@gmod/cram 2.0.3 → 3.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +10 -0
- package/README.md +0 -4
- package/dist/craiIndex.js +1 -1
- package/dist/craiIndex.js.map +1 -1
- package/dist/cram-bundle.js +1 -1
- package/dist/cram-bundle.js.LICENSE.txt +0 -2
- package/dist/cramFile/codecs/byteArrayLength.js +1 -1
- package/dist/cramFile/codecs/byteArrayLength.js.map +1 -1
- package/dist/cramFile/codecs/byteArrayStop.d.ts +0 -1
- package/dist/cramFile/codecs/external.js +1 -1
- package/dist/cramFile/codecs/external.js.map +1 -1
- package/dist/cramFile/codecs/getBits.d.ts +0 -1
- package/dist/cramFile/codecs/getBits.js +2 -2
- package/dist/cramFile/codecs/getBits.js.map +1 -1
- package/dist/cramFile/codecs/huffman.js +2 -1
- package/dist/cramFile/codecs/huffman.js.map +1 -1
- package/dist/cramFile/codecs/index.js +1 -2
- package/dist/cramFile/codecs/index.js.map +1 -1
- package/dist/cramFile/container/compressionScheme.d.ts +0 -3
- package/dist/cramFile/container/compressionScheme.js +0 -4
- package/dist/cramFile/container/compressionScheme.js.map +1 -1
- package/dist/cramFile/container/index.d.ts +57 -5
- package/dist/cramFile/container/index.js +15 -9
- package/dist/cramFile/container/index.js.map +1 -1
- package/dist/cramFile/file.d.ts +24 -61
- package/dist/cramFile/file.js +23 -28
- package/dist/cramFile/file.js.map +1 -1
- package/dist/cramFile/record.d.ts +1 -1
- package/dist/cramFile/sectionParsers.d.ts +195 -49
- package/dist/cramFile/sectionParsers.js +622 -304
- package/dist/cramFile/sectionParsers.js.map +1 -1
- package/dist/cramFile/slice/decodeRecord.js +1 -1
- package/dist/cramFile/slice/decodeRecord.js.map +1 -1
- package/dist/cramFile/slice/index.d.ts +23 -1
- package/dist/cramFile/slice/index.js +9 -6
- package/dist/cramFile/slice/index.js.map +1 -1
- package/dist/cramFile/util.d.ts +6 -6
- package/dist/cramFile/util.js +93 -12
- package/dist/cramFile/util.js.map +1 -1
- package/dist/indexedCramFile.d.ts +0 -3
- package/dist/indexedCramFile.js +4 -16
- package/dist/indexedCramFile.js.map +1 -1
- package/dist/io/index.d.ts +1 -3
- package/dist/io/index.js +3 -16
- package/dist/io/index.js.map +1 -1
- package/dist/rans/d04.js +1 -1
- package/dist/rans/d04.js.map +1 -1
- package/dist/rans/d14.js +1 -1
- package/dist/rans/d14.js.map +1 -1
- package/dist/rans/frequencies.js +2 -3
- package/dist/rans/frequencies.js.map +1 -1
- package/dist/rans/index.js +1 -1
- package/dist/rans/index.js.map +1 -1
- package/dist/sam.js +1 -2
- package/dist/sam.js.map +1 -1
- package/dist/typescript.d.ts +0 -1
- package/dist/typescript.js +0 -8
- package/dist/typescript.js.map +1 -1
- package/dist/unzip-pako.d.ts +0 -1
- package/dist/unzip-pako.js +1 -2
- package/dist/unzip-pako.js.map +1 -1
- package/dist/unzip.d.ts +0 -1
- package/esm/craiIndex.js +1 -1
- package/esm/craiIndex.js.map +1 -1
- package/esm/cramFile/codecs/byteArrayLength.js +1 -1
- package/esm/cramFile/codecs/byteArrayLength.js.map +1 -1
- package/esm/cramFile/codecs/byteArrayStop.d.ts +0 -1
- package/esm/cramFile/codecs/external.js +1 -1
- package/esm/cramFile/codecs/external.js.map +1 -1
- package/esm/cramFile/codecs/getBits.d.ts +0 -1
- package/esm/cramFile/codecs/huffman.js +2 -1
- package/esm/cramFile/codecs/huffman.js.map +1 -1
- package/esm/cramFile/container/compressionScheme.d.ts +0 -3
- package/esm/cramFile/container/compressionScheme.js +0 -4
- package/esm/cramFile/container/compressionScheme.js.map +1 -1
- package/esm/cramFile/container/index.d.ts +57 -5
- package/esm/cramFile/container/index.js +15 -9
- package/esm/cramFile/container/index.js.map +1 -1
- package/esm/cramFile/file.d.ts +24 -61
- package/esm/cramFile/file.js +22 -25
- package/esm/cramFile/file.js.map +1 -1
- package/esm/cramFile/record.d.ts +1 -1
- package/esm/cramFile/sectionParsers.d.ts +195 -49
- package/esm/cramFile/sectionParsers.js +620 -303
- package/esm/cramFile/sectionParsers.js.map +1 -1
- package/esm/cramFile/slice/index.d.ts +23 -1
- package/esm/cramFile/slice/index.js +10 -7
- package/esm/cramFile/slice/index.js.map +1 -1
- package/esm/cramFile/util.d.ts +6 -6
- package/esm/cramFile/util.js +87 -6
- package/esm/cramFile/util.js.map +1 -1
- package/esm/indexedCramFile.d.ts +0 -3
- package/esm/indexedCramFile.js +3 -15
- package/esm/indexedCramFile.js.map +1 -1
- package/esm/io/index.d.ts +1 -3
- package/esm/io/index.js +2 -11
- package/esm/io/index.js.map +1 -1
- package/esm/typescript.d.ts +0 -1
- package/esm/typescript.js +1 -6
- package/esm/typescript.js.map +1 -1
- package/esm/unzip-pako.d.ts +0 -1
- package/esm/unzip.d.ts +0 -1
- package/package.json +9 -15
- package/src/craiIndex.ts +1 -1
- package/src/cramFile/codecs/byteArrayLength.ts +1 -2
- package/src/cramFile/codecs/external.ts +1 -1
- package/src/cramFile/codecs/huffman.ts +2 -1
- package/src/cramFile/container/compressionScheme.ts +1 -8
- package/src/cramFile/container/index.ts +21 -10
- package/src/cramFile/file.ts +28 -43
- package/src/cramFile/record.ts +1 -1
- package/src/cramFile/sectionParsers.ts +668 -390
- package/src/cramFile/slice/index.ts +11 -5
- package/src/cramFile/util.ts +90 -91
- package/src/indexedCramFile.ts +3 -25
- package/src/io/index.ts +2 -12
- package/src/typescript.ts +0 -7
- package/src/typings/binary-parser.d.ts +0 -44
package/dist/io/index.js
CHANGED
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"use strict";
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var __importDefault = (this && this.__importDefault) || function (mod) {
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return (mod && mod.__esModule) ? mod : { "default": mod };
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};
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.RemoteFile = exports.LocalFile =
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const typescript_1 = require("../typescript");
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exports.RemoteFile = exports.LocalFile = void 0;
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exports.open = open;
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const generic_filehandle_1 = require("generic-filehandle");
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function fromUrl(source) {
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const { protocol, pathname } = url_1.default.parse(source);
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if (protocol === 'file:') {
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return new generic_filehandle_1.LocalFile(unescape((0, typescript_1.ensureNotNullish)(pathname)));
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}
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return new generic_filehandle_1.RemoteFile(source);
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}
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exports.fromUrl = fromUrl;
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function open(maybeUrl, maybePath, maybeFilehandle) {
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if (maybeFilehandle) {
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return maybeFilehandle;
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}
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if (maybeUrl) {
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return
