@gmod/cram 6.0.0 → 7.0.0

package/src/htscodecs-wasm.ts

@@ -0,0 +1,210 @@
+import createHtsCodecsModule from './wasm/htscodecs.js'
+
+type HtsCodecsModule = Awaited<ReturnType<typeof createHtsCodecsModule>>
+
+let moduleInstance: HtsCodecsModule | null = null
+let modulePromise: Promise<HtsCodecsModule> | null = null
+
+async function getModule() {
+  if (moduleInstance) {
+    return moduleInstance
+  }
+  if (!modulePromise) {
+    modulePromise = createHtsCodecsModule().then(m => {
+      moduleInstance = m
+      return m
+    })
+  }
+  return modulePromise
+}
+
+function copyToWasm(module: HtsCodecsModule, data: Uint8Array) {
+  const ptr = module._malloc(data.length)
+  module.HEAPU8.set(data, ptr)
+  return ptr
+}
+
+function copyFromWasm(module: HtsCodecsModule, ptr: number, size: number) {
+  const result = new Uint8Array(size)
+  result.set(module.HEAPU8.subarray(ptr, ptr + size))
+  return result
+}
+
+export async function rans_uncompress(input: Uint8Array) {
+  // Handle empty input - C implementation returns NULL for in_size < 9
+  if (input.length === 0) {
+    return new Uint8Array(0)
+  }
+
+  const module = await getModule()
+
+  const inPtr = copyToWasm(module, input)
+  const outSizePtr = module._malloc(4)
+
+  try {
+    const outPtr = module._rans_uncompress(inPtr, input.length, outSizePtr)
+    if (outPtr === 0) {
+      throw new Error('rans_uncompress failed')
+    }
+
+    const outSize = module.getValue(outSizePtr, 'i32')
+    const result = copyFromWasm(module, outPtr, outSize)
+    module._free(outPtr)
+    return result
+  } finally {
+    module._free(inPtr)
+    module._free(outSizePtr)
+  }
+}
+
+export async function r4x16_uncompress(input: Uint8Array) {
+  const module = await getModule()
+
+  const inPtr = copyToWasm(module, input)
+  const outSizePtr = module._malloc(4)
+
+  try {
+    const outPtr = module._rans_uncompress_4x16(inPtr, input.length, outSizePtr)
+    if (outPtr === 0) {
+      throw new Error('rans_uncompress_4x16 failed')
+    }
+
+    const outSize = module.getValue(outSizePtr, 'i32')
+    const result = copyFromWasm(module, outPtr, outSize)
+    module._free(outPtr)
+    return result
+  } finally {
+    module._free(inPtr)
+    module._free(outSizePtr)
+  }
+}
+
+export async function arith_uncompress(input: Uint8Array) {
+  const module = await getModule()
+
+  const inPtr = copyToWasm(module, input)
+  const outSizePtr = module._malloc(4)
+
+  try {
+    const outPtr = module._arith_uncompress(inPtr, input.length, outSizePtr)
+    if (outPtr === 0) {
+      throw new Error('arith_uncompress failed')
+    }
+
+    const outSize = module.getValue(outSizePtr, 'i32')
+    const result = copyFromWasm(module, outPtr, outSize)
+    module._free(outPtr)
+    return result
+  } finally {
+    module._free(inPtr)
+    module._free(outSizePtr)
+  }
+}
+
+export async function fqzcomp_uncompress(input: Uint8Array) {
+  const module = await getModule()
+
+  const inPtr = copyToWasm(module, input)
+  const outSizePtr = module._malloc(4)
+  const lenPtr = module._malloc(4)
+
+  try {
+    const outPtr = module._fqz_decompress(
+      inPtr,
+      input.length,
+      outSizePtr,
+      lenPtr,
+    )
+    if (outPtr === 0) {
+      throw new Error('fqz_decompress failed')
+    }
+
+    const outSize = module.getValue(outSizePtr, 'i32')
+    const result = copyFromWasm(module, outPtr, outSize)
+    module._free(outPtr)
+    return result
+  } finally {
+    module._free(inPtr)
+    module._free(outSizePtr)
+    module._free(lenPtr)
+  }
+}
+
+export async function zlib_uncompress(input: Uint8Array) {
+  if (input.length === 0) {
