@genome-spy/core 0.73.0 → 0.75.0

package/dist/src/view/flowBuilder.js

@@ -106,7 +106,8 @@ export function buildDataFlow(
             } catch (e) {
                 console.warn(e);
                 throw new Error(
-                    `Cannot initialize "${params.type}" transform: ${e}`
+                    `Cannot initialize "${params.type}" transform: ${e}`,
+                    { cause: e }
                 );
             }
 
@@ -260,7 +261,6 @@ export function buildDataFlow(
                 });
                 processView(node.ref);
             },
-            // eslint-disable-next-line no-loop-func
             postOrder: () => {
                 const { nodeStackDepth } = viewStack.pop();
                 nodeStack.length = nodeStackDepth;
@@ -312,7 +312,7 @@ export function linearizeLocusAccess(view) {
     /** @type {FlowNode[]} */
     const transforms = [];
 
-    /** @type {Encoding} */
+    /** @type {Record<string, any>} */
     const rewrittenEncoding = {};
 
     // Use mark.encoding so we see the same channel defs that encoders consume,
@@ -374,12 +374,16 @@ export function linearizeLocusAccess(view) {
 
                 // Prefer using the spec directly because getEncoding() returns inherited props too.
                 // TODO: I think this is not robust enough. Needs more work...
-                /** @type {any} */
+                /** @type {Record<string, any>} */
+                const currentEncoding =
+                    view.spec.encoding?.[channel] ??
+                    configuredEncoding[channel] ??
+                    encoding[channel] ??
+                    {};
+
+                /** @type {Record<string, any>} */
                 const newFieldDef = {
-                    ...(view.spec.encoding?.[channel] ??
-                        configuredEncoding[channel] ??
-                        encoding[channel] ??
-                        {}),
+                    ...currentEncoding,
                     field: linearizedField,
                 };
                 delete newFieldDef.chrom;
@@ -435,7 +439,7 @@ export function linearizeLocusAccess(view) {
 
 /**
  * @param {import("./unitView.js").default} view
- * @param {import("../spec/channel.js").Encoding} [encoding]
+ * @param {Record<string, any>} [encoding]
  * @returns {import("../spec/transform.js").CompareParams}
  */
 function getCompareParamsForView(view, encoding) {

package/dist/src/view/gridView/gridChild.d.ts

@@ -46,6 +46,12 @@ export default class GridChild {
     selectionRect: SelectionRect;
     /** @type {UnitView} */
     title: UnitView;
+    /** @type {number} */
+    backgroundZindex: number;
+    /** @type {number | undefined} */
+    backgroundStrokeZindex: number | undefined;
+    /** @type {number} */
+    titleZindex: number;
     /** @type {Rectangle} */
     coords: Rectangle;
     getChildren(): Generator<import("../view.js").default<import("../../spec/view.js").ViewSpec>, void, unknown>;

