@gmod/cram 6.0.0 → 7.0.0

package/dist/cramFile/file.d.ts

@@ -72,7 +72,7 @@ export default class CramFile {
         _endPosition: number;
         _size: number;
     }>;
-    _uncompressPre(compressionMethod: CompressionMethod, inputBuffer: Uint8Array, uncompressedSize: number): Promise<any>;
-    _uncompress(compressionMethod: CompressionMethod, inputBuffer: Uint8Array, uncompressedSize: number): Promise<any>;
+    _uncompressPre(compressionMethod: CompressionMethod, inputBuffer: Uint8Array, uncompressedSize: number): Promise<Uint8Array<ArrayBufferLike>>;
+    _uncompress(compressionMethod: CompressionMethod, inputBuffer: Uint8Array, uncompressedSize: number): Promise<Uint8Array<ArrayBufferLike>>;
     readBlock(position: number): Promise<CramFileBlock>;
 }

package/dist/cramFile/file.js

@@ -41,12 +41,10 @@ const quick_lru_1 = __importDefault(require("quick-lru"));
 const errors_ts_1 = require("../errors.js");
 const htscodecs = __importStar(require("../htscodecs/index.js"));
 const io_ts_1 = require("../io.js");
-const index_ts_1 = __importDefault(require("../rans/index.js"));
 const sam_ts_1 = require("../sam.js");
 const util_ts_1 = require("./util.js");
-const index_ts_2 = require("../seek-bzip/index.js");
 const unzip_ts_1 = require("../unzip.js");
-const index_ts_3 = __importDefault(require("./container/index.js"));
+const index_ts_1 = __importDefault(require("./container/index.js"));
 const sectionParsers_ts_1 = require("./sectionParsers.js");
 const xz_decompress_ts_1 = require("../xz-decompress/xz-decompress.js");
 // source: https://abdulapopoola.com/2019/01/20/check-endianness-with-javascript/
@@ -206,7 +204,7 @@ class CramFile {
         return containerCount;
     }
     getContainerAtPosition(position) {
-        return new index_ts_3.default(this, position);
+        return new index_ts_1.default(this, position);
     }
     async readBlockHeader(position) {
         if (!this._sectionParsers) {
@@ -228,30 +226,28 @@ class CramFile {
     async _uncompressPre(compressionMethod, inputBuffer, uncompressedSize) {
         // console.log({ compressionMethod })
         if (compressionMethod === 'gzip') {
-            return (0, unzip_ts_1.unzip)(inputBuffer);
+            return await (0, unzip_ts_1.unzip)(inputBuffer);
         }
         else if (compressionMethod === 'bzip2') {
-            return (0, index_ts_2.decode)(inputBuffer);
+            return await htscodecs.bz2_uncompress(inputBuffer, uncompressedSize);
         }
         else if (compressionMethod === 'lzma') {
             return (0, xz_decompress_ts_1.xzDecompress)(inputBuffer);
         }
         else if (compressionMethod === 'rans') {
-            const outputBuffer = new Uint8Array(uncompressedSize);
-            (0, index_ts_1.default)(inputBuffer, outputBuffer);
-            return outputBuffer;
+            return await htscodecs.rans_uncompress(inputBuffer);
         }
         else if (compressionMethod === 'rans4x16') {
-            return htscodecs.r4x16_uncompress(inputBuffer);
+            return await htscodecs.r4x16_uncompress(inputBuffer);
         }
         else if (compressionMethod === 'arith') {
-            return htscodecs.arith_uncompress(inputBuffer);
+            return await htscodecs.arith_uncompress(inputBuffer);
         }
         else if (compressionMethod === 'fqzcomp') {
-            return htscodecs.fqzcomp_uncompress(inputBuffer);
+            return await htscodecs.fqzcomp_uncompress(inputBuffer);
         }
         else if (compressionMethod === 'tok3') {
-            return htscodecs.tok3_uncompress(inputBuffer);
+            return await htscodecs.tok3_uncompress(inputBuffer);
         }
         else {
             throw new errors_ts_1.CramUnimplementedError(`${compressionMethod} decompression not yet implemented`);

package/dist/cramFile/file.js.map

@@ -1 +1 @@
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package/dist/htscodecs/index.d.ts

@@ -1,5 +1 @@
-export declare function r4x8_uncompress(inputBuffer: Uint8Array): Uint8Array<any>;
-export declare function r4x16_uncompress(inputBuffer: Uint8Array): any;
-export declare function arith_uncompress(inputBuffer: Uint8Array): Uint8Array<any>;
-export declare function fqzcomp_uncompress(inputBuffer: Uint8Array): Uint8Array<ArrayBuffer> | undefined;
-export declare function tok3_uncompress(inputBuffer: Uint8Array): Uint8Array<ArrayBuffer>;
+export { rans_uncompress, rans_uncompress as r4x8_uncompress, r4x16_uncompress, arith_uncompress, fqzcomp_uncompress, tok3_uncompress, bz2_uncompress, } from '../htscodecs-wasm.ts';