+    return new Uint8Array(0)
+  }
+
+  const module = await getModule()
+
+  const inPtr = copyToWasm(module, input)
+  const outSizePtr = module._malloc(4)
+
+  try {
+    const outPtr = module._zlib_uncompress(inPtr, input.length, outSizePtr)
+    if (outPtr === 0) {
+      throw new Error('zlib_uncompress failed')
+    }
+
+    const outSize = module.getValue(outSizePtr, 'i32')
+    const result = copyFromWasm(module, outPtr, outSize)
+    module._free(outPtr)
+    return result
+  } finally {
+    module._free(inPtr)
+    module._free(outSizePtr)
+  }
+}
+
+export async function bz2_uncompress(input: Uint8Array, expectedSize: number) {
+  if (input.length === 0) {
+    return new Uint8Array(0)
+  }
+
+  const module = await getModule()
+
+  const inPtr = copyToWasm(module, input)
+  const outSizePtr = module._malloc(4)
+
+  try {
+    const outPtr = module._bz2_uncompress(
+      inPtr,
+      input.length,
+      expectedSize,
+      outSizePtr,
+    )
+    if (outPtr === 0) {
+      throw new Error('bz2_uncompress failed')
+    }
+
+    const outSize = module.getValue(outSizePtr, 'i32')
+    const result = copyFromWasm(module, outPtr, outSize)
+    module._free(outPtr)
+    return result
+  } finally {
+    module._free(inPtr)
+    module._free(outSizePtr)
+  }
+}
+
+export async function tok3_uncompress(input: Uint8Array) {
+  const module = await getModule()
+
+  const inPtr = copyToWasm(module, input)
+  const outSizePtr = module._malloc(4)
+
+  try {
+    const outPtr = module._tok3_decode_names(inPtr, input.length, outSizePtr)
+    if (outPtr === 0) {
+      throw new Error('tok3_decode_names failed')
+    }
+
+    const outSize = module.getValue(outSizePtr, 'i32')
+    const result = copyFromWasm(module, outPtr, outSize)
+    module._free(outPtr)
+    return result
+  } finally {
+    module._free(inPtr)
+    module._free(outSizePtr)
+  }
+}

package/src/unzip.ts

@@ -1,5 +1,5 @@
-import { inflate } from 'pako-esm2'
+import { zlib_uncompress } from './htscodecs-wasm.ts'
 
-export function unzip(input: Uint8Array): Uint8Array {
-  return inflate(input, undefined)
+export async function unzip(input: Uint8Array): Promise<Uint8Array> {
+  return zlib_uncompress(input)
 }

package/src/wasm/htscodecs.d.ts

@@ -0,0 +1,58 @@
+interface HtsCodecsModule {
+  _malloc: (size: number) => number
+  _free: (ptr: number) => void
+  _rans_uncompress: (
+    inPtr: number,
+    inSize: number,
+    outSizePtr: number,
+  ) => number
+  _rans_uncompress_4x16: (
+    inPtr: number,
+    inSize: number,
+    outSizePtr: number,
+  ) => number
+  _arith_uncompress: (
+    inPtr: number,
+    inSize: number,
+    outSizePtr: number,
+  ) => number
+  _fqz_decompress: (
+    inPtr: number,
+    inSize: number,
+    outSizePtr: number,
+    lenPtr: number,
+  ) => number
+  _tok3_decode_names: (
+    inPtr: number,
+    inSize: number,
+    outSizePtr: number,
+  ) => number
+  _bz2_uncompress: (
+    inPtr: number,
+    inSize: number,
+    expectedSize: number,
+    outSizePtr: number,
+  ) => number
+  _zlib_uncompress: (
+    inPtr: number,
+    inSize: number,
+    outSizePtr: number,
+  ) => number
+  ccall: (
+    name: string,
+    returnType: string | null,
+    argTypes: string[],
+    args: unknown[],
+  ) => unknown
+  cwrap: (
+    name: string,
+    returnType: string | null,
+    argTypes: string[],
+  ) => (...args: unknown[]) => unknown
+  getValue: (ptr: number, type: string) => number
+  setValue: (ptr: number, value: number, type: string) => void
+  HEAPU8: Uint8Array
+  HEAP32: Int32Array
+}
+
+export default function createHtsCodecsModule(): Promise<HtsCodecsModule>