package/dist/src/view/gridView/gridChild.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"gridChild.d.ts","sourceRoot":"","sources":["../../../../src/view/gridView/gridChild.js"],"names":[],"mappings":"AAu0BA;;;;;GAKG;AACH,qDALW,OAAO,yBAAyB,EAAE,uBAAuB,CAAC,MAAM,CAAC,sBACjE,OAAO,aACP,MAAM,GACJ,OAAO,yBAAyB,EAAE,WAAW,GAAG,SAAS,CAyBrE;AAcD;;;GAGG;AACH,iDAHW,OAAO,oBAAoB,EAAE,cAAc,GACzC,OAAO,oBAAoB,EAAE,QAAQ,CA6BjD;AAED;;;GAGG;AACH,uDAHW,OAAO,oBAAoB,EAAE,cAAc,GACzC,OAAO,oBAAoB,EAAE,QAAQ,CA4CjD;AAx6BD;IACI;;;;;;OAMG;IAEH;;;;OAIG;IACH,kBAJW,OAAO,YAAY,EAAE,OAAO,gBAC5B,OAAO,qBAAqB,EAAE,OAAO,UACrC,MAAM,EAgGhB;IA7FG,gGAAgC;IAChC,0EAAgB;IAChB,eAAoB;IAEpB,uBAAuB;IACvB,YADW,QAAQ,CACQ;IAE3B,uBAAuB;IACvB,kBADW,QAAQ,CACc;IAEjC,sFAAsF;IACtF,MADW,OAAO,CAAC,MAAM,CAAC,OAAO,oBAAoB,EAAE,UAAU,EAAE,QAAQ,CAAC,CAAC,CAC/D;IAEd,+FAA+F;IAC/F,WADW,OAAO,CAAC,MAAM,CAAC,OAAO,oBAAoB,EAAE,UAAU,EAAE,YAAY,CAAC,CAAC,CAC9D;IAEnB,mFAAmF;IACnF,YADW,OAAO,CAAC,MAAM,CAAC,OAAO,gBAAgB,EAAE,eAAe,EAAE,SAAS,CAAC,CAAC,CAC3D;IAEpB,4BAA4B;IAC5B,eADW,aAAa,CACM;IAE9B,uBAAuB;IACvB,OADW,QAAQ,CACG;IAEtB,wBAAwB;IACxB,QADW,SAAS,CACQ;IAyhBhC,6GAiBC;IAED;;OAEG;IACH,4BAwKC;IAED;;OAEG;IACH,yBAWC;IAED,uBAqBC;IAED,iCAEC;;CACJ;qBApzBoB,gBAAgB;qBANK,gBAAgB;yBADjC,oBAAoB;sBASvB,gBAAgB;0BACZ,oBAAoB;sBALxB,wBAAwB;oBAF1B,sBAAsB"}
+{"version":3,"file":"gridChild.d.ts","sourceRoot":"","sources":["../../../../src/view/gridView/gridChild.js"],"names":[],"mappings":"AAo2BA;;;;;GAKG;AACH,qDALW,OAAO,yBAAyB,EAAE,uBAAuB,CAAC,MAAM,CAAC,sBACjE,OAAO,aACP,MAAM,GACJ,OAAO,yBAAyB,EAAE,WAAW,GAAG,SAAS,CAyBrE;AAcD;;;GAGG;AACH,iDAHW,OAAO,oBAAoB,EAAE,cAAc,GACzC,OAAO,oBAAoB,EAAE,QAAQ,CA6BjD;AAED;;;GAGG;AACH,uDAHW,OAAO,oBAAoB,EAAE,cAAc,GACzC,OAAO,oBAAoB,EAAE,QAAQ,CA4CjD;AAn8BD;IACI;;;;;;OAMG;IAEH;;;;OAIG;IACH,kBAJW,OAAO,YAAY,EAAE,OAAO,gBAC5B,OAAO,qBAAqB,EAAE,OAAO,UACrC,MAAM,EAmHhB;IAhHG,gGAAgC;IAChC,0EAAgB;IAChB,eAAoB;IAEpB,uBAAuB;IACvB,YADW,QAAQ,CACQ;IAE3B,uBAAuB;IACvB,kBADW,QAAQ,CACc;IAEjC,sFAAsF;IACtF,MADW,OAAO,CAAC,MAAM,CAAC,OAAO,oBAAoB,EAAE,UAAU,EAAE,QAAQ,CAAC,CAAC,CAC/D;IAEd,+FAA+F;IAC/F,WADW,OAAO,CAAC,MAAM,CAAC,OAAO,oBAAoB,EAAE,UAAU,EAAE,YAAY,CAAC,CAAC,CAC9D;IAEnB,mFAAmF;IACnF,YADW,OAAO,CAAC,MAAM,CAAC,OAAO,gBAAgB,EAAE,eAAe,EAAE,SAAS,CAAC,CAAC,CAC3D;IAEpB,4BAA4B;IAC5B,eADW,aAAa,CACM;IAE9B,uBAAuB;IACvB,OADW,QAAQ,CACG;IAEtB,qBAAqB;IACrB,kBADW,MAAM,CACQ;IAEzB,iCAAiC;IACjC,wBADW,MAAM,GAAG,SAAS,CACU;IAEvC,qBAAqB;IACrB,aADW,MAAM,CACG;IAEpB,wBAAwB;IACxB,QADW,SAAS,CACQ;IAwhBhC,6GAiBC;IAED;;OAEG;IACH,4BA2LC;IAED;;OAEG;IACH,yBAWC;IAED,uBAqBC;IAED,iCAEC;;CACJ;qBAj1BoB,gBAAgB;qBANK,gBAAgB;yBADjC,oBAAoB;sBASvB,gBAAgB;0BACoB,oBAAoB;sBALxD,wBAAwB;oBAF1B,sBAAsB"}

package/dist/src/view/gridView/gridChild.js

@@ -14,14 +14,16 @@ import LayerView from "../layerView.js";
 import Padding from "../layout/padding.js";
 import Point from "../layout/point.js";
 import Rectangle from "../layout/rectangle.js";
-import createTitle from "../title.js";
+import createTitle, { resolveTitleSpec } from "../title.js";
 import UnitView from "../unitView.js";
 import { markViewAsNonAddressable } from "../viewSelectors.js";
 import Scrollbar from "./scrollbar.js";
-import SelectionRect from "./selectionRect.js";
+import SelectionRect, { INTERVAL_DRAG_ACTIVE_PARAM } from "./selectionRect.js";
 import { normalizeIntervalForSelection } from "../../scales/selectionDomainUtils.js";
 import { zoomDomainByScaleType } from "../../scales/zoomDomainUtils.js";
 import { createEventFilterFunction } from "../../utils/expression.js";
+import { getConfiguredViewBackground } from "../../config/viewConfig.js";
+import { getConfiguredAxisDefaults } from "../../config/axisConfig.js";
 
 export default class GridChild {
     /**
@@ -63,12 +65,26 @@ export default class GridChild {
         /** @type {UnitView} */
         this.title = undefined;
 
