@genome-spy/core 0.73.0 → 0.75.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (392) hide show
  1. package/dist/bundle/AbortablePromiseCache-3gHJdF3E.js +96 -0
  2. package/dist/bundle/browser-BTgw5ieH.js +126 -0
  3. package/dist/bundle/chunk-DmhlhrBa.js +11 -0
  4. package/dist/bundle/esm-BDFRLEuD.js +1248 -0
  5. package/dist/bundle/esm-BygJiwh0.js +573 -0
  6. package/dist/bundle/esm-CGX-qz1d.js +155 -0
  7. package/dist/bundle/esm-CgfVIRJ-.js +121 -0
  8. package/dist/bundle/esm-CuMSzCHy.js +298 -0
  9. package/dist/bundle/esm-DMXpJXM4.js +369 -0
  10. package/dist/bundle/esm-DQiq2Zhd.js +1426 -0
  11. package/dist/bundle/esm-DtE8VqAv.js +1015 -0
  12. package/dist/bundle/esm-sIoQYZ21.js +461 -0
  13. package/dist/bundle/index.es.js +21266 -25938
  14. package/dist/bundle/index.js +367 -383
  15. package/dist/bundle/parquetRead-DG_-F5j5.js +1609 -0
  16. package/dist/schema.json +13421 -7210
  17. package/dist/src/config/axisConfig.d.ts +16 -0
  18. package/dist/src/config/axisConfig.d.ts.map +1 -0
  19. package/dist/src/config/axisConfig.js +84 -0
  20. package/dist/src/config/defaultConfig.d.ts +3 -0
  21. package/dist/src/config/defaultConfig.d.ts.map +1 -0
  22. package/dist/src/config/defaultConfig.js +38 -0
  23. package/dist/src/config/defaults/axisDefaults.d.ts +5 -0
  24. package/dist/src/config/defaults/axisDefaults.d.ts.map +1 -0
  25. package/dist/src/config/defaults/axisDefaults.js +72 -0
  26. package/dist/src/config/defaults/markDefaults.d.ts +15 -0
  27. package/dist/src/config/defaults/markDefaults.d.ts.map +1 -0
  28. package/dist/src/config/defaults/markDefaults.js +121 -0
  29. package/dist/src/config/defaults/scaleDefaults.d.ts +5 -0
  30. package/dist/src/config/defaults/scaleDefaults.d.ts.map +1 -0
  31. package/dist/src/config/defaults/scaleDefaults.js +18 -0
  32. package/dist/src/config/defaults/titleDefaults.d.ts +5 -0
  33. package/dist/src/config/defaults/titleDefaults.d.ts.map +1 -0
  34. package/dist/src/config/defaults/titleDefaults.js +47 -0
  35. package/dist/src/config/defaults/viewDefaults.d.ts +3 -0
  36. package/dist/src/config/defaults/viewDefaults.d.ts.map +1 -0
  37. package/dist/src/config/defaults/viewDefaults.js +2 -0
  38. package/dist/src/config/markConfig.d.ts +8 -0
  39. package/dist/src/config/markConfig.d.ts.map +1 -0
  40. package/dist/src/config/markConfig.js +27 -0
  41. package/dist/src/config/mergeConfig.d.ts +8 -0
  42. package/dist/src/config/mergeConfig.d.ts.map +1 -0
  43. package/dist/src/config/mergeConfig.js +81 -0
  44. package/dist/src/config/resolveConfig.d.ts +22 -0
  45. package/dist/src/config/resolveConfig.d.ts.map +1 -0
  46. package/dist/src/config/resolveConfig.js +32 -0
  47. package/dist/src/config/scaleConfig.d.ts +40 -0
  48. package/dist/src/config/scaleConfig.d.ts.map +1 -0
  49. package/dist/src/config/scaleConfig.js +220 -0
  50. package/dist/src/config/styleUtils.d.ts +6 -0
  51. package/dist/src/config/styleUtils.d.ts.map +1 -0
  52. package/dist/src/config/styleUtils.js +10 -0
  53. package/dist/src/config/themes.d.ts +15 -0