package/dist/htscodecs/arith_gen.d.ts

@@ -1,16 +0,0 @@
-import IOStream from './iostream.ts';
-export default class RangeCoderGen {
-    stream: IOStream;
-    decode(src: Uint8Array): Uint8Array<any>;
-    decodeStream(stream: IOStream, n_out?: number): Uint8Array<any>;
-    decode0(stream: any, n_out: any): Uint8Array<any>;
-    decode1(stream: any, n_out: any): Uint8Array<any>;
-    decodeExt(stream: any, n_out: any): any;
-    decodeRLE0(stream: any, n_out: any): Uint8Array<any>;
-    decodeRLE1(stream: any, n_out: any): Uint8Array<any>;
-    decodePackMeta(stream: any): any[];
-    decodePack(data: any, M: any, len: any): any;
-    packMeta(src: any): (number | any[] | IOStream)[];
-    decodeStripe(stream: any, len: any): Uint8Array<any>;
-    decodeCat(stream: any, len: any): Uint8Array<any>;
-}

package/dist/htscodecs/arith_gen.js

@@ -1,323 +0,0 @@
-"use strict";
-/* eslint-disable no-var */
-// @ts-nocheck
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-/*
- * Copyright (c) 2019,2020 Genome Research Ltd.
- * Author(s): James Bonfield
- *
- * Redistribution and use in source and binary forms, with or without
- * modification, are permitted provided that the following conditions are met:
- *
- *    1. Redistributions of source code must retain the above copyright notice,
- *       this list of conditions and the following disclaimer.
- *
- *    2. Redistributions in binary form must reproduce the above
- *       copyright notice, this list of conditions and the following
- *       disclaimer in the documentation and/or other materials provided
- *       with the distribution.
- *
- *    3. Neither the names Genome Research Ltd and Wellcome Trust Sanger
- *       Institute nor the names of its contributors may be used to endorse
- *       or promote products derived from this software without specific
- *       prior written permission.
- *
- * THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS "AS
- * IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
- * TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
- * PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH
- * LTD OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
- * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
- * LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
- * DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
- * THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
- * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
- * OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
- */
-const index_ts_1 = require("../seek-bzip/index.js");
-const arith_sh_ts_1 = __importDefault(require("./arith_sh.js"));
-const byte_model_ts_1 = __importDefault(require("./byte_model.js"));
-const iostream_ts_1 = __importDefault(require("./iostream.js"));
-const ARITH_ORDER = 1;
-const ARITH_EXT = 4;
-const ARITH_STRIPE = 8;
-const ARITH_NOSIZE = 16;
-const ARITH_CAT = 32;
-const ARITH_RLE = 64;
-const ARITH_PACK = 128;
-class RangeCoderGen {
-    decode(src) {
-        this.stream = new iostream_ts_1.default(src);
-        return this.decodeStream(this.stream);
-    }
-    decodeStream(stream, n_out = 0) {
-        const flags = this.stream.ReadByte();
-        if (!(flags & ARITH_NOSIZE)) {
-            n_out = this.stream.ReadUint7();
-        }
-        let e_len = n_out;
-        const order = flags & ARITH_ORDER;
-        // 4-way recursion
-        if (flags & ARITH_STRIPE) {
-            return this.decodeStripe(this.stream, n_out);
-        }
-        // Meta data
-        if (flags & ARITH_PACK) {
-            var P;