package/dist/htscodecs/index.js

@@ -1,6 +1,4 @@
 "use strict";
-// @ts-nocheck
-//
 /*
  * Copyright (c) 2020 Genome Research Ltd.
  * Author(s): James Bonfield
@@ -33,75 +31,16 @@
  * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
  * OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
  */
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.r4x8_uncompress = r4x8_uncompress;
-exports.r4x16_uncompress = r4x16_uncompress;
-exports.arith_uncompress = arith_uncompress;
-exports.fqzcomp_uncompress = fqzcomp_uncompress;
-exports.tok3_uncompress = tok3_uncompress;
-// This is an interface to the htscodecs reference implementation of
-// the CRAM 3.1 codecs.
-// This JavaScript file is not part of the reference implementation
-// and is simply and interface to get a consistent interface for cram-js.
-const arith_gen_ts_1 = __importDefault(require("./arith_gen.js"));
-const fqzcomp = __importStar(require("./fqzcomp.js"));
-const r4x8 = __importStar(require("./rans.js"));
-const r4x16 = __importStar(require("./rans4x16.js"));
-const tok3 = __importStar(require("./tok3.js"));
-function r4x8_uncompress(inputBuffer) {
-    return r4x8.decode(inputBuffer);
-}
-function r4x16_uncompress(inputBuffer) {
-    return r4x16.decode(inputBuffer);
-}
-function arith_uncompress(inputBuffer) {
-    // fix by @cmdcolin for CRAM 3.1
-    // xref https://github.com/jkbonfield/htscodecs/pull/1/files
-    return new arith_gen_ts_1.default().decode(inputBuffer);
-}
-function fqzcomp_uncompress(inputBuffer) {
-    const q_lens = [];
-    return fqzcomp.decode(inputBuffer, q_lens);
-}
-function tok3_uncompress(inputBuffer) {
-    // Returns in string form instead of buffer
-    const out = tok3.decode(inputBuffer, 0, '\0');
-    return Uint8Array.from(Array.from(out).map(letter => letter.charCodeAt(0)));
-}
+exports.bz2_uncompress = exports.tok3_uncompress = exports.fqzcomp_uncompress = exports.arith_uncompress = exports.r4x16_uncompress = exports.r4x8_uncompress = exports.rans_uncompress = void 0;
+// This is an interface to the htscodecs library compiled to WASM.
+// The WASM module is built from the official samtools/htscodecs C library.
+var htscodecs_wasm_ts_1 = require("../htscodecs-wasm.js");
+Object.defineProperty(exports, "rans_uncompress", { enumerable: true, get: function () { return htscodecs_wasm_ts_1.rans_uncompress; } });
+Object.defineProperty(exports, "r4x8_uncompress", { enumerable: true, get: function () { return htscodecs_wasm_ts_1.rans_uncompress; } });
+Object.defineProperty(exports, "r4x16_uncompress", { enumerable: true, get: function () { return htscodecs_wasm_ts_1.r4x16_uncompress; } });
+Object.defineProperty(exports, "arith_uncompress", { enumerable: true, get: function () { return htscodecs_wasm_ts_1.arith_uncompress; } });
+Object.defineProperty(exports, "fqzcomp_uncompress", { enumerable: true, get: function () { return htscodecs_wasm_ts_1.fqzcomp_uncompress; } });
+Object.defineProperty(exports, "tok3_uncompress", { enumerable: true, get: function () { return htscodecs_wasm_ts_1.tok3_uncompress; } });
+Object.defineProperty(exports, "bz2_uncompress", { enumerable: true, get: function () { return htscodecs_wasm_ts_1.bz2_uncompress; } });
 //# sourceMappingURL=index.js.map

package/dist/htscodecs/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/htscodecs/index.ts"],"names":[],"mappings":";AAAA,cAAc;AACd,EAAE;AACF;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA+BG;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAcH,0CAEC;AAED,4CAEC;AAED,4CAIC;AAED,gDAGC;AAED,0CAIC;AAnCD,oEAAoE;AACpE,uBAAuB;AAEvB,mEAAmE;AACnE,yEAAyE;AAEzE,kEAAkC;AAClC,sDAAuC;AACvC,gDAAiC;AACjC,qDAAsC;AACtC,gDAAiC;AAEjC,SAAgB,eAAe,CAAC,WAAuB;IACrD,OAAO,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,CAAA;AACjC,CAAC;AAED,SAAgB,gBAAgB,CAAC,WAAuB;IACtD,OAAO,KAAK,CAAC,MAAM,CAAC,WAAW,CAAC,CAAA;AAClC,CAAC;AAED,SAAgB,gBAAgB,CAAC,WAAuB;IACtD,gCAAgC;IAChC,4DAA4D;IAC5D,OAAO,IAAI,sBAAK,EAAE,CAAC,MAAM,CAAC,WAAW,CAAC,CAAA;AACxC,CAAC;AAED,SAAgB,kBAAkB,CAAC,WAAuB;IACxD,MAAM,MAAM,GAAG,EAAE,CAAA;IACjB,OAAO,OAAO,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,CAAA;AAC5C,CAAC;AAED,SAAgB,eAAe,CAAC,WAAuB;IACrD,2CAA2C;IAC3C,MAAM,GAAG,GAAG,IAAI,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC,EAAE,IAAI,CAAC,CAAA;IAC7C,OAAO,UAAU,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;AAC7E,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/htscodecs/index.ts"],"names":[],"mappings":";AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA+BG;;;AAEH,kEAAkE;AAClE,2EAA2E;AAE3E,0DAQ6B;AAP3B,oHAAA,eAAe,OAAA;AACf,oHAAA,eAAe,OAAmB;AAClC,qHAAA,gBAAgB,OAAA;AAChB,qHAAA,gBAAgB,OAAA;AAChB,uHAAA,kBAAkB,OAAA;AAClB,oHAAA,eAAe,OAAA;AACf,mHAAA,cAAc,OAAA"}

package/dist/htscodecs-wasm.d.ts

@@ -0,0 +1,7 @@
+export declare function rans_uncompress(input: Uint8Array): Promise<Uint8Array<ArrayBuffer>>;
+export declare function r4x16_uncompress(input: Uint8Array): Promise<Uint8Array<ArrayBuffer>>;
+export declare function arith_uncompress(input: Uint8Array): Promise<Uint8Array<ArrayBuffer>>;
+export declare function fqzcomp_uncompress(input: Uint8Array): Promise<Uint8Array<ArrayBuffer>>;
+export declare function zlib_uncompress(input: Uint8Array): Promise<Uint8Array<ArrayBuffer>>;
+export declare function bz2_uncompress(input: Uint8Array, expectedSize: number): Promise<Uint8Array<ArrayBuffer>>;
+export declare function tok3_uncompress(input: Uint8Array): Promise<Uint8Array<ArrayBuffer>>;

