@genome-spy/core 0.67.0 → 0.68.0

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Files changed (172) hide show
  1. package/dist/bundle/index.es.js +7641 -6313
  2. package/dist/bundle/index.js +115 -134
  3. package/dist/schema.json +534 -132
  4. package/dist/src/data/collector.d.ts +20 -0
  5. package/dist/src/data/collector.d.ts.map +1 -1
  6. package/dist/src/data/collector.js +148 -0
  7. package/dist/src/data/dataFlow.d.ts +6 -0
  8. package/dist/src/data/dataFlow.d.ts.map +1 -1
  9. package/dist/src/data/dataFlow.js +10 -0
  10. package/dist/src/data/flowInit.d.ts.map +1 -1
  11. package/dist/src/data/flowInit.js +2 -3
  12. package/dist/src/data/flowNode.d.ts +8 -0
  13. package/dist/src/data/flowNode.d.ts.map +1 -1
  14. package/dist/src/data/flowNode.js +18 -0
  15. package/dist/src/data/keyIndex.d.ts +18 -0
  16. package/dist/src/data/keyIndex.d.ts.map +1 -0
  17. package/dist/src/data/keyIndex.js +241 -0
  18. package/dist/src/data/keyIndex.test.d.ts +2 -0
  19. package/dist/src/data/keyIndex.test.d.ts.map +1 -0
  20. package/dist/src/data/sources/dataSource.d.ts.map +1 -1
  21. package/dist/src/data/sources/dataSource.js +5 -1
  22. package/dist/src/data/sources/dataSourceFactory.d.ts +14 -12
  23. package/dist/src/data/sources/dataSourceFactory.d.ts.map +1 -1
  24. package/dist/src/data/sources/dataSourceFactory.js +52 -16
  25. package/dist/src/data/sources/lazy/mockLazySource.d.ts +29 -0
  26. package/dist/src/data/sources/lazy/mockLazySource.d.ts.map +1 -0
  27. package/dist/src/data/sources/lazy/mockLazySource.js +44 -0
  28. package/dist/src/data/sources/lazy/singleAxisLazySource.d.ts +22 -1
  29. package/dist/src/data/sources/lazy/singleAxisLazySource.d.ts.map +1 -1
  30. package/dist/src/data/sources/lazy/singleAxisLazySource.js +34 -2
  31. package/dist/src/data/sources/lazy/singleAxisWindowedSource.d.ts.map +1 -1
  32. package/dist/src/data/sources/lazy/singleAxisWindowedSource.js +15 -0
  33. package/dist/src/data/sources/lazy/tabixSource.d.ts.map +1 -1
  34. package/dist/src/data/sources/lazy/tabixSource.js +15 -5
  35. package/dist/src/data/transforms/stack.d.ts.map +1 -1
  36. package/dist/src/data/transforms/stack.js +1 -0
  37. package/dist/src/encoder/accessor.d.ts +43 -0
  38. package/dist/src/encoder/accessor.d.ts.map +1 -1
  39. package/dist/src/encoder/accessor.js +164 -0
  40. package/dist/src/encoder/encoder.d.ts +11 -2
  41. package/dist/src/encoder/encoder.d.ts.map +1 -1
  42. package/dist/src/encoder/encoder.js +24 -4
  43. package/dist/src/encoder/metadataChannels.d.ts +15 -0
  44. package/dist/src/encoder/metadataChannels.d.ts.map +1 -0
  45. package/dist/src/encoder/metadataChannels.js +65 -0
  46. package/dist/src/encoder/metadataChannels.test.d.ts +2 -0
  47. package/dist/src/encoder/metadataChannels.test.d.ts.map +1 -0
  48. package/dist/src/genome/scaleLocus.d.ts.map +1 -1
  49. package/dist/src/genome/scaleLocus.js +14 -1
  50. package/dist/src/genomeSpy/containerUi.d.ts +0 -1
  51. package/dist/src/genomeSpy/containerUi.d.ts.map +1 -1
  52. package/dist/src/genomeSpy/containerUi.js +0 -14
  53. package/dist/src/genomeSpy/loadingIndicatorManager.d.ts +3 -7
  54. package/dist/src/genomeSpy/loadingIndicatorManager.d.ts.map +1 -1
  55. package/dist/src/genomeSpy/loadingIndicatorManager.js +68 -20
  56. package/dist/src/genomeSpy/loadingStatusRegistry.d.ts +52 -0
  57. package/dist/src/genomeSpy/loadingStatusRegistry.d.ts.map +1 -0
  58. package/dist/src/genomeSpy/loadingStatusRegistry.js +86 -0
  59. package/dist/src/genomeSpy/viewContextFactory.d.ts.map +1 -1
  60. package/dist/src/genomeSpy/viewContextFactory.js +0 -1