+        /** @type {number} */
+        this.backgroundZindex = 0;
+
+        /** @type {number | undefined} */
+        this.backgroundStrokeZindex = undefined;
+
+        /** @type {number} */
+        this.titleZindex = 1;
+
         /** @type {Rectangle} */
         this.coords = Rectangle.ZERO;
 
         if (view.needsAxes.x || view.needsAxes.y) {
             const spec = view.spec;
-            const viewBackground = "view" in spec ? spec?.view : undefined;
+            const viewBackground = getConfiguredViewBackground(
+                view.getConfigScopes(),
+                "view" in spec ? spec.view : undefined
+            );
+            this.backgroundZindex = viewBackground?.zindex ?? 0;
+            this.backgroundStrokeZindex = viewBackground?.strokeZindex;
 
             const backgroundSpec = createBackground(viewBackground);
             if (backgroundSpec) {
@@ -104,7 +120,12 @@ export default class GridChild {
                 });
             }
 
-            const title = createTitle(view.spec.title);
+            const titleSpec = resolveTitleSpec(
+                view.spec.title,
+                view.getConfigScopes()
+            );
+            this.titleZindex = titleSpec?.zindex ?? 1;
+            const title = createTitle(titleSpec);
             if (title) {
                 const unitView = new UnitView(
                     title,
@@ -136,11 +157,6 @@ export default class GridChild {
     #setupIntervalSelection() {
         const view = this.view;
 
-        // TODO: Move to context
-        const setCursor = (/** @type {string} */ cursor) => {
-            this.view.context.glHelper.canvas.style.cursor = cursor;
-        };
-
         // TODO: If the child is a LayerView, selection params should be pulled from its children as well
         for (const [name, param] of view.paramRuntime.paramConfigs) {
             if (!("select" in param)) {
@@ -158,11 +174,11 @@ export default class GridChild {
             const scaleResolutions = Object.fromEntries(
                 channels.map((channel) => {
                     const resolution = this.view.getScaleResolution(channel);
-                    const scale = resolution?.getScale();
+                    const scaleType = resolution?.getResolvedScaleType();
 
-                    if (!scale || !isContinuous(scale.type)) {
+                    if (!resolution || !scaleType || !isContinuous(scaleType)) {
                         throw new Error(
-                            `No continuous scale found for interval selection param "${name}" on channel "${channel}"! Scale type is "${scale?.type ?? "none"}".`
+                            `No continuous scale found for interval selection param "${name}" on channel "${channel}"! Scale type is "${scaleType ?? "none"}".`
                         );
                     }
                     return [channel, resolution];
@@ -254,7 +270,6 @@ export default class GridChild {
 
             const clearSelection = () => {
                 setter(createIntervalSelection(channels));
-                setCursor(null);
             };
 
             this.selectionRect = new SelectionRect(
@@ -262,6 +277,12 @@ export default class GridChild {
                 selectionExpr,
                 select.mark
             );
+            const setIntervalDragActive = (/** @type {boolean} */ active) => {
+                this.selectionRect.paramRuntime.setValue(
+                    INTERVAL_DRAG_ACTIVE_PARAM,
+                    active
+                );
+            };
 
             // WARNING! The following is an async method! Seems to work (by chance).
             // TODO: Should be called and awaited in a sensible place. Maybe provide some
@@ -318,7 +339,7 @@ export default class GridChild {
                 return Rectangle.create(a.x, a.y, b.x - a.x, b.y - a.y);
             };
 
-            view.addInteractionEventListener("mousedown", (coords, event) => {
+            view.addInteractionListener("mousedown", (event) => {
                 if (event.mouseEvent.button != 0) {
                     return;
                 }
@@ -332,7 +353,7 @@ export default class GridChild {
 
                 if (translatedRectangle) {
                     // Started dragging an existing selection
-                    setCursor("grabbing");
+                    setIntervalDragActive(true);
                     // Start of dragging should prevent click propagation so that
                     // no other selections or events are triggered.
                     preventNextClickPropagation = true;
@@ -355,12 +376,9 @@ export default class GridChild {
                     } else if (isActiveIntervalSelection(selectionExpr())) {
                         // If mouse button is released and there was a selection,
                         // it should be cleared unless the viewport was panned by dragging.
-                        /** @type {import("../view.js").InteractionEventListener} */
-                        const listener = (coords, event) => {
-                            view.removeInteractionEventListener(
-                                "mouseup",
-                                listener
-                            );
+                        /** @type {import("../view.js").InteractionListener} */
+                        const listener = (event) => {
+                            view.removeInteractionListener("mouseup", listener);
                             const mouseUpPoint = event.point;
 