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return new generic_filehandle_1.RemoteFile(maybeUrl);
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}
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if (maybePath) {
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return new generic_filehandle_1.LocalFile(maybePath);
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}
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throw new Error('no url, path, or filehandle provided, cannot open');
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}
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exports.open = open;
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var generic_filehandle_2 = require("generic-filehandle");
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Object.defineProperty(exports, "LocalFile", { enumerable: true, get: function () { return generic_filehandle_2.LocalFile; } });
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Object.defineProperty(exports, "RemoteFile", { enumerable: true, get: function () { return generic_filehandle_2.RemoteFile; } });
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package/dist/io/index.js.map
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{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/io/index.ts"],"names":[],"mappings":"
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{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/io/index.ts"],"names":[],"mappings":";;;AAoBS,oBAAI;AAnBb,2DAA0D;AAE1D,SAAS,IAAI,CACX,QAAiB,EACjB,SAAkB,EAClB,eAA4B;IAE5B,IAAI,eAAe,EAAE,CAAC;QACpB,OAAO,eAAe,CAAA;IACxB,CAAC;IACD,IAAI,QAAQ,EAAE,CAAC;QACb,OAAO,IAAI,+BAAU,CAAC,QAAQ,CAAC,CAAA;IACjC,CAAC;IACD,IAAI,SAAS,EAAE,CAAC;QACd,OAAO,IAAI,8BAAS,CAAC,SAAS,CAAC,CAAA;IACjC,CAAC;IACD,MAAM,IAAI,KAAK,CAAC,mDAAmD,CAAC,CAAA;AACtE,CAAC;AAID,yDAA0D;AAAjD,+GAAA,SAAS,OAAA;AAAE,gHAAA,UAAU,OAAA"}
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package/dist/rans/d04.js
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return (mod && mod.__esModule) ? mod : { "default": mod };
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};
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exports.default = uncompress;
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//@ts-nocheck
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const errors_1 = require("../errors");
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const constants_1 = require("./constants");
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}
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out.setPosition(0);
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}
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exports.default = uncompress;
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//# sourceMappingURL=d04.js.map
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package/dist/rans/d04.js.map
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{"version":3,"file":"d04.js","sourceRoot":"","sources":["../../src/rans/d04.ts"],"names":[],"mappings":";;;;;
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{"version":3,"file":"d04.js","sourceRoot":"","sources":["../../src/rans/d04.ts"],"names":[],"mappings":";;;;;AAMA,6BA6EC;AAnFD,aAAa;AACb,sCAA8C;AAE9C,2CAAsC;AACtC,0DAAiC;AAEjC,SAAwB,UAAU;AAChC,gBAAgB,CAAC,KAAK;AACtB,yBAAyB,CAAC,CAAC;AAC3B,uBAAuB,CAAC,IAAI;AAC5B,gBAAgB,CAAC,GAAG;IAEpB,IAAI,KAAK,GAAG,KAAK,CAAC,MAAM,EAAE,CAAA;IAC1B,IAAI,KAAK,GAAG,KAAK,CAAC,MAAM,EAAE,CAAA;IAC1B,IAAI,KAAK,GAAG,KAAK,CAAC,MAAM,EAAE,CAAA;IAC1B,IAAI,KAAK,GAAG,KAAK,CAAC,MAAM,EAAE,CAAA;IAE1B,MAAM,SAAS,CAAC,UAAU,GAAG,GAAG,CAAC,SAAS,EAAE,CAAA;IAC5C,MAAM,SAAS,CAAC,SAAS,GAAG,UAAU,GAAG,CAAC,CAAC,CAAA;IAC3C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,SAAS,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;QACtC,MAAM,UAAU,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,kBAAQ,CAAC,GAAG,CAAC,KAAK,EAAE,oBAAQ,CAAC,CAAC,CAAA;QACxD,MAAM,UAAU,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,kBAAQ,CAAC,GAAG,CAAC,KAAK,EAAE,oBAAQ,CAAC,CAAC,CAAA;QACxD,MAAM,UAAU,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,kBAAQ,CAAC,GAAG,CAAC,KAAK,EAAE,oBAAQ,CAAC,CAAC,CAAA;QACxD,MAAM,UAAU,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,kBAAQ,CAAC,GAAG,CAAC,KAAK,EAAE,oBAAQ,CAAC,CAAC,CAAA;QAExD,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,CAAA;QAChB,GAAG,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAA;QACpB,GAAG,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAA;QACpB,GAAG,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAA;QAEpB,KAAK,GAAG,kBAAQ,CAAC,iBAAiB,CAAC,KAAK,EAAE,IAAI,CAAC,IAAI,GAAG,EAAE,CAAC,EAAE,oBAAQ,CAAC,CAAA;QACpE,KAAK,GAAG,kBAAQ,CAAC,iBAAiB,CAAC,KAAK,EAAE,IAAI,CAAC,IAAI,GAAG,EAAE,CAAC,EAAE,oBAAQ,CAAC,CAAA;QACpE,KAAK,GAAG,kBAAQ,CAAC,iBAAiB,CAAC,KAAK,EAAE,IAAI,CAAC,IAAI,GAAG,EAAE,CAAC,EAAE,oBAAQ,CAAC,CAAA;QACpE,KAAK,GAAG,kBAAQ,CAAC,iBAAiB,CAAC,KAAK,EAAE,IAAI,CAAC,IAAI,GAAG,EAAE,CAAC,EAAE,oBAAQ,CAAC,CAAA;QAEpE,KAAK,GAAG,kBAAQ,CAAC,WAAW,CAAC,KAAK,EAAE,KAAK,CAAC,CAAA;QAC1C,KAAK,GAAG,kBAAQ,CAAC,WAAW,CAAC,KAAK,EAAE,KAAK,CAAC,CAAA;QAC1C,KAAK,GAAG,kBAAQ,CAAC,WAAW,CAAC,KAAK,EAAE,KAAK,CAAC,CAAA;QAC1C,KAAK,GAAG,kBAAQ,CAAC,WAAW,CAAC,KAAK,EAAE,KAAK,CAAC,CAAA;IAC5C,CAAC;IAED,GAAG,CAAC,WAAW,CAAC,SAAS,CAAC,CAAA;IAC1B,IAAI,UAAU,CAAC,CAAC,CAAA;IAChB,QAAQ,UAAU,GAAG,CAAC,EAAE,CAAC;QACvB,KAAK,CAAC;YACJ,MAAK;QACP,KAAK,CAAC;YACJ,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,kBAAQ,CAAC,GAAG,CAAC,KAAK,EAAE,oBAAQ,CAAC,CAAC,CAAA;YACtC,kBAAQ,CAAC,aAAa,CAAC,KAAK,EAAE,KAAK,EAAE,IAAI,CAAC,IAAI,GAAG,CAAC,CAAC,EAAE,oBAAQ,CAAC,CAAA;YAC9D,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,CAAA;YACV,MAAK;QAEP,KAAK,CAAC;YACJ,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,kBAAQ,CAAC,GAAG,CAAC,KAAK,EAAE,oBAAQ,CAAC,CAAC,CAAA;YACtC,kBAAQ,CAAC,aAAa,CAAC,KAAK,EAAE,KAAK,EAAE,IAAI,CAAC,IAAI,GAAG,CAAC,CAAC,EAAE,oBAAQ,CAAC,CAAA;YAC9D,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,CAAA;YAEV,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,kBAAQ,CAAC,GAAG,CAAC,KAAK,EAAE,oBAAQ,CAAC,CAAC,CAAA;YACtC,kBAAQ,CAAC,aAAa,CAAC,KAAK,EAAE,KAAK,EAAE,IAAI,CAAC,IAAI,GAAG,CAAC,CAAC,EAAE,oBAAQ,CAAC,CAAA;YAC9D,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,CAAA;YACV,MAAK;QAEP,KAAK,CAAC;YACJ,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,kBAAQ,CAAC,GAAG,CAAC,KAAK,EAAE,oBAAQ,CAAC,CAAC,CAAA;YACtC,kBAAQ,CAAC,aAAa,CAAC,KAAK,EAAE,KAAK,EAAE,IAAI,CAAC,IAAI,GAAG,CAAC,CAAC,EAAE,oBAAQ,CAAC,CAAA;YAC9D,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,CAAA;YAEV,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,kBAAQ,CAAC,GAAG,CAAC,KAAK,EAAE,oBAAQ,CAAC,CAAC,CAAA;YACtC,kBAAQ,CAAC,aAAa,CAAC,KAAK,EAAE,KAAK,EAAE,IAAI,CAAC,IAAI,GAAG,CAAC,CAAC,EAAE,oBAAQ,CAAC,CAAA;YAC9D,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,CAAA;YAEV,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,kBAAQ,CAAC,GAAG,CAAC,KAAK,EAAE,oBAAQ,CAAC,CAAC,CAAA;YACtC,kBAAQ,CAAC,aAAa,CAAC,KAAK,EAAE,KAAK,EAAE,IAAI,CAAC,IAAI,GAAG,CAAC,CAAC,EAAE,oBAAQ,CAAC,CAAA;YAC9D,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,CAAA;YACV,MAAK;QAEP;YACE,MAAM,IAAI,2BAAkB,CAC1B,sDAAsD,CACvD,CAAA;IACL,CAAC;IAED,GAAG,CAAC,WAAW,CAAC,CAAC,CAAC,CAAA;AACpB,CAAC"}
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package/dist/rans/d14.js