  61. package/dist/src/genomeSpy/viewDataInit.d.ts.map +1 -1
  62. package/dist/src/genomeSpy/viewDataInit.js +56 -11
  63. package/dist/src/genomeSpy.d.ts +0 -2
  64. package/dist/src/genomeSpy.d.ts.map +1 -1
  65. package/dist/src/genomeSpy.js +46 -26
  66. package/dist/src/marks/mark.d.ts.map +1 -1
  67. package/dist/src/marks/mark.js +18 -11
  68. package/dist/src/marks/markUtils.js +1 -1
  69. package/dist/src/scale/scale.d.ts +6 -1
  70. package/dist/src/scale/scale.d.ts.map +1 -1
  71. package/dist/src/scale/scale.js +83 -23
  72. package/dist/src/scales/axisResolution.d.ts.map +1 -1
  73. package/dist/src/scales/axisResolution.js +10 -0
  74. package/dist/src/scales/{scaleDomainAggregator.d.ts → domainPlanner.d.ts} +6 -3
  75. package/dist/src/scales/domainPlanner.d.ts.map +1 -0
  76. package/dist/src/scales/{scaleDomainAggregator.js → domainPlanner.js} +128 -10
  77. package/dist/src/scales/domainPlanner.test.d.ts +2 -0
  78. package/dist/src/scales/domainPlanner.test.d.ts.map +1 -0
  79. package/dist/src/scales/scaleInteractionController.d.ts +6 -0
  80. package/dist/src/scales/scaleInteractionController.d.ts.map +1 -1
  81. package/dist/src/scales/scaleInteractionController.js +41 -3
  82. package/dist/src/scales/scaleResolution.d.ts +19 -17
  83. package/dist/src/scales/scaleResolution.d.ts.map +1 -1
  84. package/dist/src/scales/scaleResolution.js +181 -70
  85. package/dist/src/scales/scaleResolution.test.d.ts.map +1 -1
  86. package/dist/src/selection/selection.d.ts +21 -0
  87. package/dist/src/selection/selection.d.ts.map +1 -1
  88. package/dist/src/selection/selection.js +82 -0
  89. package/dist/src/spec/channel.d.ts +52 -15
  90. package/dist/src/spec/data.d.ts +4 -0
  91. package/dist/src/spec/parameter.d.ts +16 -11
  92. package/dist/src/spec/testing.d.ts +12 -0
  93. package/dist/src/spec/testing.d.ts.map +1 -0
  94. package/dist/src/spec/testing.js +20 -0
  95. package/dist/src/spec/view.d.ts +45 -10
  96. package/dist/src/styles/genome-spy.css +3 -31
  97. package/dist/src/styles/genome-spy.css.d.ts +1 -1
  98. package/dist/src/styles/genome-spy.css.d.ts.map +1 -1
  99. package/dist/src/styles/genome-spy.css.js +0 -29
  100. package/dist/src/types/encoder.d.ts +37 -2
  101. package/dist/src/types/rendering.d.ts +4 -3
  102. package/dist/src/types/viewContext.d.ts +0 -14
  103. package/dist/src/utils/throttle.d.ts +4 -1
  104. package/dist/src/utils/throttle.d.ts.map +1 -1
  105. package/dist/src/utils/throttle.js +54 -23
  106. package/dist/src/utils/throttle.test.d.ts +2 -0
  107. package/dist/src/utils/throttle.test.d.ts.map +1 -0
  108. package/dist/src/utils/transition.d.ts +21 -0
  109. package/dist/src/utils/transition.d.ts.map +1 -1
  110. package/dist/src/utils/transition.js +28 -0
  111. package/dist/src/utils/ui/tooltip.d.ts.map +1 -1
  112. package/dist/src/utils/ui/tooltip.js +7 -1
  113. package/dist/src/utils/ui/tooltip.test.d.ts +2 -0
  114. package/dist/src/utils/ui/tooltip.test.d.ts.map +1 -0
  115. package/dist/src/view/axisGridView.d.ts.map +1 -1
  116. package/dist/src/view/axisGridView.js +22 -5
  117. package/dist/src/view/axisView.d.ts.map +1 -1
  118. package/dist/src/view/axisView.js +20 -5
  119. package/dist/src/view/concatView.js +3 -3
  120. package/dist/src/view/containerMutationHelper.js +1 -1
  121. package/dist/src/view/containerView.d.ts +9 -5
  122. package/dist/src/view/containerView.d.ts.map +1 -1
  123. package/dist/src/view/containerView.js +34 -9
  124. package/dist/src/view/dataReadiness.d.ts +46 -0
  125. package/dist/src/view/dataReadiness.d.ts.map +1 -0
  126. package/dist/src/view/dataReadiness.js +267 -0
