 payload: {
@@ -294,14 +278,9 @@ describe('update tests', () => {
                 version: '1.0.0',
                 installMetadata: { source: sourceExtensionDir, type: 'local' },
             });
-            const extensionEnablementManager = new ExtensionEnablementManager();
-            const extension = loadExtension({
-                extensionDir: installedExtensionDir,
-                workspaceDir: tempWorkspaceDir,
-                extensionEnablementManager,
-            });
+            const extension = extensionManager.loadExtension(installedExtensionDir);
             const dispatch = vi.fn();
-            await checkForAllExtensionUpdates([extension], extensionEnablementManager, dispatch, tempWorkspaceDir);
+            await checkForAllExtensionUpdates([extension], extensionManager, dispatch);
             expect(dispatch).toHaveBeenCalledWith({
                 type: 'SET_STATE',
                 payload: {
@@ -320,15 +299,10 @@ describe('update tests', () => {
                     type: 'git',
                 },
             });
-            const extensionEnablementManager = new ExtensionEnablementManager();
-            const extension = loadExtension({
-                extensionDir,
-                workspaceDir: tempWorkspaceDir,
-                extensionEnablementManager,
-            });
+            const extension = extensionManager.loadExtension(extensionDir);
             mockGit.getRemotes.mockRejectedValue(new Error('Git error'));
             const dispatch = vi.fn();
-            await checkForAllExtensionUpdates([extension], extensionEnablementManager, dispatch, tempWorkspaceDir);
+            await checkForAllExtensionUpdates([extension], extensionManager, dispatch);
             expect(dispatch).toHaveBeenCalledWith({
                 type: 'SET_STATE',
                 payload: {

package/dist/src/config/extensions/update.test.js.map

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package/dist/src/config/extensions/variableSchema.d.ts

@@ -3,7 +3,6 @@
  * Copyright 2025 Google LLC
  * SPDX-License-Identifier: Apache-2.0
  */
-import type { ExtensionEnablementManager } from './extensionEnablement.js';
 export interface VariableDefinition {
     type: 'string';
     description: string;
@@ -13,11 +12,6 @@ export interface VariableDefinition {
 export interface VariableSchema {
     [key: string]: VariableDefinition;
 }
-export interface LoadExtensionContext {
-    extensionDir: string;
-    workspaceDir: string;
-    extensionEnablementManager: ExtensionEnablementManager;
-}
 export declare const VARIABLE_SCHEMA: {
     readonly extensionPath: {
         readonly type: "string";

package/dist/src/config/extensions/variableSchema.js.map

@@ -1 +1 @@
-{"version":3,"file":"variableSchema.js","sourceRoot":"","sources":["../../../../src/config/extensions/variableSchema.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAqBH,MAAM,yBAAyB,GAAG;IAChC,IAAI,EAAE,QAAQ;IACd,WAAW,EAAE,qBAAqB;CAC1B,CAAC;AAEX,MAAM,CAAC,MAAM,eAAe,GAAG;IAC7B,aAAa,EAAE;QACb,IAAI,EAAE,QAAQ;QACd,WAAW,EAAE,8CAA8C;KAC5D;IACD,aAAa,EAAE;QACb,IAAI,EAAE,QAAQ;QACd,WAAW,EAAE,6CAA6C;KAC3D;IACD,GAAG,EAAE,yBAAyB;IAC9B,aAAa,EAAE,yBAAyB;CAChC,CAAC"}
+{"version":3,"file":"variableSchema.js","sourceRoot":"","sources":["../../../../src/config/extensions/variableSchema.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAaH,MAAM,yBAAyB,GAAG;IAChC,IAAI,EAAE,QAAQ;IACd,WAAW,EAAE,qBAAqB;CAC1B,CAAC;AAEX,MAAM,CAAC,MAAM,eAAe,GAAG;IAC7B,aAAa,EAAE;QACb,IAAI,EAAE,QAAQ;QACd,WAAW,EAAE,8CAA8C;KAC5D;IACD,aAAa,EAAE;QACb,IAAI,EAAE,QAAQ;QACd,WAAW,EAAE,6CAA6C;KAC3D;IACD,GAAG,EAAE,yBAAyB;IAC9B,aAAa,EAAE,yBAAyB;CAChC,CAAC"}

package/dist/src/config/extensions/variables.d.ts

@@ -4,6 +4,10 @@
  * SPDX-License-Identifier: Apache-2.0
  */
 import { type VariableSchema, VARIABLE_SCHEMA } from './variableSchema.js';
+export declare const EXTENSIONS_DIRECTORY_NAME: string;
+export declare const EXTENSIONS_CONFIG_FILENAME = "gemini-extension.json";
+export declare const INSTALL_METADATA_FILENAME = ".gemini-extension-install.json";
+export declare const EXTENSION_SETTINGS_FILENAME = ".env";
 export type JsonObject = {
     [key: string]: JsonValue;
 };