package/dist/htscodecs-wasm.js

@@ -0,0 +1,183 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.rans_uncompress = rans_uncompress;
+exports.r4x16_uncompress = r4x16_uncompress;
+exports.arith_uncompress = arith_uncompress;
+exports.fqzcomp_uncompress = fqzcomp_uncompress;
+exports.zlib_uncompress = zlib_uncompress;
+exports.bz2_uncompress = bz2_uncompress;
+exports.tok3_uncompress = tok3_uncompress;
+const htscodecs_js_1 = __importDefault(require("./wasm/htscodecs.js"));
+let moduleInstance = null;
+let modulePromise = null;
+async function getModule() {
+    if (moduleInstance) {
+        return moduleInstance;
+    }
+    if (!modulePromise) {
+        modulePromise = (0, htscodecs_js_1.default)().then(m => {
+            moduleInstance = m;
+            return m;
+        });
+    }
+    return modulePromise;
+}
+function copyToWasm(module, data) {
+    const ptr = module._malloc(data.length);
+    module.HEAPU8.set(data, ptr);
+    return ptr;
+}
+function copyFromWasm(module, ptr, size) {
+    const result = new Uint8Array(size);
+    result.set(module.HEAPU8.subarray(ptr, ptr + size));
+    return result;
+}
+async function rans_uncompress(input) {
+    // Handle empty input - C implementation returns NULL for in_size < 9
+    if (input.length === 0) {
+        return new Uint8Array(0);
+    }
+    const module = await getModule();
+    const inPtr = copyToWasm(module, input);
+    const outSizePtr = module._malloc(4);
+    try {
+        const outPtr = module._rans_uncompress(inPtr, input.length, outSizePtr);
+        if (outPtr === 0) {
+            throw new Error('rans_uncompress failed');
+        }
+        const outSize = module.getValue(outSizePtr, 'i32');
+        const result = copyFromWasm(module, outPtr, outSize);
+        module._free(outPtr);
+        return result;
+    }
+    finally {
+        module._free(inPtr);
+        module._free(outSizePtr);
+    }
+}
+async function r4x16_uncompress(input) {
+    const module = await getModule();
+    const inPtr = copyToWasm(module, input);
+    const outSizePtr = module._malloc(4);
+    try {
+        const outPtr = module._rans_uncompress_4x16(inPtr, input.length, outSizePtr);
+        if (outPtr === 0) {
+            throw new Error('rans_uncompress_4x16 failed');
+        }
+        const outSize = module.getValue(outSizePtr, 'i32');
+        const result = copyFromWasm(module, outPtr, outSize);
+        module._free(outPtr);
+        return result;
+    }
+    finally {
+        module._free(inPtr);
+        module._free(outSizePtr);
+    }
+}
+async function arith_uncompress(input) {
+    const module = await getModule();
+    const inPtr = copyToWasm(module, input);
+    const outSizePtr = module._malloc(4);
+    try {
+        const outPtr = module._arith_uncompress(inPtr, input.length, outSizePtr);
+        if (outPtr === 0) {
+            throw new Error('arith_uncompress failed');
+        }
+        const outSize = module.getValue(outSizePtr, 'i32');
+        const result = copyFromWasm(module, outPtr, outSize);
+        module._free(outPtr);
+        return result;
+    }
+    finally {
+        module._free(inPtr);
+        module._free(outSizePtr);
+    }
+}
+async function fqzcomp_uncompress(input) {
+    const module = await getModule();
+    const inPtr = copyToWasm(module, input);
+    const outSizePtr = module._malloc(4);
+    const lenPtr = module._malloc(4);
+    try {
+        const outPtr = module._fqz_decompress(inPtr, input.length, outSizePtr, lenPtr);
+        if (outPtr === 0) {
+            throw new Error('fqz_decompress failed');
+        }
+        const outSize = module.getValue(outSizePtr, 'i32');
+        const result = copyFromWasm(module, outPtr, outSize);
+        module._free(outPtr);
+        return result;
+    }
+    finally {
+        module._free(inPtr);
+        module._free(outSizePtr);
+        module._free(lenPtr);
+    }
+}
+async function zlib_uncompress(input) {
+    if (input.length === 0) {
+        return new Uint8Array(0);
+    }
+    const module = await getModule();
+    const inPtr = copyToWasm(module, input);
+    const outSizePtr = module._malloc(4);
+    try {
+        const outPtr = module._zlib_uncompress(inPtr, input.length, outSizePtr);
+        if (outPtr === 0) {
+            throw new Error('zlib_uncompress failed');
+        }
+        const outSize = module.getValue(outSizePtr, 'i32');
+        const result = copyFromWasm(module, outPtr, outSize);
+        module._free(outPtr);
+        return result;
+    }
+    finally {
+        module._free(inPtr);
+        module._free(outSizePtr);
+    }
+}
+async function bz2_uncompress(input, expectedSize) {
+    if (input.length === 0) {
+        return new Uint8Array(0);
+    }
+    const module = await getModule();
+    const inPtr = copyToWasm(module, input);
+    const outSizePtr = module._malloc(4);
+    try {
+        const outPtr = module._bz2_uncompress(inPtr, input.length, expectedSize, outSizePtr);
+        if (outPtr === 0) {
+            throw new Error('bz2_uncompress failed');
+        }
+        const outSize = module.getValue(outSizePtr, 'i32');
+        const result = copyFromWasm(module, outPtr, outSize);
+        module._free(outPtr);
+        return result;
+    }
+    finally {
+        module._free(inPtr);
+        module._free(outSizePtr);
+    }
+}
+async function tok3_uncompress(input) {
+    const module = await getModule();
+    const inPtr = copyToWasm(module, input);
+    const outSizePtr = module._malloc(4);
+    try {
+        const outPtr = module._tok3_decode_names(inPtr, input.length, outSizePtr);
+        if (outPtr === 0) {
+            throw new Error('tok3_decode_names failed');
+        }
+        const outSize = module.getValue(outSizePtr, 'i32');
+        const result = copyFromWasm(module, outPtr, outSize);
+        module._free(outPtr);
+        return result;
+    }
+    finally {
+        module._free(inPtr);
+        module._free(outSizePtr);
+    }
+}
+//# sourceMappingURL=htscodecs-wasm.js.map

package/dist/htscodecs-wasm.js.map

@@ -0,0 +1 @@
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package/dist/unzip.d.ts

@@ -1 +1 @@
-export declare function unzip(input: Uint8Array): Uint8Array;
+export declare function unzip(input: Uint8Array): Promise<Uint8Array>;

package/dist/unzip.js

@@ -1,8 +1,8 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.unzip = unzip;
-const pako_esm2_1 = require("pako-esm2");
-function unzip(input) {
-    return (0, pako_esm2_1.inflate)(input, undefined);
+const htscodecs_wasm_ts_1 = require("./htscodecs-wasm.js");
+async function unzip(input) {
+    return (0, htscodecs_wasm_ts_1.zlib_uncompress)(input);
 }
 //# sourceMappingURL=unzip.js.map

package/dist/unzip.js.map

@@ -1 +1 @@
-{"version":3,"file":"unzip.js","sourceRoot":"","sources":["../src/unzip.ts"],"names":[],"mappings":";;AAEA,sBAEC;AAJD,yCAAmC;AAEnC,SAAgB,KAAK,CAAC,KAAiB;IACrC,OAAO,IAAA,mBAAO,EAAC,KAAK,EAAE,SAAS,CAAC,CAAA;AAClC,CAAC"}
+{"version":3,"file":"unzip.js","sourceRoot":"","sources":["../src/unzip.ts"],"names":[],"mappings":";;AAEA,sBAEC;AAJD,2DAAqD;AAE9C,KAAK,UAAU,KAAK,CAAC,KAAiB;IAC3C,OAAO,IAAA,mCAAe,EAAC,KAAK,CAAC,CAAA;AAC/B,CAAC"}

