@gmod/cram 2.0.3 → 3.0.0

package/esm/cramFile/container/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/cramFile/container/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,kBAAkB,EAAE,MAAM,cAAc,CAAA;AAEjD,OAAO,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,MAAM,SAAS,CAAA;AAC1D,OAAO,SAAS,MAAM,UAAU,CAAA;AAChC,OAAO,8BAA8B,MAAM,qBAAqB,CAAA;AAGhE,MAAM,CAAC,OAAO,OAAO,aAAa;IAChC,YACS,IAAc,EACd,YAAoB;QADpB,SAAI,GAAJ,IAAI,CAAU;QACd,iBAAY,GAAZ,YAAY,CAAQ;IAC1B,CAAC;IAEJ,UAAU;IACV,SAAS;QACP,OAAO,IAAI,CAAC,oBAAoB,CAAC,IAAI,CAAC,YAAY,CAAC,CAAA;IACrD,CAAC;IAED,UAAU;IACV,KAAK,CAAC,yBAAyB;QAC7B,MAAM,eAAe,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QAE9C,gFAAgF;QAChF,IAAI,CAAC,eAAe,CAAC,UAAU,EAAE,CAAC;YAChC,OAAO,IAAI,CAAA;QACb,CAAC;QACD,MAAM,cAAc,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,iBAAiB,EAAE,CAAA;QAC1D,MAAM,KAAK,GAAG,MAAM,IAAI,CAAC,aAAa,EAAE,CAAA;QACxC,IAAI,KAAK,KAAK,SAAS,EAAE,CAAC;YACxB,OAAO,SAAS,CAAA;QAClB,CAAC;QACD,IAAI,KAAK,CAAC,WAAW,KAAK,oBAAoB,EAAE,CAAC;YAC/C,MAAM,IAAI,kBAAkB,CAC1B,wBAAwB,KAAK,CAAC,WAAW,yDAAyD,CACnG,CAAA;QACH,CAAC;QACD,MAAM,OAAO,GAAG,SAAS,CACvB,KAAK,CAAC,OAAO,EACb,cAAc,CAAC,qBAAqB,CAAC,MAAM,EAC3C,CAAC,EACD,KAAK,CAAC,eAAe,CACtB,CAAA;QACD,OAAO;YACL,GAAG,KAAK;YACR,aAAa,EAAE,OAAO;SACvB,CAAA;IACH,CAAC;IAED,KAAK,CAAC,aAAa;QACjB,MAAM,eAAe,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QAC9C,OAAO,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,eAAe,CAAC,YAAY,CAAC,CAAA;IAC1D,CAAC;IAED,kFAAkF;IAClF,UAAU;IACV,KAAK,CAAC,oBAAoB;QACxB,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,yBAAyB,EAAE,CAAA;QACrD,IAAI,CAAC,MAAM,EAAE,CAAC;YACZ,OAAO,SAAS,CAAA;QAClB,CAAC;QACD,OAAO,IAAI,8BAA8B,CAAC,MAAM,CAAC,aAAa,CAAC,CAAA;IACjE,CAAC;IAED,QAAQ,CAAC,aAAqB,EAAE,SAAiB;QAC/C,qEAAqE;QACrE,wCAAwC;QACxC,OAAO,IAAI,SAAS,CAAC,IAAI,EAAE,aAAa,EAAE,SAAS,CAAC,CAAA;IACtD,CAAC;IAED,KAAK,CAAC,oBAAoB,CAAC,QAAgB;QACzC,MAAM,cAAc,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,iBAAiB,EAAE,CAAA;QAC1D,MAAM,EAAE,oBAAoB,EAAE,oBAAoB,EAAE,GAAG,cAAc,CAAA;QACrE,MAAM,EAAE,IAAI,EAAE,QAAQ,EAAE,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,CAAA;QAEjD,IAAI,QAAQ,IAAI,QAAQ,EAAE,CAAC;YACzB,OAAO,SAAS,CAAA;QAClB,CAAC;QAED,wEAAwE;QACxE,iDAAiD;QACjD,MAAM,MAAM,GAAG,MAAM,CAAC,WAAW,CAAC,oBAAoB,CAAC,SAAS,CAAC,CAAA;QACjE,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC,EAAE,oBAAoB,CAAC,SAAS,EAAE,QAAQ,CAAC,CAAA;QACzE,MAAM,OAAO,GAAG,SAAS,CAAC,MAAM,EAAE,oBAAoB,CAAC,MAAM,CAAQ,CAAA;QACrE,MAAM,gBAAgB,GAAG,QAAQ,CAAC,OAAO,CAAC,YAAY,CAAC,CAAA;QACvD,IAAI,QAAQ,GAAG,OAAO,CAAC,MAAM,IAAI,QAAQ,EAAE,CAAC;YAC1C,OAAO,CAAC,IAAI,CACV,GAAG,IAAI,CAAC,IAAI,yBAAyB,QAAQ,4CAA4C,OAAO,CAAC,MAAM,yEAAyE,CACjL,CAAA;YACD,OAAO,SAAS,CAAA;QAClB,CAAC;QACD,MAAM,MAAM,GAAG,MAAM,CAAC,WAAW,CAC/B,oBAAoB,CAAC,SAAS,CAAC,OAAO,CAAC,YAAY,CAAC,CACrD,CAAA;QACD,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,CAClB,MAAM,EACN,CAAC,EACD,oBAAoB,CAAC,SAAS,CAAC,OAAO,CAAC,YAAY,CAAC,EACpD,QAAQ,GAAG,OAAO,CAAC,KAAK,GAAG,gBAAgB,CAC5C,CAAA;QACD,MAAM,OAAO,GAAG,SAAS,CAAC,MAAM,EAAE,oBAAoB,CAAC,MAAM,CAAC,CAAA;QAE9D,IAAI,IAAI,CAAC,IAAI,CAAC,iBAAiB,IAAI,OAAO,CAAC,KAAK,KAAK,SAAS,EAAE,CAAC;YAC/D,MAAM,IAAI,CAAC,IAAI,CAAC,UAAU,CACxB,QAAQ,EACR,OAAO,CAAC,KAAK,GAAG,OAAO,CAAC,KAAK,GAAG,gBAAgB,GAAG,CAAC,EACpD,OAAO,CAAC,KAAK,EACb,0CAA0C,QAAQ,EAAE,CACrD,CAAA;QACH,CAAC;QAED,MAAM,cAAc,GAAG,MAAM,CAAC,MAAM,CAAC,OAAO,EAAE,OAAO,EAAE;YACrD,KAAK,EAAE,OAAO,CAAC,KAAK,GAAG,OAAO,CAAC,KAAK,GAAG,gBAAgB;YACvD,YAAY,EAAE,OAAO,CAAC,KAAK,GAAG,OAAO,CAAC,KAAK,GAAG,gBAAgB,GAAG,QAAQ;SAC1E,CAAC,CAAA;QAEF,OAAO,cAAc,CAAA;IACvB,CAAC;CACF;AAED,0DAA0D;KACvD,KAAK,CAAC,GAAG,CAAC;KACV,OAAO,CAAC,MAAM,CAAC,EAAE,CAAC,WAAW,CAAC,aAAa,EAAE,MAAM,CAAC,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/cramFile/container/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,kBAAkB,EAAE,MAAM,cAAc,CAAA;AAEjD,OAAO,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,MAAM,SAAS,CAAA;AAC1D,OAAO,SAAS,MAAM,UAAU,CAAA;AAChC,OAAO,8BAA8B,MAAM,qBAAqB,CAAA;AAEhE,OAAO,EAAE,iBAAiB,EAAE,MAAM,mBAAmB,CAAA;AAErD,MAAM,CAAC,OAAO,OAAO,aAAa;IAChC,YACS,IAAc,EACd,YAAoB;QADpB,SAAI,GAAJ,IAAI,CAAU;QACd,iBAAY,GAAZ,YAAY,CAAQ;IAC1B,CAAC;IAEJ,SAAS;QACP,OAAO,IAAI,CAAC,oBAAoB,CAAC,IAAI,CAAC,YAAY,CAAC,CAAA;IACrD,CAAC;IAED,KAAK,CAAC,yBAAyB;QAC7B,MAAM,eAAe,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QAE9C,yEAAyE;QACzE,SAAS;QACT,IAAI,CAAC,CAAA,eAAe,aAAf,eAAe,uBAAf,eAAe,CAAE,UAAU,CAAA,EAAE,CAAC;YACjC,OAAO,IAAI,CAAA;QACb,CAAC;QACD,MAAM,EAAE,YAAY,EAAE,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,CAAA;QACxD,MAAM,cAAc,GAAG,iBAAiB,CAAC,YAAY,CAAC,CAAA;QAEtD,MAAM,KAAK,GAAG,MAAM,IAAI,CAAC,aAAa,EAAE,CAAA;QACxC,IAAI,KAAK,KAAK,SAAS,EAAE,CAAC;YACxB,OAAO,SAAS,CAAA;QAClB,CAAC;QACD,IAAI,KAAK,CAAC,WAAW,KAAK,oBAAoB,EAAE,CAAC;YAC/C,MAAM,IAAI,kBAAkB,CAC1B,wBAAwB,KAAK,CAAC,WAAW,yDAAyD,CACnG,CAAA;QACH,CAAC;QAED,MAAM,OAAO,GAAG,SAAS,CACvB,KAAK,CAAC,OAAO,EACb,cAAc,CAAC,qBAAqB,CAAC,MAAM,EAC3C,CAAC,EACD,KAAK,CAAC,eAAe,CACtB,CAAA;QACD,OAAO;YACL,GAAG,KAAK;YACR,aAAa,EAAE,OAAO;SACvB,CAAA;IACH,CAAC;IAED,KAAK,CAAC,aAAa;QACjB,MAAM,eAAe,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QAC9C,IAAI,CAAC,eAAe,EAAE,CAAC;YACrB,OAAO,SAAS,CAAA;QAClB,CAAC;QACD,OAAO,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,eAAe,CAAC,YAAY,CAAC,CAAA;IAC1D,CAAC;IAED,2EAA2E;IAC3E,SAAS;IACT,KAAK,CAAC,oBAAoB;QACxB,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,yBAAyB,EAAE,CAAA;QACrD,IAAI,CAAC,MAAM,EAAE,CAAC;YACZ,OAAO,SAAS,CAAA;QAClB,CAAC;QAED,OAAO,IAAI,8BAA8B,CAAC,MAAM,CAAC,aAAa,CAAC,CAAA;IACjE,CAAC;IAED,QAAQ,CAAC,aAAqB,EAAE,SAAiB;QAC/C,qEAAqE;QACrE,wCAAwC;QACxC,OAAO,IAAI,SAAS,CAAC,IAAI,EAAE,aAAa,EAAE,SAAS,CAAC,CAAA;IACtD,CAAC;IAED,KAAK,CAAC,oBAAoB,CAAC,QAAgB;QACzC,MAAM,EAAE,YAAY,EAAE,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,CAAA;QACxD,MAAM,cAAc,GAAG,iBAAiB,CAAC,YAAY,CAAC,CAAA;QACtD,MAAM,EAAE,oBAAoB,EAAE,oBAAoB,EAAE,GAAG,cAAc,CAAA;QACrE,MAAM,EAAE,IAAI,EAAE,QAAQ,EAAE,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,CAAA;QAEjD,IAAI,QAAQ,IAAI,QAAQ,EAAE,CAAC;YACzB,OAAO,CAAC,IAAI,CACV,YAAY,QAAQ,cAAc,QAAQ,oBAAoB,CAC/D,CAAA;YACD,OAAO,SAAS,CAAA;QAClB,CAAC;QAED,wEAAwE;QACxE,iDAAiD;QACjD,MAAM,MAAM,GAAG,MAAM,CAAC,WAAW,CAAC,oBAAoB,CAAC,SAAS,CAAC,CAAA;QACjE,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC,EAAE,oBAAoB,CAAC,SAAS,EAAE,QAAQ,CAAC,CAAA;QACzE,MAAM,OAAO,GAAG,SAAS,CAAC,MAAM,EAAE,oBAAoB,CAAC,MAAM,CAAC,CAAA;QAC9D,MAAM,gBAAgB,GAAG,QAAQ,CAAC,OAAO,CAAC,YAAY,CAAC,CAAA;QACvD,IAAI,QAAQ,GAAG,OAAO,CAAC,MAAM,IAAI,QAAQ,EAAE,CAAC;YAC1C,OAAO,CAAC,IAAI,CACV,uBAAuB,QAAQ,4CAA4C,OAAO,CAAC,MAAM,yEAAyE,CACnK,CAAA;YACD,OAAO,SAAS,CAAA;QAClB,CAAC;QACD,MAAM,MAAM,GAAG,MAAM,CAAC,WAAW,CAC/B,oBAAoB,CAAC,SAAS,CAAC,OAAO,CAAC,YAAY,CAAC,CACrD,CAAA;QACD,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,CAClB,MAAM,EACN,CAAC,EACD,oBAAoB,CAAC,SAAS,CAAC,OAAO,CAAC,YAAY,CAAC,EACpD,QAAQ,GAAG,OAAO,CAAC,KAAK,GAAG,gBAAgB,CAC5C,CAAA;QACD,MAAM,OAAO,GAAG,SAAS,CAAC,MAAM,EAAE,oBAAoB,CAAC,MAAM,CAAC,CAAA;QAE9D,IAAI,IAAI,CAAC,IAAI,CAAC,iBAAiB,IAAI,OAAO,CAAC,KAAK,KAAK,SAAS,EAAE,CAAC;YAC/D,MAAM,IAAI,CAAC,IAAI,CAAC,UAAU,CACxB,QAAQ,EACR,OAAO,CAAC,KAAK,GAAG,OAAO,CAAC,KAAK,GAAG,gBAAgB,GAAG,CAAC,EACpD,OAAO,CAAC,KAAK,EACb,0CAA0C,QAAQ,EAAE,CACrD,CAAA;QACH,CAAC;QAED,MAAM,cAAc,GAAG,MAAM,CAAC,MAAM,CAAC,OAAO,EAAE,OAAO,EAAE;YACrD,KAAK,EAAE,OAAO,CAAC,KAAK,GAAG,OAAO,CAAC,KAAK,GAAG,gBAAgB;YACvD,YAAY,EAAE,OAAO,CAAC,KAAK,GAAG,OAAO,CAAC,KAAK,GAAG,gBAAgB,GAAG,QAAQ;SAC1E,CAAC,CAAA;QAEF,OAAO,cAAc,CAAA;IACvB,CAAC;CACF;AAED,0DAA0D;KACvD,KAAK,CAAC,GAAG,CAAC;KACV,OAAO,CAAC,MAAM,CAAC,EAAE,CAAC,WAAW,CAAC,aAAa,EAAE,MAAM,CAAC,CAAC,CAAA"}

package/esm/cramFile/file.d.ts

@@ -1,7 +1,4 @@
-/// <reference path="../../src/typings/binary-parser.d.ts" />
-/// <reference types="node" />
 import QuickLRU from 'quick-lru';
-import { Parser } from '@gmod/binary-parser';
 import { BlockHeader, CompressionMethod } from './sectionParsers';
 import CramContainer from './container';
 import CramRecord from './record';
@@ -40,7 +37,12 @@ export default class CramFile {
         buffer: Buffer;
     }>;
     stat(): Promise<import("generic-filehandle").Stats>;
-    getDefinition(): Promise<any>;
+    getDefinition(): Promise<{
+        magic: string;
+        majorVersion: number;
+        minorVersion: number;
+        fileId: string;
+    }>;
     getSamHeader(): Promise<{
         tag: string;
         data: {
@@ -49,60 +51,6 @@ export default class CramFile {
         }[];
     }[]>;
     getHeaderText(): Promise<string | undefined>;
-    getSectionParsers(): Promise<{
-        cramFileDefinition: {
-            parser: Parser<{
-                magic: string;
-                majorVersion: number;
-                minorVersion: number;
-                fileId: string;
-            }>;
-            maxLength: number;
-        };
-        cramContainerHeader1: {
-            parser: Parser<{
-                length: number;
-                refSeqId: number;
-                refSeqStart: number;
-                alignmentSpan: number;
-                numRecords: number;
-                recordCounter: number;
-                numBases: number;
-                numBlocks: number;
-                numLandmarks: number;
-            }>;
-            maxLength: number;
-        };
-        cramContainerHeader2: {
-            parser: Parser<{
-                numLandmarks: number;
-                landmarks: number[];
-                crc32: number;
-            }>;
-            maxLength: (x: number) => number;
-        };
-        cramBlockHeader: {
-            parser: Parser<BlockHeader>;
-            maxLength: number;
-        };
-        cramBlockCrc32: {
-            parser: Parser<{
-                crc32: number;
-            }>;
-            maxLength: number;
-        };
-        cramCompressionHeader: {
-            parser: Parser<import("./sectionParsers").CramCompressionHeader>;
-        };
-        cramMappedSliceHeader: {
-            parser: Parser<import("./sectionParsers").MappedSliceHeader>;
-            maxLength: (numContentIds: number) => number;
-        };
-        cramUnmappedSliceHeader: {
-            parser: Parser<import("./sectionParsers").UnmappedSliceHeader>;
-            maxLength: (numContentIds: number) => number;
-        };
-    }>;
     getContainerById(containerNumber: number): Promise<CramContainer | undefined>;
     checkCrc32(position: number, length: number, recordedCrc32: number, description: string): Promise<void>;
     /**
@@ -110,11 +58,26 @@ export default class CramFile {
      */
     containerCount(): Promise<number | undefined>;
     getContainerAtPosition(position: number): CramContainer;
-    readBlockHeader(position: number): Promise<import("./util").ParsedItem<BlockHeader> | undefined>;
+    readBlockHeader(position: number): Promise<({
+        uncompressedSize: number;
+        compressedSize: number;
+        contentId: number;
+        contentType: "FILE_HEADER" | "COMPRESSION_HEADER" | "MAPPED_SLICE_HEADER" | "UNMAPPED_SLICE_HEADER" | "EXTERNAL_DATA" | "CORE_DATA";
+        compressionMethod: CompressionMethod;
+    } & {
+        _endPosition: number;
+        _size: number;
+    }) | undefined>;
     _parseSection<T>(section: {
-        parser: Parser<T>;
         maxLength: number;
-    }, position: number, size?: number, preReadBuffer?: undefined): Promise<import("./util").ParsedItem<T> | undefined>;
+        parser: (buffer: Buffer, offset: number) => {
+            offset: number;
+            value: T;
+        };
+    }, position: number, size?: number, preReadBuffer?: undefined): Promise<(T & {
+        _endPosition: number;
+        _size: number;
+    }) | undefined>;
     _uncompress(compressionMethod: CompressionMethod, inputBuffer: Buffer, outputBuffer: Buffer): Promise<void>;
     readBlock(position: number): Promise<CramFileBlock | undefined>;
 }

package/esm/cramFile/file.js

@@ -7,7 +7,7 @@ import bzip2 from 'bzip2';
 import { XzReadableStream } from 'xz-decompress';
 import { CramMalformedError, CramUnimplementedError } from '../errors';
 import ransuncompress from '../rans';
-import { cramFileDefinition as cramFileDefinitionParser, getSectionParsers, } from './sectionParsers';
+import { cramFileDefinition, getSectionParsers, } from './sectionParsers';
 import CramContainer from './container';
 import { open } from '../io';
 import { parseItem, tinyMemoize } from './util';
@@ -20,18 +20,18 @@ function bufferToStream(buf) {
         },
     });
 }
-//source:https://abdulapopoola.com/2019/01/20/check-endianness-with-javascript/
+// source:https://abdulapopoola.com/2019/01/20/check-endianness-with-javascript/
 function getEndianness() {
     const uInt32 = new Uint32Array([0x11223344]);
     const uInt8 = new Uint8Array(uInt32.buffer);
     if (uInt8[0] === 0x44) {
-        return 0; //little-endian
+        return 0; // little-endian
     }
     else if (uInt8[0] === 0x11) {
-        return 1; //big-endian
+        return 1; // big-endian
     }
     else {
-        return 2; //mixed-endian?