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{"version":3,"file":"d14.js","sourceRoot":"","sources":["../../src/rans/d14.ts"],"names":[],"mappings":";;;;;
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{"version":3,"file":"d14.js","sourceRoot":"","sources":["../../src/rans/d14.ts"],"names":[],"mappings":";;;;;AAIA,6BAuDC;AA3DD,aAAa;AACb,2CAAsC;AACtC,0DAAiC;AAEjC,SAAwB,UAAU;AAChC,gBAAgB,CAAC,KAAK;AACtB,gBAAgB,CAAC,MAAM;AACvB,2BAA2B,CAAC,CAAC;AAC7B,yBAAyB,CAAC,IAAI;IAE9B,MAAM,SAAS,CAAC,UAAU,GAAG,MAAM,CAAC,SAAS,EAAE,CAAA;IAC/C,IAAI,KAAK,GAAG,KAAK,CAAC,MAAM,EAAE,CAAA;IAC1B,IAAI,KAAK,GAAG,KAAK,CAAC,MAAM,EAAE,CAAA;IAC1B,IAAI,KAAK,GAAG,KAAK,CAAC,MAAM,EAAE,CAAA;IAC1B,IAAI,KAAK,GAAG,KAAK,CAAC,MAAM,EAAE,CAAA;IAE1B,MAAM,SAAS,CAAC,IAAI,GAAG,UAAU,IAAI,CAAC,CAAA;IACtC,IAAI,SAAS,CAAC,EAAE,GAAG,CAAC,CAAA;IACpB,IAAI,SAAS,CAAC,EAAE,GAAG,IAAI,CAAA;IACvB,IAAI,SAAS,CAAC,EAAE,GAAG,CAAC,GAAG,IAAI,CAAA;IAC3B,IAAI,SAAS,CAAC,EAAE,GAAG,CAAC,GAAG,IAAI,CAAA;IAC3B,IAAI,SAAS,CAAC,EAAE,GAAG,CAAC,CAAA;IACpB,IAAI,SAAS,CAAC,EAAE,GAAG,CAAC,CAAA;IACpB,IAAI,SAAS,CAAC,EAAE,GAAG,CAAC,CAAA;IACpB,IAAI,SAAS,CAAC,EAAE,GAAG,CAAC,CAAA;IACpB,OAAO,EAAE,GAAG,IAAI,EAAE,EAAE,IAAI,CAAC,EAAE,EAAE,IAAI,CAAC,EAAE,EAAE,IAAI,CAAC,EAAE,EAAE,IAAI,CAAC,EAAE,CAAC;QACrD,MAAM,SAAS,CAAC,EAAE,GAAG,IAAI,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,kBAAQ,CAAC,GAAG,CAAC,KAAK,EAAE,oBAAQ,CAAC,CAAC,CAAA;QAClE,MAAM,SAAS,CAAC,EAAE,GAAG,IAAI,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,kBAAQ,CAAC,GAAG,CAAC,KAAK,EAAE,oBAAQ,CAAC,CAAC,CAAA;QAClE,MAAM,SAAS,CAAC,EAAE,GAAG,IAAI,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,kBAAQ,CAAC,GAAG,CAAC,KAAK,EAAE,oBAAQ,CAAC,CAAC,CAAA;QAClE,MAAM,SAAS,CAAC,EAAE,GAAG,IAAI,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,kBAAQ,CAAC,GAAG,CAAC,KAAK,EAAE,oBAAQ,CAAC,CAAC,CAAA;QAElE,MAAM,CAAC,KAAK,CAAC,EAAE,EAAE,EAAE,CAAC,CAAA;QACpB,MAAM,CAAC,KAAK,CAAC,EAAE,EAAE,EAAE,CAAC,CAAA;QACpB,MAAM,CAAC,KAAK,CAAC,EAAE,EAAE,EAAE,CAAC,CAAA;QACpB,MAAM,CAAC,KAAK,CAAC,EAAE,EAAE,EAAE,CAAC,CAAA;QAEpB,KAAK,GAAG,kBAAQ,CAAC,iBAAiB,CAAC,KAAK,EAAE,IAAI,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,oBAAQ,CAAC,CAAA;QACjE,KAAK,GAAG,kBAAQ,CAAC,iBAAiB,CAAC,KAAK,EAAE,IAAI,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,oBAAQ,CAAC,CAAA;QACjE,KAAK,GAAG,kBAAQ,CAAC,iBAAiB,CAAC,KAAK,EAAE,IAAI,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,oBAAQ,CAAC,CAAA;QACjE,KAAK,GAAG,kBAAQ,CAAC,iBAAiB,CAAC,KAAK,EAAE,IAAI,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,oBAAQ,CAAC,CAAA;QAEjE,KAAK,GAAG,kBAAQ,CAAC,WAAW,CAAC,KAAK,EAAE,KAAK,CAAC,CAAA;QAC1C,KAAK,GAAG,kBAAQ,CAAC,WAAW,CAAC,KAAK,EAAE,KAAK,CAAC,CAAA;QAC1C,KAAK,GAAG,kBAAQ,CAAC,WAAW,CAAC,KAAK,EAAE,KAAK,CAAC,CAAA;QAC1C,KAAK,GAAG,kBAAQ,CAAC,WAAW,CAAC,KAAK,EAAE,KAAK,CAAC,CAAA;QAE1C,EAAE,GAAG,EAAE,CAAA;QACP,EAAE,GAAG,EAAE,CAAA;QACP,EAAE,GAAG,EAAE,CAAA;QACP,EAAE,GAAG,EAAE,CAAA;IACT,CAAC;IAED,YAAY;IACZ,OAAO,EAAE,GAAG,UAAU,EAAE,EAAE,IAAI,CAAC,EAAE,CAAC;QAChC,MAAM,SAAS,CAAC,EAAE,GAAG,IAAI,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,kBAAQ,CAAC,GAAG,CAAC,KAAK,EAAE,oBAAQ,CAAC,CAAC,CAAA;QAClE,MAAM,CAAC,KAAK,CAAC,EAAE,EAAE,EAAE,CAAC,CAAA;QACpB,KAAK,GAAG,kBAAQ,CAAC,aAAa,CAAC,KAAK,EAAE,KAAK,EAAE,IAAI,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,oBAAQ,CAAC,CAAA;QACpE,EAAE,GAAG,EAAE,CAAA;IACT,CAAC;AACH,CAAC"}
|
package/dist/rans/frequencies.js
CHANGED
|
@@ -3,7 +3,8 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
|
3
3
|
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
4
|
};
|
|
5
5
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
-
exports.
|
|
6
|
+
exports.readStatsO0 = readStatsO0;
|
|
7
|
+
exports.readStatsO1 = readStatsO1;
|
|
7
8
|
//@ts-nocheck
|
|
8
9
|
const errors_1 = require("../errors");
|
|
9
10
|
const constants_1 = require("./constants");
|
|
@@ -52,7 +53,6 @@ function readStatsO0(
|
|
|
52
53
|
} while (j !== 0);
|
|
53
54
|
assert(x < constants_1.TOTFREQ);
|
|
54
55
|
}
|
|
55
|
-
exports.readStatsO0 = readStatsO0;
|
|
56
56
|
function readStatsO1(
|
|
57
57
|
/* ByteBuffer */ cp,
|
|
58
58
|
/* Decoding.AriDecoder[] */ D,
|
|
@@ -115,5 +115,4 @@ function readStatsO1(
|
|
|
115
115
|
}
|
|
116
116
|
} while (i !== 0);
|
|
117
117
|
}
|
|
118
|
-
exports.readStatsO1 = readStatsO1;
|
|
119
118
|
//# sourceMappingURL=frequencies.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"frequencies.js","sourceRoot":"","sources":["../../src/rans/frequencies.ts"],"names":[],"mappings":"
|
|
1
|
+
{"version":3,"file":"frequencies.js","sourceRoot":"","sources":["../../src/rans/frequencies.ts"],"names":[],"mappings":";;;;;AAYA,kCA0CC;AAED,kCAiEC;AAzHD,aAAa;AACb,sCAA8C;AAE9C,2CAAqC;AACrC,0DAAiC;AAEjC,SAAS,MAAM,CAAC,MAAM;IACpB,IAAI,CAAC,MAAM,EAAE,CAAC;QACZ,MAAM,IAAI,2BAAkB,CAAC,kBAAkB,CAAC,CAAA;IAClD,CAAC;AACH,CAAC;AAED,SAAgB,WAAW;AACzB,gBAAgB,CAAC,EAAE;AACnB,yBAAyB,CAAC,OAAO;AACjC,8BAA8B,CAAC,IAAI;IAEnC,2CAA2C;IAC3C,IAAI,GAAG,GAAG,CAAC,CAAA;IACX,IAAI,CAAC,GAAG,CAAC,CAAA;IACT,IAAI,CAAC,GAAG,EAAE,CAAC,GAAG,EAAE,GAAG,IAAI,CAAA;IACvB,GAAG,CAAC;QACF,IAAI,OAAO,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,IAAI,EAAE,CAAC;YAC1B,OAAO,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,IAAI,kBAAQ,CAAC,EAAE,EAAE,CAAA;QACnC,CAAC;QACD,OAAO,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,GAAG,EAAE,GAAG,IAAI,CAAA;QACjC,IAAI,OAAO,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,GAAG,EAAE,CAAC;YAC3B,OAAO,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAA;YACvB,OAAO,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,EAAE,GAAG,IAAI,CAAC,CAAA;QACtE,CAAC;QACD,OAAO,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAA;QAEnB,kBAAQ,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,OAAO,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,OAAO,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;QAE9D,gCAAgC;QAChC,IAAI,CAAC,OAAO,CAAC,CAAC,EAAE,CAAC;YACf,OAAO,CAAC,CAAC,GAAG,IAAI,KAAK,CAAC,mBAAO,CAAC,CAAA;QAChC,CAAC;QACD,OAAO,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,GAAG,OAAO,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;QAEzC,CAAC,IAAI,OAAO,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;QAEpB,IAAI,GAAG,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,GAAG,EAAE,CAAC,SAAS,CAAC,EAAE,CAAC,QAAQ,EAAE,CAAC,CAAC,EAAE,CAAC;YAChE,CAAC,GAAG,EAAE,CAAC,GAAG,EAAE,GAAG,IAAI,CAAA;YACnB,GAAG,GAAG,EAAE,CAAC,GAAG,EAAE,GAAG,IAAI,CAAA;QACvB,CAAC;aAAM,IAAI,GAAG,KAAK,CAAC,EAAE,CAAC;YACrB,GAAG,IAAI,CAAC,CAAA;YACR,CAAC,IAAI,CAAC,CAAA;QACR,CAAC;aAAM,CAAC;YACN,CAAC,GAAG,EAAE,CAAC,GAAG,EAAE,GAAG,IAAI,CAAA;QACrB,CAAC;IACH,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAC;IAEjB,MAAM,CAAC,CAAC,GAAG,mBAAO,CAAC,CAAA;AACrB,CAAC;AAED,SAAgB,WAAW;AACzB,gBAAgB,CAAC,EAAE;AACnB,4BAA4B,CAAC,CAAC;AAC9B,gCAAgC,CAAC,IAAI;IAErC,IAAI,IAAI,GAAG,CAAC,CAAA;IACZ,IAAI,CAAC,GAAG,IAAI,GAAG,EAAE,CAAC,GAAG,EAAE,CAAA;IACvB,GAAG,CAAC;QACF,IAAI,IAAI,GAAG,CAAC,CAAA;QACZ,IAAI,CAAC,GAAG,CAAC,CAAA;QACT,IAAI,CAAC,GAAG,IAAI,GAAG,EAAE,CAAC,GAAG,EAAE,CAAA;QACvB,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI,IAAI,EAAE,CAAC;YACjB,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,kBAAQ,CAAC,UAAU,EAAE,CAAA;QAClC,CAAC;QACD,GAAG,CAAC;YACF,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,IAAI,EAAE,CAAC;gBACvB,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,IAAI,kBAAQ,CAAC,EAAE,EAAE,CAAA;YAChC,CAAC;YACD,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,GAAG,EAAE,CAAC,GAAG,EAAE,CAAA;YAC9B,