package/dist/src/config/extensions/variables.js

@@ -3,7 +3,13 @@
  * Copyright 2025 Google LLC
  * SPDX-License-Identifier: Apache-2.0
  */
+import * as path from 'node:path';
 import { VARIABLE_SCHEMA } from './variableSchema.js';
+import { GEMINI_DIR } from '@google/gemini-cli-core';
+export const EXTENSIONS_DIRECTORY_NAME = path.join(GEMINI_DIR, 'extensions');
+export const EXTENSIONS_CONFIG_FILENAME = 'gemini-extension.json';
+export const INSTALL_METADATA_FILENAME = '.gemini-extension-install.json';
+export const EXTENSION_SETTINGS_FILENAME = '.env';
 export function validateVariables(variables, schema) {
     for (const key in schema) {
         const definition = schema[key];

package/dist/src/config/extensions/variables.js.map

@@ -1 +1 @@
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+{"version":3,"file":"variables.js","sourceRoot":"","sources":["../../../../src/config/extensions/variables.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAClC,OAAO,EAAuB,eAAe,EAAE,MAAM,qBAAqB,CAAC;AAC3E,OAAO,EAAE,UAAU,EAAE,MAAM,yBAAyB,CAAC;AAErD,MAAM,CAAC,MAAM,yBAAyB,GAAG,IAAI,CAAC,IAAI,CAAC,UAAU,EAAE,YAAY,CAAC,CAAC;AAC7E,MAAM,CAAC,MAAM,0BAA0B,GAAG,uBAAuB,CAAC;AAClE,MAAM,CAAC,MAAM,yBAAyB,GAAG,gCAAgC,CAAC;AAC1E,MAAM,CAAC,MAAM,2BAA2B,GAAG,MAAM,CAAC;AAgBlD,MAAM,UAAU,iBAAiB,CAC/B,SAA0B,EAC1B,MAAsB;IAEtB,KAAK,MAAM,GAAG,IAAI,MAAM,EAAE,CAAC;QACzB,MAAM,UAAU,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC;QAC/B,IAAI,UAAU,CAAC,QAAQ,IAAI,CAAC,SAAS,CAAC,GAA4B,CAAC,EAAE,CAAC;YACpE,MAAM,IAAI,KAAK,CAAC,8BAA8B,GAAG,EAAE,CAAC,CAAC;QACvD,CAAC;IACH,CAAC;AACH,CAAC;AAED,MAAM,UAAU,aAAa,CAAC,GAAW,EAAE,OAAwB;IACjE,iBAAiB,CAAC,OAAO,EAAE,eAAe,CAAC,CAAC;IAC5C,MAAM,KAAK,GAAG,YAAY,CAAC;IAC3B,OAAO,GAAG,CAAC,OAAO,CAAC,KAAK,EAAE,CAAC,KAAK,EAAE,GAAG,EAAE,EAAE,CACvC,OAAO,CAAC,GAA4B,CAAC,IAAI,IAAI;QAC3C,CAAC,CAAC,KAAK;QACP,CAAC,CAAE,OAAO,CAAC,GAA4B,CAAY,CACtD,CAAC;AACJ,CAAC;AAED,MAAM,UAAU,yBAAyB,CACvC,GAAc,EACd,MAAuB;IAEvB,IAAI,OAAO,GAAG,KAAK,QAAQ,EAAE,CAAC;QAC5B,OAAO,aAAa,CAAC,GAAG,EAAE,MAAM,CAAC,CAAC;IACpC,CAAC;IACD,IAAI,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC;QACvB,OAAO,GAAG,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,yBAAyB,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC,CAAC;IACpE,CAAC;IACD,IAAI,OAAO,GAAG,KAAK,QAAQ,IAAI,GAAG,KAAK,IAAI,EAAE,CAAC;QAC5C,MAAM,MAAM,GAAe,EAAE,CAAC;QAC9B,KAAK,MAAM,GAAG,IAAI,GAAG,EAAE,CAAC;YACtB,IAAI,MAAM,CAAC,SAAS,CAAC,cAAc,CAAC,IAAI,CAAC,GAAG,EAAE,GAAG,CAAC,EAAE,CAAC;gBACnD,MAAM,CAAC,GAAG,CAAC,GAAG,yBAAyB,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,MAAM,CAAC,CAAC;YAC5D,CAAC;QACH,CAAC;QACD,OAAO,MAAM,CAAC;IAChB,CAAC;IACD,OAAO,GAAG,CAAC;AACb,CAAC"}