package/dist/wasm/htscodecs.d.ts

@@ -0,0 +1,5 @@
+export = createHtsCodecsModule;
+declare function createHtsCodecsModule(moduleArg?: {}): Promise<{}>;
+declare namespace createHtsCodecsModule {
+    export { createHtsCodecsModule as default };
+}

package/dist/wasm/htscodecs.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"htscodecs.js","sourceRoot":"","sources":["../../src/wasm/htscodecs.js"],"names":[],"mappings":";AAAA,IAAI,qBAAqB,GAAC,CAAC,GAAE,EAAE;IAAC,IAAI,WAAW,GAAC,UAAU,CAAC,QAAQ,EAAE,aAAa,EAAE,GAAG,CAAC;IAAA,OAAO,KAAK,WAAU,SAAS,GAAC,EAAE;QAAE,IAAI,SAAS,CAAC;QAAA,IAAI,CAAC,GAAC,SAAS,EAAC,CAAC,GAAC,CAAC,CAAC,UAAU,CAAC,MAAM,EAAC,CAAC,GAAC,CAAC,CAAC,UAAU,CAAC,iBAAiB,EAAC,CAAC,GAAC,UAAU,CAAC,OAAO,EAAE,QAAQ,EAAE,IAAI,IAAE,UAAU,IAAE,UAAU,CAAC,OAAO,EAAE,IAAI,EAAC,CAAC,GAAC,CAAC,CAAC,EAAC,CAAC,EAAC,EAAE,GAAC,MAAM,CAAC,CAAC,CAAA,CAAC,CAAC;QAAA,WAAW,IAAE,OAAO,UAAU,CAAA,CAAC,CAAA,WAAW,GAAC,UAAU,CAAA,CAAC,CAAA,CAAC,IAAE,CAAC,WAAW,GAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC;QAAA,IAAG,CAAC,EAAC,CAAC;YAAA,IAAI,EAAE,GAAC,OAAO,CAAC,IAAI,CAAC,CAAC;YAAA,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;YAAA,CAAC,GAAC,CAAC,CAAC,EAAC,CAAC,EAAC,EAAE,GAAC,OAAO,CAAC,QAAQ,GAAC,CAAC,CAAC,CAAA,MAAM,CAAC,CAAC,CAAA,CAAC,CAAA;QAAA,CAAC;aAAK,IAAG,CAAC,IAAE,CAAC;YAAC,IAAG,CAAC;gBAAA,IAAI,GAAG,CAAC,GAAG,EAAC,WAAW,CAAC,CAAA;YAAA,CAAC;YAAA,MAAK,CAAC,CAAA,CAAC;QAAA,IAAI,CAAC,GAAC,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,OAAO,CAAC,EAAC,CAAC,GAAC,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,EAAC,CAAC,GAAC,CAAC,CAAC,EAAC,CAAC,CAAC;QACxlB,SAAS,CAAC,CAAC,CAAC,IAAE,KAAI,IAAI,CAAC,GAAC,CAAC,EAAC,CAAC,GAAC,CAAC,CAAC,MAAM,EAAC,CAAC,GAAC,IAAI,UAAU,CAAC,CAAC,CAAC,EAAC,CAAC,EAAC,CAAC,GAAC,CAAC,EAAC,EAAE,CAAC;YAAC,CAAC,GAAC,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,EAAC,CAAC,CAAC,CAAC,CAAC,GAAC,CAAC,CAAC,IAAE,CAAC,GAAC,CAAC,CAAC,CAAA,OAAO,CAAC,CAAA,CAAA,CAAC;QAAA,IAAI,CAAC,EAAC,CAAC,EAAC,CAAC,EAAC,CAAC,EAAC,CAAC,EAAC,CAAC,EAAC,CAAC,EAAC,CAAC,EAAC,CAAC,EAAC,CAAC,EAAC,CAAC,GAAC,CAAC,CAAC,CAAC;QAAA,SAAS,CAAC,KAAG,IAAI,CAAC,GAAC,CAAC,CAAC,MAAM,CAAC,CAAA,CAAC,GAAC,IAAI,SAAS,CAAC,CAAC,CAAC,CAAC,CAAA,CAAC,GAAC,IAAI,UAAU,CAAC,CAAC,CAAC,CAAC,CAAA,CAAC,CAAC,MAAM,GAAC,CAAC,GAAC,IAAI,UAAU,CAAC,CAAC,CAAC,CAAC,CAAA,IAAI,WAAW,CAAC,CAAC,CAAC,CAAC,CAAA,CAAC,GAAC,IAAI,UAAU,CAAC,CAAC,CAAC,CAAC,CAAA,CAAC,GAAC,IAAI,WAAW,CAAC,CAAC,CAAC,CAAC,CAAA,CAAC,GAAC,IAAI,YAAY,CAAC,CAAC,CAAC,CAAC,CAAA,CAAC,GAAC,IAAI,YAAY,CAAC,CAAC,CAAC,CAAC,CAAA,CAAC,GAAC,IAAI,aAAa,CAAC,CAAC,CAAC,CAAC,CAAA,IAAI,cAAc,CAAC,CAAC,CAAC,CAAA,CAAA,CAAC;QAC7X,SAAS,CAAC,CAAC,CAAC,IAAE,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC,CAAC,CAAA,CAAC,GAAC,UAAU,GAAC,CAAC,GAAC,GAAG,CAAC,CAAA,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA,CAAC,GAAC,CAAC,CAAC,CAAC,CAAA,CAAC,GAAC,IAAI,WAAW,CAAC,YAAY,CAAC,CAAC,GAAC,0CAA0C,CAAC,CAAC,CAAA,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAA,MAAM,CAAC,CAAC,CAAA,CAAC;QAAA,IAAI,CAAC,CAAC;QAAA,KAAK,UAAU,EAAE,CAAC,CAAC,IAAE,OAAO,CAAC,CAAA,CAAA,CAAC;QAAA,KAAK,UAAU,EAAE,CAAC,CAAC,IAAE,IAAI,CAAC,GAAC,CAAC,CAAC,CAAA,IAAG,CAAC;YAAA,IAAI,CAAC,GAAC,MAAM,EAAE,CAAC,CAAC,CAAC,CAAC;YAAA,OAAO,MAAM,WAAW,CAAC,WAAW,CAAC,CAAC,EAAC,CAAC,CAAC,CAAA;QAAA,CAAC;QAAA,OAAM,CAAC,EAAC,CAAC;YAAA,CAAC,CAAC,0CAA0C,CAAC,EAAE,CAAC,EAAC,CAAC,CAAC,CAAC,CAAC,CAAA;QAAA,CAAC,CAAA,CAAC;QAAA,KAAK,UAAU,EAAE,CAAC,CAAC,IAAE,OAAO,EAAE,CAAC,CAAC,CAAC,CAAA,CAAA,CAAC;QAAA,MAAM,CAAC;YAAmB,YAAY,CAAC;gBAA/B,SAAI,GAAC,YAAY,CAAC;gBAAe,IAAI,CAAC,OAAO,GAAC,gCAAgC,CAAC,GAAG,CAAC;gBAAA,IAAI,CAAC,MAAM,GAAC,CAAC,CAAA;YAAA,CAAC;SAAC;QACpe,KAAI,IAAI,CAAC,GAAC,CAAC,CAAA,EAAE,GAAC,OAAK,CAAC,GAAC,CAAC,CAAC,MAAM;YAAE,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,CAAA,CAAA,CAAC,EAAC,CAAC,GAAC,EAAE,EAAC,CAAC,GAAC,EAAE,EAAC,EAAE,GAAC,GAAE,EAAE,GAAC,IAAI,CAAC,GAAC,CAAC,CAAC,MAAM,CAAC,KAAK,EAAE,CAAC,CAAA,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAA,CAAC,EAAC,CAAC,GAAC,CAAC,CAAC,EAAC,CAAC,GAAC,CAAC,EAAC,CAAC,GAAC,EAAE,EAAC,CAAC,GAAC,CAAC,CAAA,EAAE,GAAC,CAAC,GAAC,CAAC,CAAC,CAAA,CAAC,IAAE,CAAC,GAAC,CAAC,IAAE,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC,EAAC,CAAC,GAAC,CAAC,CAAC,CAAC,CAAC,CAAA,CAAC,CAAC,CAAC,EAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA,CAAA,CAAC,EAAC,EAAE,GAAC,CAAC,CAAA,EAAE,GAAC,IAAG,CAAC,CAAC;YAAC,IAAG,CAAC;gBAAA,IAAG,CAAC,EAAE,EAAC,CAAC,CAAC,CAAC,IAAE,CAAC,GAAC,CAAC,CAAC;oBAAC,IAAG,CAAC;wBAAA,CAAC,GAAC,CAAC,GAAC,CAAC,EAAC,CAAC,CAAC,CAAC,CAAC,CAAA;oBAAA,CAAC;oBAAA,OAAM,CAAC,EAAC,CAAC;wBAAA,CAAC,YAAY,CAAC,IAAE,QAAQ,IAAE,CAAC,IAAE,CAAC,CAAC,CAAC,EAAC,CAAC,CAAC,CAAA;oBAAA,CAAC;YAAA,CAAC;YAAA,OAAM,CAAC,EAAC,CAAC;gBAAA,CAAC,YAAY,CAAC,IAAE,QAAQ,IAAE,CAAC,IAAE,CAAC,CAAC,CAAC,EAAC,CAAC,CAAC,CAAA;YAAA,CAAC,CAAA,CAAC,EAAC,EAAE,GAAC,CAAC,IAAI,EAAC,EAAE,EAAC,EAAE,CAAC,EAAC,EAAE,GAAC,IAAI,WAAW,EAAC,CAAC,GAAC,IAAI,UAAU,CAAC,GAAG,CAAC,EAAC,CAAC,GAAC,EAAE,EAAC,CAAC,IAAE,CAAC,EAAC,EAAE,CAAC;YAAC,CAAC,CAAC,EAAE,GAAC,CAAC,CAAC,GAAC,EAAE,GAAC,CAAC,EAAC,CAAC,CAAC,EAAE,GAAC,CAAC,CAAC,GAAC,CAAC,EAAC,CAAC,CAAC,EAAE,GAAC,CAAC,CAAC,GAAC,EAAE,GAAC,CAAC,CAAC;QAAA,CAAC,CAAC,EAAE,CAAC,GAAC,EAAE,CAAC;QAAA,CAAC,CAAC,EAAE,CAAC,GAAC,EAAE,CAAC;QAAA,CAAC,CAAC,aAAa,IAAE,CAAC,CAAC,GAAC,CAAC,CAAC,aAAa,CAAC,CAAC;QAAA,CAAC,CAAC,KAAK,IAAE,CAAC,CAAC,GAAC,CAAC,CAAC,KAAK,CAAC,CAAC;QAC1e,CAAC,CAAC,QAAQ,IAAE,CAAC,CAAC,GAAC,CAAC,CAAC,QAAQ,CAAC,CAAC;QAAA,IAAG,CAAC,CAAC,OAAO;YAAC,KAAI,UAAU,IAAE,OAAO,CAAC,CAAC,OAAO,IAAE,CAAC,CAAC,CAAC,OAAO,GAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,EAAC,CAAC,GAAC,CAAC,CAAC,OAAO,CAAC,MAAM;gBAAE,CAAC,CAAC,OAAO,CAAC,KAAK,EAAE,EAAE,CAAC;QAAA,CAAC,CAAC,QAAQ,GA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package/esm/craiIndex.js