-            [P, e_len] = this.decodePackMeta(this.stream);
-        }
-        // NOP, useful for tiny blocks
-        if (flags & ARITH_CAT) {
-            var data = this.decodeCat(this.stream, e_len);
-        }
-        // Entropy decode
-        else if (flags & ARITH_EXT) {
-            var data = this.decodeExt(this.stream, e_len);
-        }
-        else if (flags & ARITH_RLE) {
-            var data = order
-                ? this.decodeRLE1(this.stream, e_len)
-                : this.decodeRLE0(this.stream, e_len);
-        }
-        else {
-            var data = order
-                ? this.decode1(this.stream, e_len)
-                : this.decode0(this.stream, e_len);
-        }
-        // Transforms
-        if (flags & ARITH_PACK) {
-            data = this.decodePack(data, P, n_out);
-        }
-        return data;
-    }
-    // ----------------------------------------------------------------------
-    // Order-0 codec
-    decode0(stream, n_out) {
-        const output = new Uint8Array(n_out);
-        let max_sym = stream.ReadByte();
-        if (max_sym == 0) {
-            max_sym = 256;
-        }
-        const byte_model = new byte_model_ts_1.default(max_sym);
-        const rc = new arith_sh_ts_1.default(stream);
-        rc.RangeStartDecode(stream);
-        for (let i = 0; i < n_out; i++) {
-            output[i] = byte_model.ModelDecode(stream, rc);
-        }
-        return output;
-    }
-    // ----------------------------------------------------------------------
-    // Order-1 codec
-    decode1(stream, n_out) {
-        const output = new Uint8Array(n_out);
-        let max_sym = stream.ReadByte();
-        if (max_sym == 0) {
-            max_sym = 256;
-        }
-        const byte_model = new Array(max_sym);
-        for (var i = 0; i < max_sym; i++) {
-            byte_model[i] = new byte_model_ts_1.default(max_sym);
-        }
-        const rc = new arith_sh_ts_1.default(stream);
-        rc.RangeStartDecode(stream);
-        let last = 0;
-        for (var i = 0; i < n_out; i++) {
-            output[i] = byte_model[last].ModelDecode(stream, rc);
-            last = output[i];
-        }
-        return output;
-    }
-    // ----------------------------------------------------------------------
-    // External codec
-    decodeExt(stream, n_out) {
-        return (0, index_ts_1.decode)(stream.buf.slice(stream.pos));
-    }
-    // ----------------------------------------------------------------------
-    // Order-0 RLE codec
-    decodeRLE0(stream, n_out) {
-        const output = new Uint8Array(n_out);
-        let max_sym = stream.ReadByte();
-        if (max_sym == 0) {
-            max_sym = 256;
-        }
-        const model_lit = new byte_model_ts_1.default(max_sym);
-        const model_run = new Array(258);
-        for (var i = 0; i <= 257; i++) {
-            model_run[i] = new byte_model_ts_1.default(4);
-        }
-        const rc = new arith_sh_ts_1.default(stream);
-        rc.RangeStartDecode(stream);
-        var i = 0;
-        while (i < n_out) {
-            output[i] = model_lit.ModelDecode(stream, rc);
-            let part = model_run[output[i]].ModelDecode(stream, rc);
-            let run = part;
-            let rctx = 256;
-            while (part == 3) {
-                part = model_run[rctx].ModelDecode(stream, rc);
-                rctx = 257;
-                run += part;
-            }
-            for (let j = 1; j <= run; j++) {
-                output[i + j] = output[i];
-            }
-            i += run + 1;
-        }
-        return output;
-    }