+        return 2; // mixed-endian?
     }
 }
 export default class CramFile {
@@ -65,10 +65,10 @@ export default class CramFile {
     }
     // memoized
     async getDefinition() {
-        const headbytes = Buffer.allocUnsafe(cramFileDefinitionParser.maxLength);
-        await this.file.read(headbytes, 0, cramFileDefinitionParser.maxLength, 0);
-        const definition = cramFileDefinitionParser.parser.parse(headbytes)
-            .result;
+        const { maxLength, parser } = cramFileDefinition();
+        const headbytes = Buffer.allocUnsafe(maxLength);
+        await this.file.read(headbytes, 0, maxLength, 0);
+        const definition = parser(headbytes).value;
         if (definition.majorVersion !== 2 && definition.majorVersion !== 3) {
             throw new CramUnimplementedError(`CRAM version ${definition.majorVersion} not supported`);
         }
@@ -99,19 +99,15 @@ export default class CramFile {
         await this.getSamHeader();
         return this.header;
     }
-    // memoize
-    async getSectionParsers() {
-        const { majorVersion } = await this.getDefinition();
-        return getSectionParsers(majorVersion);
-    }
     async getContainerById(containerNumber) {
-        const sectionParsers = await this.getSectionParsers();
+        const { majorVersion } = await this.getDefinition();
+        const sectionParsers = getSectionParsers(majorVersion);
         let position = sectionParsers.cramFileDefinition.maxLength;
         const { size: fileSize } = await this.file.stat();
         const { cramContainerHeader1 } = sectionParsers;
         // skip with a series of reads to the proper container
         let currentContainer;
-        for (let i = 0; i <= containerNumber; i += 1) {
+        for (let i = 0; i <= containerNumber; i++) {
             // if we are about to go off the end of the file
             // and have not found that container, it does not exist
             if (position + cramContainerHeader1.maxLength + 8 >= fileSize) {
@@ -122,13 +118,12 @@ export default class CramFile {
             if (!currentHeader) {
                 throw new CramMalformedError(`container ${containerNumber} not found in file`);
             }
-            // if this is the first container, read all the blocks in the
-            // container to determine its length, because we cannot trust
-            // the container header's given length due to a bug somewhere
-            // in htslib
+            // if this is the first container, read all the blocks in the container
+            // to determine its length, because we cannot trust the container
+            // header's given length due to a bug somewhere in htslib
             if (i === 0) {
                 position = currentHeader._endPosition;
-                for (let j = 0; j < currentHeader.numBlocks; j += 1) {
+                for (let j = 0; j < currentHeader.numBlocks; j++) {
                     const block = await this.readBlock(position);
                     if (block === undefined) {
                         return undefined;
@@ -155,7 +150,8 @@ export default class CramFile {
      * @returns {Promise[number]} the number of containers in the file
      */
     async containerCount() {
-        const sectionParsers = await this.getSectionParsers();
+        const { majorVersion } = await this.getDefinition();
+        const sectionParsers = getSectionParsers(majorVersion);
         const { size: fileSize } = await this.file.stat();
         const { cramContainerHeader1 } = sectionParsers;
         let containerCount = 0;
@@ -170,7 +166,7 @@ export default class CramFile {
             // header's given length due to a bug somewhere in htslib
             if (containerCount === 0) {
                 position = currentHeader._endPosition;
-                for (let j = 0; j < currentHeader.numBlocks; j += 1) {
+                for (let j = 0; j < currentHeader.numBlocks; j++) {
                     const block = await this.readBlock(position);
                     if (block === undefined) {
                         return undefined;
@@ -190,7 +186,8 @@ export default class CramFile {
         return new CramContainer(this, position);
     }
     async readBlockHeader(position) {
-        const sectionParsers = await this.getSectionParsers();
+        const { majorVersion } = await this.getDefinition();
+        const sectionParsers = getSectionParsers(majorVersion);
         const { cramBlockHeader } = sectionParsers;
         const { size: fileSize } = await this.file.stat();
         if (position + cramBlockHeader.maxLength >= fileSize) {
@@ -266,7 +263,7 @@ export default class CramFile {
     }
     async readBlock(position) {
         const { majorVersion } = await this.getDefinition();
-        const sectionParsers = await this.getSectionParsers();
+        const sectionParsers = getSectionParsers(majorVersion);
         const blockHeader = await this.readBlockHeader(position);
         if (blockHeader === undefined) {
             return undefined;

package/esm/cramFile/file.js.map

@@ -1 +1 @@
-{"version":3,"file":"file.js","sourceRoot":"","sources":["../../src/cramFile/file.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,UAAU,CAAA;AAChC,OAAO,KAAK,MAAM,cAAc,CAAA;AAChC,OAAO,QAAQ,MAAM,WAAW,CAAA;AAChC,OAAO,SAAS,MAAM,uBAAuB,CAAA;AAE7C,mBAAmB;AACnB,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,gBAAgB,EAAE,MAAM,eAAe,CAAA;AAChD,OAAO,EAAE,kBAAkB,EAAE,sBAAsB,EAAE,MAAM,WAAW,CAAA;AACtE,OAAO,cAAc,MAAM,SAAS,CAAA;AACpC,OAAO,EAGL,kBAAkB,IAAI,wBAAwB,EAC9C,iBAAiB,GAClB,MAAM,kBAAkB,CAAA;AAEzB,OAAO,aAAa,MAAM,aAAa,CAAA;AAEvC,OAAO,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAC5B,OAAO,EAAE,SAAS,EAAE,WAAW,EAAE,MAAM,QAAQ,CAAA;AAC/C,OAAO,EAAE,eAAe,EAAE,MAAM,QAAQ,CAAA;AAIxC,SAAS,cAAc,CAAC,GAAW;IACjC,OAAO,IAAI,cAAc,CAAC;QACxB,KAAK,CAAC,UAAU;YACd,UAAU,CAAC,OAAO,CAAC,GAAG,CAAC,CAAA;YACvB,UAAU,CAAC,KAAK,EAAE,CAAA;QACpB,CAAC;KACF,CAAC,CAAA;AACJ,CAAC;AAED,+EAA+E;AAC/E,SAAS,aAAa;IACpB,MAAM,MAAM,GAAG,IAAI,WAAW,CAAC,CAAC,UAAU,CAAC,CAAC,CAAA;IAC5C,MAAM,KAAK,GAAG,IAAI,UAAU,CAAC,MAAM,CAAC,MAAM,CAAC,CAAA;IAE3C,IAAI,KAAK,CAAC,CAAC,CAAC,KAAK,IAAI,EAAE,CAAC;QACtB,OAAO,CAAC,CAAA,CAAC,eAAe;IAC1B,CAAC;SAAM,IAAI,KAAK,CAAC,CAAC,CAAC,KAAK,IAAI,EAAE,CAAC;QAC7B,OAAO,CAAC,CAAA,CAAC,YAAY;IACvB,CAAC;SAAM,CAAC;QACN,OAAO,CAAC,CAAA,CAAC,eAAe;IAC1B,CAAC;AACH,CAAC;AAiCD,MAAM,CAAC,OAAO,OAAO,QAAQ;IAW3B,YAAY,IAAkB;;QAC5B,IAAI,CAAC,IAAI,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,UAAU,CAAC,CAAA;QACtD,IAAI,CAAC,iBAAiB,GAAG,IAAI,CAAA;QAC7B,IAAI,CAAC,8BAA8B,GAAG,IAAI,CAAC,QAAQ,CAAA;QACnD,IAAI,CAAC,OAAO,GAAG;YACb,gBAAgB,EAAE,IAAI,CAAC,gBAAgB;YACvC,SAAS,EAAE,MAAA,IAAI,CAAC,SAAS,mCAAI,KAAK;SACnC,CAAA;QAED,6CAA6C;QAC7C,gEAAgE;QAChE,4DAA4D;QAC5D,qCAAqC;QACrC,IAAI,CAAC,YAAY,GAAG,IAAI,QAAQ,CAAC;YAC/B,OAAO,EAAE,IAAI,CAAC,OAAO,CAAC,SAAS;SAChC,CAAC,CAAA;QACF,IAAI,aAAa,EAAE,GAAG,CAAC,EAAE,CAAC;YACxB,MAAM,IAAI,KAAK,CAAC,mDAAmD,CAAC,CAAA;QACtE,CAAC;IACH,CAAC;IAED,8CAA8C;IAC9C,IAAI,CACF,MAAc,EACd,MAAc,EACd,MAAc,EACd,QAAgB;QAKhB,OAAO,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,QAAQ,CAAC,CAAA;IACzD,CAAC;IAED,8CAA8C;IAC9C,IAAI;QACF,OAAO,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,CAAA;IACzB,CAAC;IAED,WAAW;IACX,KAAK,CAAC,aAAa;QACjB,MAAM,SAAS,GAAG,MAAM,CAAC,WAAW,CAAC,wBAAwB,CAAC,SAAS,CAAC,CAAA;QACxE,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,CAAC,EAAE,wBAAwB,CAAC,SAAS,EAAE,CAAC,CAAC,CAAA;QACzE,MAAM,UAAU,GAAG,wBAAwB,CAAC,MAAM,CAAC,KAAK,CAAC,SAAS,CAAC;aAChE,MAAa,CAAA;QAChB,IAAI,UAAU,CAAC,YAAY,KAAK,CAAC,IAAI,UAAU,CAAC,YAAY,KAAK,CAAC,EAAE,CAAC;YACnE,MAAM,IAAI,sBAAsB,CAC9B,gBAAgB,UAAU,CAAC,YAAY,gBAAgB,CACxD,CAAA;QACH,CAAC;QACD,OAAO,UAAU,CAAA;IACnB,CAAC;IAED,UAAU;IACV,KAAK,CAAC,YAAY;QAChB,MAAM,cAAc,GAAG,MAAM,IAAI,CAAC,gBAAgB,CAAC,CAAC,CAAC,CAAA;QACrD,IAAI,CAAC,cAAc,EAAE,CAAC;YACpB,MAAM,IAAI,kBAAkB,CAAC,6BAA6B,CAAC,CAAA;QAC7D,CAAC;QAED,MAAM,UAAU,GAAG,MAAM,cAAc,CAAC,aAAa,EAAE,CAAA;QACvD,IAAI,UAAU,KAAK,SAAS,EAAE,CAAC;YAC7B,OAAO,eAAe,CAAC,EAAE,CAAC,CAAA;QAC5B,CAAC;QACD,MAAM,OAAO,GAAG,UAAU,CAAC,OAAO,CAAA;QAClC,wDAAwD;QACxD,MAAM,YAAY,GAAG,OAAO,CAAC,WAAW,CAAC,CAAC,CAAC,CAAA;QAC3C,MAAM,SAAS,GAAG,CAAC,CAAA;QACnB,mCAAmC;QACnC,iEAAiE;QACjE,8BAA8B;QAC9B,MAAM,IAAI,GAAG,OAAO,CAAC,QAAQ,CAAC,MAAM,EAAE,SAAS,EAAE,SAAS,GAAG,YAAY,CAAC,CAAA;QAC1E,IAAI,CAAC,MAAM,GAAG,IAAI,CAAA;QAClB,OAAO,eAAe,CAAC,IAAI,CAAC,CAAA;IAC9B,CAAC;IAED,KAAK,CAAC,aAAa;QACjB,MAAM,IAAI,CAAC,YAAY,EAAE,CAAA;QACzB,OAAO,IAAI,CAAC,MAAM,CAAA;IACpB,CAAC;IAED,UAAU;IACV,KAAK,CAAC,iBAAiB;QACrB,MAAM,EAAE,YAAY,EAAE,GAAG,MAAM,IAAI,CAAC,aAAa,EAAE,CAAA;QACnD,OAAO,iBAAiB,CAAC,YAAY,CAAC,CAAA;IACxC,CAAC;IAED,KAAK,CAAC,gBAAgB,CAAC,eAAuB;QAC5C,MAAM,cAAc,GAAG,MAAM,IAAI,CAAC,iBAAiB,EAAE,CAAA;QACrD,IAAI,QAAQ,GAAG,cAAc,CAAC,kBAAkB,CAAC,SAAS,CAAA;QAC1D,MAAM,EAAE,IAAI,EAAE,QAAQ,EAAE,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,CAAA;QACjD,MAAM,EAAE,oBAAoB,EAAE,GAAG,cAAc,CAAA;QAE/C,sDAAsD;QACtD,IAAI,gBAAgB,CAAA;QACpB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,eAAe,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;YAC7C,gDAAgD;YAChD,uDAAuD;YACvD,IAAI,QAAQ,GAAG,oBAAoB,CAAC,SAAS,GAAG,CAAC,IAAI,QAAQ,EAAE,CAAC;gBAC9D,OAAO,SAAS,CAAA;YAClB,CAAC;YAED,gBAAgB,GAAG,IAAI,CAAC,sBAAsB,CAAC,QAAQ,CAAC,CAAA;YACxD,MAAM,aAAa,GAAG,MAAM,gBAAgB,CAAC,SAAS,EAAE,CAAA;YACxD,IAAI,CAAC,aAAa,EAAE,CAAC;gBACnB,MAAM,IAAI,kBAAkB,CAC1B,aAAa,eAAe,oBAAoB,CACjD,CAAA;YACH,CAAC;YACD,6DAA6D;YAC7D,6DAA6D;YAC7D,6DAA6D;YAC7D,YAAY;YACZ,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC;gBACZ,QAAQ,GAAG,aAAa,CAAC,YAAY,CAAA;gBACrC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,aAAa,CAAC,SAAS,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;oBACpD,MAAM,KAAK,GAAG,MAAM,IAAI,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAA;oBAC5C,IAAI,KAAK,KAAK,SAAS,EAAE,CAAC;wBACxB,OAAO,SAAS,CAAA;oBAClB,CAAC;oBACD,QAAQ,GAAG,KAAK,CAAC,YAAY,CAAA;gBAC/B,CAAC;YACH,CAAC;iBAAM,CAAC;gBACN,8EAA8E;gBAC9E,QAAQ,IAAI,aAAa,CAAC,KAAK,GAAG,aAAa,CAAC,MAAM,CAAA;YACxD,CAAC;QACH,CAAC;QAED,OAAO,gBAAgB,CAAA;IACzB,CAAC;IAED,KAAK,CAAC,UAAU,CACd,QAAgB,EAChB,MAAc,EACd,aAAqB,EACrB,WAAmB;QAEnB,MAAM,CAAC,GAAG,MAAM,CAAC,WAAW,CAAC,MAAM,CAAC,CAAA;QACpC,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,EAAE,CAAC,EAAE,MAAM,EAAE,QAAQ,CAAC,CAAA;QAC5C,MAAM,eAAe,GAAG,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;QACzC,IAAI,eAAe,KAAK,aAAa,EAAE,CAAC;YACtC,MAAM,IAAI,kBAAkB,CAC1B,mBAAmB,WAAW,sBAAsB,aAAa,4BAA4B,eAAe,EAAE,CAC/G,CAAA;QACH,CAAC;IACH,CAAC;IAED;;OAEG;IACH,KAAK,CAAC,cAAc;QAClB,MAAM,cAAc,GAAG,MAAM,IAAI,CAAC,iBAAiB,EAAE,CAAA;QACrD,MAAM,EAAE,IAAI,EAAE,QAAQ,EAAE,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,CAAA;QACjD,MAAM,EAAE,oBAAoB,EAAE,GAAG,cAAc,CAAA;QAE/C,IAAI,cAAc,GAAG,CAAC,CAAA;QACtB,IAAI,QAAQ,GAAG,cAAc,CAAC,kBAAkB,CAAC,SAAS,CAAA;QAC1D,OAAO,QAAQ,GAAG,oBAAoB,CAAC,SAAS,GAAG,CAAC,GAAG,QAAQ,EAAE,CAAC;YAChE,MAAM,aAAa,GACjB,MAAM,IAAI,CAAC,sBAAsB,CAAC,QAAQ,CAAC,CAAC,SAAS,EAAE,CAAA;YACzD,IAAI,CAAC,aAAa,EAAE,CAAC;gBACnB,MAAK;YACP,CAAC;YACD,6DAA6D;YAC7D,mDAAmD;YACnD,yDAAyD;YACzD,IAAI,cAAc,KAAK,CAAC,EAAE,CAAC;gBACzB,QAAQ,GAAG,aAAa,CAAC,YAAY,CAAA;gBACrC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,aAAa,CAAC,SAAS,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;oBACpD,MAAM,KAAK,GAAG,MAAM,IAAI,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAA;oBAC5C,IAAI,KAAK,KAAK,SAAS,EAAE,CAAC;wBACxB,OAAO,SAAS,CAAA;oBAClB,CAAC;oBACD,QAAQ,GAAG,KAAK,CAAC,YAAY,CAAA;gBAC/B,CAAC;YACH,CAAC;iBAAM,CAAC;gBACN,8EAA8E;gBAC9E,QAAQ,IAAI,aAAa,CAAC,KAAK,GAAG,aAAa,CAAC,MAAM,CAAA;YACxD,CAAC;YACD,cAAc,IAAI,CAAC,CAAA;QACrB,CAAC;QAED,OAAO,cAAc,CAAA;IACvB,CAAC;IAED,sBAAsB,CAAC,QAAgB;QACrC,OAAO,IAAI,aAAa,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAA;IAC1C,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,QAAgB;QACpC,MAAM,cAAc,GAAG,MAAM,IAAI,CAAC,iBAAiB,EAAE,CAAA;QACrD,MAAM,EAAE,eAAe,EAAE,GAAG,cAAc,CAAA;QAC1C,MAAM,EAAE,IAAI,EAAE,QAAQ,EAAE,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,CAAA;QAEjD,IAAI,QAAQ,GAAG,eAAe,CAAC,SAAS,IAAI,QAAQ,EAAE,CAAC;YACrD,OAAO,SAAS,CAAA;QAClB,CAAC;QAED,MAAM,MAAM,GAAG,MAAM,CAAC,WAAW,CAAC,eAAe,CAAC,SAAS,CAAC,CAAA;QAC5D,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC,EAAE,eAAe,CAAC,SAAS,EAAE,QAAQ,CAAC,CAAA;QACpE,OAAO,SAAS,CAAC,MAAM,EAAE,eAAe,CAAC,MAAM,EAAE,CAAC,EAAE,QAAQ,CAAC,CAAA;IAC/D,CAAC;IAED,KAAK,CAAC,aAAa,CACjB,OAAiD,EACjD,QAAgB,EAChB,IAAI,GAAG,OAAO,CAAC,SAAS,EACxB,aAAa,GAAG,SAAS;QAEzB,IAAI,MAAM,CAAA;QACV,IAAI,aAAa,EAAE,CAAC;YAClB,MAAM,GAAG,aAAa,CAAA;QACxB,CAAC;aAAM,CAAC;YACN,MAAM,EAAE,IAAI,EAAE,QAAQ,EAAE,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,CAAA;YACjD,IAAI,QAAQ,GAAG,IAAI,IAAI,QAAQ,EAAE,CAAC;gBAChC,OAAO,SAAS,CAAA;YAClB,CAAC;YACD,MAAM,GAAG,MAAM,CAAC,WAAW,CAAC,IAAI,CAAC,CAAA;YACjC,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC,EAAE,IAAI,EAAE,QAAQ,CAAC,CAAA;QACjD,CAAC;QACD,MAAM,IAAI,GAAG,SAAS,CAAC,MAAM,EAAE,OAAO,CAAC,MAAM,EAAE,CAAC,EAAE,QAAQ,CAAC,CAAA;QAC3D,IAAI,IAAI,CAAC,KAAK,KAAK,IAAI,EAAE,CAAC;YACxB,MAAM,IAAI,kBAAkB,CAC1B,sCAAsC,IAAI,+BAA+B,IAAI,CAAC,KAAK,EAAE,CACtF,CAAA;QACH,CAAC;QACD,OAAO,IAAI,CAAA;IACb,CAAC;IAED,KAAK,CAAC,WAAW,CACf,iBAAoC,EACpC,WAAmB,EACnB,YAAoB;QAEpB,IAAI,iBAAiB,KAAK,MAAM,EAAE,CAAC;YACjC,MAAM,MAAM,GAAG,KAAK,CAAC,WAAW,CAAC,CAAA;YACjC,MAAM,CAAC,IAAI,CAAC,YAAY,CAAC,CAAA;QAC3B,CAAC;aAAM,IAAI,iBAAiB,KAAK,OAAO,EAAE,CAAC;YACzC,MAAM,IAAI,GAAG,KAAK,CAAC,KAAK,CAAC,WAAW,CAAC,CAAA;YACrC,IAAI,IAAI,GAAG,KAAK,CAAC,MAAM,CAAC,IAAI,CAAC,CAAA;YAC7B,IAAI,CAAC,GAAG,CAAC,CAAA;YACT,IAAI,KAAK,CAAA;YACT,GAAG,CAAC;gBACF,KAAK,GAAG,KAAK,CAAC,UAAU,CAAC,IAAI,EAAE,IAAI,CAAC,CAAA;gBACpC,IAAI,KAAK,IAAI,CAAC,CAAC,EAAE,CAAC;oBAChB,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,IAAI,CAAC,YAAY,EAAE,CAAC,CAAC,CAAA;oBACxC,CAAC,IAAI,KAAK,CAAC,MAAM,CAAA;oBACjB,IAAI,IAAI,KAAK,CAAC,MAAM,CAAA;gBACtB,CAAC;YACH,CAAC,QAAQ,KAAK,IAAI,CAAC,CAAC,EAAC;QACvB,CAAC;aAAM,IAAI,iBAAiB,KAAK,MAAM,EAAE,CAAC;YACxC,MAAM,oBAAoB,GAAG,IAAI,QAAQ,CACvC,IAAI,gBAAgB,CAAC,cAAc,CAAC,WAAW,CAAC,CAAC,CAClD,CAAA;YACD,MAAM,GAAG,GAAG,MAAM,CAAC,IAAI,CAAC,MAAM,oBAAoB,CAAC,WAAW,EAAE,CAAC,CAAA;YACjE,GAAG,CAAC,IAAI,CAAC,YAAY,CAAC,CAAA;QACxB,CAAC;aAAM,IAAI,iBAAiB,KAAK,MAAM,EAAE,CAAC;YACxC,cAAc,CAAC,WAAW,EAAE,YAAY,CAAC,CAAA;YACzC,2CAA2C;YAC3C,uDAAuD;QACzD,CAAC;aAAM,IAAI,iBAAiB,KAAK,UAAU,EAAE,CAAC;YAC5C,SAAS,CAAC,gBAAgB,CAAC,WAAW,EAAE,YAAY,CAAC,CAAA;QACvD,CAAC;aAAM,IAAI,iBAAiB,KAAK,OAAO,EAAE,CAAC;YACzC,SAAS,CAAC,gBAAgB,CAAC,WAAW,EAAE,YAAY,CAAC,CAAA;QACvD,CAAC;aAAM,IAAI,iBAAiB,KAAK,SAAS,EAAE,CAAC;YAC3C,SAAS,CAAC,kBAAkB,CAAC,WAAW,EAAE,YAAY,CAAC,CAAA;QACzD,CAAC;aAAM,IAAI,iBAAiB,KAAK,MAAM,EAAE,CAAC;YACxC,SAAS,CAAC,eAAe,CAAC,WAAW,EAAE,YAAY,CAAC,CAAA;QACtD,CAAC;aAAM,CAAC;YACN,MAAM,IAAI,sBAAsB,CAC9B,GAAG,iBAAiB,oCAAoC,CACzD,CAAA;QACH,CAAC;IACH,CAAC;IAED,KAAK,CAAC,SAAS,CAAC,QAAgB;QAC9B,MAAM,EAAE,YAAY,EAAE,GAAG,MAAM,IAAI,CAAC,aAAa,EAAE,CAAA;QACnD,MAAM,cAAc,GAAG,MAAM,IAAI,CAAC,iBAAiB,EAAE,CAAA;QACrD,MAAM,WAAW,GAAG,MAAM,IAAI,CAAC,eAAe,CAAC,QAAQ,CAAC,CAAA;QACxD,IAAI,WAAW,KAAK,SAAS,EAAE,CAAC;YAC9B,OAAO,SAAS,CAAA;QAClB,CAAC;QACD,MAAM,oBAAoB,GAAG,WAAW,CAAC,YAAY,CAAA;QAErD,MAAM,gBAAgB,GAAG,MAAM,CAAC,WAAW,CAAC,WAAW,CAAC,gBAAgB,CAAC,CAAA;QAEzE,MAAM,KAAK,GAAkB;YAC3B,GAAG,WAAW;YACd,YAAY,EAAE,oBAAoB;YAClC,eAAe,EAAE,oBAAoB;YACrC,OAAO,EAAE,gBAAgB;SAC1B,CAAA;QAED,IAAI,WAAW,CAAC,iBAAiB,KAAK,KAAK,EAAE,CAAC;YAC5C,MAAM,cAAc,GAAG,MAAM,CAAC,WAAW,CAAC,WAAW,CAAC,cAAc,CAAC,CAAA;YACrE,MAAM,IAAI,CAAC,IAAI,CACb,cAAc,EACd,CAAC,EACD,WAAW,CAAC,cAAc,EAC1B,oBAAoB,CACrB,CAAA;YAED,MAAM,IAAI,CAAC,WAAW,CACpB,WAAW,CAAC,iBAAiB,EAC7B,cAAc,EACd,gBAAgB,CACjB,CAAA;QACH,CAAC;aAAM,CAAC;YACN,MAAM,IAAI,CAAC,IAAI,CACb,gBAAgB,EAChB,CAAC,EACD,WAAW,CAAC,gBAAgB,EAC5B,oBAAoB,CACrB,CAAA;QACH,CAAC;QAED,IAAI,YAAY,IAAI,CAAC,EAAE,CAAC;YACtB,kBAAkB;YAClB,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,aAAa,CAClC,cAAc,CAAC,cAAc,EAC7B,oBAAoB,GAAG,WAAW,CAAC,cAAc,CAClD,CAAA;YACD,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;gBACtB,OAAO,SAAS,CAAA;YAClB,CAAC;YACD,KAAK,CAAC,KAAK,GAAG,GAAG,CAAC,KAAK,CAAA;YAEvB,6BAA6B;YAC7B,IAAI,IAAI,CAAC,iBAAiB,EAAE,CAAC;gBAC3B,MAAM,IAAI,CAAC,UAAU,CACnB,QAAQ,EACR,WAAW,CAAC,KAAK,GAAG,WAAW,CAAC,cAAc,EAC9C,GAAG,CAAC,KAAK,EACT,YAAY,CACb,CAAA;YACH,CAAC;YAED,wDAAwD;YACxD,KAAK,CAAC,YAAY,GAAG,GAAG,CAAC,YAAY,CAAA;YACrC,KAAK,CAAC,KAAK;gBACT,KAAK,CAAC,cAAc,GAAG,cAAc,CAAC,cAAc,CAAC,SAAS,CAAA;QAClE,CAAC;aAAM,CAAC;YACN,KAAK,CAAC,YAAY,GAAG,oBAAoB,GAAG,KAAK,CAAC,cAAc,CAAA;YAChE,KAAK,CAAC,KAAK,GAAG,KAAK,CAAC,cAAc,CAAA;QACpC,CAAC;QAED,OAAO,KAAK,CAAA;IACd,CAAC;CACF;AAED,8CAA8C;KAC3C,KAAK,CAAC,GAAG,CAAC;KACV,OAAO,CAAC,MAAM,CAAC,EAAE,CAAC,WAAW,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAAA"}
+{"version":3,"file":"file.js","sourceRoot":"","sources":["../../src/cramFile/file.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,UAAU,CAAA;AAChC,OAAO,KAAK,MAAM,cAAc,CAAA;AAChC,OAAO,QAAQ,MAAM,WAAW,CAAA;AAChC,OAAO,SAAS,MAAM,uBAAuB,CAAA;AAC7C,mBAAmB;AACnB,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,gBAAgB,EAAE,MAAM,eAAe,CAAA;AAChD,OAAO,EAAE,kBAAkB,EAAE,sBAAsB,EAAE,MAAM,WAAW,CAAA;AACtE,OAAO,cAAc,MAAM,SAAS,CAAA;AACpC,OAAO,EAGL,kBAAkB,EAClB,iBAAiB,GAClB,MAAM,kBAAkB,CAAA;AAEzB,OAAO,aAAa,MAAM,aAAa,CAAA;AAEvC,OAAO,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAC5B,OAAO,EAAE,SAAS,EAAE,WAAW,EAAE,MAAM,QAAQ,CAAA;AAC/C,OAAO,EAAE,eAAe,EAAE,MAAM,QAAQ,CAAA;AAIxC,SAAS,cAAc,CAAC,GAAW;IACjC,OAAO,IAAI,cAAc,CAAC;QACxB,KAAK,CAAC,UAAU;YACd,UAAU,CAAC,OAAO,CAAC,GAAG,CAAC,CAAA;YACvB,UAAU,CAAC,KAAK,EAAE,CAAA;QACpB,CAAC;KACF,CAAC,CAAA;AACJ,CAAC;AAED,gFAAgF;AAChF,SAAS,aAAa;IACpB,MAAM,MAAM,GAAG,IAAI,WAAW,CAAC,CAAC,UAAU,CAAC,CAAC,CAAA;IAC5C,MAAM,KAAK,GAAG,IAAI,UAAU,CAAC,MAAM,CAAC,MAAM,CAAC,CAAA;IAE3C,IAAI,KAAK,CAAC,CAAC,CAAC,KAAK,IAAI,EAAE,CAAC;QACtB,OAAO,CAAC,CAAA,CAAC,gBAAgB;IAC3B,CAAC;SAAM,IAAI,KAAK,CAAC,CAAC,CAAC,KAAK,IAAI,EAAE,CAAC;QAC7B,OAAO,CAAC,CAAA,CAAC,aAAa;IACxB,CAAC;SAAM,CAAC;QACN,OAAO,CAAC,CAAA,CAAC,gBAAgB;IAC3B,CAAC;AACH,CAAC;AA4BD,MAAM,CAAC,OAAO,OAAO,QAAQ;IAW3B,YAAY,IAAkB;;QAC5B,IAAI,CAAC,IAAI,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,UAAU,CAAC,CAAA;QACtD,IAAI,CAAC,iBAAiB,GAAG,IAAI,CAAA;QAC7B,IAAI,CAAC,8BAA8B,GAAG,IAAI,CAAC,QAAQ,CAAA;QACnD,IAAI,CAAC,OAAO,GAAG;YACb,gBAAgB,EAAE,IAAI,CAAC,gBAAgB;YACvC,SAAS,EAAE,MAAA,IAAI,CAAC,SAAS,mCAAI,KAAK;SACnC,CAAA;QAED,6CAA6C;QAC7C,gEAAgE;QAChE,4DAA4D;QAC5D,qCAAqC;QACrC,IAAI,CAAC,YAAY,GAAG,IAAI,QAAQ,CAAC;YAC/B,OAAO,EAAE,IAAI,CAAC,OAAO,CAAC,SAAS;SAChC,CAAC,CAAA;QACF,IAAI,aAAa,EAAE,GAAG,CAAC,EAAE,CAAC;YACxB,MAAM,IAAI,KAAK,CAAC,mDAAmD,CAAC,CAAA;QACtE,CAAC;IACH,CAAC;IAED,8CAA8C;IAC9C,IAAI,CAAC,MAAc,EAAE,MAAc,EAAE,MAAc,EAAE,QAAgB;QACnE,OAAO,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,QAAQ,CAAC,CAAA;IACzD,CAAC;IAED,8CAA8C;IAC9C,IAAI;QACF,OAAO,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,CAAA;IACzB,CAAC;IAED,WAAW;IACX,KAAK,CAAC,aAAa;QACjB,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,GAAG,kBAAkB,EAAE,CAAA;QAClD,MAAM,SAAS,GAAG,MAAM,CAAC,WAAW,CAAC,SAAS,CAAC,CAAA;QAC/C,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,CAAC,EAAE,SAAS,EAAE,CAAC,CAAC,CAAA;QAChD,MAAM,UAAU,GAAG,MAAM,CAAC,SAAS,CAAC,CAAC,KAAK,CAAA;QAC1C,IAAI,UAAU,CAAC,YAAY,KAAK,CAAC,IAAI,UAAU,CAAC,YAAY,KAAK,CAAC,EAAE,CAAC;YACnE,MAAM,IAAI,sBAAsB,CAC9B,gBAAgB,UAAU,CAAC,YAAY,gBAAgB,CACxD,CAAA;QACH,CAAC;QACD,OAAO,UAAU,CAAA;IACnB,CAAC;IAED,UAAU;IACV,KAAK,CAAC,YAAY;QAChB,MAAM,cAAc,GAAG,MAAM,IAAI,CAAC,gBAAgB,CAAC,CAAC,CAAC,CAAA;QACrD,IAAI,CAAC,cAAc,EAAE,CAAC;YACpB,MAAM,IAAI,kBAAkB,CAAC,6BAA6B,CAAC,CAAA;QAC7D,CAAC;QAED,MAAM,UAAU,GAAG,MAAM,cAAc,CAAC,aAAa,EAAE,CAAA;QACvD,IAAI,UAAU,KAAK,SAAS,EAAE,CAAC;YAC7B,OAAO,eAAe,CAAC,EAAE,CAAC,CAAA;QAC5B,CAAC;QACD,MAAM,OAAO,GAAG,UAAU,CAAC,OAAO,CAAA;QAClC,wDAAwD;QACxD,MAAM,YAAY,GAAG,OAAO,CAAC,WAAW,CAAC,CAAC,CAAC,CAAA;QAC3C,MAAM,SAAS,GAAG,CAAC,CAAA;QACnB,mCAAmC;QACnC,iEAAiE;QACjE,8BAA8B;QAC9B,MAAM,IAAI,GAAG,OAAO,CAAC,QAAQ,CAAC,MAAM,EAAE,SAAS,EAAE,SAAS,GAAG,YAAY,CAAC,CAAA;QAC1E,IAAI,CAAC,MAAM,GAAG,IAAI,CAAA;QAClB,OAAO,eAAe,CAAC,IAAI,CAAC,CAAA;IAC9B,CAAC;IAED,KAAK,CAAC,aAAa;QACjB,MAAM,IAAI,CAAC,YAAY,EAAE,CAAA;QACzB,OAAO,IAAI,CAAC,MAAM,CAAA;IACpB,CAAC;IAED,KAAK,CAAC,gBAAgB,CAAC,eAAuB;QAC5C,MAAM,EAAE,YAAY,EAAE,GAAG,MAAM,IAAI,CAAC,aAAa,EAAE,CAAA;QACnD,MAAM,cAAc,GAAG,iBAAiB,CAAC,YAAY,CAAC,CAAA;QACtD,IAAI,QAAQ,GAAG,cAAc,CAAC,kBAAkB,CAAC,SAAS,CAAA;QAC1D,MAAM,EAAE,IAAI,EAAE,QAAQ,EAAE,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,CAAA;QACjD,MAAM,EAAE,oBAAoB,EAAE,GAAG,cAAc,CAAA;QAE/C,sDAAsD;QACtD,IAAI,gBAAgB,CAAA;QACpB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,eAAe,EAAE,CAAC,EAAE,EAAE,CAAC;YAC1C,gDAAgD;YAChD,uDAAuD;YACvD,IAAI,QAAQ,GAAG,oBAAoB,CAAC,SAAS,GAAG,CAAC,IAAI,QAAQ,EAAE,CAAC;gBAC9D,OAAO,SAAS,CAAA;YAClB,CAAC;YAED,gBAAgB,GAAG,IAAI,CAAC,sBAAsB,CAAC,QAAQ,CAAC,CAAA;YACxD,MAAM,aAAa,GAAG,MAAM,gBAAgB,CAAC,SAAS,EAAE,CAAA;YACxD,IAAI,CAAC,aAAa,EAAE,CAAC;gBACnB,MAAM,IAAI,kBAAkB,CAC1B,aAAa,eAAe,oBAAoB,CACjD,CAAA;YACH,CAAC;YACD,uEAAuE;YACvE,iEAAiE;YACjE,yDAAyD;YACzD,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC;gBACZ,QAAQ,GAAG,aAAa,CAAC,YAAY,CAAA;gBACrC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,aAAa,CAAC,SAAS,EAAE,CAAC,EAAE,EAAE,CAAC;oBACjD,MAAM,KAAK,GAAG,MAAM,IAAI,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAA;oBAC5C,IAAI,KAAK,KAAK,SAAS,EAAE,CAAC;wBACxB,OAAO,SAAS,CAAA;oBAClB,CAAC;oBACD,QAAQ,GAAG,KAAK,CAAC,YAAY,CAAA;gBAC/B,CAAC;YACH,CAAC;iBAAM,CAAC;gBACN,8EAA8E;gBAC9E,QAAQ,IAAI,aAAa,CAAC,KAAK,GAAG,aAAa,CAAC,MAAM,CAAA;YACxD,CAAC;QACH,CAAC;QAED,OAAO,gBAAgB,CAAA;IACzB,CAAC;IAED,KAAK,CAAC,UAAU,CACd,QAAgB,EAChB,MAAc,EACd,aAAqB,EACrB,WAAmB;QAEnB,MAAM,CAAC,GAAG,MAAM,CAAC,WAAW,CAAC,MAAM,CAAC,CAAA;QACpC,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,EAAE,CAAC,EAAE,MAAM,EAAE,QAAQ,CAAC,CAAA;QAC5C,MAAM,eAAe,GAAG,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;QACzC,IAAI,eAAe,KAAK,aAAa,EAAE,CAAC;YACtC,MAAM,IAAI,kBAAkB,CAC1B,mBAAmB,WAAW,sBAAsB,aAAa,4BAA4B,eAAe,EAAE,CAC/G,CAAA;QACH,CAAC;IACH,CAAC;IAED;;OAEG;IACH,KAAK,CAAC,cAAc;QAClB,MAAM,EAAE,YAAY,EAAE,GAAG,MAAM,IAAI,CAAC,aAAa,EAAE,CAAA;QACnD,MAAM,cAAc,GAAG,iBAAiB,CAAC,YAAY,CAAC,CAAA;QACtD,MAAM,EAAE,IAAI,EAAE,QAAQ,EAAE,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,CAAA;QACjD,MAAM,EAAE,oBAAoB,EAAE,GAAG,cAAc,CAAA;QAE/C,IAAI,cAAc,GAAG,CAAC,CAAA;QACtB,IAAI,QAAQ,GAAG,cAAc,CAAC,kBAAkB,CAAC,SAAS,CAAA;QAC1D,OAAO,QAAQ,GAAG,oBAAoB,CAAC,SAAS,GAAG,CAAC,GAAG,QAAQ,EAAE,CAAC;YAChE,MAAM,aAAa,GACjB,MAAM,IAAI,CAAC,sBAAsB,CAAC,QAAQ,CAAC,CAAC,SAAS,EAAE,CAAA;YACzD,IAAI,CAAC,aAAa,EAAE,CAAC;gBACnB,MAAK;YACP,CAAC;YACD,6DAA6D;YAC7D,mDAAmD;YACnD,yDAAyD;YACzD,IAAI,cAAc,KAAK,CAAC,EAAE,CAAC;gBACzB,QAAQ,GAAG,aAAa,CAAC,YAAY,CAAA;gBACrC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,aAAa,CAAC,SAAS,EAAE,CAAC,EAAE,EAAE,CAAC;oBACjD,MAAM,KAAK,GAAG,MAAM,IAAI,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAA;oBAC5C,IAAI,KAAK,KAAK,SAAS,EAAE,CAAC;wBACxB,OAAO,SAAS,CAAA;oBAClB,CAAC;oBACD,QAAQ,GAAG,KAAK,CAAC,YAAY,CAAA;gBAC/B,CAAC;YACH,CAAC;iBAAM,CAAC;gBACN,8EAA8E;gBAC9E,QAAQ,IAAI,aAAa,CAAC,KAAK,GAAG,aAAa,CAAC,MAAM,CAAA;YACxD,CAAC;YACD,cAAc,IAAI,CAAC,CAAA;QACrB,CAAC;QAED,OAAO,cAAc,CAAA;IACvB,CAAC;IAED,sBAAsB,CAAC,QAAgB;QACrC,OAAO,IAAI,aAAa,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAA;IAC1C,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,QAAgB;QACpC,MAAM,EAAE,YAAY,EAAE,GAAG,MAAM,IAAI,CAAC,aAAa,EAAE,CAAA;QACnD,MAAM,cAAc,GAAG,iBAAiB,CAAC,YAAY,CAAC,CAAA;QACtD,MAAM,EAAE,eAAe,EAAE,GAAG,cAAc,CAAA;QAC1C,MAAM,EAAE,IAAI,EAAE,QAAQ,EAAE,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,CAAA;QAEjD,IAAI,QAAQ,GAAG,eAAe,CAAC,SAAS,IAAI,QAAQ,EAAE,CAAC;YACrD,OAAO,SAAS,CAAA;QAClB,CAAC;QAED,MAAM,MAAM,GAAG,MAAM,CAAC,WAAW,CAAC,eAAe,CAAC,SAAS,CAAC,CAAA;QAC5D,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC,EAAE,eAAe,CAAC,SAAS,EAAE,QAAQ,CAAC,CAAA;QACpE,OAAO,SAAS,CAAC,MAAM,EAAE,eAAe,CAAC,MAAM,EAAE,CAAC,EAAE,QAAQ,CAAC,CAAA;IAC/D,CAAC;IAED,KAAK,CAAC,aAAa,CACjB,OAGC,EACD,QAAgB,EAChB,IAAI,GAAG,OAAO,CAAC,SAAS,EACxB,aAAa,GAAG,SAAS;QAEzB,IAAI,MAAM,CAAA;QACV,IAAI,aAAa,EAAE,CAAC;YAClB,MAAM,GAAG,aAAa,CAAA;QACxB,CAAC;aAAM,CAAC;YACN,MAAM,EAAE,IAAI,EAAE,QAAQ,EAAE,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,CAAA;YACjD,IAAI,QAAQ,GAAG,IAAI,IAAI,QAAQ,EAAE,CAAC;gBAChC,OAAO,SAAS,CAAA;YAClB,CAAC;YACD,MAAM,GAAG,MAAM,CAAC,WAAW,CAAC,IAAI,CAAC,CAAA;YACjC,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC,EAAE,IAAI,EAAE,QAAQ,CAAC,CAAA;QACjD,CAAC;QACD,MAAM,IAAI,GAAG,SAAS,CAAC,MAAM,EAAE,OAAO,CAAC,MAAM,EAAE,CAAC,EAAE,QAAQ,CAAC,CAAA;QAC3D,IAAI,IAAI,CAAC,KAAK,KAAK,IAAI,EAAE,CAAC;YACxB,MAAM,IAAI,kBAAkB,CAC1B,sCAAsC,IAAI,+BAA+B,IAAI,CAAC,KAAK,EAAE,CACtF,CAAA;QACH,CAAC;QACD,OAAO,IAAI,CAAA;IACb,CAAC;IAED,KAAK,CAAC,WAAW,CACf,iBAAoC,EACpC,WAAmB,EACnB,YAAoB;QAEpB,IAAI,iBAAiB,KAAK,MAAM,EAAE,CAAC;YACjC,MAAM,MAAM,GAAG,KAAK,CAAC,WAAW,CAAC,CAAA;YACjC,MAAM,CAAC,IAAI,CAAC,YAAY,CAAC,CAAA;QAC3B,CAAC;aAAM,IAAI,iBAAiB,KAAK,OAAO,EAAE,CAAC;YACzC,MAAM,IAAI,GAAG,KAAK,CAAC,KAAK,CAAC,WAAW,CAAC,CAAA;YACrC,IAAI,IAAI,GAAG,KAAK,CAAC,MAAM,CAAC,IAAI,CAAC,CAAA;YAC7B,IAAI,CAAC,GAAG,CAAC,CAAA;YACT,IAAI,KAAK,CAAA;YACT,GAAG,CAAC;gBACF,KAAK,GAAG,KAAK,CAAC,UAAU,CAAC,IAAI,EAAE,IAAI,CAAC,CAAA;gBACpC,IAAI,KAAK,IAAI,CAAC,CAAC,EAAE,CAAC;oBAChB,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,IAAI,CAAC,YAAY,EAAE,CAAC,CAAC,CAAA;oBACxC,CAAC,IAAI,KAAK,CAAC,MAAM,CAAA;oBACjB,IAAI,IAAI,KAAK,CAAC,MAAM,CAAA;gBACtB,CAAC;YACH,CAAC,QAAQ,KAAK,IAAI,CAAC,CAAC,EAAC;QACvB,CAAC;aAAM,IAAI,iBAAiB,KAAK,MAAM,EAAE,CAAC;YACxC,MAAM,oBAAoB,GAAG,IAAI,QAAQ,CACvC,IAAI,gBAAgB,CAAC,cAAc,CAAC,WAAW,CAAC,CAAC,CAClD,CAAA;YACD,MAAM,GAAG,GAAG,MAAM,CAAC,IAAI,CAAC,MAAM,oBAAoB,CAAC,WAAW,EAAE,CAAC,CAAA;YACjE,GAAG,CAAC,IAAI,CAAC,YAAY,CAAC,CAAA;QACxB,CAAC;aAAM,IAAI,iBAAiB,KAAK,MAAM,EAAE,CAAC;YACxC,cAAc,CAAC,WAAW,EAAE,YAAY,CAAC,CAAA;YACzC,2CAA2C;YAC3C,uDAAuD;QACzD,CAAC;aAAM,IAAI,iBAAiB,KAAK,UAAU,EAAE,CAAC;YAC5C,SAAS,CAAC,gBAAgB,CAAC,WAAW,EAAE,YAAY,CAAC,CAAA;QACvD,CAAC;aAAM,IAAI,iBAAiB,KAAK,OAAO,EAAE,CAAC;YACzC,SAAS,CAAC,gBAAgB,CAAC,WAAW,EAAE,YAAY,CAAC,CAAA;QACvD,CAAC;aAAM,IAAI,iBAAiB,KAAK,SAAS,EAAE,CAAC;YAC3C,SAAS,CAAC,kBAAkB,CAAC,WAAW,EAAE,YAAY,CAAC,CAAA;QACzD,CAAC;aAAM,IAAI,iBAAiB,KAAK,MAAM,EAAE,CAAC;YACxC,SAAS,CAAC,eAAe,CAAC,WAAW,EAAE,YAAY,CAAC,CAAA;QACtD,CAAC;aAAM,CAAC;YACN,MAAM,IAAI,sBAAsB,CAC9B,GAAG,iBAAiB,oCAAoC,CACzD,CAAA;QACH,CAAC;IACH,CAAC;IAED,KAAK,CAAC,SAAS,CAAC,QAAgB;QAC9B,MAAM,EAAE,YAAY,EAAE,GAAG,MAAM,IAAI,CAAC,aAAa,EAAE,CAAA;QACnD,MAAM,cAAc,GAAG,iBAAiB,CAAC,YAAY,CAAC,CAAA;QACtD,MAAM,WAAW,GAAG,MAAM,IAAI,CAAC,eAAe,CAAC,QAAQ,CAAC,CAAA;QACxD,IAAI,WAAW,KAAK,SAAS,EAAE,CAAC;YAC9B,OAAO,SAAS,CAAA;QAClB,CAAC;QACD,MAAM,oBAAoB,GAAG,WAAW,CAAC,YAAY,CAAA;QAErD,MAAM,gBAAgB,GAAG,MAAM,CAAC,WAAW,CAAC,WAAW,CAAC,gBAAgB,CAAC,CAAA;QAEzE,MAAM,KAAK,GAAkB;YAC3B,GAAG,WAAW;YACd,YAAY,EAAE,oBAAoB;YAClC,eAAe,EAAE,oBAAoB;YACrC,OAAO,EAAE,gBAAgB;SAC1B,CAAA;QAED,IAAI,WAAW,CAAC,iBAAiB,KAAK,KAAK,EAAE,CAAC;YAC5C,MAAM,cAAc,GAAG,MAAM,CAAC,WAAW,CAAC,WAAW,CAAC,cAAc,CAAC,CAAA;YACrE,MAAM,IAAI,CAAC,IAAI,CACb,cAAc,EACd,CAAC,EACD,WAAW,CAAC,cAAc,EAC1B,oBAAoB,CACrB,CAAA;YAED,MAAM,IAAI,CAAC,WAAW,CACpB,WAAW,CAAC,iBAAiB,EAC7B,cAAc,EACd,gBAAgB,CACjB,CAAA;QACH,CAAC;aAAM,CAAC;YACN,MAAM,IAAI,CAAC,IAAI,CACb,gBAAgB,EAChB,CAAC,EACD,WAAW,CAAC,gBAAgB,EAC5B,oBAAoB,CACrB,CAAA;QACH,CAAC;QAED,IAAI,YAAY,IAAI,CAAC,EAAE,CAAC;YACtB,kBAAkB;YAClB,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,aAAa,CAClC,cAAc,CAAC,cAAc,EAC7B,oBAAoB,GAAG,WAAW,CAAC,cAAc,CAClD,CAAA;YACD,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;gBACtB,OAAO,SAAS,CAAA;YAClB,CAAC;YACD,KAAK,CAAC,KAAK,GAAG,GAAG,CAAC,KAAK,CAAA;YAEvB,6BAA6B;YAC7B,IAAI,IAAI,CAAC,iBAAiB,EAAE,CAAC;gBAC3B,MAAM,IAAI,CAAC,UAAU,CACnB,QAAQ,EACR,WAAW,CAAC,KAAK,GAAG,WAAW,CAAC,cAAc,EAC9C,GAAG,CAAC,KAAK,EACT,YAAY,CACb,CAAA;YACH,CAAC;YAED,wDAAwD;YACxD,KAAK,CAAC,YAAY,GAAG,GAAG,CAAC,YAAY,CAAA;YACrC,KAAK,CAAC,KAAK;gBACT,KAAK,CAAC,cAAc,GAAG,cAAc,CAAC,cAAc,CAAC,SAAS,CAAA;QAClE,CAAC;aAAM,CAAC;YACN,KAAK,CAAC,YAAY,GAAG,oBAAoB,GAAG,KAAK,CAAC,cAAc,CAAA;YAChE,KAAK,CAAC,KAAK,GAAG,KAAK,CAAC,cAAc,CAAA;QACpC,CAAC;QAED,OAAO,KAAK,CAAA;IACd,CAAC;CACF;AAED,8CAA8C;KAC3C,KAAK,CAAC,GAAG,CAAC;KACV,OAAO,CAAC,MAAM,CAAC,EAAE,CAAC,WAAW,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAAA"}

package/esm/cramFile/record.d.ts

@@ -1,5 +1,5 @@
 import CramContainerCompressionScheme from './container/compressionScheme';
-import decodeRecord from './slice/decodeRecord';
+import type decodeRecord from './slice/decodeRecord';
 export interface RefRegion {
     start: number;
     end: number;

package/esm/cramFile/sectionParsers.d.ts

@@ -1,14 +1,50 @@
-/// <reference path="../../src/typings/binary-parser.d.ts" />
-import { Parser } from '@gmod/binary-parser';
 import { TupleOf } from '../typescript';
-import { ParsedItem } from './util';
 import { DataSeriesEncodingMap } from './codecs/dataSeriesTypes';
 import { CramEncoding } from './encoding';
-declare const cramFileDefinition: {
-    parser: Parser<unknown>;
+export declare function cramFileDefinition(): {
+    parser: (buffer: Buffer, _startOffset?: number) => {
+        value: {
+            magic: string;
+            majorVersion: number;
+            minorVersion: number;
+            fileId: string;
+        };
+        offset: number;
+    };
+    maxLength: number;
+};
+export declare function cramBlockHeader(): {
+    parser: (buffer: Buffer, _startOffset?: number) => {
+        offset: number;
+        value: {
+            uncompressedSize: number;
+            compressedSize: number;
+            contentId: number;
+            contentType: "FILE_HEADER" | "COMPRESSION_HEADER" | "MAPPED_SLICE_HEADER" | "UNMAPPED_SLICE_HEADER" | "EXTERNAL_DATA" | "CORE_DATA";
+            compressionMethod: CompressionMethod;
+        };
+    };
+    maxLength: number;
+};
+export declare function cramBlockCrc32(): {
+    parser: (buffer: Buffer, offset: number) => {
+        offset: number;
+        value: {
+            crc32: number;
+        };
+    };
     maxLength: number;
 };
 export type CramTagDictionary = string[][];
+export declare function cramTagDictionary(): {
+    parser: (buffer: Buffer, offset: number) => {
+        value: {
+            size: number;
+            ents: string[][];
+        };
+        offset: number;
+    };
+};
 export interface CramPreservationMap {
     MI: boolean;
     UI: boolean;
@@ -19,6 +55,25 @@ export interface CramPreservationMap {
     SM: [number, number, number, number, number];
     TD: CramTagDictionary;
 }
+export declare function cramPreservationMap(): {
+    parser: (buffer: Buffer, offset: number) => {
+        value: {
+            mapSize: number;
+            mapCount: number;
+            ents: ({
+                key: string;
+                value: boolean;
+            } | {
+                key: string;
+                value: number[];
+            } | {
+                key: string;
+                value: string[][];
+            })[];
+        };
+        offset: number;
+    };
+};
 export interface MappedSliceHeader {
     refSeqId: number;
     refSeqStart: number;
@@ -29,7 +84,7 @@ export interface MappedSliceHeader {
     numContentIds: number;
     contentIds: number[];
     refBaseBlockId: number;
-    md5: TupleOf<number, 16>;
+    md5?: TupleOf<number, 16>;
 }
 export interface UnmappedSliceHeader {
     numRecords: number;
@@ -37,9 +92,14 @@ export interface UnmappedSliceHeader {
     numBlocks: number;
     numContentIds: number;
     contentIds: number[];
-    md5: TupleOf<number, 16>;
+    md5?: TupleOf<number, 16>;
+}
+export declare function isMappedSliceHeader(header: unknown): header is MappedSliceHeader;
+interface Value {
+    codecId: number;
+    parametersBytes: number;
+    parameters: Record<string, unknown>;
 }
-export declare function isMappedSliceHeader(header: MappedSliceHeader | UnmappedSliceHeader): header is MappedSliceHeader;
 export type CompressionMethod = 'raw' | 'gzip' | 'bzip2' | 'lzma' | 'rans' | 'rans4x16' | 'arith' | 'fqzcomp' | 'tok3';