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,GAAG,EAAE,CAAC;gBACxB,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAA;gBACpB,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,IAAI,GAAG,EAAE,CAAC,GAAG,EAAE,CAAC,CAAA;YAChE,CAAC;YACD,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAA;YAEhB,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,EAAE,CAAC;gBACvB,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,mBAAO,CAAA;YACxB,CAAC;YAED,IAAI,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,IAAI,EAAE,CAAC;gBACvB,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,kBAAQ,CAAC,aAAa,EAAE,CAAA;YAC3C,CAAC;YAED,kBAAQ,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;YAE3D,gCAAgC;YAChC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,IAAI,EAAE,CAAC;gBACnB,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,KAAK,CAAC,mBAAO,CAAC,CAAA;YAC7B,CAAC;YACD,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;YAEnC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;YACjB,MAAM,CAAC,CAAC,IAAI,mBAAO,CAAC,CAAA;YAEpB,IAAI,IAAI,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,GAAG,EAAE,CAAC,SAAS,CAAC,EAAE,CAAC,QAAQ,EAAE,CAAC,CAAC,EAAE,CAAC;gBACjE,CAAC,GAAG,IAAI,GAAG,EAAE,CAAC,GAAG,EAAE,CAAA;gBACnB,IAAI,GAAG,IAAI,GAAG,EAAE,CAAC,GAAG,EAAE,CAAA;YACxB,CAAC;iBAAM,IAAI,IAAI,KAAK,CAAC,EAAE,CAAC;gBACtB,IAAI,IAAI,CAAC,CAAA;gBACT,CAAC,IAAI,CAAC,CAAA;YACR,CAAC;iBAAM,CAAC;gBACN,CAAC,GAAG,IAAI,GAAG,EAAE,CAAC,GAAG,EAAE,CAAA;YACrB,CAAC;QACH,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAC;QAEjB,IAAI,IAAI,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,GAAG,EAAE,CAAC,SAAS,CAAC,EAAE,CAAC,QAAQ,EAAE,CAAC,CAAC,EAAE,CAAC;YACjE,CAAC,GAAG,IAAI,GAAG,EAAE,CAAC,GAAG,EAAE,CAAA;YACnB,IAAI,GAAG,IAAI,GAAG,EAAE,CAAC,GAAG,EAAE,CAAA;QACxB,CAAC;aAAM,IAAI,IAAI,KAAK,CAAC,EAAE,CAAC;YACtB,IAAI,IAAI,CAAC,CAAA;YACT,CAAC,IAAI,CAAC,CAAA;QACR,CAAC;aAAM,CAAC;YACN,CAAC,GAAG,IAAI,GAAG,EAAE,CAAC,GAAG,EAAE,CAAA;QACrB,CAAC;IACH,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAC;AACnB,CAAC"}
|
package/dist/rans/index.js
CHANGED
|
@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
|
3
3
|
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
4
|
};
|
|
5
5
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
+
exports.default = uncompress;
|
|
6
7
|
//@ts-nocheck
|
|
7
8
|
const errors_1 = require("../errors");
|
|
8
9
|
const decoding_1 = __importDefault(require("./decoding"));
|
|
@@ -198,5 +199,4 @@ function uncompress(inputBuffer, outputBuffer, initialInputPosition = 0) {
|
|
|
198
199
|
throw new errors_1.CramMalformedError(`Invalid rANS order: ${order}`);
|
|
199
200
|
}
|
|
200
201
|
}
|
|
201
|
-
exports.default = uncompress;
|
|
202
202
|
//# sourceMappingURL=index.js.map
|
package/dist/rans/index.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/rans/index.ts"],"names":[],"mappings":";;;;;
|
|
1
|
+
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|
package/dist/sam.js
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
exports.parseHeaderText =
|
|
3
|
+
exports.parseHeaderText = parseHeaderText;
|
|
4
4
|
function parseHeaderText(text) {
|
|
5
5
|
const lines = text.split(/\r?\n/);
|
|
6
6
|
const data = [];
|
|
@@ -29,5 +29,4 @@ function parseHeaderText(text) {
|
|
|
29
29
|
}
|
|
30
30
|
return data;
|
|
31
31
|
}
|
|
32
|
-
exports.parseHeaderText = parseHeaderText;
|
|
33
32
|
//# sourceMappingURL=sam.js.map
|
package/dist/sam.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"sam.js","sourceRoot":"","sources":["../src/sam.ts"],"names":[],"mappings":"
|
|
1
|
+
{"version":3,"file":"sam.js","sourceRoot":"","sources":["../src/sam.ts"],"names":[],"mappings":";;AAAA,0CAiCC;AAjCD,SAAgB,eAAe,CAAC,IAAY;IAC1C,MAAM,KAAK,GAAG,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,CAAA;IACjC,MAAM,IAAI,GAMJ,EAAE,CAAA;IACR,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;QACzB,MAAM,CAAC,GAAG,EAAE,GAAG,MAAM,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;QACzC,IAAI,GAAG,EAAE,CAAC;YACR,IAAI,CAAC,IAAI,CAAC;gBACR,GAAG,EAAE,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC;gBACjB,IAAI,EAAE,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE;oBACnB,MAAM,CAAC,GAAG,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,CAAA;oBACxB,OAAO,CAAC,KAAK,CAAC,CAAC;wBACb,CAAC,CAAC;4BACE,GAAG,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC;4BAClB,KAAK,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC;yBACtB;wBACH,CAAC,CAAC,qCAAqC;4BACrC,0CAA0C;4BAC1C,4CAA4C;4BAC5C;gCACE,GAAG,EAAE,CAAC;gCACN,KAAK,EAAE,EAAE;6BACV,CAAA;gBACP,CAAC,CAAC;aACH,CAAC,CAAA;QACJ,CAAC;IACH,CAAC;IACD,OAAO,IAAI,CAAA;AACb,CAAC"}
|
package/dist/typescript.d.ts
CHANGED
|
@@ -1,3 +1,2 @@
|
|
|
1
|
-
export declare function ensureNotNullish<T>(x: T | null | undefined): T;
|
|
2
1
|
export type TupleOf<T, N extends number> = N extends N ? number extends N ? T[] : _TupleOf<T, N, []> : never;
|
|
3
2
|
export type _TupleOf<T, N extends number, R extends unknown[]> = R['length'] extends N ? R : _TupleOf<T, N, [T, ...R]>;
|
package/dist/typescript.js
CHANGED
|
@@ -1,11 +1,3 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
exports.ensureNotNullish = void 0;
|
|
4
|
-
function ensureNotNullish(x) {
|
|
5
|
-
if (x === null || x === undefined) {
|
|
6
|
-
throw new Error('Value must not be nullish.');
|
|
7
|
-
}
|
|
8
|
-
return x;
|
|
9
|
-
}
|
|
10
|
-
exports.ensureNotNullish = ensureNotNullish;
|
|
11
3
|
//# sourceMappingURL=typescript.js.map
|
package/dist/typescript.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"typescript.js","sourceRoot":"","sources":["../src/typescript.ts"],"names":[],"mappings":"
|
|
1
|
+
{"version":3,"file":"typescript.js","sourceRoot":"","sources":["../src/typescript.ts"],"names":[],"mappings":""}
|
package/dist/unzip-pako.d.ts
CHANGED
package/dist/unzip-pako.js
CHANGED
|
@@ -1,9 +1,8 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
exports.unzip =
|
|
3
|
+
exports.unzip = unzip;
|
|
4
4
|
const pako_1 = require("pako");
|
|
5
5
|
function unzip(input) {
|
|
6
6
|
return Buffer.from((0, pako_1.inflate)(input));
|
|
7
7
|
}
|
|
8
|
-
exports.unzip = unzip;
|
|
9
8
|
//# sourceMappingURL=unzip-pako.js.map
|
package/dist/unzip-pako.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"unzip-pako.js","sourceRoot":"","sources":["../src/unzip-pako.ts"],"names":[],"mappings":"
|
|
1
|
+
{"version":3,"file":"unzip-pako.js","sourceRoot":"","sources":["../src/unzip-pako.ts"],"names":[],"mappings":";;AAEA,sBAEC;AAJD,+BAA8B;AAE9B,SAAgB,KAAK,CAAC,KAAa;IACjC,OAAO,MAAM,CAAC,IAAI,CAAC,IAAA,cAAO,EAAC,KAAK,CAAC,CAAC,CAAA;AACpC,CAAC"}
|
package/dist/unzip.d.ts
CHANGED
package/esm/craiIndex.js
CHANGED
package/esm/craiIndex.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"craiIndex.js","sourceRoot":"","sources":["../src/craiIndex.ts"],"names":[],"mappings":"AAAA,OAAO,qBAAqB,MAAM,
|
|
1
|
+