-    // ----------------------------------------------------------------------
-    // Order-1 RLE codec
-    decodeRLE1(stream, n_out) {
-        const output = new Uint8Array(n_out);
-        let max_sym = stream.ReadByte();
-        if (max_sym == 0) {
-            max_sym = 256;
-        }
-        const model_lit = new Array(max_sym);
-        for (var i = 0; i < max_sym; i++) {
-            model_lit[i] = new byte_model_ts_1.default(max_sym);
-        }
-        const model_run = new Array(258);
-        for (var i = 0; i <= 257; i++) {
-            model_run[i] = new byte_model_ts_1.default(4);
-        }
-        const rc = new arith_sh_ts_1.default(stream);
-        rc.RangeStartDecode(stream);
-        let last = 0;
-        var i = 0;
-        while (i < n_out) {
-            output[i] = model_lit[last].ModelDecode(stream, rc);
-            last = output[i];
-            let part = model_run[output[i]].ModelDecode(stream, rc);
-            let run = part;
-            let rctx = 256;
-            while (part == 3) {
-                part = model_run[rctx].ModelDecode(stream, rc);
-                rctx = 257;
-                run += part;
-            }
-            for (let j = 1; j <= run; j++) {
-                output[i + j] = output[i];
-            }
-            i += run + 1;
-        }
-        return output;
-    }
-    // ----------------------------------------------------------------------
-    // Pack method
-    decodePackMeta(stream) {
-        this.nsym = stream.ReadByte();
-        const M = new Array(this.nsym);
-        for (let i = 0; i < this.nsym; i++) {
-            M[i] = stream.ReadByte();
-        }
-        const e_len = stream.ReadUint7(); // Could be derived data from nsym and n_out
-        return [M, e_len];
-    }
-    decodePack(data, M, len) {
-        const out = new Uint8Array(len);
-        if (this.nsym <= 1) {
-            // Constant value
-            for (var i = 0; i < len; i++) {
-                out[i] = M[0];
-            }
-        }
-        else if (this.nsym <= 2) {
-            // 1 bit per value
-            for (var i = 0, j = 0; i < len; i++) {
-                if (i % 8 == 0) {
-                    var v = data[j++];
-                }
-                out[i] = M[v & 1];
-                v >>= 1;
-            }
-        }
-        else if (this.nsym <= 4) {
-            // 2 bits per value
-            for (var i = 0, j = 0; i < len; i++) {
-                if (i % 4 == 0) {
-                    var v = data[j++];
-                }
-                out[i] = M[v & 3];
-                v >>= 2;
-            }
-        }
-        else if (this.nsym <= 16) {
-            // 4 bits per value
-            for (var i = 0, j = 0; i < len; i++) {
-                if (i % 2 == 0) {
-                    var v = data[j++];
-                }
-                out[i] = M[v & 15];
-                v >>= 4;
-            }
-        }
-        else {
-            // 8 bits per value: NOP
-            return data;
-        }
-        return out;
-    }
-    // Compute M array and return meta-data stream
-    packMeta(src) {
-        const stream = new iostream_ts_1.default('', 0, 1024);
-        // Count symbols
-        const M = new Array(256);
-        for (var i = 0; i < src.length; i++) {
-            M[src[i]] = 1;
-        }
-        // Write Map
-        for (var nsym = 0, i = 0; i < 256; i++) {
-            if (M[i]) {
-                M[i] = ++nsym;
-            }
-        } // map to 1..N
-        stream.WriteByte(nsym);
-        // FIXME: add check for nsym > 16?
-        // Or just accept it as an inefficient waste of time.