@@ -16,7 +16,7 @@ function addRecordToIndex(index, record) {
         sliceBytes: sliceBytes,
     });
 }
-function maybeUnzip(data) {
+async function maybeUnzip(data) {
     return data[0] === 31 && data[1] === 139 ? unzip(data) : data;
 }
 export default class CraiIndex {
@@ -32,7 +32,7 @@ export default class CraiIndex {
     }
     async parseIndex() {
         const index = {};
-        const uncompressedBuffer = maybeUnzip(await this.filehandle.readFile());
+        const uncompressedBuffer = await maybeUnzip(await this.filehandle.readFile());
         const dataView = new DataView(uncompressedBuffer.buffer);
         if (uncompressedBuffer.length > 4 &&
             dataView.getUint32(0, true) === BAI_MAGIC) {

package/esm/craiIndex.js.map

@@ -1 +1 @@
-{"version":3,"file":"craiIndex.js","sourceRoot":"","sources":["../src/craiIndex.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,kBAAkB,EAAE,MAAM,aAAa,CAAA;AAChD,OAAO,EAAE,IAAI,EAAE,MAAM,SAAS,CAAA;AAC9B,OAAO,EAAE,KAAK,EAAE,MAAM,YAAY,CAAA;AAIlC,MAAM,SAAS,GAAG,UAAU,CAAA,CAAC,QAAQ;AAYrC,SAAS,gBAAgB,CAAC,KAAkB,EAAE,MAAgB;IAC5D,MAAM,CAAC,KAAK,EAAE,KAAK,EAAE,IAAI,EAAE,cAAc,EAAE,UAAU,EAAE,UAAU,CAAC,GAAG,MAAM,CAAA;IAE3E,MAAM,CAAC,GAAG,KAAM,CAAA;IAChB,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC;QACd,KAAK,CAAC,CAAC,CAAC,GAAG,EAAE,CAAA;IACf,CAAC;IAED,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;QACZ,KAAK,EAAE,KAAM;QACb,IAAI,EAAE,IAAK;QACX,cAAc,EAAE,cAAe;QAC/B,UAAU,EAAE,UAAW;QACvB,UAAU,EAAE,UAAW;KACxB,CAAC,CAAA;AACJ,CAAC;AAED,SAAS,UAAU,CAAC,IAAgB;IAClC,OAAO,IAAI,CAAC,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI,CAAC,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI,CAAA;AAC/D,CAAC;AAED,MAAM,CAAC,OAAO,OAAO,SAAS;IAiB5B;;;;;;OAMG;IACH,YAAY,IAAoB;QAC9B,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,UAAU,CAAC,CAAA;IAC9D,CAAC;IAED,KAAK,CAAC,UAAU;QACd,MAAM,KAAK,GAAgB,EAAE,CAAA;QAC7B,MAAM,kBAAkB,GAAG,UAAU,CAAC,MAAM,IAAI,CAAC,UAAU,CAAC,QAAQ,EAAE,CAAC,CAAA;QACvE,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,kBAAkB,CAAC,MAAM,CAAC,CAAA;QACxD,IACE,kBAAkB,CAAC,MAAM,GAAG,CAAC;YAC7B,QAAQ,CAAC,SAAS,CAAC,CAAC,EAAE,IAAI,CAAC,KAAK,SAAS,EACzC,CAAC;YACD,MAAM,IAAI,kBAAkB,CAC1B,+IAA+I,CAChJ,CAAA;QACH,CAAC;QACD,uEAAuE;QACvE,qEAAqE;QACrE,qEAAqE;QACrE,gBAAgB;QAChB,IAAI,aAAa,GAAa,EAAE,CAAA;QAChC,IAAI,aAAa,GAAG,EAAE,CAAA;QACtB,KAAK,MAAM,QAAQ,IAAI,kBAAkB,EAAE,CAAC;YAC1C,IACE,CAAC,QAAQ,IAAI,EAAE,IAAI,QAAQ,IAAI,EAAE,CAAC,CAAC,SAAS;gBAC5C,CAAC,CAAC,aAAa,IAAI,QAAQ,KAAK,EAAE,CAAC,CAAC,eAAe,EACnD,CAAC;gBACD,aAAa,IAAI,MAAM,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAA;YAChD,CAAC;iBAAM,IAAI,QAAQ,KAAK,CAAC,CAAC,QAAQ,EAAE,CAAC;gBACnC,aAAa,CAAC,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,aAAa,EAAE,EAAE,CAAC,CAAC,CAAA;gBACtD,aAAa,GAAG,EAAE,CAAA;YACpB,CAAC;iBAAM,IAAI,QAAQ,KAAK,EAAE,CAAC,QAAQ,EAAE,CAAC;gBACpC,aAAa,CAAC,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,aAAa,EAAE,EAAE,CAAC,CAAC,CAAA;gBACtD,aAAa,GAAG,EAAE,CAAA;gBAClB,gBAAgB,CAAC,KAAK,EAAE,aAAa,CAAC,CAAA;gBACtC,aAAa,GAAG,EAAE,CAAA;YACpB,CAAC;iBAAM,IAAI,QAAQ,KAAK,EAAE,CAAC,QAAQ,IAAI,QAAQ,KAAK,EAAE,CAAC,WAAW,EAAE,CAAC;gBACnE,oDAAoD;gBACpD,oCAAoC;gBACpC,MAAM,IAAI,kBAAkB,CAAC,0BAA0B,CAAC,CAAA;YAC1D,CAAC;QACH,CAAC;QAED,8DAA8D;QAC9D,IAAI,aAAa,EAAE,CAAC;YAClB,aAAa,CAAC,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,aAAa,EAAE,EAAE,CAAC,CAAC,CAAA;QACxD,CAAC;QACD,IAAI,aAAa,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAC/B,gBAAgB,CAAC,KAAK,EAAE,aAAa,CAAC,CAAA;QACxC,CAAC;QAED,6BAA6B;QAC7B,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,KAAK,EAAE,GAAG,CAAC,EAAE,EAAE;YAC7C,MAAM,EAAE,GAAG,GAAI,CAAA;YACf,KAAK,CAAC,KAAK,CAAC,GAAG,EAAE,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC,KAAK,IAAI,CAAC,CAAC,IAAI,GAAG,CAAC,CAAC,IAAI,CAAC,CAAA;QACxE,CAAC,CAAC,CAAA;QACF,OAAO,KAAK,CAAA;IACd,CAAC;IAED,QAAQ;QACN,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE,CAAC;YACtB,IAAI,CAAC,WAAW,GAAG,IAAI,CAAC,UAAU,EAAE,CAAC,KAAK,CAAC,CAAC,CAAU,EAAE,EAAE;gBACxD,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;gBAC5B,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;QACJ,CAAC;QACD,OAAO,IAAI,CAAC,WAAW,CAAA;IACzB,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,2BAA2B,CAAC,KAAa;QAC7C,OAAO,CAAC,CAAC,CAAC,MAAM,IAAI,CAAC,QAAQ,EAAE,CAAC,CAAC,KAAK,CAAC,CAAA;IACzC,CAAC;IAED;;;;;;;;;;OAUG;IACH,KAAK,CAAC,kBAAkB,CACtB,KAAa,EACb,UAAkB,EAClB,QAAgB;QAEhB,MAAM,UAAU,GAAG,CAAC,MAAM,IAAI,CAAC,QAAQ,EAAE,CAAC,CAAC,KAAK,CAAC,CAAA;QACjD,IAAI,CAAC,UAAU,EAAE,CAAC;YAChB,OAAO,EAAE,CAAA;QACX,CAAC;QAED,MAAM,OAAO,GAAG,CAAC,KAAY,EAAE,EAAE;YAC/B,MAAM,UAAU,GAAG,KAAK,CAAC,KAAK,CAAA;YAC9B,MAAM,QAAQ,GAAG,KAAK,CAAC,KAAK,GAAG,KAAK,CAAC,IAAI,CAAA;YACzC,IAAI,UAAU,GAAG,QAAQ,EAAE,CAAC;gBAC1B,OAAO,CAAC,CAAC,CAAA;YACX,CAAC,CAAC,0BAA0B;YAC5B,IAAI,QAAQ,IAAI,UAAU,EAAE,CAAC;gBAC3B,OAAO,CAAC,CAAA;YACV,CAAC,CAAC,wBAAwB;YAC1B,OAAO,CAAC,CAAA,CAAC,uBAAuB;QAClC,CAAC,CAAA;QACD,MAAM,IAAI,GAAG,EAAa,CAAA;QAC1B,KAAK,MAAM,KAAK,IAAI,UAAU,EAAE,CAAC;YAC/B,IAAI,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,EAAE,CAAC;gBACzB,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;YAClB,CAAC;QACH,CAAC;QACD,OAAO,IAAI,CAAA;IACb,CAAC;CACF"}