 export interface BlockHeader {
     compressionMethod: CompressionMethod;
@@ -48,63 +108,149 @@ export interface BlockHeader {
     compressedSize: number;
     uncompressedSize: number;
 }
-export type CramCompressionHeader = ParsedItem<{
+export interface CramCompressionHeader {
     preservation: CramPreservationMap;
     dataSeriesEncoding: DataSeriesEncodingMap;
     tagEncoding: Record<string, CramEncoding>;
-}>;
-declare function getSectionParsers(majorVersion: number): {
+    _size: number;
+    _endPosition: number;
+}
+export declare function getSectionParsers(majorVersion: number): {
     cramFileDefinition: {
-        parser: Parser<{
-            magic: string;
-            majorVersion: number;
-            minorVersion: number;
-            fileId: string;
-        }>;
+        parser: (buffer: Buffer, _startOffset?: number) => {
+            value: {
+                magic: string;
+                majorVersion: number;
+                minorVersion: number;
+                fileId: string;
+            };
+            offset: number;
+        };
         maxLength: number;
     };
-    cramContainerHeader1: {
-        parser: Parser<{
-            length: number;
-            refSeqId: number;
-            refSeqStart: number;
-            alignmentSpan: number;
-            numRecords: number;
-            recordCounter: number;
-            numBases: number;
-            numBlocks: number;
-            numLandmarks: number;
-        }>;
-        maxLength: number;
-    };
-    cramContainerHeader2: {
-        parser: Parser<{
-            numLandmarks: number;
-            landmarks: number[];
-            crc32: number;
-        }>;
-        maxLength: (x: number) => number;
-    };
     cramBlockHeader: {
-        parser: Parser<BlockHeader>;
+        parser: (buffer: Buffer, _startOffset?: number) => {
+            offset: number;
+            value: {
+                uncompressedSize: number;
+                compressedSize: number;
+                contentId: number;
+                contentType: "FILE_HEADER" | "COMPRESSION_HEADER" | "MAPPED_SLICE_HEADER" | "UNMAPPED_SLICE_HEADER" | "EXTERNAL_DATA" | "CORE_DATA";
+                compressionMethod: CompressionMethod;
+            };
+        };
         maxLength: number;
     };
     cramBlockCrc32: {
-        parser: Parser<{
-            crc32: number;
-        }>;
+        parser: (buffer: Buffer, offset: number) => {
+            offset: number;
+            value: {
+                crc32: number;
+            };
+        };
         maxLength: number;
     };
+    cramDataSeriesEncodingMap: {
+        parser: (buffer: Buffer, offset: number) => {
+            value: {
+                mapSize: number;
+                ents: {
+                    key: string;
+                    value: Value;
+                }[];
+                mapCount: number;
+            };
+            offset: number;
+        };
+    };
+    cramTagEncodingMap: {
+        parser: (buffer: Buffer, offset: number) => {
+            value: {
+                mapSize: number;
+                ents: {
+                    key: string;
+                    value: Value;
+                }[];
+                mapCount: number;
+            };
+            offset: number;
+        };
+    };
     cramCompressionHeader: {
-        parser: Parser<CramCompressionHeader>;
+        parser: (buffer: Buffer, offset: number) => {
+            value: {
+                dataSeriesEncoding: DataSeriesEncodingMap;
+                preservation: CramPreservationMap;
+                tagEncoding: Record<string, CramEncoding>;
+            };
+            offset: number;
+        };
     };
-    cramMappedSliceHeader: {
-        parser: Parser<MappedSliceHeader>;
-        maxLength: (numContentIds: number) => number;
+    cramEncoding: {
+        parser: (buffer: Buffer, offset: number) => {
+            value: Value;
+            offset: number;
+        };
     };
     cramUnmappedSliceHeader: {
-        parser: Parser<UnmappedSliceHeader>;
+        parser: (buffer: Buffer, offset: number) => {
+            value: {
+                recordCounter: number;
+                md5: [number, number, number, number, number, number, number, number, number, number, number, number, number, number, number, number] | undefined;
+                contentIds: number[];
+                numContentIds: number;
+                numBlocks: number;
+                numRecords: number;
+            };
+            offset: number;
+        };
+        maxLength: (numContentIds: number) => number;
+    };
+    cramMappedSliceHeader: {
+        parser: (buffer: Buffer, offset: number) => {
+            value: {
+                md5: [number, number, number, number, number, number, number, number, number, number, number, number, number, number, number, number] | undefined;
+                numBlocks: number;
+                numRecords: number;
+                numContentIds: number;
+                refSeqSpan: number;
+                refSeqId: number;
+                refSeqStart: number;
+                recordCounter: number;
+                refBaseBlockId: number;
+                contentIds: number[];
+            };
+            offset: number;
+        };
         maxLength: (numContentIds: number) => number;
     };
+    cramContainerHeader1: {
+        maxLength: number;
+        parser: (buffer: Buffer, offset: number) => {
+            value: {
+                length: number;
+                refSeqId: number;
+                refSeqStart: number;
+                alignmentSpan: number;
+                numBlocks: number;
+                numLandmarks: number;
+                numBases: number | undefined;
+                recordCounter: number;
+                numRecords: number;
+            };
+            offset: number;
+        };
+    };
+    cramContainerHeader2: {
+        parser: (buffer: Buffer, offset: number) => {
+            value: {
+                numLandmarks: number;
+                landmarks: number[];
+                crc32?: number | undefined;
+            };
+            offset: number;
+        };
+        maxLength: (numLandmarks: number) => number;
+    };
 };
-export { cramFileDefinition, getSectionParsers };
+export {};