{"version":3,"file":"craiIndex.js","sourceRoot":"","sources":["../src/craiIndex.ts"],"names":[],"mappings":"AAAA,OAAO,qBAAqB,MAAM,+BAA+B,CAAA;AACjE,OAAO,QAAQ,MAAM,WAAW,CAAA;AAChC,OAAO,EAAE,KAAK,EAAE,MAAM,SAAS,CAAA;AAC/B,OAAO,EAAE,IAAI,EAAE,MAAM,MAAM,CAAA;AAC3B,OAAO,EAAE,kBAAkB,EAAE,MAAM,UAAU,CAAA;AAI7C,MAAM,SAAS,GAAG,QAAQ,CAAA,CAAC,QAAQ;AAYnC,SAAS,gBAAgB,CAAC,KAAkB,EAAE,MAAgB;IAC5D,MAAM,CAAC,KAAK,EAAE,KAAK,EAAE,IAAI,EAAE,cAAc,EAAE,UAAU,EAAE,UAAU,CAAC,GAAG,MAAM,CAAA;IAE3E,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,EAAE,CAAC;QAClB,KAAK,CAAC,KAAK,CAAC,GAAG,EAAE,CAAA;IACnB,CAAC;IAED,KAAK,CAAC,KAAK,CAAC,CAAC,IAAI,CAAC;QAChB,KAAK;QACL,IAAI;QACJ,cAAc;QACd,UAAU;QACV,UAAU;KACX,CAAC,CAAA;AACJ,CAAC;AAED,MAAM,CAAC,OAAO,OAAO,SAAS;IAY5B;;;;;;OAMG;IACH,YAAY,IAAoB;QAC9B,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,UAAU,CAAC,CAAA;QAC5D,IAAI,CAAC,WAAW,GAAG,IAAI,qBAAqB,CAAuB;YACjE,KAAK,EAAE,IAAI,QAAQ,CAAC,EAAE,OAAO,EAAE,CAAC,EAAE,CAAC;YACnC,IAAI,EAAE,CAAC,KAAK,EAAE,OAAO,EAAE,EAAE,CAAC,IAAI,CAAC,UAAU,EAAE;SAC5C,CAAC,CAAA;IACJ,CAAC;IAED,UAAU;QACR,MAAM,KAAK,GAAgB,EAAE,CAAA;QAC7B,OAAO,IAAI,CAAC,UAAU;aACnB,QAAQ,EAAE;aACV,IAAI,CAAC,IAAI,CAAC,EAAE;YACX,IAAI,IAAI,CAAC,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI,CAAC,CAAC,CAAC,KAAK,GAAG,EAAE,CAAC;gBACtC,OAAO,KAAK,CAAC,IAAI,CAAC,CAAA;YACpB,CAAC;YACD,OAAO,IAAI,CAAA;QACb,CAAC,CAAC;aACD,IAAI,CAAC,kBAAkB,CAAC,EAAE;YACzB,IACE,kBAAkB,CAAC,MAAM,GAAG,CAAC;gBAC7B,kBAAkB,CAAC,YAAY,CAAC,CAAC,CAAC,KAAK,SAAS,EAChD,CAAC;gBACD,MAAM,IAAI,kBAAkB,CAC1B,+IAA+I,CAChJ,CAAA;YACH,CAAC;YACD,mDAAmD;YACnD,uDAAuD;YACvD,uEAAuE;YACvE,gDAAgD;YAChD,IAAI,aAAa,GAAa,EAAE,CAAA;YAChC,IAAI,aAAa,GAAG,EAAE,CAAA;YACtB,KAAK,MAAM,QAAQ,IAAI,kBAAkB,EAAE,CAAC;gBAC1C,IACE,CAAC,QAAQ,IAAI,EAAE,IAAI,QAAQ,IAAI,EAAE,CAAC,CAAC,SAAS;oBAC5C,CAAC,CAAC,aAAa,IAAI,QAAQ,KAAK,EAAE,CAAC,CAAC,eAAe,EACnD,CAAC;oBACD,aAAa,IAAI,MAAM,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAA;gBAChD,CAAC;qBAAM,IAAI,QAAQ,KAAK,CAAC,CAAC,QAAQ,EAAE,CAAC;oBACnC,aAAa,CAAC,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,aAAa,EAAE,EAAE,CAAC,CAAC,CAAA;oBACtD,aAAa,GAAG,EAAE,CAAA;gBACpB,CAAC;qBAAM,IAAI,QAAQ,KAAK,EAAE,CAAC,QAAQ,EAAE,CAAC;oBACpC,aAAa,CAAC,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,aAAa,EAAE,EAAE,CAAC,CAAC,CAAA;oBACtD,aAAa,GAAG,EAAE,CAAA;oBAClB,gBAAgB,CAAC,KAAK,EAAE,aAAa,CAAC,CAAA;oBACtC,aAAa,GAAG,EAAE,CAAA;gBACpB,CAAC;qBAAM,IAAI,QAAQ,KAAK,EAAE,CAAC,QAAQ,IAAI,QAAQ,KAAK,EAAE,CAAC,WAAW,EAAE,CAAC;oBACnE,oDAAoD;oBACpD,oCAAoC;oBACpC,MAAM,IAAI,kBAAkB,CAAC,0BAA0B,CAAC,CAAA;gBAC1D,CAAC;YACH,CAAC;YAED,8DAA8D;YAC9D,IAAI,aAAa,EAAE,CAAC;gBAClB,aAAa,CAAC,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,aAAa,EAAE,EAAE,CAAC,CAAC,CAAA;YACxD,CAAC;YACD,IAAI,aAAa,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;gBAC/B,gBAAgB,CAAC,KAAK,EAAE,aAAa,CAAC,CAAA;YACxC,CAAC;YAED,6BAA6B;YAC7B,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,KAAK,EAAE,GAAG,CAAC,EAAE,EAAE;gBAC7C,KAAK,CAAC,KAAK,CAAC,GAAG,GAAG,CAAC,IAAI,CACrB,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC,KAAK,IAAI,CAAC,CAAC,IAAI,GAAG,CAAC,CAAC,IAAI,CAC/C,CAAA;YACH,CAAC,CAAC,CAAA;YACF,OAAO,KAAK,CAAA;QACd,CAAC,CAAC,CAAA;IACN,CAAC;IAED,QAAQ,CAAC,OAAiC,EAAE;QAC1C,OAAO,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,OAAO,EAAE,IAAI,EAAE,IAAI,CAAC,MAAM,CAAC,CAAA;IACzD,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,2BAA2B,CAAC,KAAa;QAC7C,OAAO,CAAC,CAAC,CAAC,MAAM,IAAI,CAAC,QAAQ,EAAE,CAAC,CAAC,KAAK,CAAC,CAAA;IACzC,CAAC;IAED;;;;;;;;;;OAUG;IACH,KAAK,CAAC,kBAAkB,CACtB,KAAa,EACb,UAAkB,EAClB,QAAgB;QAEhB,MAAM,UAAU,GAAG,CAAC,MAAM,IAAI,CAAC,QAAQ,EAAE,CAAC,CAAC,KAAK,CAAC,CAAA;QACjD,IAAI,CAAC,UAAU,EAAE,CAAC;YAChB,OAAO,EAAE,CAAA;QACX,CAAC;QAED,MAAM,OAAO,GAAG,CAAC,KAAY,EAAE,EAAE;YAC/B,MAAM,UAAU,GAAG,KAAK,CAAC,KAAK,CAAA;YAC9B,MAAM,QAAQ,GAAG,KAAK,CAAC,KAAK,GAAG,KAAK,CAAC,IAAI,CAAA;YACzC,IAAI,UAAU,GAAG,QAAQ,EAAE,CAAC;gBAC1B,OAAO,CAAC,CAAC,CAAA;YACX,CAAC,CAAC,0BAA0B;YAC5B,IAAI,QAAQ,IAAI,UAAU,EAAE,CAAC;gBAC3B,OAAO,CAAC,CAAA;YACV,CAAC,CAAC,wBAAwB;YAC1B,OAAO,CAAC,CAAA,CAAC,uBAAuB;QAClC,CAAC,CAAA;QACD,MAAM,IAAI,GAAG,EAAa,CAAA;QAC1B,KAAK,MAAM,KAAK,IAAI,UAAU,EAAE,CAAC;YAC/B,IAAI,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,EAAE,CAAC;gBACzB,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;YAClB,CAAC;QACH,CAAC;QACD,OAAO,IAAI,CAAA;IACb,CAAC;CACF"}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"byteArrayLength.js","sourceRoot":"","sources":["../../../src/cramFile/codecs/byteArrayLength.ts"],"names":[],"mappings":"AAAA,OAAO,
|
|
1
|
+
{"version":3,"file":"byteArrayLength.js","sourceRoot":"","sources":["../../../src/cramFile/codecs/byteArrayLength.ts"],"names":[],"mappings":"AAAA,OAAO,SAAsB,MAAM,SAAS,CAAA;AAK5C,OAAO,EAAE,WAAW,EAAE,MAAM,SAAS,CAAA;AAOrC,MAAM,CAAC,OAAO,OAAO,kBAAmB,SAAQ,SAG/C;IAGC,YACE,UAAiD,EACjD,QAAqB,EACrB,gBAAkC;QAElC,KAAK,CAAC,UAAU,EAAE,QAAQ,CAAC,CAAA;QAC3B,IAAI,CAAC,gBAAgB,GAAG,gBAAgB,CAAA;QACxC,IAAI,QAAQ,KAAK,WAAW,EAAE,CAAC;YAC7B,MAAM,IAAI,SAAS,CACjB,8CAA8C,QAAQ,EAAE,CACzD,CAAA;QACH,CAAC;IACH,CAAC;IAED,MAAM,CACJ,KAAgB,EAChB,aAA4B,EAC5B,iBAAgD,EAChD,OAAgB;QAEhB,MAAM,WAAW,GAAG,IAAI,CAAC,eAAe,EAAE,CAAA;QAC1C,MAAM,WAAW,GAAG,WAAW,CAAC,MAAM,CACpC,KAAK,EACL,aAAa,EACb,iBAAiB,EACjB,OAAO,CACR,CAAA;QAED,MAAM,SAAS,GAAG,IAAI,CAAC,aAAa,EAAE,CAAA;QACtC,MAAM,IAAI,GAAG,IAAI,UAAU,CAAC,WAAW,CAAC,CAAA;QACxC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,WAAW,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;YACxC,IAAI,CAAC,CAAC,CAAC,GAAG,SAAS,CAAC,MAAM,CACxB,KAAK,EACL,aAAa,EACb,iBAAiB,EACjB,OAAO,CACR,CAAA;QACH,CAAC;QAED,OAAO,IAAI,CAAA;IACb,CAAC;IAED,UAAU;IACV,eAAe;QACb,MAAM,cAAc,GAAG,IAAI,CAAC,UAAU,CAAC,eAAe,CAAA;QACtD,OAAO,IAAI,CAAC,gBAAgB,CAAC,cAAc,EAAE,KAAK,CAAC,CAAA;IACrD,CAAC;IAED,UAAU;IACV,aAAa;QACX,MAAM,cAAc,GAAG,IAAI,CAAC,UAAU,CAAC,cAAc,CAAA;QACrD,OAAO,IAAI,CAAC,gBAAgB,CAAC,cAAc,EAAE,MAAM,CAAC,CAAA;IACtD,CAAC;CACF;AAED,+BAA+B;KAC5B,KAAK,CAAC,GAAG,CAAC;KACV,OAAO,CAAC,MAAM,CAAC,EAAE,CAAC,WAAW,CAAC,kBAAkB,EAAE,MAAM,CAAC,CAAC,CAAA"}
|
|
@@ -20,7 +20,7 @@ export default class ExternalCodec extends CramCodec {
|
|
|
20
20
|
const { blockContentId } = this.parameters;
|
|
21
21
|
const contentBlock = blocksByContentId[blockContentId];
|
|
22
22
|
if (!contentBlock) {
|
|
23
|
-
throw new CramMalformedError(`no block found with content ID ${blockContentId}`);
|
|
23
|
+
throw new CramMalformedError(`no block found with content ID ${blockContentId}}`);
|
|
24
24
|
}
|
|
25
25
|
const cursor = cursors.externalBlocks.getCursor(blockContentId);
|
|
26
26
|
return this._decodeData(contentBlock, cursor);
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"external.js","sourceRoot":"","sources":["../../../src/cramFile/codecs/external.ts"],"names":[],"mappings":"AAAA,sDAAsD;AACtD,OAAO,EAAE,kBAAkB,EAAE,sBAAsB,EAAE,MAAM,cAAc,CAAA;AACzE,OAAO,SAA8B,MAAM,SAAS,CAAA;AACpD,OAAO,EAAE,SAAS,EAAE,MAAM,SAAS,CAAA;AAGnC,OAAO,EAAE,sBAAsB,EAAE,MAAM,WAAW,CAAA;AAGlD,MAAM,CAAC,OAAO,OAAO,aAAc,SAAQ,SAG1C;IAMC,YACE,UAA8C,EAC9C,QAAwB;QAExB,KAAK,CAAC,UAAU,EAAE,QAAQ,CAAC,CAAA;QAC3B,IAAI,IAAI,CAAC,QAAQ,KAAK,KAAK,EAAE,CAAC;YAC5B,IAAI,CAAC,WAAW,GAAG,IAAI,CAAC,UAAU,CAAA;QACpC,CAAC;aAAM,IAAI,IAAI,CAAC,QAAQ,KAAK,MAAM,EAAE,CAAC;YACpC,IAAI,CAAC,WAAW,GAAG,IAAI,CAAC,WAAW,CAAA;QACrC,CAAC;aAAM,CAAC;YACN,MAAM,IAAI,sBAAsB,CAC9B,GAAG,IAAI,CAAC,QAAQ,iDAAiD,CAClE,CAAA;QACH,CAAC;IACH,CAAC;IAED,MAAM,CACJ,KAAgB,EAChB,aAA4B,EAC5B,iBAAgD,EAChD,OAAgB;QAEhB,MAAM,EAAE,cAAc,EAAE,GAAG,IAAI,CAAC,UAAU,CAAA;QAC1C,MAAM,YAAY,GAAG,iBAAiB,CAAC,cAAc,CAAC,CAAA;QACtD,IAAI,CAAC,YAAY,EAAE,CAAC;YAClB,MAAM,IAAI,kBAAkB,CAC1B,kCAAkC,cAAc,
|
|
1
|
+
