@genome-spy/core 0.67.0 → 0.69.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/bundle/index.es.js +15884 -13130
- package/dist/bundle/index.js +130 -149
- package/dist/schema.json +6498 -6191
- package/dist/src/data/collector.d.ts +20 -0
- package/dist/src/data/collector.d.ts.map +1 -1
- package/dist/src/data/collector.js +148 -0
- package/dist/src/data/dataFlow.d.ts +6 -0
- package/dist/src/data/dataFlow.d.ts.map +1 -1
- package/dist/src/data/dataFlow.js +20 -0
- package/dist/src/data/flowInit.d.ts.map +1 -1
- package/dist/src/data/flowInit.js +2 -3
- package/dist/src/data/flowNode.d.ts +33 -10
- package/dist/src/data/flowNode.d.ts.map +1 -1
- package/dist/src/data/flowNode.js +84 -13
- package/dist/src/data/flowTestUtils.d.ts +2 -2
- package/dist/src/data/flowTestUtils.d.ts.map +1 -1
- package/dist/src/data/flowTestUtils.js +5 -4
- package/dist/src/data/keyIndex.d.ts +18 -0
- package/dist/src/data/keyIndex.d.ts.map +1 -0
- package/dist/src/data/keyIndex.js +241 -0
- package/dist/src/data/keyIndex.test.d.ts +2 -0
- package/dist/src/data/keyIndex.test.d.ts.map +1 -0
- package/dist/src/data/sources/dataSource.d.ts.map +1 -1
- package/dist/src/data/sources/dataSource.js +7 -3
- package/dist/src/data/sources/dataSourceFactory.d.ts +14 -12
- package/dist/src/data/sources/dataSourceFactory.d.ts.map +1 -1
- package/dist/src/data/sources/dataSourceFactory.js +52 -16
- package/dist/src/data/sources/lazy/bigBedSource.d.ts.map +1 -1
- package/dist/src/data/sources/lazy/bigBedSource.js +11 -10
- package/dist/src/data/sources/lazy/bigWigSource.d.ts.map +1 -1
- package/dist/src/data/sources/lazy/bigWigSource.js +11 -10
- package/dist/src/data/sources/lazy/mockLazySource.d.ts +29 -0
- package/dist/src/data/sources/lazy/mockLazySource.d.ts.map +1 -0
- package/dist/src/data/sources/lazy/mockLazySource.js +44 -0
- package/dist/src/data/sources/lazy/singleAxisLazySource.d.ts +22 -1
- package/dist/src/data/sources/lazy/singleAxisLazySource.d.ts.map +1 -1
- package/dist/src/data/sources/lazy/singleAxisLazySource.js +34 -2
- package/dist/src/data/sources/lazy/singleAxisWindowedSource.d.ts.map +1 -1
- package/dist/src/data/sources/lazy/singleAxisWindowedSource.js +16 -1
- package/dist/src/data/sources/lazy/tabixSource.d.ts +0 -1
- package/dist/src/data/sources/lazy/tabixSource.d.ts.map +1 -1
- package/dist/src/data/sources/lazy/tabixSource.js +56 -16
- package/dist/src/data/sources/sequenceSource.d.ts.map +1 -1
- package/dist/src/data/sources/sequenceSource.js +5 -3
- package/dist/src/data/sources/urlSource.d.ts.map +1 -1
- package/dist/src/data/sources/urlSource.js +7 -3
- package/dist/src/data/transforms/filter.d.ts +4 -4
- package/dist/src/data/transforms/filter.d.ts.map +1 -1
- package/dist/src/data/transforms/filter.js +13 -7
- package/dist/src/data/transforms/filterScoredLabels.d.ts.map +1 -1
- package/dist/src/data/transforms/filterScoredLabels.js +11 -6
- package/dist/src/data/transforms/filterScoredLabels.test.d.ts +2 -0
- package/dist/src/data/transforms/filterScoredLabels.test.d.ts.map +1 -0
- package/dist/src/data/transforms/formula.d.ts +4 -4
- package/dist/src/data/transforms/formula.d.ts.map +1 -1
- package/dist/src/data/transforms/formula.js +12 -6
- package/dist/src/data/transforms/measureText.d.ts +2 -2
- package/dist/src/data/transforms/measureText.d.ts.map +1 -1
- package/dist/src/data/transforms/measureText.js +16 -12
- package/dist/src/data/transforms/stack.d.ts.map +1 -1
- package/dist/src/data/transforms/stack.js +1 -0
- package/dist/src/data/transforms/transform.d.ts +2 -2
- package/dist/src/data/transforms/transform.d.ts.map +1 -1
- package/dist/src/data/transforms/transform.js +3 -3
- package/dist/src/encoder/accessor.d.ts +51 -4
- package/dist/src/encoder/accessor.d.ts.map +1 -1
- package/dist/src/encoder/accessor.js +174 -10
- package/dist/src/encoder/encoder.d.ts +11 -2
- package/dist/src/encoder/encoder.d.ts.map +1 -1
- package/dist/src/encoder/encoder.js +29 -9
- package/dist/src/encoder/metadataChannels.d.ts +15 -0
- package/dist/src/encoder/metadataChannels.d.ts.map +1 -0
- package/dist/src/encoder/metadataChannels.js +65 -0
- package/dist/src/encoder/metadataChannels.test.d.ts +2 -0
- package/dist/src/encoder/metadataChannels.test.d.ts.map +1 -0