package/dist/src/config/settings.d.ts

@@ -4,6 +4,7 @@
  * SPDX-License-Identifier: Apache-2.0
  */
 import { type Settings, type MemoryImportFormat } from './settingsSchema.js';
+import type { ExtensionManager } from './extension-manager.js';
 export type { Settings, MemoryImportFormat };
 export declare const USER_SETTINGS_PATH: string;
 export declare const USER_SETTINGS_DIR: string;
@@ -70,5 +71,5 @@ export declare function loadEnvironment(settings: Settings): void;
  * Project settings override user settings.
  */
 export declare function loadSettings(workspaceDir?: string): LoadedSettings;
-export declare function migrateDeprecatedSettings(loadedSettings: LoadedSettings, workspaceDir?: string): void;
+export declare function migrateDeprecatedSettings(loadedSettings: LoadedSettings, extensionManager: ExtensionManager): void;
 export declare function saveSettings(settingsFile: SettingsFile): void;

package/dist/src/config/settings.js

@@ -8,7 +8,7 @@ import * as path from 'node:path';
 import { homedir, platform } from 'node:os';
 import * as dotenv from 'dotenv';
 import process from 'node:process';
-import { debugLogger, FatalConfigError, GEMINI_DIR, getErrorMessage, Storage, } from '@google/gemini-cli-core';
+import { debugLogger, FatalConfigError, GEMINI_DIR, getErrorMessage, Storage, coreEvents, } from '@google/gemini-cli-core';
 import stripJsonComments from 'strip-json-comments';
 import { DefaultLight } from '../ui/themes/default-light.js';
 import { DefaultDark } from '../ui/themes/default.js';
@@ -17,8 +17,6 @@ import { getSettingsSchema, } from './settingsSchema.js';
 import { resolveEnvVarsInObject } from '../utils/envVarResolver.js';
 import { customDeepMerge } from '../utils/deepMerge.js';
 import { updateSettingsFilePreservingFormat } from '../utils/commentJson.js';
-import { disableExtension } from './extension.js';
-import { ExtensionEnablementManager } from './extensions/extensionEnablement.js';
 function getMergeStrategyForPath(path) {
     let current = undefined;
     let currentSchema = getSettingsSchema();
@@ -533,14 +531,13 @@ export function loadSettings(workspaceDir = process.cwd()) {
         rawJson: workspaceResult.rawJson,
     }, isTrusted, migratedInMemorScopes);
 }
-export function migrateDeprecatedSettings(loadedSettings, workspaceDir = process.cwd()) {
+export function migrateDeprecatedSettings(loadedSettings, extensionManager) {
     const processScope = (scope) => {
         const settings = loadedSettings.forScope(scope).settings;
         if (settings.extensions?.disabled) {
             debugLogger.log(`Migrating deprecated extensions.disabled settings from ${scope} settings...`);
-            const extensionEnablementManager = new ExtensionEnablementManager();
             for (const extension of settings.extensions.disabled ?? []) {
-                disableExtension(extension, scope, extensionEnablementManager, workspaceDir);
+                extensionManager.disableExtension(extension, scope);
             }
             const newExtensionsValue = { ...settings.extensions };
             newExtensionsValue.disabled = undefined;
@@ -565,7 +562,7 @@ export function saveSettings(settingsFile) {
         updateSettingsFilePreservingFormat(settingsFile.path, settingsToSave);
     }
     catch (error) {
-        console.error('Error saving user settings file:', error);
+        coreEvents.emitFeedback('error', 'There was an error saving your latest settings changes.', error);
     }
 }
 //# sourceMappingURL=settings.js.map

package/dist/src/config/settings.js.map

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package/dist/src/config/settings.test.js