{"version":3,"file":"external.js","sourceRoot":"","sources":["../../../src/cramFile/codecs/external.ts"],"names":[],"mappings":"AAAA,sDAAsD;AACtD,OAAO,EAAE,kBAAkB,EAAE,sBAAsB,EAAE,MAAM,cAAc,CAAA;AACzE,OAAO,SAA8B,MAAM,SAAS,CAAA;AACpD,OAAO,EAAE,SAAS,EAAE,MAAM,SAAS,CAAA;AAGnC,OAAO,EAAE,sBAAsB,EAAE,MAAM,WAAW,CAAA;AAGlD,MAAM,CAAC,OAAO,OAAO,aAAc,SAAQ,SAG1C;IAMC,YACE,UAA8C,EAC9C,QAAwB;QAExB,KAAK,CAAC,UAAU,EAAE,QAAQ,CAAC,CAAA;QAC3B,IAAI,IAAI,CAAC,QAAQ,KAAK,KAAK,EAAE,CAAC;YAC5B,IAAI,CAAC,WAAW,GAAG,IAAI,CAAC,UAAU,CAAA;QACpC,CAAC;aAAM,IAAI,IAAI,CAAC,QAAQ,KAAK,MAAM,EAAE,CAAC;YACpC,IAAI,CAAC,WAAW,GAAG,IAAI,CAAC,WAAW,CAAA;QACrC,CAAC;aAAM,CAAC;YACN,MAAM,IAAI,sBAAsB,CAC9B,GAAG,IAAI,CAAC,QAAQ,iDAAiD,CAClE,CAAA;QACH,CAAC;IACH,CAAC;IAED,MAAM,CACJ,KAAgB,EAChB,aAA4B,EAC5B,iBAAgD,EAChD,OAAgB;QAEhB,MAAM,EAAE,cAAc,EAAE,GAAG,IAAI,CAAC,UAAU,CAAA;QAC1C,MAAM,YAAY,GAAG,iBAAiB,CAAC,cAAc,CAAC,CAAA;QACtD,IAAI,CAAC,YAAY,EAAE,CAAC;YAClB,MAAM,IAAI,kBAAkB,CAC1B,kCAAkC,cAAc,GAAG,CACpD,CAAA;QACH,CAAC;QACD,MAAM,MAAM,GAAG,OAAO,CAAC,cAAc,CAAC,SAAS,CAAC,cAAc,CAAC,CAAA;QAC/D,OAAO,IAAI,CAAC,WAAW,CAAC,YAAY,EAAE,MAAM,CAAC,CAAA;IAC/C,CAAC;IAED,UAAU,CAAC,YAA2B,EAAE,MAAc;QACpD,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,SAAS,CACnC,YAAY,CAAC,OAAO,EACpB,MAAM,CAAC,YAAY,CACpB,CAAA;QACD,MAAM,CAAC,YAAY,GAAG,MAAM,CAAC,YAAY,GAAG,SAAS,CAAA;QACrD,OAAO,MAAM,CAAA;IACf,CAAC;IAED,WAAW,CAAC,YAA2B,EAAE,MAAc;QACrD,IAAI,MAAM,CAAC,YAAY,IAAI,YAAY,CAAC,OAAO,CAAC,MAAM,EAAE,CAAC;YACvD,MAAM,IAAI,sBAAsB,CAC9B,mEAAmE,CACpE,CAAA;QACH,CAAC;QACD,OAAO,YAAY,CAAC,OAAO,CAAC,MAAM,CAAC,YAAY,EAAE,CAAC,CAAA;IACpD,CAAC;CACF"}
|
|
@@ -23,7 +23,8 @@ export default class HuffmanIntCodec extends CramCodec {
|
|
|
23
23
|
this.buildCodeBook();
|
|
24
24
|
this.buildCodes();
|
|
25
25
|
this.buildCaches();
|
|
26
|
-
// if this is a degenerate zero-length huffman code, special-case the
|
|
26
|
+
// if this is a degenerate zero-length huffman code, special-case the
|
|
27
|
+
// decoding
|
|
27
28
|
if (this.sortedCodes[0].bitLength === 0) {
|
|
28
29
|
this._decode = this._decodeZeroLengthCode;
|
|
29
30
|
}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"huffman.js","sourceRoot":"","sources":["../../../src/cramFile/codecs/huffman.ts"],"names":[],"mappings":"AAAA,sDAAsD;AACtD,OAAO,EAAE,kBAAkB,EAAE,MAAM,cAAc,CAAA;AACjD,OAAO,SAA8B,MAAM,SAAS,CAAA;AACpD,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAA;AAMnC,SAAS,eAAe,CAAC,EAAU;IACjC,IAAI,CAAC,GAAG,CAAC,EAAE,GAAG,CAAC,EAAE,IAAI,CAAC,CAAC,CAAC,GAAG,UAAU,CAAA;IACrC,CAAC,GAAG,CAAC,CAAC,GAAG,UAAU,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,UAAU,CAAC,CAAA;IAC9C,OAAO,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,GAAG,UAAU,CAAC,GAAG,UAAU,CAAC,IAAI,EAAE,CAAA;AAC3D,CAAC;AAQD,MAAM,CAAC,OAAO,OAAO,eAAgB,SAAQ,SAG5C;IASC,YACE,UAAyC,EACzC,QAAwB;QAExB,KAAK,CAAC,UAAU,EAAE,QAAQ,CAAC,CAAA;QAZrB,UAAK,GAAyB,EAAE,CAAA;QAChC,aAAQ,GAA6B,EAAE,CAAA;QACvC,gBAAW,GAAW,EAAE,CAAA;QACxB,0BAAqB,GAAa,EAAE,CAAA;QACpC,mBAAc,GAAa,EAAE,CAAA;QAC7B,8BAAyB,GAAa,EAAE,CAAA;QACxC,mBAAc,GAAa,EAAE,CAAA;QAOnC,IAAI,CAAC,CAAC,MAAM,EAAE,KAAK,CAAC,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,CAAC,EAAE,CAAC;YAC7C,MAAM,IAAI,SAAS,CACjB,GAAG,IAAI,CAAC,QAAQ,oDAAoD,CACrE,CAAA;QACH,CAAC;QAED,IAAI,CAAC,aAAa,EAAE,CAAA;QACpB,IAAI,CAAC,UAAU,EAAE,CAAA;QACjB,IAAI,CAAC,WAAW,EAAE,CAAA;QAElB,
|
|
1
|
+
{"version":3,"file":"huffman.js","sourceRoot":"","sources":["../../../src/cramFile/codecs/huffman.ts"],"names":[],"mappings":"AAAA,sDAAsD;AACtD,OAAO,EAAE,kBAAkB,EAAE,MAAM,cAAc,CAAA;AACjD,OAAO,SAA8B,MAAM,SAAS,CAAA;AACpD,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAA;AAMnC,SAAS,eAAe,CAAC,EAAU;IACjC,IAAI,CAAC,GAAG,CAAC,EAAE,GAAG,CAAC,EAAE,IAAI,CAAC,CAAC,CAAC,GAAG,UAAU,CAAA;IACrC,CAAC,GAAG,CAAC,CAAC,GAAG,UAAU,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,UAAU,CAAC,CAAA;IAC9C,OAAO,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,GAAG,UAAU,CAAC,GAAG,UAAU,CAAC,IAAI,EAAE,CAAA;AAC3D,CAAC;AAQD,MAAM,CAAC,OAAO,OAAO,eAAgB,SAAQ,SAG5C;IASC,YACE,UAAyC,EACzC,QAAwB;QAExB,KAAK,CAAC,UAAU,EAAE,QAAQ,CAAC,CAAA;QAZrB,UAAK,GAAyB,EAAE,CAAA;QAChC,aAAQ,GAA6B,EAAE,CAAA;QACvC,gBAAW,GAAW,EAAE,CAAA;QACxB,0BAAqB,GAAa,EAAE,CAAA;QACpC,mBAAc,GAAa,EAAE,CAAA;QAC7B,8BAAyB,GAAa,EAAE,CAAA;QACxC,mBAAc,GAAa,EAAE,CAAA;QAOnC,IAAI,CAAC,CAAC,MAAM,EAAE,KAAK,CAAC,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,CAAC,EAAE,CAAC;YAC7C,MAAM,IAAI,SAAS,CACjB,GAAG,IAAI,CAAC,QAAQ,oDAAoD,CACrE,CAAA;QACH,CAAC;QAED,IAAI,CAAC,aAAa,EAAE,CAAA;QACpB,IAAI,CAAC,UAAU,EAAE,CAAA;QACjB,IAAI,CAAC,WAAW,EAAE,CAAA;QAElB,qEAAqE;QACrE,WAAW;QACX,IAAI,IAAI,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,SAAS,KAAK,CAAC,EAAE,CAAC;YACxC,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,qBAAqB,CAAA;QAC3C,CAAC;IACH,CAAC;IAED,aAAa;QACX,8DAA8D;QAC9D,IAAI,KAAK,GAAG,IAAI,KAAK,CACnB,IAAI,CAAC,UAAU,CAAC,QAAQ,CACzB,CAAA;QACD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,UAAU,CAAC,QAAQ,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;YACrD,KAAK,CAAC,CAAC,CAAC,GAAG;gBACT,MAAM,EAAE,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC,CAAC,CAAC;gBAClC,SAAS,EAAE,IAAI,CAAC,UAAU,CAAC,UAAU,CAAC,CAAC,CAAC;aACzC,CAAA;QACH,CAAC;QACD,gDAAgD;QAChD,KAAK,GAAG,KAAK,CAAC,IAAI,CAChB,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,SAAS,GAAG,CAAC,CAAC,SAAS,IAAI,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC,MAAM,CAC3D,CAAA;QAED,IAAI,CAAC,QAAQ,GAAG,EAAE,CAAA;QAClB,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE;YACnB,IAAI,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,SAAS,CAAC,EAAE,CAAC;gBACnC,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,SAAS,CAAC,GAAG,EAAE,CAAA;YACpC,CAAC;YACD,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,CAAA;QACjD,CAAC,CAAC,CAAA;IACJ,CAAC;IAED,UAAU;QACR,IAAI,CAAC,KAAK,GAAG,EAAE,CAAA,CAAC,8CAA8C;QAC9D,IAAI,UAAU,GAAG,CAAC,CAAA;QAClB,IAAI,SAAS,GAAG,CAAC,CAAC,CAAA;QAClB,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,SAAS,EAAE,OAAO,CAAC,EAAE,EAAE;YAC7D,MAAM,YAAY,GAAG,QAAQ,CAAC,SAAS,EAAE,EAAE,CAAC,CAAA;YAC5C,OAAO,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE;gBACvB,MAAM,IAAI,GAAG;oBACX,SAAS,EAAE,YAAY;oBACvB,KAAK,EAAE,MAAM;oBACb,OAAO,EAAE,CAAC;iBACX,CAAA;gBACD,SAAS,GAAG,SAAS,GAAG,CAAC,CAAA;gBACzB,MAAM,KAAK,GAAG,YAAY,GAAG,UAAU,CAAA,CAAC,cAAc;gBACtD,SAAS,GAAG,SAAS,IAAI,KAAK,CAAA,CAAC,eAAe;gBAC9C,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA,CAAC,2BAA2B;gBACpD,UAAU,GAAG,UAAU,GAAG,KAAK,CAAA,CAAC,6BAA6B;gBAE7D,IAAI,eAAe,CAAC,SAAS,CAAC,GAAG,YAAY,EAAE,CAAC;oBAC9C,MAAM,IAAI,kBAAkB,CAAC,qBAAqB,CAAC,CAAA;gBACrD,CAAC;gBAED,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,GAAG,IAAI,CAAA;YAC3B,CAAC,CAAC,CAAA;QACJ,CAAC,CAAC,CAAA;IACJ,CAAC;IAED,WAAW;QACT,IAAI,CAAC,WAAW,GAAG,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,IAAI,CAC/C,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,SAAS,GAAG,CAAC,CAAC,SAAS,IAAI,CAAC,CAAC,OAAO,GAAG,CAAC,CAAC,OAAO,CAC7D,CAAA;QAED,IAAI,CAAC,qBAAqB,GAAG,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,CAAA;QAC/D,IAAI,CAAC,cAAc,GAAG,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,CAAA;QAC1D,IAAI,CAAC,yBAAyB,GAAG,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,SAAS,CAAC,CAAA;QACvE,MAAM,UAAU,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,cAAc,CAAC,CAAA;QAEnD,IAAI,CAAC,cAAc,GAAG,IAAI,KAAK,CAAC,UAAU,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAA;QACxD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,cAAc,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;YACvD,IAAI,CAAC,cAAc,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,CAAA;QACtD,CAAC;IACH,CAAC;IAED,MAAM,CACJ,KAAgB,EAChB,aAA4B,EAC5B,iBAAgD,EAChD,OAAgB;QAEhB,OAAO,IAAI,CAAC,OAAO,CAAC,KAAK,EAAE,aAAa,EAAE,OAAO,CAAC,SAAS,CAAC,CAAA;IAC9D,CAAC;IAED,kBAAkB;IAClB,cAAc;IACd,IAAI;IAEJ,yCAAyC;IACzC,qBAAqB;QACnB,OAAO,IAAI,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,KAAK,CAAA;IAClC,CAAC;IAED,OAAO,CAAC,KAAgB,EAAE,aAA4B,EAAE,UAAkB;QACxE,MAAM,KAAK,GAAG,aAAa,CAAC,OAAO,CAAA;QAEnC,IAAI,OAAO,GAAG,CAAC,CAAA;QACf,IAAI,IAAI,GAAG,CAAC,CAAA;QACZ,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,WAAW,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;YACpD,MAAM,MAAM,GAAG,IAAI,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;YAC5C,IAAI,KAAK,MAAM,GAAG,OAAO,CAAA;YACzB,IAAI,IAAI,OAAO,CAAC,KAAK,EAAE,UAAU,EAAE,MAAM,GAAG,OAAO,CAAC,CAAA;YACpD,OAAO,GAAG,MAAM,CAAA;YAChB,CAAC;gBACC,MAAM,KAAK,GAAG,IAAI,CAAC,cAAc,CAAC,IAAI,CAAC,CAAA;gBACvC,IAAI,KAAK,GAAG,CAAC,CAAC,IAAI,IAAI,CAAC,yBAAyB,CAAC,KAAK,CAAC,KAAK,MAAM,EAAE,CAAC;oBACnE,OAAO,IAAI,CAAC,qBAAqB,CAAC,KAAK,CAAC,CAAA;gBAC1C,CAAC;gBAED,KACE,IAAI,CAAC,GAAG,CAAC,EACT,IAAI,CAAC,WAAW,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,KAAK,MAAM;oBAC5C,CAAC,GAAG,IAAI,CAAC,WAAW,CAAC,MAAM,EAC3B,CAAC,IAAI,CAAC,EACN,CAAC;oBACD,CAAC,IAAI,CAAC,CAAA;gBACR,CAAC;YACH,CAAC;QACH,CAAC;QACD,MAAM,IAAI,kBAAkB,CAAC,2BAA2B,CAAC,CAAA;IAC3D,CAAC;CACF"}
|
|
@@ -48,9 +48,6 @@ export default class CramContainerCompressionScheme {
|
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|
48
48
|
tagCodecCache: Record<string, CramCodec>;
|
|
49
49
|
tagEncoding: Record<string, CramEncoding>;
|
|
50
50
|
dataSeriesEncoding: DataSeriesEncodingMap;
|
|
51
|
-
private preservation;
|
|
52
|
-
private _endPosition;
|
|
53
|
-
private _size;
|
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54
51
|
constructor(content: CramCompressionHeader);
|
|
55
52
|
/**
|
|
56
53
|
* @param {string} tagName three-character tag name
|
|
@@ -68,7 +68,6 @@ export default class CramContainerCompressionScheme {
|
|
|
68
68
|
this.dataSeriesCodecCache = {};
|
|
69
69
|
this.tagCodecCache = {};
|
|
70
70
|
this.tagEncoding = {};
|
|
71
|
-
// Object.assign(this, content)
|
|
72
71
|
// interpret some of the preservation map tags for convenient use
|
|
73
72
|
this.readNamesIncluded = content.preservation.RN;
|
|
74
73
|
this.APdelta = content.preservation.AP;
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|
@@ -77,9 +76,6 @@ export default class CramContainerCompressionScheme {
|
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|
77
76
|
this.substitutionMatrix = parseSubstitutionMatrix(content.preservation.SM);
|
|
78
77
|
this.dataSeriesEncoding = content.dataSeriesEncoding;
|
|
79
78
|
this.tagEncoding = content.tagEncoding;
|
|
80
|
-
this.preservation = content.preservation;
|
|
81
|
-
this._size = content._size;
|
|
82
|
-
this._endPosition = content._endPosition;
|
|
83
79
|
}
|
|
84
80
|
/**
|
|
85
81
|
* @param {string} tagName three-character tag name
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"compressionScheme.js","sourceRoot":"","sources":["../../../src/cramFile/container/compressionScheme.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,gBAAgB,EAAE,MAAM,WAAW,CAAA;AAI5C,OAAO,EAAE,kBAAkB,EAAE,MAAM,cAAc,CAAA;AAMjD,sDAAsD;AACtD,aAAa;AACb,MAAM,eAAe,GAAG;IACtB,EAAE,EAAE,KAAK;IACT,EAAE,EAAE,KAAK;IACT,EAAE,EAAE,KAAK;IACT,EAAE,EAAE,KAAK;IACT,EAAE,EAAE,KAAK;IACT,EAAE,EAAE,KAAK;IACT,EAAE,EAAE,KAAK;IACT,EAAE,EAAE,KAAK;IACT,EAAE,EAAE,KAAK;IACT,EAAE,EAAE,KAAK;IACT,EAAE,EAAE,KAAK;IACT,EAAE,EAAE,MAAM;IACV,EAAE,EAAE,KAAK;IACT,EAAE,EAAE,KAAK;IACT,EAAE,EAAE,MAAM;IACV,EAAE,EAAE,KAAK;IACT,EAAE,EAAE,MAAM;IACV,EAAE,EAAE,WAAW;IACf,EAAE,EAAE,WAAW;IACf,EAAE,EAAE,KAAK;IACT,EAAE,EAAE,MAAM;IACV,EAAE,EAAE,WAAW;IACf,EAAE,EAAE,KAAK;IACT,EAAE,EAAE,KAAK;IACT,EAAE,EAAE,KAAK;IACT,EAAE,EAAE,KAAK;IACT,EAAE,EAAE,WAAW;IACf,EAAE,EAAE,MAAM;IACV,EAAE,EAAE,WAAW;IACf,EAAE,EAAE,KAAK;IACT,gBAAgB;IAChB,gBAAgB;CACR,CAAA;AAIV,SAAS,uBAAuB,CAAC,SAAmB;IAClD,MAAM,MAAM,GAAe,IAAI,KAAK,CAAC,CAAC,CAAC,CAAA;IACvC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;QAC9B,MAAM,CAAC,CAAC,CAAC,GAAG,IAAI,KAAK,CAAC,CAAC,CAAC,CAAA;IAC1B,CAAC;IAED,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAA;IACxC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAA;IACxC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAA;IACxC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAA;IAExC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAA;IACxC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAA;IACxC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAA;IACxC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAA;IAExC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAA;IACxC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAA;IACxC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAA;IACxC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAA;IAExC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAA;IACxC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAA;IACxC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAA;IACxC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAA;IAExC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAA;IACxC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAA;IACxC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAA;IACxC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAA;IAExC,OAAO,MAAM,CAAA;AACf,CAAC;AAMD,MAAM,CAAC,OAAO,OAAO,8BAA8B;
|
|
1
|
+
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@@ -1,4 +1,3 @@
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1
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-
/// <reference types="node" />
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2
1
|
import CramSlice from '../slice';
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3
2
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import CramContainerCompressionScheme from './compressionScheme';
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3
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import CramFile from '../file';
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@@ -6,9 +5,39 @@ export default class CramContainer {
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file: CramFile;
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6
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filePosition: number;
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constructor(file: CramFile, filePosition: number);
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9
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-
getHeader(): Promise<
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getHeader(): Promise<({
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length: number;
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refSeqId: number;
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refSeqStart: number;
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alignmentSpan: number;
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numBlocks: number;
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numLandmarks: number;
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numBases: number | undefined;
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recordCounter: number;
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numRecords: number;
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} & {
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_endPosition: number;
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_size: number;