+{"version":3,"file":"craiIndex.js","sourceRoot":"","sources":["../src/craiIndex.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,kBAAkB,EAAE,MAAM,aAAa,CAAA;AAChD,OAAO,EAAE,IAAI,EAAE,MAAM,SAAS,CAAA;AAC9B,OAAO,EAAE,KAAK,EAAE,MAAM,YAAY,CAAA;AAIlC,MAAM,SAAS,GAAG,UAAU,CAAA,CAAC,QAAQ;AAYrC,SAAS,gBAAgB,CAAC,KAAkB,EAAE,MAAgB;IAC5D,MAAM,CAAC,KAAK,EAAE,KAAK,EAAE,IAAI,EAAE,cAAc,EAAE,UAAU,EAAE,UAAU,CAAC,GAAG,MAAM,CAAA;IAE3E,MAAM,CAAC,GAAG,KAAM,CAAA;IAChB,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC;QACd,KAAK,CAAC,CAAC,CAAC,GAAG,EAAE,CAAA;IACf,CAAC;IAED,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;QACZ,KAAK,EAAE,KAAM;QACb,IAAI,EAAE,IAAK;QACX,cAAc,EAAE,cAAe;QAC/B,UAAU,EAAE,UAAW;QACvB,UAAU,EAAE,UAAW;KACxB,CAAC,CAAA;AACJ,CAAC;AAED,KAAK,UAAU,UAAU,CAAC,IAAgB;IACxC,OAAO,IAAI,CAAC,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI,CAAC,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI,CAAA;AAC/D,CAAC;AAED,MAAM,CAAC,OAAO,OAAO,SAAS;IAiB5B;;;;;;OAMG;IACH,YAAY,IAAoB;QAC9B,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,UAAU,CAAC,CAAA;IAC9D,CAAC;IAED,KAAK,CAAC,UAAU;QACd,MAAM,KAAK,GAAgB,EAAE,CAAA;QAC7B,MAAM,kBAAkB,GAAG,MAAM,UAAU,CACzC,MAAM,IAAI,CAAC,UAAU,CAAC,QAAQ,EAAE,CACjC,CAAA;QACD,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,kBAAkB,CAAC,MAAM,CAAC,CAAA;QACxD,IACE,kBAAkB,CAAC,MAAM,GAAG,CAAC;YAC7B,QAAQ,CAAC,SAAS,CAAC,CAAC,EAAE,IAAI,CAAC,KAAK,SAAS,EACzC,CAAC;YACD,MAAM,IAAI,kBAAkB,CAC1B,+IAA+I,CAChJ,CAAA;QACH,CAAC;QACD,uEAAuE;QACvE,qEAAqE;QACrE,qEAAqE;QACrE,gBAAgB;QAChB,IAAI,aAAa,GAAa,EAAE,CAAA;QAChC,IAAI,aAAa,GAAG,EAAE,CAAA;QACtB,KAAK,MAAM,QAAQ,IAAI,kBAAkB,EAAE,CAAC;YAC1C,IACE,CAAC,QAAQ,IAAI,EAAE,IAAI,QAAQ,IAAI,EAAE,CAAC,CAAC,SAAS;gBAC5C,CAAC,CAAC,aAAa,IAAI,QAAQ,KAAK,EAAE,CAAC,CAAC,eAAe,EACnD,CAAC;gBACD,aAAa,IAAI,MAAM,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAA;YAChD,CAAC;iBAAM,IAAI,QAAQ,KAAK,CAAC,CAAC,QAAQ,EAAE,CAAC;gBACnC,aAAa,CAAC,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,aAAa,EAAE,EAAE,CAAC,CAAC,CAAA;gBACtD,aAAa,GAAG,EAAE,CAAA;YACpB,CAAC;iBAAM,IAAI,QAAQ,KAAK,EAAE,CAAC,QAAQ,EAAE,CAAC;gBACpC,aAAa,CAAC,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,aAAa,EAAE,EAAE,CAAC,CAAC,CAAA;gBACtD,aAAa,GAAG,EAAE,CAAA;gBAClB,gBAAgB,CAAC,KAAK,EAAE,aAAa,CAAC,CAAA;gBACtC,aAAa,GAAG,EAAE,CAAA;YACpB,CAAC;iBAAM,IAAI,QAAQ,KAAK,EAAE,CAAC,QAAQ,IAAI,QAAQ,KAAK,EAAE,CAAC,WAAW,EAAE,CAAC;gBACnE,oDAAoD;gBACpD,oCAAoC;gBACpC,MAAM,IAAI,kBAAkB,CAAC,0BAA0B,CAAC,CAAA;YAC1D,CAAC;QACH,CAAC;QAED,8DAA8D;QAC9D,IAAI,aAAa,EAAE,CAAC;YAClB,aAAa,CAAC,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,aAAa,EAAE,EAAE,CAAC,CAAC,CAAA;QACxD,CAAC;QACD,IAAI,aAAa,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAC/B,gBAAgB,CAAC,KAAK,EAAE,aAAa,CAAC,CAAA;QACxC,CAAC;QAED,6BAA6B;QAC7B,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,KAAK,EAAE,GAAG,CAAC,EAAE,EAAE;YAC7C,MAAM,EAAE,GAAG,GAAI,CAAA;YACf,KAAK,CAAC,KAAK,CAAC,GAAG,EAAE,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC,KAAK,IAAI,CAAC,CAAC,IAAI,GAAG,CAAC,CAAC,IAAI,CAAC,CAAA;QACxE,CAAC,CAAC,CAAA;QACF,OAAO,KAAK,CAAA;IACd,CAAC;IAED,QAAQ;QACN,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE,CAAC;YACtB,IAAI,CAAC,WAAW,GAAG,IAAI,CAAC,UAAU,EAAE,CAAC,KAAK,CAAC,CAAC,CAAU,EAAE,EAAE;gBACxD,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;gBAC5B,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;QACJ,CAAC;QACD,OAAO,IAAI,CAAC,WAAW,CAAA;IACzB,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,2BAA2B,CAAC,KAAa;QAC7C,OAAO,CAAC,CAAC,CAAC,MAAM,IAAI,CAAC,QAAQ,EAAE,CAAC,CAAC,KAAK,CAAC,CAAA;IACzC,CAAC;IAED;;;;;;;;;;OAUG;IACH,KAAK,CAAC,kBAAkB,CACtB,KAAa,EACb,UAAkB,EAClB,QAAgB;QAEhB,MAAM,UAAU,GAAG,CAAC,MAAM,IAAI,CAAC,QAAQ,EAAE,CAAC,CAAC,KAAK,CAAC,CAAA;QACjD,IAAI,CAAC,UAAU,EAAE,CAAC;YAChB,OAAO,EAAE,CAAA;QACX,CAAC;QAED,MAAM,OAAO,GAAG,CAAC,KAAY,EAAE,EAAE;YAC/B,MAAM,UAAU,GAAG,KAAK,CAAC,KAAK,CAAA;YAC9B,MAAM,QAAQ,GAAG,KAAK,CAAC,KAAK,GAAG,KAAK,CAAC,IAAI,CAAA;YACzC,IAAI,UAAU,GAAG,QAAQ,EAAE,CAAC;gBAC1B,OAAO,CAAC,CAAC,CAAA;YACX,CAAC,CAAC,0BAA0B;YAC5B,IAAI,QAAQ,IAAI,UAAU,EAAE,CAAC;gBAC3B,OAAO,CAAC,CAAA;YACV,CAAC,CAAC,wBAAwB;YAC1B,OAAO,CAAC,CAAA,CAAC,uBAAuB;QAClC,CAAC,CAAA;QACD,MAAM,IAAI,GAAG,EAAa,CAAA;QAC1B,KAAK,MAAM,KAAK,IAAI,UAAU,EAAE,CAAC;YAC/B,IAAI,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,EAAE,CAAC;gBACzB,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;YAClB,CAAC;QACH,CAAC;QACD,OAAO,IAAI,CAAA;IACb,CAAC;CACF"}