- package/dist/src/genome/genome.d.ts +8 -0
- package/dist/src/genome/genome.d.ts.map +1 -1
- package/dist/src/genome/genome.js +16 -1
- package/dist/src/genome/scaleLocus.d.ts.map +1 -1
- package/dist/src/genome/scaleLocus.js +14 -1
- package/dist/src/genomeSpy/containerUi.d.ts +0 -1
- package/dist/src/genomeSpy/containerUi.d.ts.map +1 -1
- package/dist/src/genomeSpy/containerUi.js +0 -14
- package/dist/src/genomeSpy/inputBindingManager.js +1 -1
- package/dist/src/genomeSpy/interactionController.d.ts.map +1 -1
- package/dist/src/genomeSpy/interactionController.js +7 -1
- package/dist/src/genomeSpy/loadingIndicatorManager.d.ts +3 -7
- package/dist/src/genomeSpy/loadingIndicatorManager.d.ts.map +1 -1
- package/dist/src/genomeSpy/loadingIndicatorManager.js +68 -20
- package/dist/src/genomeSpy/loadingStatusRegistry.d.ts +52 -0
- package/dist/src/genomeSpy/loadingStatusRegistry.d.ts.map +1 -0
- package/dist/src/genomeSpy/loadingStatusRegistry.js +86 -0
- package/dist/src/genomeSpy/viewContextFactory.d.ts.map +1 -1
- package/dist/src/genomeSpy/viewContextFactory.js +0 -1
- package/dist/src/genomeSpy/viewDataInit.d.ts.map +1 -1
- package/dist/src/genomeSpy/viewDataInit.js +56 -11
- package/dist/src/genomeSpy.d.ts +0 -2
- package/dist/src/genomeSpy.d.ts.map +1 -1
- package/dist/src/genomeSpy.js +47 -27
- package/dist/src/gl/glslScaleGenerator.js +1 -1
- package/dist/src/marks/mark.d.ts.map +1 -1
- package/dist/src/marks/mark.js +40 -41
- package/dist/src/marks/markUtils.js +1 -1
- package/dist/src/marks/point.d.ts.map +1 -1
- package/dist/src/marks/point.js +4 -6
- package/dist/src/paramRuntime/expressionCompiler.d.ts +7 -0
- package/dist/src/paramRuntime/expressionCompiler.d.ts.map +1 -0
- package/dist/src/paramRuntime/expressionCompiler.js +10 -0
- package/dist/src/paramRuntime/expressionRef.d.ts +20 -0
- package/dist/src/paramRuntime/expressionRef.d.ts.map +1 -0
- package/dist/src/paramRuntime/expressionRef.js +95 -0
- package/dist/src/paramRuntime/expressionRef.test.d.ts +2 -0
- package/dist/src/paramRuntime/expressionRef.test.d.ts.map +1 -0
- package/dist/src/paramRuntime/graphRuntime.d.ts +176 -0
- package/dist/src/paramRuntime/graphRuntime.d.ts.map +1 -0
- package/dist/src/paramRuntime/graphRuntime.js +628 -0
- package/dist/src/paramRuntime/graphRuntime.test.d.ts +2 -0
- package/dist/src/paramRuntime/graphRuntime.test.d.ts.map +1 -0
- package/dist/src/paramRuntime/index.d.ts +9 -0
- package/dist/src/paramRuntime/index.d.ts.map +1 -0
- package/dist/src/paramRuntime/index.js +8 -0
- package/dist/src/paramRuntime/lifecycleRegistry.d.ts +27 -0
- package/dist/src/paramRuntime/lifecycleRegistry.d.ts.map +1 -0
- package/dist/src/paramRuntime/lifecycleRegistry.js +54 -0
- package/dist/src/paramRuntime/paramRuntime.d.ts +165 -0
- package/dist/src/paramRuntime/paramRuntime.d.ts.map +1 -0
- package/dist/src/paramRuntime/paramRuntime.js +222 -0
- package/dist/src/paramRuntime/paramRuntime.test.d.ts +2 -0
- package/dist/src/paramRuntime/paramRuntime.test.d.ts.map +1 -0
- package/dist/src/paramRuntime/paramStore.d.ts +68 -0
- package/dist/src/paramRuntime/paramStore.d.ts.map +1 -0
- package/dist/src/paramRuntime/paramStore.js +148 -0
- package/dist/src/paramRuntime/paramStore.test.d.ts +2 -0
- package/dist/src/paramRuntime/paramStore.test.d.ts.map +1 -0
- package/dist/src/paramRuntime/paramUtils.d.ts +86 -0
- package/dist/src/paramRuntime/paramUtils.d.ts.map +1 -0
- package/dist/src/paramRuntime/paramUtils.js +272 -0
- package/dist/src/paramRuntime/selectionStore.d.ts +6 -0
- package/dist/src/paramRuntime/selectionStore.d.ts.map +1 -0
- package/dist/src/paramRuntime/selectionStore.js +13 -0
- package/dist/src/paramRuntime/types.d.ts +16 -0
- package/dist/src/paramRuntime/types.d.ts.map +1 -0
- package/dist/src/paramRuntime/types.js +25 -0
- package/dist/src/paramRuntime/viewParamRuntime.d.ts +164 -0
- package/dist/src/paramRuntime/viewParamRuntime.d.ts.map +1 -0
- package/dist/src/paramRuntime/viewParamRuntime.js +443 -0
- package/dist/src/scale/scale.d.ts +6 -1
- package/dist/src/scale/scale.d.ts.map +1 -1
- package/dist/src/scale/scale.js +83 -23
- package/dist/src/scales/axisResolution.d.ts.map +1 -1
- package/dist/src/scales/axisResolution.js +10 -0