-        for (var i = 0; i < 256; i++) {
-            if (M[i]) {
-                stream.WriteByte(i); // adjust to 0..N-1
-                M[i]--;
-            }
-        }
-        return [stream, M, nsym];
-    }
-    decodeStripe(stream, len) {
-        const N = stream.ReadByte();
-        // Retrieve lengths
-        const clen = new Array(N);
-        const ulen = new Array(N);
-        for (var j = 0; j < N; j++) {
-            clen[j] = stream.ReadUint7();
-        }
-        // Decode streams
-        const T = new Array(N);
-        for (var j = 0; j < N; j++) {
-            ulen[j] = Math.floor(len / N) + (len % N > j);
-            T[j] = this.decodeStream(stream, ulen[j]);
-        }
-        // Transpose
-        const out = new Uint8Array(len);
-        for (var j = 0; j < N; j++) {
-            for (let i = 0; i < ulen[j]; i++) {
-                out[i * N + j] = T[j][i];
-            }
-        }
-        return out;
-    }
-    // ----------------------------------------------------------------------
-    // Cat method
-    decodeCat(stream, len) {
-        const out = new Uint8Array(len);
-        for (let i = 0; i < len; i++) {
-            out[i] = stream.ReadByte();
-        }
-        return out;
-    }
-}
-exports.default = RangeCoderGen;
-//# sourceMappingURL=arith_gen.js.map

package/dist/htscodecs/arith_gen.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"arith_gen.js","sourceRoot":"","sources":["../../src/htscodecs/arith_gen.ts"],"names":[],"mappings":";AAAA,2BAA2B;AAC3B,cAAc;;;;;AAEd;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA+BG;AAEH,oDAA8C;AAE9C,gEAAsC;AACtC,oEAAuC;AACvC,gEAAoC;AAGpC,MAAM,WAAW,GAAG,CAAC,CAAA;AACrB,MAAM,SAAS,GAAG,CAAC,CAAA;AACnB,MAAM,YAAY,GAAG,CAAC,CAAA;AACtB,MAAM,YAAY,GAAG,EAAE,CAAA;AACvB,MAAM,SAAS,GAAG,EAAE,CAAA;AACpB,MAAM,SAAS,GAAG,EAAE,CAAA;AACpB,MAAM,UAAU,GAAG,GAAG,CAAA;AAEtB,MAAqB,aAAa;IAEhC,MAAM,CAAC,GAAe;QACpB,IAAI,CAAC,MAAM,GAAG,IAAI,qBAAQ,CAAC,GAAG,CAAC,CAAA;QAC/B,OAAO,IAAI,CAAC,YAAY,CAAC,IAAI,CAAC,MAAM,CAAC,CAAA;IACvC,CAAC;IAED,YAAY,CAAC,MAAgB,EAAE,KAAK,GAAG,CAAC;QACtC,MAAM,KAAK,GAAG,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE,CAAA;QACpC,IAAI,CAAC,CAAC,KAAK,GAAG,YAAY,CAAC,EAAE,CAAC;YAC5B,KAAK,GAAG,IAAI,CAAC,MAAM,CAAC,SAAS,EAAE,CAAA;QACjC,CAAC;QACD,IAAI,KAAK,GAAG,KAAK,CAAA;QAEjB,MAAM,KAAK,GAAG,KAAK,GAAG,WAAW,CAAA;QAEjC,kBAAkB;QAClB