package/esm/cramFile/file.d.ts

@@ -72,7 +72,7 @@ export default class CramFile {
         _endPosition: number;
         _size: number;
     }>;
-    _uncompressPre(compressionMethod: CompressionMethod, inputBuffer: Uint8Array, uncompressedSize: number): Promise<any>;
-    _uncompress(compressionMethod: CompressionMethod, inputBuffer: Uint8Array, uncompressedSize: number): Promise<any>;
+    _uncompressPre(compressionMethod: CompressionMethod, inputBuffer: Uint8Array, uncompressedSize: number): Promise<Uint8Array<ArrayBufferLike>>;
+    _uncompress(compressionMethod: CompressionMethod, inputBuffer: Uint8Array, uncompressedSize: number): Promise<Uint8Array<ArrayBufferLike>>;
     readBlock(position: number): Promise<CramFileBlock>;
 }

package/esm/cramFile/file.js

@@ -3,10 +3,8 @@ import QuickLRU from 'quick-lru';
 import { CramMalformedError, CramUnimplementedError } from "../errors.js";
 import * as htscodecs from "../htscodecs/index.js";
 import { open } from "../io.js";
-import ransuncompress from "../rans/index.js";
 import { parseHeaderText } from "../sam.js";
 import { parseItem, tinyMemoize } from "./util.js";
-import { decode } from "../seek-bzip/index.js";
 import { unzip } from "../unzip.js";
 import CramContainer from "./container/index.js";
 import { cramFileDefinition, getSectionParsers, } from "./sectionParsers.js";
@@ -190,30 +188,28 @@ export default class CramFile {
     async _uncompressPre(compressionMethod, inputBuffer, uncompressedSize) {
         // console.log({ compressionMethod })
         if (compressionMethod === 'gzip') {
-            return unzip(inputBuffer);
+            return await unzip(inputBuffer);
         }
         else if (compressionMethod === 'bzip2') {
-            return decode(inputBuffer);
+            return await htscodecs.bz2_uncompress(inputBuffer, uncompressedSize);
         }
         else if (compressionMethod === 'lzma') {
             return xzDecompress(inputBuffer);
         }
         else if (compressionMethod === 'rans') {
-            const outputBuffer = new Uint8Array(uncompressedSize);
-            ransuncompress(inputBuffer, outputBuffer);
-            return outputBuffer;
+            return await htscodecs.rans_uncompress(inputBuffer);
         }
         else if (compressionMethod === 'rans4x16') {
-            return htscodecs.r4x16_uncompress(inputBuffer);
+            return await htscodecs.r4x16_uncompress(inputBuffer);
         }
         else if (compressionMethod === 'arith') {
-            return htscodecs.arith_uncompress(inputBuffer);
+            return await htscodecs.arith_uncompress(inputBuffer);
         }
         else if (compressionMethod === 'fqzcomp') {
-            return htscodecs.fqzcomp_uncompress(inputBuffer);
+            return await htscodecs.fqzcomp_uncompress(inputBuffer);
         }
         else if (compressionMethod === 'tok3') {
-            return htscodecs.tok3_uncompress(inputBuffer);
+            return await htscodecs.tok3_uncompress(inputBuffer);
         }
         else {
             throw new CramUnimplementedError(`${compressionMethod} decompression not yet implemented`);