- package/dist/src/scales/{scaleDomainAggregator.d.ts → domainPlanner.d.ts} +6 -3
- package/dist/src/scales/domainPlanner.d.ts.map +1 -0
- package/dist/src/scales/{scaleDomainAggregator.js → domainPlanner.js} +128 -10
- package/dist/src/scales/domainPlanner.test.d.ts +2 -0
- package/dist/src/scales/domainPlanner.test.d.ts.map +1 -0
- package/dist/src/scales/scaleInstanceManager.d.ts +6 -3
- package/dist/src/scales/scaleInstanceManager.d.ts.map +1 -1
- package/dist/src/scales/scaleInstanceManager.js +17 -11
- package/dist/src/scales/scaleInteractionController.d.ts +6 -0
- package/dist/src/scales/scaleInteractionController.d.ts.map +1 -1
- package/dist/src/scales/scaleInteractionController.js +41 -3
- package/dist/src/scales/scaleResolution.d.ts +20 -17
- package/dist/src/scales/scaleResolution.d.ts.map +1 -1
- package/dist/src/scales/scaleResolution.js +188 -71
- package/dist/src/scales/scaleResolution.test.d.ts.map +1 -1
- package/dist/src/selection/selection.d.ts +21 -0
- package/dist/src/selection/selection.d.ts.map +1 -1
- package/dist/src/selection/selection.js +83 -1
- package/dist/src/spec/channel.d.ts +52 -15
- package/dist/src/spec/coreSchemaRoot.d.ts +53 -0
- package/dist/src/spec/data.d.ts +4 -0
- package/dist/src/spec/parameter.d.ts +16 -11
- package/dist/src/spec/root.d.ts +1 -1
- package/dist/src/spec/testing.d.ts +12 -0
- package/dist/src/spec/testing.d.ts.map +1 -0
- package/dist/src/spec/testing.js +20 -0
- package/dist/src/spec/view.d.ts +157 -41
- package/dist/src/styles/genome-spy.css +3 -31
- package/dist/src/styles/genome-spy.css.d.ts +1 -1
- package/dist/src/styles/genome-spy.css.d.ts.map +1 -1
- package/dist/src/styles/genome-spy.css.js +0 -29
- package/dist/src/tooltip/dataTooltipHandler.d.ts +1 -1
- package/dist/src/tooltip/dataTooltipHandler.js +23 -32
- package/dist/src/tooltip/dataTooltipHandler.test.d.ts +2 -0
- package/dist/src/tooltip/dataTooltipHandler.test.d.ts.map +1 -0
- package/dist/src/tooltip/flattenDatumRows.d.ts +13 -0
- package/dist/src/tooltip/flattenDatumRows.d.ts.map +1 -0
- package/dist/src/tooltip/flattenDatumRows.js +47 -0
- package/dist/src/tooltip/flattenDatumRows.test.d.ts +2 -0
- package/dist/src/tooltip/flattenDatumRows.test.d.ts.map +1 -0
- package/dist/src/tooltip/refseqGeneTooltipHandler.d.ts +1 -1
- package/dist/src/tooltip/refseqGeneTooltipHandler.js +7 -1
- package/dist/src/tooltip/tooltipContext.d.ts +13 -0
- package/dist/src/tooltip/tooltipContext.d.ts.map +1 -0
- package/dist/src/tooltip/tooltipContext.js +543 -0
- package/dist/src/tooltip/tooltipContext.test.d.ts +2 -0
- package/dist/src/tooltip/tooltipContext.test.d.ts.map +1 -0
- package/dist/src/tooltip/tooltipHandler.d.ts +40 -1
- package/dist/src/tooltip/tooltipHandler.d.ts.map +1 -1
- package/dist/src/tooltip/tooltipHandler.ts +62 -1
- package/dist/src/types/encoder.d.ts +38 -3
- package/dist/src/types/rendering.d.ts +4 -3
- package/dist/src/types/viewContext.d.ts +0 -14
- package/dist/src/utils/inputBinding.d.ts +10 -2
- package/dist/src/utils/inputBinding.d.ts.map +1 -1
- package/dist/src/utils/inputBinding.js +12 -3
- package/dist/src/utils/throttle.d.ts +4 -1
- package/dist/src/utils/throttle.d.ts.map +1 -1
- package/dist/src/utils/throttle.js +54 -23
- package/dist/src/utils/throttle.test.d.ts +2 -0
- package/dist/src/utils/throttle.test.d.ts.map +1 -0
- package/dist/src/utils/transition.d.ts +21 -0
- package/dist/src/utils/transition.d.ts.map +1 -1
- package/dist/src/utils/transition.js +28 -0
- package/dist/src/utils/ui/tooltip.d.ts.map +1 -1
- package/dist/src/utils/ui/tooltip.js +7 -1
- package/dist/src/utils/ui/tooltip.test.d.ts +2 -0
- package/dist/src/utils/ui/tooltip.test.d.ts.map +1 -0
- package/dist/src/view/axisGridView.d.ts.map +1 -1
- package/dist/src/view/axisGridView.js +22 -5
- package/dist/src/view/axisView.d.ts.map +1 -1
- package/dist/src/view/axisView.js +20 -5
- package/dist/src/view/concatView.js +3 -3
- package/dist/src/view/containerMutationHelper.js +1 -1
- package/dist/src/view/containerView.d.ts +9 -5
- package/dist/src/view/containerView.d.ts.map +1 -1
- package/dist/src/view/containerView.js +34 -9
- package/dist/src/view/dataReadiness.d.ts +46 -0
- package/dist/src/view/dataReadiness.d.ts.map +1 -0