,IAAI,KAAK,GAAG,YAAY,EAAE,CAAC;YACzB,OAAO,IAAI,CAAC,YAAY,CAAC,IAAI,CAAC,MAAM,EAAE,KAAK,CAAC,CAAA;QAC9C,CAAC;QAED,YAAY;QACZ,IAAI,KAAK,GAAG,UAAU,EAAE,CAAC;YACvB,IAAI,CAAC,CACJ;YAAA,CAAC,CAAC,EAAE,KAAK,CAAC,GAAG,IAAI,CAAC,cAAc,CAAC,IAAI,CAAC,MAAM,CAAC,CAAA;QAChD,CAAC;QAED,8BAA8B;QAC9B,IAAI,KAAK,GAAG,SAAS,EAAE,CAAC;YACtB,IAAI,IAAI,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,MAAM,EAAE,KAAK,CAAC,CAAA;QAC/C,CAAC;QACD,iBAAiB;aACZ,IAAI,KAAK,GAAG,SAAS,EAAE,CAAC;YAC3B,IAAI,IAAI,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,MAAM,EAAE,KAAK,CAAC,CAAA;QAC/C,CAAC;aAAM,IAAI,KAAK,GAAG,SAAS,EAAE,CAAC;YAC7B,IAAI,IAAI,GAAG,KAAK;gBACd,CAAC,CAAC,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,MAAM,EAAE,KAAK,CAAC;gBACrC,CAAC,CAAC,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,MAAM,EAAE,KAAK,CAAC,CAAA;QACzC,CAAC;aAAM,CAAC;YACN,IAAI,IAAI,GAAG,KAAK;gBACd,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,MAAM,EAAE,KAAK,CAAC;gBAClC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,MAAM,EAAE,KAAK,CAAC,CAAA;QACtC,CAAC;QAED,aAAa;QACb,IAAI,KAAK,GAAG,UAAU,EAAE,CAAC;YACvB,IAAI,GAAG,IAAI,CAAC,UAAU,CAAC,IAAI,EAAE,CAAC,EAAE,KAAK,CAAC,CAAA;QACxC,CAAC;QAED,OAAO,IAAI,CAAA;IACb,CAAC;IAED,yEAAyE;IACzE,gBAAgB;IAChB,OAAO,CAAC,MAAM,EAAE,KAAK;QACnB,MAAM,MAAM,GAAG,IAAI,UAAU,CAAC,KAAK,CAAC,CAAA;QAEpC,IAAI,OAAO,GAAG,MAAM,CAAC,QAAQ,EAAE,CAAA;QAC/B,IAAI,OAAO,IAAI,CAAC,EAAE,CAAC;YACjB,OAAO,GAAG,GAAG,CAAA;QACf,CAAC;QAED,MAAM,UAAU,GAAG,IAAI,uBAAS,CAAC,OAAO,CAAC,CAAA;QAEzC,MAAM,EAAE,GAAG,IAAI,qBAAU,CAAC,MAAM,CAAC,CAAA;QACjC,EAAE,CAAC,gBAAgB,CAAC,MAAM,CAAC,CAAA;QAE3B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,EAAE,CAAC,EAAE,EAAE,CAAC;YAC/B,MAAM,CAAC,CAAC,CAAC,GAAG,UAAU,CAAC,WAAW,CAAC,MAAM,EAAE,EAAE,CAAC,CAAA;QAChD,CAAC;QAED,OAAO,MAAM,CAAA;IACf,CAAC;IAED,yEAAyE;IACzE,gBAAgB;IAEhB,OAAO,CAAC,MAAM,EAAE,KAAK;QACnB,MAAM,MAAM,GAAG,IAAI,UAAU,CAAC,KAAK,CAAC,CAAA;QAEpC,IAAI,OAAO,GAAG,MAAM,CAAC,QAAQ,EAAE,CAAA;QAC/B,IAAI,OAAO,IAAI,CAAC,EAAE,CAAC;YACjB,OAAO,GAAG,GAAG,CAAA;QACf,CAAC;QAED,MAAM,UAAU,GAAG,IAAI,KAAK,CAAC,OAAO,CAAC,CAAA;QACrC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,OAAO,EAAE,CAAC,EAAE,EAAE,CAAC;YACjC,UAAU,CAAC,CAAC,CAAC,GAAG,IAAI,uBAAS,CAAC,OAAO,CAAC,CAAA;QACxC,CAAC;QAED,MAAM,EAAE,GAAG,IAAI,qBAAU,CAAC,MAAM,CAAC,CAAA;QACjC,EAAE,CAAC,gBAAgB,CAAC,MAAM,CAAC,CAAA;QAE3B,IAAI,IAAI,GAAG,CAAC,CAAA;QACZ,