  54. package/dist/src/config/themes.d.ts.map +1 -0
  55. package/dist/src/config/themes.js +293 -0
  56. package/dist/src/config/titleConfig.d.ts +12 -0
  57. package/dist/src/config/titleConfig.d.ts.map +1 -0
  58. package/dist/src/config/titleConfig.js +42 -0
  59. package/dist/src/config/viewConfig.d.ts +7 -0
  60. package/dist/src/config/viewConfig.d.ts.map +1 -0
  61. package/dist/src/config/viewConfig.js +29 -0
  62. package/dist/src/data/flowNode.d.ts +22 -1
  63. package/dist/src/data/flowNode.d.ts.map +1 -1
  64. package/dist/src/data/flowNode.js +37 -1
  65. package/dist/src/data/formats/bed.d.ts.map +1 -1
  66. package/dist/src/data/formats/bed.js +6 -1
  67. package/dist/src/data/formats/bedpe.d.ts.map +1 -1
  68. package/dist/src/data/formats/bedpe.js +4 -0
  69. package/dist/src/data/formats/fasta.d.ts.map +1 -1
  70. package/dist/src/data/formats/fasta.js +4 -0
  71. package/dist/src/data/formats/parquet.d.ts.map +1 -1
  72. package/dist/src/data/formats/parquet.js +4 -0
  73. package/dist/src/data/sources/dataSourceFactory.d.ts +2 -13
  74. package/dist/src/data/sources/dataSourceFactory.d.ts.map +1 -1
  75. package/dist/src/data/sources/dataSourceFactory.js +5 -141
  76. package/dist/src/data/sources/dataUtils.d.ts +25 -0
  77. package/dist/src/data/sources/dataUtils.d.ts.map +1 -1
  78. package/dist/src/data/sources/dataUtils.js +23 -0
  79. package/dist/src/data/sources/inlineSource.js +2 -2
  80. package/dist/src/data/sources/lazy/axisGenomeSource.d.ts.map +1 -1
  81. package/dist/src/data/sources/lazy/axisGenomeSource.js +11 -0
  82. package/dist/src/data/sources/lazy/axisTickSource.d.ts +1 -1
  83. package/dist/src/data/sources/lazy/axisTickSource.d.ts.map +1 -1
  84. package/dist/src/data/sources/lazy/axisTickSource.js +19 -8
  85. package/dist/src/data/sources/lazy/bamSource.d.ts.map +1 -1
  86. package/dist/src/data/sources/lazy/bamSource.js +11 -0
  87. package/dist/src/data/sources/lazy/bigBedSource.d.ts.map +1 -1
  88. package/dist/src/data/sources/lazy/bigBedSource.js +12 -1
  89. package/dist/src/data/sources/lazy/bigWigSource.d.ts.map +1 -1
  90. package/dist/src/data/sources/lazy/bigWigSource.js +11 -0
  91. package/dist/src/data/sources/lazy/gff3Source.d.ts.map +1 -1
  92. package/dist/src/data/sources/lazy/gff3Source.js +12 -1
  93. package/dist/src/data/sources/lazy/indexedFastaSource.d.ts.map +1 -1
  94. package/dist/src/data/sources/lazy/indexedFastaSource.js +11 -0
  95. package/dist/src/data/sources/lazy/lazyDataSourceRegistry.d.ts +27 -0
  96. package/dist/src/data/sources/lazy/lazyDataSourceRegistry.d.ts.map +1 -0
  97. package/dist/src/data/sources/lazy/lazyDataSourceRegistry.js +65 -0
  98. package/dist/src/data/sources/lazy/registerBuiltInLazySources.d.ts +2 -0
  99. package/dist/src/data/sources/lazy/registerBuiltInLazySources.d.ts.map +1 -0
  100. package/dist/src/data/sources/lazy/registerBuiltInLazySources.js +8 -0
  101. package/dist/src/data/sources/lazy/singleAxisLazySource.d.ts.map +1 -1
  102. package/dist/src/data/sources/lazy/singleAxisLazySource.js +11 -2