- package/dist/src/view/dataReadiness.js +267 -0
- package/dist/src/view/dataReadiness.test.d.ts +2 -0
- package/dist/src/view/dataReadiness.test.d.ts.map +1 -0
- package/dist/src/view/facetView.d.ts.map +1 -1
- package/dist/src/view/facetView.js +7 -5
- package/dist/src/view/flowBuilder.d.ts.map +1 -1
- package/dist/src/view/flowBuilder.js +17 -4
- package/dist/src/view/gridView/gridChild.d.ts.map +1 -1
- package/dist/src/view/gridView/gridChild.js +16 -3
- package/dist/src/view/gridView/gridView.d.ts.map +1 -1
- package/dist/src/view/gridView/gridView.js +119 -2
- package/dist/src/view/gridView/scrollbar.d.ts.map +1 -1
- package/dist/src/view/gridView/scrollbar.js +3 -0
- package/dist/src/view/gridView/selectionRect.d.ts +6 -10
- package/dist/src/view/gridView/selectionRect.d.ts.map +1 -1
- package/dist/src/view/gridView/selectionRect.js +22 -24
- package/dist/src/view/gridView/separatorView.d.ts +51 -0
- package/dist/src/view/gridView/separatorView.d.ts.map +1 -0
- package/dist/src/view/gridView/separatorView.js +275 -0
- package/dist/src/view/layerView.d.ts.map +1 -1
- package/dist/src/view/layerView.js +7 -5
- package/dist/src/view/layout/flexLayout.d.ts +0 -30
- package/dist/src/view/layout/flexLayout.d.ts.map +1 -1
- package/dist/src/view/layout/flexLayout.js +0 -86
- package/dist/src/view/multiscale.d.ts +35 -0
- package/dist/src/view/multiscale.d.ts.map +1 -0
- package/dist/src/view/multiscale.js +233 -0
- package/dist/src/view/multiscale.test.d.ts +2 -0
- package/dist/src/view/multiscale.test.d.ts.map +1 -0
- package/dist/src/view/testUtils.d.ts.map +1 -1
- package/dist/src/view/testUtils.js +6 -1
- package/dist/src/view/unitView.d.ts +8 -13
- package/dist/src/view/unitView.d.ts.map +1 -1
- package/dist/src/view/unitView.js +120 -45
- package/dist/src/view/view.d.ts +27 -18
- package/dist/src/view/view.d.ts.map +1 -1
- package/dist/src/view/view.js +298 -37
- package/dist/src/view/viewFactory.d.ts +0 -12
- package/dist/src/view/viewFactory.d.ts.map +1 -1
- package/dist/src/view/viewFactory.js +55 -25
- package/dist/src/view/viewParamRuntime.test.d.ts +2 -0
- package/dist/src/view/viewParamRuntime.test.d.ts.map +1 -0
- package/dist/src/view/viewSelectors.d.ts +148 -0
- package/dist/src/view/viewSelectors.d.ts.map +1 -0
- package/dist/src/view/viewSelectors.js +776 -0
- package/dist/src/view/viewSelectors.test.d.ts +2 -0
- package/dist/src/view/viewSelectors.test.d.ts.map +1 -0
- package/dist/src/view/viewUtils.d.ts +0 -8
- package/dist/src/view/viewUtils.d.ts.map +1 -1
- package/dist/src/view/viewUtils.js +1 -21
- package/package.json +4 -4
- package/dist/src/scales/scaleDomainAggregator.d.ts.map +0 -1
- package/dist/src/scales/scaleDomainAggregator.test.d.ts +0 -2
- package/dist/src/scales/scaleDomainAggregator.test.d.ts.map +0 -1
- package/dist/src/spec/sampleView.d.ts +0 -197
- package/dist/src/view/paramMediator.d.ts +0 -149
- package/dist/src/view/paramMediator.d.ts.map +0 -1
- package/dist/src/view/paramMediator.js +0 -478
- package/dist/src/view/paramMediator.test.d.ts +0 -2
- package/dist/src/view/paramMediator.test.d.ts.map +0 -1
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{"version":3,"file":"viewSelectors.test.d.ts","sourceRoot":"","sources":["../../../src/view/viewSelectors.test.js"],"names":[],"mappings":""}
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{"version":3,"file":"viewUtils.d.ts","sourceRoot":"","sources":["../../../src/view/viewUtils.js"],"names":[],"mappings":"AASA;;;;GAIG;AACH,qCAHW,OAAO,oBAAoB,EAAE,UAAU,GAAG,OAAO,iBAAiB,EAAE,YAAY,GAC9E,IAAI,IAAI,aAAa,CAIjC;AAED;;;;GAIG;AACH,oCAHW,OAAO,oBAAoB,EAAE,aAAa,GAAG,OAAO,iBAAiB,EAAE,YAAY,GACjF,IAAI,IAAI,YAAY,CAOhC;AAED;;;GAGG;AACH,+BAFW,IAAI,6EAMd;AAED;;;;GAIG;AACH,wCAFW,IAAI,UASd;AAED;;GAEG;AACH,kDAFW,IAAI,QAiBd;AAED;;;;;;;GAOG;AACH,4CAFW,IAAI,QAUd;AAED;;;;GAIG;AACH,0DAJW,OAAO,CAAC,OAAO,kBAAkB,EAAE,OAAO,CAAC,EAAE,mBAC7C,MAAM,OAAO,GACX,OAAO,CAAC,IAAI,CAAC,CAmBzB;AAED;;;GAGG;AACH,wCAFW,IAAI;UAGO,QAAQ;aAAW,OAAO,oBAAoB,EAAE,OAAO;WAAS,OAAO,oBAAoB,EAAE,KAAK;UAAQ,OAAO,oBAAoB,EAAE,IAAI;IAqBhK;AAED;;;;;GAKG;AACH,2CALW,OAAO,iBAAiB,EAAE,UAAU,WACpC,MAAM,eACN,OAAO,yBAAyB,EAAE,OAAO,GACvC,OAAO,CAAC,OAAO,iBAAiB,EAAE,QAAQ,CAAC,CAsCvD;AAED;;GAEG;AACH,yCAFW,CAAS,IAAI,EAAJ,IAAI,EAAE,IAAM,EAAN,IAAI,EAAE,KAAE,IAAI,+BAkBrC;AAED;;;GAGG;AACH,0CAFW,IAAI,eAqBd;AAED;;GAEG;AACH,8CAFW,OAAO,WAAW,EAAE,OAAO;;;EAoBrC;iBA3P4C,WAAW;qBAFnC,eAAe"}