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} & {
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numLandmarks: number;
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landmarks: number[];
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crc32?: number | undefined;
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} & {
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_endPosition: number;
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_size: number;
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} & {
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29
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_size: number;
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_endPosition: number;
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+
}) | undefined>;
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10
32
|
getCompressionHeaderBlock(): Promise<{
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11
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-
parsedContent:
|
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33
|
+
parsedContent: {
|
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34
|
+
dataSeriesEncoding: import("../codecs/dataSeriesTypes").DataSeriesEncodingMap;
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35
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+
preservation: import("../sectionParsers").CramPreservationMap;
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36
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+
tagEncoding: Record<string, import("../encoding").CramEncoding>;
|
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37
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+
} & {
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38
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+
_endPosition: number;
|
|
39
|
+
_size: number;
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40
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+
};
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12
41
|
compressionMethod: import("../sectionParsers").CompressionMethod;
|
|
13
42
|
contentType: "FILE_HEADER" | "COMPRESSION_HEADER" | "MAPPED_SLICE_HEADER" | "UNMAPPED_SLICE_HEADER" | "EXTERNAL_DATA" | "CORE_DATA";
|
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14
43
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contentId: number;
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@@ -18,10 +47,33 @@ export default class CramContainer {
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18
47
|
contentPosition: number;
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19
48
|
_size: number;
|
|
20
49
|
content: Buffer;
|
|
21
|
-
crc32?: number
|
|
50
|
+
crc32?: number;
|
|
22
51
|
} | null | undefined>;
|
|
23
52
|
getFirstBlock(): Promise<import("../file").CramFileBlock | undefined>;
|
|
24
53
|
getCompressionScheme(): Promise<CramContainerCompressionScheme | undefined>;
|
|
25
54
|
getSlice(slicePosition: number, sliceSize: number): CramSlice;
|
|
26
|
-
_readContainerHeader(position: number): Promise<
|
|
55
|
+
_readContainerHeader(position: number): Promise<({
|
|
56
|
+
length: number;
|
|
57
|
+
refSeqId: number;
|
|
58
|
+
refSeqStart: number;
|
|
59
|
+
alignmentSpan: number;
|
|
60
|
+
numBlocks: number;
|
|
61
|
+
numLandmarks: number;
|
|
62
|
+
numBases: number | undefined;
|
|
63
|
+
recordCounter: number;
|
|
64
|
+
numRecords: number;
|
|
65
|
+
} & {
|
|
66
|
+
_endPosition: number;
|
|
67
|
+
_size: number;
|
|
68
|
+
} & {
|
|
69
|
+
numLandmarks: number;
|
|
70
|
+
landmarks: number[];
|
|
71
|
+
crc32?: number | undefined;
|
|
72
|
+
} & {
|
|
73
|
+
_endPosition: number;
|
|
74
|
+
_size: number;
|
|
75
|
+
} & {
|
|
76
|
+
_size: number;
|
|
77
|
+
_endPosition: number;
|
|
78
|
+
}) | undefined>;
|
|
27
79
|
}
|
|
@@ -2,23 +2,24 @@ import { CramMalformedError } from '../../errors';
|
|
|
2
2
|
import { itf8Size, parseItem, tinyMemoize } from '../util';
|
|
3
3
|
import CramSlice from '../slice';
|
|
4
4
|
import CramContainerCompressionScheme from './compressionScheme';
|
|
5
|
+
import { getSectionParsers } from '../sectionParsers';
|
|
5
6
|
export default class CramContainer {
|
|
6
7
|
constructor(file, filePosition) {
|
|
7
8
|
this.file = file;
|
|
8
9
|
this.filePosition = filePosition;
|
|
9
10
|
}
|
|
10
|
-
// memoize
|
|
11
11
|
getHeader() {
|
|
12
12
|
return this._readContainerHeader(this.filePosition);
|
|
13
13
|
}
|
|
14
|
-
// memoize
|
|
15
14
|
async getCompressionHeaderBlock() {
|
|
16
15
|
const containerHeader = await this.getHeader();
|
|
17
|
-
// if there are no records in the container, there will be no compression
|
|
18
|
-
|
|
16
|
+
// if there are no records in the container, there will be no compression
|
|
17
|
+
// header
|
|
18
|
+
if (!(containerHeader === null || containerHeader === void 0 ? void 0 : containerHeader.numRecords)) {
|
|
19
19
|
return null;
|
|
20
20
|
}
|
|
21
|
-
const
|
|
21
|
+
const { majorVersion } = await this.file.getDefinition();
|
|
22
|
+
const sectionParsers = getSectionParsers(majorVersion);
|
|
22
23
|
const block = await this.getFirstBlock();
|
|
23
24
|
if (block === undefined) {
|
|
24
25
|
return undefined;
|
|
@@ -34,10 +35,13 @@ export default class CramContainer {
|
|
|
34
35
|
}
|
|
35
36
|
async getFirstBlock() {
|
|
36
37
|
const containerHeader = await this.getHeader();
|
|
38
|
+
if (!containerHeader) {
|
|
39
|
+
return undefined;
|
|
40
|
+
}
|
|
37
41
|
return this.file.readBlock(containerHeader._endPosition);
|
|
38
42
|
}
|
|
39
|
-
// parses the compression header data into a CramContainerCompressionScheme
|
|
40
|
-
//
|
|
43
|
+
// parses the compression header data into a CramContainerCompressionScheme
|
|
44
|
+
// object
|
|
41
45
|
async getCompressionScheme() {
|
|
42
46
|
const header = await this.getCompressionHeaderBlock();
|
|
43
47
|
if (!header) {
|
|
@@ -51,10 +55,12 @@ export default class CramContainer {
|
|
|
51
55
|
return new CramSlice(this, slicePosition, sliceSize);
|
|
52
56
|
}
|
|
53
57
|
async _readContainerHeader(position) {
|
|
54
|
-
const
|
|
58
|
+
const { majorVersion } = await this.file.getDefinition();
|
|
59
|
+
const sectionParsers = getSectionParsers(majorVersion);
|
|
55
60
|
const { cramContainerHeader1, cramContainerHeader2 } = sectionParsers;
|
|
56
61
|
const { size: fileSize } = await this.file.stat();
|
|
57
62
|
if (position >= fileSize) {
|
|
63
|
+
console.warn(`position:${position}>=fileSize:${fileSize} in cram container`);
|
|
58
64
|
return undefined;
|
|
59
65
|
}
|
|
60
66
|
// parse the container header. do it in 2 pieces because you cannot tell
|
|
@@ -64,7 +70,7 @@ export default class CramContainer {
|
|
|
64
70
|
const header1 = parseItem(bytes1, cramContainerHeader1.parser);
|
|
65
71
|
const numLandmarksSize = itf8Size(header1.numLandmarks);
|
|
66
72
|
if (position + header1.length >= fileSize) {
|
|
67
|
-
console.warn(
|
|
73
|
+
console.warn(`container header at ${position} indicates that the container has length ${header1.length}, which extends beyond the length of the file. Skipping this container.`);
|
|
68
74
|
return undefined;
|
|
69
75
|
}
|
|
70
76
|
const bytes2 = Buffer.allocUnsafe(cramContainerHeader2.maxLength(header1.numLandmarks));
|