@@ -35,12 +35,12 @@ import { describe, it, expect, vi, beforeEach, afterEach, } from 'vitest';
 import * as fs from 'node:fs'; // fs will be mocked separately
 import stripJsonComments from 'strip-json-comments'; // Will be mocked separately
 import { isWorkspaceTrusted } from './trustedFolders.js';
-import { disableExtension, ExtensionStorage } from './extension.js';
 // These imports will get the versions from the vi.mock('./settings.js', ...) factory.
 import { loadSettings, USER_SETTINGS_PATH, // This IS the mocked path.
-getSystemSettingsPath, getSystemDefaultsPath, migrateSettingsToV1, needsMigration, loadEnvironment, migrateDeprecatedSettings, SettingScope, } from './settings.js';
-import { FatalConfigError, GEMINI_DIR, Storage } from '@google/gemini-cli-core';
-import { ExtensionEnablementManager } from './extensions/extensionEnablement.js';
+getSystemSettingsPath, getSystemDefaultsPath, migrateSettingsToV1, needsMigration, loadEnvironment, migrateDeprecatedSettings, SettingScope, saveSettings, } from './settings.js';
+import { FatalConfigError, GEMINI_DIR } from '@google/gemini-cli-core';
+import { ExtensionManager } from './extension-manager.js';
+import { updateSettingsFilePreservingFormat } from '../utils/commentJson.js';
 const MOCK_WORKSPACE_DIR = '/mock/workspace';
 // Use the (mocked) GEMINI_DIR for consistency
 const MOCK_WORKSPACE_SETTINGS_PATH = pathActual.join(MOCK_WORKSPACE_DIR, GEMINI_DIR, 'settings.json');
@@ -58,6 +58,19 @@ vi.mock('fs', async (importOriginal) => {
     };
 });
 vi.mock('./extension.js');
+const mockCoreEvents = vi.hoisted(() => ({
+    emitFeedback: vi.fn(),
+}));
+vi.mock('@google/gemini-cli-core', async (importOriginal) => {
+    const actual = await importOriginal();
+    return {
+        ...actual,
+        coreEvents: mockCoreEvents,
+    };
+});
+vi.mock('../utils/commentJson.js', () => ({
+    updateSettingsFilePreservingFormat: vi.fn(),
+}));
 vi.mock('strip-json-comments', () => ({
     default: vi.fn((content) => content),
 }));
@@ -481,6 +494,35 @@ describe('Settings Loading and Merging', () => {
             const settings = loadSettings(MOCK_WORKSPACE_DIR);
             expect(settings.merged.security?.folderTrust?.enabled).toBe(true); // System setting should be used
         });
+        it('should not allow user or workspace to override system disableYoloMode', () => {
+            mockFsExistsSync.mockReturnValue(true);
+            const userSettingsContent = {
+                security: {
+                    disableYoloMode: false,
+                },
+            };
+            const workspaceSettingsContent = {
+                security: {
+                    disableYoloMode: false, // This should be ignored
+                },
+            };
+            const systemSettingsContent = {
+                security: {
+                    disableYoloMode: true,
+                },
+            };
+            fs.readFileSync.mockImplementation((p) => {
+                if (p === getSystemSettingsPath())
+                    return JSON.stringify(systemSettingsContent);
+                if (p === USER_SETTINGS_PATH)
+                    return JSON.stringify(userSettingsContent);
+                if (p === MOCK_WORKSPACE_SETTINGS_PATH)
+                    return JSON.stringify(workspaceSettingsContent);
+                return '{}';
+            });
+            const settings = loadSettings(MOCK_WORKSPACE_DIR);
+            expect(settings.merged.security?.disableYoloMode).toBe(true); // System setting should be used
+        });
         it('should handle contextFileName correctly when only in user settings', () => {
             mockFsExistsSync.mockImplementation((p) => p === USER_SETTINGS_PATH);
             const userSettingsContent = { context: { fileName: 'CUSTOM.md' } };
@@ -1857,14 +1899,12 @@ describe('Settings Loading and Merging', () => {
     describe('migrateDeprecatedSettings', () => {
         let mockFsExistsSync;
         let mockFsReadFileSync;
-        let mockDisableExtension;
         beforeEach(() => {
             vi.resetAllMocks();
             mockFsExistsSync = vi.mocked(fs.existsSync);
-            mockFsReadFileSync = vi.mocked(fs.readFileSync);
-            mockDisableExtension = vi.mocked(disableExtension);
-            vi.mocked(ExtensionStorage.getUserExtensionsDir).mockReturnValue(new Storage(osActual.homedir()).getExtensionsDir());
             mockFsExistsSync.mockReturnValue(true);
+            mockFsReadFileSync = vi.mocked(fs.readFileSync);
+            mockFsReadFileSync.mockReturnValue('{}');
             vi.mocked(isWorkspaceTrusted).mockReturnValue({
                 isTrusted: true,
                 source: undefined,
@@ -1893,13 +1933,21 @@ describe('Settings Loading and Merging', () => {
             });
             const loadedSettings = loadSettings(MOCK_WORKSPACE_DIR);