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,EAAE,CAAC,EAAE,EAAE,CAAC;YAC/B,MAAM,CAAC,CAAC,CAAC,GAAG,UAAU,CAAC,IAAI,CAAC,CAAC,WAAW,CAAC,MAAM,EAAE,EAAE,CAAC,CAAA;YACpD,IAAI,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;QAClB,CAAC;QAED,OAAO,MAAM,CAAA;IACf,CAAC;IAED,yEAAyE;IACzE,iBAAiB;IACjB,SAAS,CAAC,MAAM,EAAE,KAAK;QACrB,OAAO,IAAA,iBAAM,EAAC,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAA;IAC7C,CAAC;IAED,yEAAyE;IACzE,oBAAoB;IACpB,UAAU,CAAC,MAAM,EAAE,KAAK;QACtB,MAAM,MAAM,GAAG,IAAI,UAAU,CAAC,KAAK,CAAC,CAAA;QAEpC,IAAI,OAAO,GAAG,MAAM,CAAC,QAAQ,EAAE,CAAA;QAC/B,IAAI,OAAO,IAAI,CAAC,EAAE,CAAC;YACjB,OAAO,GAAG,GAAG,CAAA;QACf,CAAC;QAED,MAAM,SAAS,GAAG,IAAI,uBAAS,CAAC,OAAO,CAAC,CAAA;QACxC,MAAM,SAAS,GAAG,IAAI,KAAK,CAAC,GAAG,CAAC,CAAA;QAChC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC;YAC9B,SAAS,CAAC,CAAC,CAAC,GAAG,IAAI,uBAAS,CAAC,CAAC,CAAC,CAAA;QACjC,CAAC;QAED,MAAM,EAAE,GAAG,IAAI,qBAAU,CAAC,MAAM,CAAC,CAAA;QACjC,EAAE,CAAC,gBAAgB,CAAC,MAAM,CAAC,CAAA;QAE3B,IAAI,CAAC,GAAG,CAAC,CAAA;QACT,OAAO,CAAC,GAAG,KAAK,EAAE,CAAC;YACjB,MAAM,CAAC,CAAC,CAAC,GAAG,SAAS,CAAC,WAAW,CAAC,MAAM,EAAE,EAAE,CAAC,CAAA;YAC7C,IAAI,IAAI,GAAG,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,WAAW,CAAC,MAAM,EAAE,EAAE,CAAC,CAAA;YACvD,IAAI,GAAG,GAAG,IAAI,CAAA;YACd,IAAI,IAAI,GAAG,GAAG,CAAA;YACd,OAAO,IAAI,IAAI,CAAC,EAAE,CAAC;gBACjB,IAAI,GAAG,SAAS,CAAC,IAAI,CAAC,CAAC,WAAW,CAAC,MAAM,EAAE,EAAE,CAAC,CAAA;gBAC9C,IAAI,GAAG,GAAG,CAAA;gBACV,GAAG,IAAI,IAAI,CAAA;YACb,CAAC;YACD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC;gBAC9B,MAAM,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;YAC3B,CAAC;YACD,CAAC,IAAI,GAAG,GAAG,CAAC,CAAA;QACd,CAAC;QAED,OAAO,MAAM,CAAA;IACf,CAAC;IAED,yEAAyE;IACzE,oBAAoB;IAEpB,UAAU,CAAC,MAAM,EAAE,KAAK;QACtB,MAAM,MAAM,GAAG,IAAI,UAAU,CAAC,KAAK,CAAC,CAAA;QAEpC,IAAI,OAAO,GAAG,MAAM,CAAC,QAAQ,EAAE,CAAA;QAC/B,IAAI,OAAO,IAAI,CAAC,EAAE,CAAC;YACjB,OAAO,GAAG,GAA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package/dist/htscodecs/arith_sh.d.ts

@@ -1,9 +0,0 @@
-export default class RangeCoder {
-    constructor(src: any);
-    RangeStartDecode(src: any): void;
-    RangeGetFrequency(tot_freq: any): number;
-    RangeDecode(src: any, sym_low: any, sym_freq: any, tot_freq: any): void;
-    RangeShiftLow(dst: any): void;
-    RangeEncode(dst: any, sym_low: any, sym_freq: any, tot_freq: any): void;
-    RangeFinishEncode(dst: any): void;
-}