  127. package/dist/src/view/dataReadiness.test.d.ts +2 -0
  128. package/dist/src/view/dataReadiness.test.d.ts.map +1 -0
  129. package/dist/src/view/facetView.d.ts.map +1 -1
  130. package/dist/src/view/facetView.js +7 -5
  131. package/dist/src/view/flowBuilder.d.ts.map +1 -1
  132. package/dist/src/view/flowBuilder.js +5 -1
  133. package/dist/src/view/gridView/gridChild.d.ts.map +1 -1
  134. package/dist/src/view/gridView/gridChild.js +8 -0
  135. package/dist/src/view/gridView/gridView.d.ts.map +1 -1
  136. package/dist/src/view/gridView/gridView.js +119 -2
  137. package/dist/src/view/gridView/scrollbar.d.ts.map +1 -1
  138. package/dist/src/view/gridView/scrollbar.js +3 -0
  139. package/dist/src/view/gridView/selectionRect.d.ts.map +1 -1
  140. package/dist/src/view/gridView/selectionRect.js +20 -5
  141. package/dist/src/view/gridView/separatorView.d.ts +51 -0
  142. package/dist/src/view/gridView/separatorView.d.ts.map +1 -0
  143. package/dist/src/view/gridView/separatorView.js +275 -0
  144. package/dist/src/view/layerView.js +3 -3
  145. package/dist/src/view/layout/flexLayout.d.ts +0 -30
  146. package/dist/src/view/layout/flexLayout.d.ts.map +1 -1
  147. package/dist/src/view/layout/flexLayout.js +0 -86
  148. package/dist/src/view/paramMediator.d.ts +19 -0
  149. package/dist/src/view/paramMediator.d.ts.map +1 -1
  150. package/dist/src/view/paramMediator.js +86 -19
  151. package/dist/src/view/testUtils.d.ts.map +1 -1
  152. package/dist/src/view/testUtils.js +6 -1
  153. package/dist/src/view/unitView.d.ts +8 -13
  154. package/dist/src/view/unitView.d.ts.map +1 -1
  155. package/dist/src/view/unitView.js +110 -41
  156. package/dist/src/view/view.d.ts +22 -14
  157. package/dist/src/view/view.d.ts.map +1 -1
  158. package/dist/src/view/view.js +93 -9
  159. package/dist/src/view/viewFactory.d.ts.map +1 -1
  160. package/dist/src/view/viewFactory.js +20 -1
  161. package/dist/src/view/viewSelectors.d.ts +148 -0
  162. package/dist/src/view/viewSelectors.d.ts.map +1 -0
  163. package/dist/src/view/viewSelectors.js +773 -0
  164. package/dist/src/view/viewSelectors.test.d.ts +2 -0
  165. package/dist/src/view/viewSelectors.test.d.ts.map +1 -0
  166. package/dist/src/view/viewUtils.d.ts +0 -8
  167. package/dist/src/view/viewUtils.d.ts.map +1 -1
  168. package/dist/src/view/viewUtils.js +1 -21
  169. package/package.json +3 -3
  170. package/dist/src/scales/scaleDomainAggregator.d.ts.map +0 -1
  171. package/dist/src/scales/scaleDomainAggregator.test.d.ts +0 -2
  172. package/dist/src/scales/scaleDomainAggregator.test.d.ts.map +0 -1
@@ -0,0 +1,2 @@
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+ export {};
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+ //# sourceMappingURL=viewSelectors.test.d.ts.map
@@ -0,0 +1 @@
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+ {"version":3,"file":"viewSelectors.test.d.ts","sourceRoot":"","sources":["../../../src/view/viewSelectors.test.js"],"names":[],"mappings":""}
@@ -61,14 +61,6 @@ export function loadExternalViewSpec(spec: import("../spec/view.js").ImportSpec,
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  * @param {function(View, View[]):void} visitor
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  */
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  export function stackifyVisitor(visitor: (arg0: View, arg1: View[]) => void): import("./view.js").Visitor;
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- /**
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- * Finds the descendants having the given name. The root is included in the search.