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@@ -126,7 +126,7 @@ export function findEncodedFields(view) {
|
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if (view instanceof UnitView) {
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const encoding = view.getEncoding();
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for (const [channel, def] of Object.entries(encoding)) {
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-
if (isFieldDef(def) && "type" in def) {
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if (!Array.isArray(def) && isFieldDef(def) && "type" in def) {
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fieldInfos.push({
|
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view,
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channel,
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@@ -207,26 +207,6 @@ export function stackifyVisitor(visitor) {
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* Finds the descendants having the given name. The root is included in the search.
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*/
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export function findDescendantsByPath(root, name) {
|
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|
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/** @type {View[]} */
|
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root.visit((view) => {
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if (view.name == name) {
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descendants.push(view);
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return descendants;
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}
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|
/**
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*
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|
package/package.json
CHANGED
|
@@ -7,7 +7,7 @@
|
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|
7
7
|
},
|
|
8
8
|
"contributors": [],
|
|
9
9
|
"license": "MIT",
|
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|
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"version": "0.
|
|
10
|
+
"version": "0.69.0",
|
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11
11
|
"jsdelivr": "dist/bundle/index.js",
|
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12
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"unpkg": "dist/bundle/index.js",
|
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13
|
"browser": "dist/bundle/index.js",
|
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@@ -30,7 +30,7 @@
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"build": "rm -rf dist && mkdir -p dist && node scripts/build.mjs && vite build && npm run build:schema && npm run build:typings",
|
|
31
31
|
"prepublishOnly": "npm run build",
|
|
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32
|
"test:tsc": "tsc -p tsconfig.json --noEmit",
|
|
33
|
-
"build:schema": "mkdir -p dist && ts-json-schema-generator --path 'src/spec/*.ts' --type
|
|
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|
+
"build:schema": "mkdir -p dist && ts-json-schema-generator --path 'src/spec/*.ts' --type CoreRootSpec > dist/schema.json",
|
|
34
34
|
"build:typings": "tsc -p tsconfig.json --declaration --emitDeclarationOnly --declarationMap --outDir dist/src",
|
|
35
35
|
"prepack": "node scripts/prepack.mjs",
|
|
36
36
|
"postpack": "node scripts/postpack.mjs"
|
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@@ -53,7 +53,7 @@
|
|
|
53
53
|
"d3-ease": "^3.0.1",
|
|
54
54
|
"d3-format": "^3.1.0",
|
|
55
55
|
"events": "^3.3.0",
|
|
56
|
-
"flatqueue": "^
|
|
56
|
+
"flatqueue": "^3.0.0",
|
|
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57
|
"generic-filehandle2": "^2.0.14",
|
|
58
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|
"gff-nostream": "^2.0.0",
|
|
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59
|
"internmap": "^2.0.3",
|
|
@@ -67,5 +67,5 @@
|
|
|
67
67
|
"devDependencies": {
|
|
68
68
|