             const setValueSpy = vi.spyOn(loadedSettings, 'setValue');
-            migrateDeprecatedSettings(loadedSettings, MOCK_WORKSPACE_DIR);
+            const extensionManager = new ExtensionManager({
+                loadedSettings,
+                workspaceDir: MOCK_WORKSPACE_DIR,
+                requestConsent: vi.fn(),
+                requestSetting: vi.fn(),
+            });
+            const mockDisableExtension = vi.spyOn(extensionManager, 'disableExtension');
+            mockDisableExtension.mockImplementation(() => { });
+            migrateDeprecatedSettings(loadedSettings, extensionManager);
             // Check user settings migration
-            expect(mockDisableExtension).toHaveBeenCalledWith('user-ext-1', SettingScope.User, expect.any(ExtensionEnablementManager), MOCK_WORKSPACE_DIR);
-            expect(mockDisableExtension).toHaveBeenCalledWith('shared-ext', SettingScope.User, expect.any(ExtensionEnablementManager), MOCK_WORKSPACE_DIR);
+            expect(mockDisableExtension).toHaveBeenCalledWith('user-ext-1', SettingScope.User);
+            expect(mockDisableExtension).toHaveBeenCalledWith('shared-ext', SettingScope.User);
             // Check workspace settings migration
-            expect(mockDisableExtension).toHaveBeenCalledWith('workspace-ext-1', SettingScope.Workspace, expect.any(ExtensionEnablementManager), MOCK_WORKSPACE_DIR);
-            expect(mockDisableExtension).toHaveBeenCalledWith('shared-ext', SettingScope.Workspace, expect.any(ExtensionEnablementManager), MOCK_WORKSPACE_DIR);
+            expect(mockDisableExtension).toHaveBeenCalledWith('workspace-ext-1', SettingScope.Workspace);
+            expect(mockDisableExtension).toHaveBeenCalledWith('shared-ext', SettingScope.Workspace);
             // Check that setValue was called to remove the deprecated setting
             expect(setValueSpy).toHaveBeenCalledWith(SettingScope.User, 'extensions', {
                 disabled: undefined,
@@ -1926,10 +1974,61 @@ describe('Settings Loading and Merging', () => {
             });
             const loadedSettings = loadSettings(MOCK_WORKSPACE_DIR);
             const setValueSpy = vi.spyOn(loadedSettings, 'setValue');
-            migrateDeprecatedSettings(loadedSettings, MOCK_WORKSPACE_DIR);
+            const extensionManager = new ExtensionManager({
+                loadedSettings,
+                workspaceDir: MOCK_WORKSPACE_DIR,
+                requestConsent: vi.fn(),
+                requestSetting: vi.fn(),
+            });
+            const mockDisableExtension = vi.spyOn(extensionManager, 'disableExtension');
+            mockDisableExtension.mockImplementation(() => { });
+            migrateDeprecatedSettings(loadedSettings, extensionManager);
             expect(mockDisableExtension).not.toHaveBeenCalled();
             expect(setValueSpy).not.toHaveBeenCalled();
         });
     });
+    describe('saveSettings', () => {
+        it('should save settings using updateSettingsFilePreservingFormat', () => {
+            const mockUpdateSettings = vi.mocked(updateSettingsFilePreservingFormat);
+            const settingsFile = {
+                path: '/mock/settings.json',
+                settings: { ui: { theme: 'dark' } },
+                originalSettings: { ui: { theme: 'dark' } },
+            };
+            saveSettings(settingsFile);
+            expect(mockUpdateSettings).toHaveBeenCalledWith('/mock/settings.json', {
+                ui: { theme: 'dark' },
+            });
+        });
+        it('should create directory if it does not exist', () => {
+            const mockFsExistsSync = vi.mocked(fs.existsSync);
+            const mockFsMkdirSync = vi.mocked(fs.mkdirSync);
+            mockFsExistsSync.mockReturnValue(false);
+            const settingsFile = {
+                path: '/mock/new/dir/settings.json',
+                settings: {},
+                originalSettings: {},
+            };
+            saveSettings(settingsFile);
+            expect(mockFsExistsSync).toHaveBeenCalledWith('/mock/new/dir');
+            expect(mockFsMkdirSync).toHaveBeenCalledWith('/mock/new/dir', {
+                recursive: true,
+            });
+        });
+        it('should emit error feedback if saving fails', () => {
+            const mockUpdateSettings = vi.mocked(updateSettingsFilePreservingFormat);
+            const error = new Error('Write failed');
+            mockUpdateSettings.mockImplementation(() => {
+                throw error;
+            });
+            const settingsFile = {
+                path: '/mock/settings.json',
+                settings: {},
+                originalSettings: {},
+            };
+            saveSettings(settingsFile);
+            expect(mockCoreEvents.emitFeedback).toHaveBeenCalledWith('error', 'There was an error saving your latest settings changes.', error);
+        });
+    });
 });
 //# sourceMappingURL=settings.test.js.map