  103. package/dist/src/data/sources/lazy/vcfSource.d.ts.map +1 -1
  104. package/dist/src/data/sources/lazy/vcfSource.js +11 -0
  105. package/dist/src/data/sources/urlSource.d.ts.map +1 -1
  106. package/dist/src/data/sources/urlSource.js +13 -5
  107. package/dist/src/data/transforms/aggregate.d.ts +1 -0
  108. package/dist/src/data/transforms/aggregate.d.ts.map +1 -1
  109. package/dist/src/data/transforms/aggregate.js +30 -8
  110. package/dist/src/data/transforms/aggregateOps.d.ts.map +1 -1
  111. package/dist/src/data/transforms/aggregateOps.js +12 -1
  112. package/dist/src/data/transforms/coverage.js +2 -2
  113. package/dist/src/data/transforms/filter.js +1 -1
  114. package/dist/src/data/transforms/filterScoredLabels.d.ts +6 -0
  115. package/dist/src/data/transforms/filterScoredLabels.d.ts.map +1 -1
  116. package/dist/src/data/transforms/filterScoredLabels.js +9 -0
  117. package/dist/src/data/transforms/measureText.d.ts +1 -0
  118. package/dist/src/data/transforms/measureText.d.ts.map +1 -1
  119. package/dist/src/data/transforms/measureText.js +14 -5
  120. package/dist/src/data/transforms/pileup.d.ts.map +1 -1
  121. package/dist/src/data/transforms/pileup.js +1 -2
  122. package/dist/src/data/transforms/regexFold.d.ts.map +1 -1
  123. package/dist/src/data/transforms/regexFold.js +0 -1
  124. package/dist/src/embedFactory.d.ts +13 -0
  125. package/dist/src/embedFactory.d.ts.map +1 -0
  126. package/dist/src/embedFactory.js +127 -0
  127. package/dist/src/encoder/accessor.d.ts +3 -12
  128. package/dist/src/encoder/accessor.d.ts.map +1 -1
  129. package/dist/src/encoder/accessor.js +10 -65
  130. package/dist/src/encoder/encoder.d.ts +51 -8
  131. package/dist/src/encoder/encoder.d.ts.map +1 -1
  132. package/dist/src/encoder/encoder.js +179 -55
  133. package/dist/src/fonts/bmFontManager.js +1 -1
  134. package/dist/src/full.d.ts +2 -0
  135. package/dist/src/full.d.ts.map +1 -0
  136. package/dist/src/full.js +2 -0
  137. package/dist/src/genome/genome.d.ts +8 -0
  138. package/dist/src/genome/genome.d.ts.map +1 -1
  139. package/dist/src/genome/genome.js +16 -2
  140. package/dist/src/genome/genomeStore.js +1 -1
  141. package/dist/src/genome/rootGenomeConfig.d.ts.map +1 -1
  142. package/dist/src/genome/rootGenomeConfig.js +6 -2
  143. package/dist/src/genome/scaleLocus.d.ts.map +1 -1
  144. package/dist/src/genome/scaleLocus.js +31 -7
  145. package/dist/src/genomeSpy/cursorManager.d.ts +69 -0
  146. package/dist/src/genomeSpy/cursorManager.d.ts.map +1 -0
  147. package/dist/src/genomeSpy/cursorManager.js +131 -0
  148. package/dist/src/genomeSpy/headlessBootstrap.d.ts +113 -0
  149. package/dist/src/genomeSpy/headlessBootstrap.d.ts.map +1 -0
  150. package/dist/src/genomeSpy/headlessBootstrap.js +246 -0
  151. package/dist/src/genomeSpy/interactionController.d.ts +5 -0
  152. package/dist/src/genomeSpy/interactionController.d.ts.map +1 -1
  153. package/dist/src/genomeSpy/interactionController.js +292 -59
  154. package/dist/src/genomeSpy/interactionDispatcher.d.ts +50 -0
  155. package/dist/src/genomeSpy/interactionDispatcher.d.ts.map +1 -0