"@types/long": "^4.0.1"
|
|
69
69
|
},
|
|
70
|
-
"gitHead": "
|
|
70
|
+
"gitHead": "bfb9bd98ceb875f90a458b876208b15b6c12c9f3"
|
|
71
71
|
}
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
{"version":3,"file":"scaleDomainAggregator.d.ts","sourceRoot":"","sources":["../../../src/scales/scaleDomainAggregator.js"],"names":[],"mappings":"AAMA;;;;;GAKG;AAEH;IAgBI;;;;;;OAMG;IACH,0EALG;QAAkD,UAAU,EAApD,MAAM,GAAG,CAAC,qBAAqB,CAAC;QACiB,OAAO,EAAxD,MAAM,OAAO,oBAAoB,EAAE,IAAI;QACf,cAAc,EAAtC,MAAM,MAAM,EAAE;QACgD,mBAAmB,EAAjF,CAAC,QAAQ,EAAE,YAAY,GAAG,aAAa,KAAK,MAAM,EAAE;KAC9D,EAMA;IAED;;OAEG;IACH,6BAFa,GAAG,EAAE,CAIjB;IAED,+BAEC;IAED;;;;;OAKG;IACH,iDAHW,OAAO,GACL,GAAG,EAAE,CAYjB;IAED;;;;OAIG;IACH,uBAFY,WAAW,CAOtB;IAED;;;;OAIG;IACH,iBAFY,WAAW,GAAG,SAAS,CAIlC;IAED;;;;OAIG;IACH,4BAJW,OAAO,qBAAqB,EAAE,SAAS,wBACvC,OAAO,GACL,OAAO,CAgBnB;;CACJ;0BA1GY,OAAO,yBAAyB,EAAE,WAAW;4BAC7C,OAAO,kBAAkB,EAAE,aAAa;2BACxC,OAAO,kBAAkB,EAAE,YAAY;oCACvC,OAAO,sBAAsB,EAAE,qBAAqB"}
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
{"version":3,"file":"scaleDomainAggregator.test.d.ts","sourceRoot":"","sources":["../../../src/scales/scaleDomainAggregator.test.js"],"names":[],"mappings":""}
|
|
@@ -1,197 +0,0 @@
|
|
|
1
|
-
import { Data } from "./data.js";
|
|
2
|
-
import { Align, FontStyle, FontWeight } from "./font.js";
|
|
3
|
-
import { Scale } from "./scale.js";
|
|
4
|
-
import { LayerSpec, UnitSpec, ViewSpecBase, ViewBackground } from "./view.js";
|
|
5
|
-
|
|
6
|
-
// TODO: Figure out how this could be moved to the app package and excluded
|
|
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|
-
// from the core package.
|
|
8
|
-
|
|
9
|
-
/**
|
|
10
|
-
* A view specification for a SampleView.
|
|
11
|
-
* This is only functional in the GenomeSpy app.
|
|
12
|
-
*/
|
|
13
|
-
export interface SampleSpec extends ViewSpecBase {
|
|
14
|
-
/**
|
|
15
|
-
* Sample metadata definition.
|
|
16
|
-
* If the object is empty, the sample identifiers will be inferred from the data.
|
|
17
|
-
*/
|
|
18
|
-
samples: SampleDef;
|
|
19
|
-
|
|
20
|
-
/**
|
|
21
|
-
* An object defining the view background and outline. The background is
|
|
22
|
-
* repeated for each group.
|
|
23
|
-
*/
|
|
24
|
-
view?: ViewBackground;
|
|
25
|
-
/**
|
|
26
|
-
* The view specification to be repeated for each sample.
|
|
27
|
-
*/
|
|
28
|
-
spec: LayerSpec | UnitSpec;
|
|
29
|
-
|
|
30
|
-
stickySummaries?: boolean;
|
|
31
|
-
}
|
|
32
|
-
|
|
33
|
-
export type SampleAttributeType = "nominal" | "ordinal" | "quantitative";
|
|
34
|
-
|
|
35
|
-
export interface SampleAttributeDef {
|
|
36
|
-
/**
|
|
37
|
-
* The attribute type. One of `"nominal"`, `"ordinal"`, or `"quantitative"`.
|
|
38
|
-
*/
|
|
39
|
-
type?: SampleAttributeType;
|
|
40
|
-
|
|
41
|
-
/**
|
|
42
|
-
* Scale definition for the (default) color channel
|
|
43
|
-
*/
|
|
44
|
-
scale?: Scale;
|
|
45
|
-
|
|
46
|
-
/**
|
|
47
|
-
* An optional scale definition for mapping the attribute to
|
|
48
|
-
* the width of a metadata rectangle.
|
|
49
|
-
*/
|
|
50
|
-
barScale?: Scale;
|
|
51
|
-
|
|
52
|
-
/**
|
|
53
|
-
* Width of the column in pixels.
|
|
54
|
-
*/
|
|
55
|
-
width?: number;
|
|
56
|
-
|
|
57
|
-
/**
|
|
58
|
-
* Whether the attribute is visible by default.
|
|
59
|
-
*/
|
|
60
|
-
visible?: boolean;
|
|
61
|
-
|
|
62
|
-
/**
|
|
63
|
-
* The title of the attribute. Defaults to attribute name.
|
|
64
|
-
*/
|
|
65
|
-
title?: string;
|
|
66
|
-
}
|
|
67
|
-
|
|
68
|
-
export interface SampleDef {
|
|
69
|
-
/**
|
|
70
|
-
* Optional metadata about the samples.
|
|
71
|
-
*/
|
|
72
|
-
data?: Data;
|
|
73
|
-
|
|
74
|
-
/**
|
|
75
|
-
* If attributes form a hierarchy, specify the separator character to
|
|
76
|
-
* split the attribute names into paths.
|
|
77
|
-
*/
|
|
78
|
-
attributeGroupSeparator?: string;
|
|
79
|
-
|
|
80
|
-
/**
|
|
81
|
-
* Explicitly specify the sample attributes.
|
|
82
|
-
*/
|
|
83
|
-
attributes?: Record<string, SampleAttributeDef>;
|
|
84
|
-
|
|
85
|
-
/**
|
|
86
|
-
* Text in the label title
|
|
87
|
-
*
|
|
88
|
-
* **Default:** `"Sample name"`
|
|
89
|
-
*/
|
|
90
|
-
labelTitleText?: string;
|
|
91
|
-
|
|
92
|
-
/**
|
|
93
|
-
* How much space in pixels to reserve for the labels.