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- *
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- * @param {View} root
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- * @param {string} name View name
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- * @returns {View[]}
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- */
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- export function findDescendantsByPath(root: View, name: string): View[];
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  /**
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  *
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  * @param {View} root
@@ -1 +1 @@
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- {"version":3,"file":"viewUtils.d.ts","sourceRoot":"","sources":["../../../src/view/viewUtils.js"],"names":[],"mappings":"AASA;;;;GAIG;AACH,qCAHW,OAAO,oBAAoB,EAAE,UAAU,GAAG,OAAO,iBAAiB,EAAE,YAAY,GAC9E,IAAI,IAAI,aAAa,CAIjC;AAED;;;;GAIG;AACH,oCAHW,OAAO,oBAAoB,EAAE,aAAa,GAAG,OAAO,iBAAiB,EAAE,YAAY,GACjF,IAAI,IAAI,YAAY,CAOhC;AAED;;;GAGG;AACH,+BAFW,IAAI,6EAMd;AAED;;;;GAIG;AACH,wCAFW,IAAI,UASd;AAED;;GAEG;AACH,kDAFW,IAAI,QAiBd;AAED;;;;;;;GAOG;AACH,4CAFW,IAAI,QAUd;AAED;;;;GAIG;AACH,0DAJW,OAAO,CAAC,OAAO,kBAAkB,EAAE,OAAO,CAAC,EAAE,mBAC7C,MAAM,OAAO,GACX,OAAO,CAAC,IAAI,CAAC,CAmBzB;AAED;;;GAGG;AACH,wCAFW,IAAI;UAGO,QAAQ;aAAW,OAAO,oBAAoB,EAAE,OAAO;WAAS,OAAO,oBAAoB,EAAE,KAAK;UAAQ,OAAO,oBAAoB,EAAE,IAAI;IAqBhK;AAED;;;;;GAKG;AACH,2CALW,OAAO,iBAAiB,EAAE,UAAU,WACpC,MAAM,eACN,OAAO,yBAAyB,EAAE,OAAO,GACvC,OAAO,CAAC,OAAO,iBAAiB,EAAE,QAAQ,CAAC,CAsCvD;AAED;;GAEG;AACH,yCAFW,CAAS,IAAI,EAAJ,IAAI,EAAE,IAAM,EAAN,IAAI,EAAE,KAAE,IAAI,+BAkBrC;AAED;;;;;;GAMG;AACH,4CAJW,IAAI,QACJ,MAAM,GACJ,IAAI,EAAE,CAalB;AAED;;;GAGG;AACH,0CAFW,IAAI,eAqBd;AAED;;GAEG;AACH,8CAFW,OAAO,WAAW,EAAE,OAAO;;;EAoBrC;iBA/Q4C,WAAW;qBAFnC,eAAe"}
1
+ {"version":3,"file":"viewUtils.d.ts","sourceRoot":"","sources":["../../../src/view/viewUtils.js"],"names":[],"mappings":"AASA;;;;GAIG;AACH,qCAHW,OAAO,oBAAoB,EAAE,UAAU,GAAG,OAAO,iBAAiB,EAAE,YAAY,GAC9E,IAAI,IAAI,aAAa,CAIjC;AAED;;;;GAIG;AACH,oCAHW,OAAO,oBAAoB,EAAE,aAAa,GAAG,OAAO,iBAAiB,EAAE,YAAY,GACjF,IAAI,IAAI,YAAY,CAOhC;AAED;;;GAGG;AACH,+BAFW,IAAI,6EAMd;AAED;;;;GAIG;AACH,wCAFW,IAAI,UASd;AAED;;GAEG;AACH,kDAFW,IAAI,QAiBd;AAED;;;;;;;GAOG;AACH,4CAFW,IAAI,QAUd;AAED;;;;GAIG;AACH,0DAJW,OAAO,CAAC,OAAO,kBAAkB,EAAE,OAAO,CAAC,EAAE,mBAC7C,MAAM,OAAO,GACX,OAAO,CAAC,IAAI,CAAC,CAmBzB;AAED;;;GAGG;AACH,wCAFW,IAAI;UAGO,QAAQ;aAAW,OAAO,oBAAoB,EAAE,OAAO;WAAS,OAAO,oBAAoB,EAAE,KAAK;UAAQ,OAAO,oBAAoB,EAAE,IAAI;IAqBhK;AAED;;;;;GAKG;AACH,2CALW,OAAO,iBAAiB,EAAE,UAAU,WACpC,MAAM,eACN,OAAO,yBAAyB,EAAE,OAAO,GACvC,OAAO,CAAC,OAAO,iBAAiB,EAAE,QAAQ,CAAC,CAsCvD;AAED;;GAEG;AACH,yCAFW,CAAS,IAAI,EAAJ,IAAI,EAAE,IAAM,EAAN,IAAI,EAAE,KAAE,IAAI,+BAkBrC;AAED;;;GAGG;AACH,0CAFW,IAAI,eAqBd;AAED;;GAEG;AACH,8CAFW,OAAO,WAAW,EAAE,OAAO;;;EAoBrC;iBA3P4C,WAAW;qBAFnC,eAAe"}
@@ -126,7 +126,7 @@ export function findEncodedFields(view) {
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  if (view instanceof UnitView) {
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  const encoding = view.getEncoding();
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  for (const [channel, def] of Object.entries(encoding)) {
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- if (isFieldDef(def) && "type" in def) {
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+ if (!Array.isArray(def) && isFieldDef(def) && "type" in def) {
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  fieldInfos.push({
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  view,
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  channel,
@@ -207,26 +207,6 @@ export function stackifyVisitor(visitor) {
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  return stackified;
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  }
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210
- /**
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- * Finds the descendants having the given name. The root is included in the search.