  156. package/dist/src/genomeSpy/interactionDispatcher.js +203 -0
  157. package/dist/src/genomeSpy/viewContextFactory.d.ts +4 -2
  158. package/dist/src/genomeSpy/viewContextFactory.d.ts.map +1 -1
  159. package/dist/src/genomeSpy/viewContextFactory.js +12 -4
  160. package/dist/src/genomeSpy/viewDataInit.d.ts.map +1 -1
  161. package/dist/src/genomeSpy/viewDataInit.js +7 -3
  162. package/dist/src/genomeSpy.d.ts +1 -124
  163. package/dist/src/genomeSpy.d.ts.map +1 -1
  164. package/dist/src/genomeSpy.js +7 -688
  165. package/dist/src/genomeSpyBase.d.ts +133 -0
  166. package/dist/src/genomeSpyBase.d.ts.map +1 -0
  167. package/dist/src/genomeSpyBase.js +719 -0
  168. package/dist/src/gl/arrayBuilder.d.ts.map +1 -1
  169. package/dist/src/gl/arrayBuilder.js +0 -3
  170. package/dist/src/gl/colorUtils.d.ts.map +1 -1
  171. package/dist/src/gl/colorUtils.js +3 -0
  172. package/dist/src/gl/dataToVertices.d.ts +12 -14
  173. package/dist/src/gl/dataToVertices.d.ts.map +1 -1
  174. package/dist/src/gl/dataToVertices.js +121 -95
  175. package/dist/src/gl/glslScaleGenerator.d.ts +5 -2
  176. package/dist/src/gl/glslScaleGenerator.d.ts.map +1 -1
  177. package/dist/src/gl/glslScaleGenerator.js +15 -15
  178. package/dist/src/gl/vertexRangeIndex.d.ts +23 -0
  179. package/dist/src/gl/vertexRangeIndex.d.ts.map +1 -0
  180. package/dist/src/gl/vertexRangeIndex.js +150 -0
  181. package/dist/src/index.d.ts +3 -9
  182. package/dist/src/index.d.ts.map +1 -1
  183. package/dist/src/index.js +5 -114
  184. package/dist/src/marks/__snapshots__/shaderSnapshot.test.js.snap +4462 -0
  185. package/dist/src/marks/link.d.ts.map +1 -1
  186. package/dist/src/marks/link.js +0 -23
  187. package/dist/src/marks/mark.d.ts +8 -1
  188. package/dist/src/marks/mark.d.ts.map +1 -1
  189. package/dist/src/marks/mark.js +61 -20
  190. package/dist/src/marks/markUtils.d.ts +18 -1
  191. package/dist/src/marks/markUtils.d.ts.map +1 -1
  192. package/dist/src/marks/markUtils.js +52 -4
  193. package/dist/src/marks/point.d.ts.map +1 -1
  194. package/dist/src/marks/point.js +6 -26
  195. package/dist/src/marks/rect.d.ts.map +1 -1
  196. package/dist/src/marks/rect.js +13 -21
  197. package/dist/src/marks/rule.d.ts +7 -2
  198. package/dist/src/marks/rule.d.ts.map +1 -1
  199. package/dist/src/marks/rule.js +125 -16
  200. package/dist/src/marks/text.d.ts.map +1 -1
  201. package/dist/src/marks/text.js +5 -47
  202. package/dist/src/minimal.d.ts +8 -0
  203. package/dist/src/minimal.d.ts.map +1 -0
  204. package/dist/src/minimal.js +21 -0
  205. package/dist/src/paramRuntime/expressionCompiler.d.ts +2 -1
  206. package/dist/src/paramRuntime/expressionCompiler.d.ts.map +1 -1
  207. package/dist/src/paramRuntime/expressionCompiler.js +3 -2
  208. package/dist/src/paramRuntime/expressionRef.d.ts +4 -1
  209. package/dist/src/paramRuntime/expressionRef.d.ts.map +1 -1
  210. package/dist/src/paramRuntime/expressionRef.js +10 -3
  211. package/dist/src/paramRuntime/graphRuntime.d.ts.map +1 -1
  212. package/dist/src/paramRuntime/graphRuntime.js +15 -6