|
|
94
|
-
*
|
|
95
|
-
* **Default:** `140`
|
|
96
|
-
*/
|
|
97
|
-
labelLength?: number;
|
|
98
|
-
|
|
99
|
-
/**
|
|
100
|
-
* The font typeface. GenomeSpy uses [SDF](https://github.com/Chlumsky/msdfgen)
|
|
101
|
-
* versions of [Google Fonts](https://fonts.google.com/). Check their
|
|
102
|
-
* availability at the [A-Frame
|
|
103
|
-
* Fonts](https://github.com/etiennepinchon/aframe-fonts/tree/master/fonts)
|
|
104
|
-
* repository. System fonts are **not** supported.
|
|
105
|
-
*
|
|
106
|
-
* **Default value:** `"Lato"`
|
|
107
|
-
*/
|
|
108
|
-
labelFont?: string;
|
|
109
|
-
|
|
110
|
-
/**
|
|
111
|
-
* The font style. Valid values: `"normal"` and `"italic"`.
|
|
112
|
-
*
|
|
113
|
-
* **Default value:** `"normal"`
|
|
114
|
-
*/
|
|
115
|
-
labelFontStyle?: FontStyle;
|
|
116
|
-
|
|
117
|
-
/**
|
|
118
|
-
* The font weight. The following strings and numbers are valid values:
|
|
119
|
-
* `"thin"` (`100`), `"light"` (`300`), `"regular"` (`400`),
|
|
120
|
-
* `"normal"` (`400`), `"medium"` (`500`), `"bold"` (`700`),
|
|
121
|
-
* `"black"` (`900`)
|
|
122
|
-
*
|
|
123
|
-
* **Default value:** `"regular"`
|
|
124
|
-
*/
|
|
125
|
-
labelFontWeight?: FontWeight;
|
|
126
|
-
|
|
127
|
-
/**
|
|
128
|
-
* The font size in pixels.
|
|
129
|
-
*
|
|
130
|
-
* **Default value:** `11`
|
|
131
|
-
*/
|
|
132
|
-
labelFontSize?: number;
|
|
133
|
-
|
|
134
|
-
/**
|
|
135
|
-
* The horizontal alignment of the text. One of `"left"`, `"center"`, or `"right"`.
|
|
136
|
-
*
|
|
137
|
-
* **Default value:** `"left"`
|
|
138
|
-
*/
|
|
139
|
-
labelAlign?: Align;
|
|
140
|
-
|
|
141
|
-
/**
|
|
142
|
-
* Default size (width) of the metadata attribute columns.
|
|
143
|
-
* Can be configured per attribute using the `attributes` property.
|
|
144
|
-
*
|
|
145
|
-
* **Default value:** `10`
|
|
146
|
-
*/
|
|
147
|
-
attributeSize?: number;
|
|
148
|
-
|
|
149
|
-
/**
|
|
150
|
-
* The font typeface. GenomeSpy uses [SDF](https://github.com/Chlumsky/msdfgen)
|
|
151
|
-
* versions of [Google Fonts](https://fonts.google.com/). Check their
|
|
152
|
-
* availability at the [A-Frame
|
|
153
|
-
* Fonts](https://github.com/etiennepinchon/aframe-fonts/tree/master/fonts)
|
|
154
|
-
* repository. System fonts are **not** supported.
|
|
155
|
-
*
|
|
156
|
-
* **Default value:** `"Lato"`
|
|
157
|
-
*/
|
|
158
|
-
attributeLabelFont?: string;
|
|
159
|
-
|
|
160
|
-
/**
|
|
161
|
-
* The font style. Valid values: `"normal"` and `"italic"`.
|
|
162
|
-
*
|
|
163
|
-
* **Default value:** `"normal"`
|
|
164
|
-
*/
|
|
165
|
-
attributeLabelFontStyle?: FontStyle;
|
|
166
|
-
|
|
167
|
-
/**
|
|
168
|
-
* The font weight. The following strings and numbers are valid values:
|
|
169
|
-
* `"thin"` (`100`), `"light"` (`300`), `"regular"` (`400`),
|
|
170
|
-
* `"normal"` (`400`), `"medium"` (`500`), `"bold"` (`700`),
|
|
171
|
-
* `"black"` (`900`)
|
|
172
|
-
*
|
|
173
|
-
* **Default value:** `"regular"`
|
|
174
|
-
*/
|
|
175
|
-
attributeLabelFontWeight?: FontWeight;
|
|
176
|
-
|
|
177
|
-
/**
|
|
178
|
-
* The font size in pixels.
|
|
179
|
-
*
|
|
180
|
-
* **Default value:** `11`
|
|
181
|
-
*/
|
|
182
|
-
attributeLabelFontSize?: number;
|
|
183
|
-
|
|
184
|
-
/**
|
|
185
|
-
* Angle to be added to the default label angle (-90).
|
|
186
|
-
*
|
|
187
|
-
* **Default value:** `0`
|
|
188
|
-
*/
|
|
189
|
-
attributeLabelAngle?: number;
|
|
190
|
-
|
|
191
|
-
/**
|
|
192
|
-
* Spacing between attribute columns in pixels.
|
|
193
|
-
*
|
|
194
|
-
* **Default value:** `1`
|
|
195
|
-
*/
|
|
196
|
-
attributeSpacing?: number;
|
|
197
|
-
}
|
|
@@ -1,149 +0,0 @@
|
|
|
1
|
-
/**
|
|
2
|
-
* @param {any} x
|
|
3
|
-
* @returns {x is import("../spec/parameter.js").ExprRef}
|
|
4
|
-
*/
|
|
5
|
-
export function isExprRef(x: any): x is import("../spec/parameter.js").ExprRef;
|
|
6
|
-
/**
|
|
7
|
-
* Removes ExprRef from the type and checks that the value is not an ExprRef.
|
|
8
|
-
* This is designed to be used with `activateExprRefProps`.
|
|
9
|
-
*
|
|
10
|
-
* @param {T | import("../spec/parameter.js").ExprRef} x
|
|
11
|
-
* @template T
|
|
12
|
-
* @returns {T}
|
|
13
|
-
*/
|
|
14
|
-
export function withoutExprRef<T>(x: T | import("../spec/parameter.js").ExprRef): T;
|
|
15
|
-
/**
|
|
16
|
-
* @param {Parameter} param
|
|
17
|
-
* @returns {param is import("../spec/parameter.js").VariableParameter}
|
|
18
|
-
*/
|
|
19
|
-
export function isVariableParameter(param: import("../spec/parameter.js").Parameter): param is import("../spec/parameter.js").VariableParameter;
|
|
20
|
-
/**
|
|
21
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* expressions (upstream parameters) change.
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*
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export function activateExprRefProps<T extends Record<string, any | import("../spec/parameter.js").ExprRef>>(paramMediator: ParamMediator, props: T, listener?: (props: (keyof T)[]) => void): T;
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export function validateParameterName(name: string): string;
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export function makeConstantExprRef(value: any): ExprRefFunction;
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* A class that manages parameters and expressions.
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* Supports nesting and scoped parameters.
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*
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*
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* @typedef {import("../utils/expression.js").ExpressionFunction & { addListener: (listener: () => void) => void, removeListener: (listener: () => void) => void, invalidate: () => void, identifier: () => string}} ExprRefFunction
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*/
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export default class ParamMediator {
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/**
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*/
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constructor(parentFinder?: () => ParamMediator);
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/**
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* @type {Map<string, Set<() => void>>}
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* @protected
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*/
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protected paramListeners: Map<string, Set<() => void>>;
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/**
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* @param {Parameter} param
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* @returns {ParameterSetter}
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*/
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registerParam(param: import("../spec/parameter.js").Parameter): (value: any) => void;
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*
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* @param {string} paramName
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* @param {T} initialValue
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* @param {boolean} [passive] If true, the setter will not notify listeners when the value changes.
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* @returns {(value: T) => void}
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* @template T
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*/
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allocateSetter<T>(paramName: string, initialValue: T, passive?: boolean): (value: T) => void;
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/**
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* Gets an existing setter for a parameter. Throws if the setter is not found.
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* @param {string} paramName
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*/
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getSetter(paramName: string): (value: any) => void;
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/**
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* Get the value of a parameter from this mediator.
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* @param {string} paramName
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*/
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getValue(paramName: string): any;
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/**
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* Get the value of a parameter from this mediator or the ancestors.
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* @param {string} paramName
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*/
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findValue(paramName: string): any;
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/**
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* Returns configs for all parameters that have been registered using `registerParam`.
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*/
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get paramConfigs(): ReadonlyMap<string, import("../spec/parameter.js").Parameter>;
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/**
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*
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* @param {string} paramName
|
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* @returns {ParamMediator}
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*/
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|
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findMediatorForParam(paramName: string): ParamMediator;
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|
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/**
|
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|
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* Parse expr and return a function that returns the value of the parameter.
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|
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*
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|
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|
-
* @param {string} expr
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|
119
|
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*/
|
|
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|
-
createExpression(expr: string): ExprRefFunction;
|
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|
-
/**
|
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122
|
-
* A convenience method for evaluating an expression.
|
|
123
|
-
*
|
|
124
|
-
* @param {string} expr
|
|
125
|
-
*/
|
|
126
|
-
evaluateAndGet(expr: string): any;
|
|
127
|
-
/**
|
|
128
|
-
* Returns true if this ParamMediator has any parameters that are point selections.
|
|
129
|
-
* Point selections necessitate the use of uniqueIds in the data.
|
|
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|
-
*
|
|
131
|
-
* @returns {boolean}
|
|
132
|
-
*/
|
|
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|
-
hasPointSelections(): boolean;
|
|
134
|
-
#private;
|
|
135
|
-
}
|
|
136
|
-
/**
|
|
137
|
-
* A class that manages parameters and expressions.
|
|
138
|
-
* Supports nesting and scoped parameters.
|
|
139
|
-
*
|
|
140
|
-
* TODO: The proposed JavaScript signals may provide a better way to implement this.
|
|
141
|
-
* https://github.com/proposal-signals/proposal-signals
|
|
142
|
-
*/
|
|
143
|
-
export type ExprRefFunction = import("../utils/expression.js").ExpressionFunction & {
|
|
144
|
-
addListener: (listener: () => void) => void;
|
|
145
|
-
removeListener: (listener: () => void) => void;
|
|
146
|
-
invalidate: () => void;
|
|
147
|
-
identifier: () => string;
|
|
148
|
-
};
|
|
149
|
-
//# sourceMappingURL=paramMediator.d.ts.map
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
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|