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- *
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- * @param {View} root
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- * @param {string} name View name
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- * @returns {View[]}
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- */
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- export function findDescendantsByPath(root, name) {
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- /** @type {View[]} */
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- const descendants = [];
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-
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- root.visit((view) => {
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- if (view.name == name) {
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- descendants.push(view);
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- }
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- });
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-
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- return descendants;
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- }
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-
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  /**
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  *
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  * @param {View} root
package/package.json CHANGED
@@ -7,7 +7,7 @@
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  },
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  "contributors": [],
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  "license": "MIT",
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- "version": "0.67.0",
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+ "version": "0.68.0",
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  "jsdelivr": "dist/bundle/index.js",
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  "unpkg": "dist/bundle/index.js",
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  "browser": "dist/bundle/index.js",
@@ -53,7 +53,7 @@
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  "d3-ease": "^3.0.1",
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  "d3-format": "^3.1.0",
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  "events": "^3.3.0",
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- "flatqueue": "^2.0.3",
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+ "flatqueue": "^3.0.0",
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  "generic-filehandle2": "^2.0.14",
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  "gff-nostream": "^2.0.0",
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  "internmap": "^2.0.3",
@@ -67,5 +67,5 @@
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  "devDependencies": {
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  "@types/long": "^4.0.1"
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  },
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- "gitHead": "d53259ccca6238261bbb49255a828bb7d4c575a0"
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+ "gitHead": "74e4d56c67c8aa0da1884b16ff29185b16d418c3"
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  }
@@ -1 +0,0 @@
1
- {"version":3,"file":"scaleDomainAggregator.d.ts","sourceRoot":"","sources":["../../../src/scales/scaleDomainAggregator.js"],"names":[],"mappings":"AAMA;;;;;GAKG;AAEH;IAgBI;;;;;;OAMG;IACH,0EALG;QAAkD,UAAU,EAApD,MAAM,GAAG,CAAC,qBAAqB,CAAC;QACiB,OAAO,EAAxD,MAAM,OAAO,oBAAoB,EAAE,IAAI;QACf,cAAc,EAAtC,MAAM,MAAM,EAAE;QACgD,mBAAmB,EAAjF,CAAC,QAAQ,EAAE,YAAY,GAAG,aAAa,KAAK,MAAM,EAAE;KAC9D,EAMA;IAED;;OAEG;IACH,6BAFa,GAAG,EAAE,CAIjB;IAED,+BAEC;IAED;;;;;OAKG;IACH,iDAHW,OAAO,GACL,GAAG,EAAE,CAYjB;IAED;;;;OAIG;IACH,uBAFY,WAAW,CAOtB;IAED;;;;OAIG;IACH,iBAFY,WAAW,GAAG,SAAS,CAIlC;IAED;;;;OAIG;IACH,4BAJW,OAAO,qBAAqB,EAAE,SAAS,wBACvC,OAAO,GACL,OAAO,CAgBnB;;CACJ;0BA1GY,OAAO,yBAAyB,EAAE,WAAW;4BAC7C,OAAO,kBAAkB,EAAE,aAAa;2BACxC,OAAO,kBAAkB,EAAE,YAAY;oCACvC,OAAO,sBAAsB,EAAE,qBAAqB"}
@@ -1,2 +0,0 @@
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- export {};
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- //# sourceMappingURL=scaleDomainAggregator.test.d.ts.map
@@ -1 +0,0 @@
1
- {"version":3,"file":"scaleDomainAggregator.test.d.ts","sourceRoot":"","sources":["../../../src/scales/scaleDomainAggregator.test.js"],"names":[],"mappings":""}