  213. package/dist/src/paramRuntime/paramRuntime.d.ts +8 -2
  214. package/dist/src/paramRuntime/paramRuntime.d.ts.map +1 -1
  215. package/dist/src/paramRuntime/paramRuntime.js +10 -5
  216. package/dist/src/paramRuntime/types.d.ts +1 -0
  217. package/dist/src/paramRuntime/types.d.ts.map +1 -1
  218. package/dist/src/paramRuntime/types.js +1 -0
  219. package/dist/src/paramRuntime/viewParamRuntime.d.ts +24 -4
  220. package/dist/src/paramRuntime/viewParamRuntime.d.ts.map +1 -1
  221. package/dist/src/paramRuntime/viewParamRuntime.js +52 -6
  222. package/dist/src/scale/scale.d.ts.map +1 -1
  223. package/dist/src/scale/scale.js +14 -7
  224. package/dist/src/scales/axisResolution.d.ts.map +1 -1
  225. package/dist/src/scales/axisResolution.js +9 -5
  226. package/dist/src/scales/domainPlanner.d.ts +82 -16
  227. package/dist/src/scales/domainPlanner.d.ts.map +1 -1
  228. package/dist/src/scales/domainPlanner.js +364 -131
  229. package/dist/src/scales/indexLikeDomainUtils.d.ts +29 -0
  230. package/dist/src/scales/indexLikeDomainUtils.d.ts.map +1 -0
  231. package/dist/src/scales/indexLikeDomainUtils.js +67 -0
  232. package/dist/src/scales/resolutionMemberOrder.d.ts +15 -0
  233. package/dist/src/scales/resolutionMemberOrder.d.ts.map +1 -0
  234. package/dist/src/scales/resolutionMemberOrder.js +22 -0
  235. package/dist/src/scales/scaleInstanceManager.d.ts.map +1 -1
  236. package/dist/src/scales/scaleInstanceManager.js +7 -2
  237. package/dist/src/scales/scaleInteractionController.d.ts.map +1 -1
  238. package/dist/src/scales/scaleInteractionController.js +43 -4
  239. package/dist/src/scales/scalePropsResolver.d.ts +5 -3
  240. package/dist/src/scales/scalePropsResolver.d.ts.map +1 -1
  241. package/dist/src/scales/scalePropsResolver.js +108 -8
  242. package/dist/src/scales/scaleResolution.d.ts +35 -1
  243. package/dist/src/scales/scaleResolution.d.ts.map +1 -1
  244. package/dist/src/scales/scaleResolution.js +381 -66
  245. package/dist/src/scales/scaleResolutionTestUtils.d.ts.map +1 -1
  246. package/dist/src/scales/scaleResolutionTestUtils.js +6 -2
  247. package/dist/src/scales/scaleRules.d.ts.map +1 -1
  248. package/dist/src/scales/scaleRules.js +16 -2
  249. package/dist/src/scales/selectionDomainUtils.d.ts +30 -0
  250. package/dist/src/scales/selectionDomainUtils.d.ts.map +1 -1
  251. package/dist/src/scales/selectionDomainUtils.js +116 -1
  252. package/dist/src/screenshotExport.d.ts +23 -0
  253. package/dist/src/screenshotExport.d.ts.map +1 -0
  254. package/dist/src/screenshotExport.js +44 -0
  255. package/dist/src/screenshotHarness.d.ts.map +1 -1
  256. package/dist/src/screenshotHarness.js +26 -25
  257. package/dist/src/spec/axis.d.ts +43 -32
  258. package/dist/src/spec/channel.d.ts +19 -13
  259. package/dist/src/spec/config.d.ts +264 -0
  260. package/dist/src/spec/data.d.ts +19 -0
  261. package/dist/src/spec/decoration.d.ts +51 -0
  262. package/dist/src/spec/exampleFiles.d.ts +12 -0
  263. package/dist/src/spec/exampleFiles.d.ts.map +1 -0
  264. package/dist/src/spec/exampleFiles.js +52 -0