                             // Retain selection if the viewport is panned by dragging
@@ -372,7 +390,7 @@ export default class GridChild {
                                 clearSelection();
                             }
                         };
-                        view.addInteractionEventListener("mouseup", listener);
+                        view.addInteractionListener("mouseup", listener);
                         return;
                     } else {
                         return;
@@ -381,6 +399,7 @@ export default class GridChild {
 
                 // Prevent panning interaction
                 event.stopPropagation();
+                view.context.suspendHoverTracking();
 
                 const start = event.point;
                 const viewOffset = Point.fromMouseEvent(
@@ -454,27 +473,28 @@ export default class GridChild {
                     setter({ type: "interval", intervals });
                 };
 
-                const mouseUpListener = () => {
+                const mouseUpListener = (/** @type {MouseEvent} */ upEvent) => {
                     document.removeEventListener(
                         "mousemove",
                         mouseMoveListener
                     );
                     document.removeEventListener("mouseup", mouseUpListener);
 
+                    setIntervalDragActive(false);
                     nowBrushing = false;
                     if (translatedRectangle) {
-                        setCursor("move");
                         translatedRectangle = null;
                     }
+                    view.context.resumeHoverTracking(upEvent);
                 };
                 document.addEventListener("mousemove", mouseMoveListener);
 
                 document.addEventListener("mouseup", mouseUpListener);
             });
 
-            view.addInteractionEventListener(
+            view.addInteractionListener(
                 "click",
-                (coords, event) => {
+                (event) => {
                     if (event.mouseEvent.button == 0) {
                         if (preventNextClickPropagation) {
                             event.stopPropagation();
@@ -489,9 +509,9 @@ export default class GridChild {
                 selectionContainsPoint(selectionExpr(), invertPoint(point));
 
             // TODO: Make behavior configurable
-            view.addInteractionEventListener(
+            view.addInteractionListener(
                 "dblclick",
-                (coords, event) => {
+                (event) => {
                     if (isPointInsideSelection(event.point)) {
                         clearSelection();
                         event.stopPropagation();
@@ -500,11 +520,8 @@ export default class GridChild {
                 true
             );
 
-            view.addInteractionEventListener("wheel", (coords, event) => {
-                const wheelEvent = event.uiEvent;
-                if (!(wheelEvent instanceof WheelEvent)) {
-                    return;
-                }
+            view.addInteractionListener("wheel", (event) => {
+                const wheelEvent = event.wheelEvent;
 
                 if (
                     !zoomEventConfig ||
@@ -581,21 +598,14 @@ export default class GridChild {
             });
 
             // Handle mouse cursor changes
-            view.addInteractionEventListener("mousemove", (coords, event) => {
+            view.addInteractionListener("mousemove", (event) => {
                 if (isPointInsideSelection(event.point)) {
                     // Brushing and translating the existing brush are different actions.
                     if (!nowBrushing) {
                         mouseOver = true;
-                        // When translation is active, the cursor shows a grabbing hand.
-                        if (!translatedRectangle) {
-                            setCursor("move");
-                        }
                     }
                 } else {
                     mouseOver = false;
-                    if (!translatedRectangle) {
-                        setCursor(null);
-                    }
                 }
             });
         }
@@ -703,10 +713,29 @@ export default class GridChild {
          */
         const createAxisGrid = async (r, channel, axisParent) => {
             const props = getAxisPropsWithDefaults(r, channel);
+            if (!props) {
+                return;
+            }
 
-            if (props && (props.grid || props.chromGrid)) {
+            const defaults = getConfiguredAxisDefaults(
+                axisParent.getConfigScopes(),
+                {
+                    channel,
+                    orient: props.orient,
+                    type: /** @type {import("../../spec/channel.js").Type} */ (
+                        r.scaleResolution.type
+                    ),
+                    style: props.style,
+                }
+            );
+            const effectiveProps = {
+                ...defaults,
+                ...props,
+            };
+
+            if (effectiveProps.grid || effectiveProps.chromGrid) {
                 const axisGridView = new AxisGridView(
-                    props,
+                    effectiveProps,
                     r.scaleResolution.type,
                     this.layoutParent.context,
                     this.layoutParent,

package/dist/src/view/gridView/gridView.d.ts.map

@@ -1 +1 @@
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