  265. package/dist/src/spec/font.d.ts +1 -1
  266. package/dist/src/spec/mark.d.ts +97 -13
  267. package/dist/src/spec/parameter.d.ts +30 -10
  268. package/dist/src/spec/root.d.ts +14 -0
  269. package/dist/src/spec/scale.d.ts +31 -14
  270. package/dist/src/spec/title.d.ts +13 -2
  271. package/dist/src/spec/tooltip.d.ts +1 -1
  272. package/dist/src/spec/transform.d.ts +39 -4
  273. package/dist/src/spec/view.d.ts +67 -19
  274. package/dist/src/styles/genome-spy.css +55 -55
  275. package/dist/src/styles/genome-spy.css.d.ts +1 -1
  276. package/dist/src/styles/genome-spy.css.d.ts.map +1 -1
  277. package/dist/src/styles/genome-spy.css.js +23 -22
  278. package/dist/src/testSetup.d.ts +2 -0
  279. package/dist/src/testSetup.d.ts.map +1 -0
  280. package/dist/src/testSetup.js +5 -0
  281. package/dist/src/tooltip/dataTooltipHandler.js +8 -2
  282. package/dist/src/tooltip/tooltipContext.d.ts.map +1 -1
  283. package/dist/src/tooltip/tooltipContext.js +3 -2
  284. package/dist/src/types/embedApi.d.ts +7 -0
  285. package/dist/src/types/encoder.d.ts +17 -15
  286. package/dist/src/types/scaleResolutionApi.d.ts +20 -0
  287. package/dist/src/types/viewContext.d.ts +23 -1
  288. package/dist/src/utils/expression.d.ts +18 -10
  289. package/dist/src/utils/expression.d.ts.map +1 -1
  290. package/dist/src/utils/expression.js +354 -19
  291. package/dist/src/utils/field.d.ts.map +1 -1
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  293. package/dist/src/utils/inertia.d.ts.map +1 -1
  294. package/dist/src/utils/inertia.js +0 -1
  295. package/dist/src/utils/inputBinding.d.ts +1 -1
  296. package/dist/src/utils/interaction.d.ts +109 -0
  297. package/dist/src/utils/interaction.d.ts.map +1 -0
  298. package/dist/src/utils/interaction.js +200 -0
  299. package/dist/src/utils/interactionEvent.d.ts +21 -42
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  302. package/dist/src/utils/kWayMerge.js +1 -1
  303. package/dist/src/utils/mergeObjects.d.ts.map +1 -1
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  305. package/dist/src/utils/radixSort.d.ts.map +1 -1
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  307. package/dist/src/utils/throttle.d.ts.map +1 -1
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  309. package/dist/src/utils/ui/tooltip.d.ts +1 -0
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  311. package/dist/src/utils/ui/tooltip.js +1 -0
  312. package/dist/src/utils/url.js +1 -1
  313. package/dist/src/view/axisGridView.d.ts +1 -1
  314. package/dist/src/view/axisGridView.d.ts.map +1 -1
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  322. package/dist/src/view/containerMutationHelper.d.ts +3 -0
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  325. package/dist/src/view/facetView.d.ts +1 -1
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  327. package/dist/src/view/flowBuilder.d.ts +1 -1
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  330. package/dist/src/view/gridView/gridChild.d.ts +6 -0
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