@genome-spy/core 0.67.0 → 0.68.0

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Files changed (172) hide show
  1. package/dist/bundle/index.es.js +7641 -6313
  2. package/dist/bundle/index.js +115 -134
  3. package/dist/schema.json +534 -132
  4. package/dist/src/data/collector.d.ts +20 -0
  5. package/dist/src/data/collector.d.ts.map +1 -1
  6. package/dist/src/data/collector.js +148 -0
  7. package/dist/src/data/dataFlow.d.ts +6 -0
  8. package/dist/src/data/dataFlow.d.ts.map +1 -1
  9. package/dist/src/data/dataFlow.js +10 -0
  10. package/dist/src/data/flowInit.d.ts.map +1 -1
  11. package/dist/src/data/flowInit.js +2 -3
  12. package/dist/src/data/flowNode.d.ts +8 -0
  13. package/dist/src/data/flowNode.d.ts.map +1 -1
  14. package/dist/src/data/flowNode.js +18 -0
  15. package/dist/src/data/keyIndex.d.ts +18 -0
  16. package/dist/src/data/keyIndex.d.ts.map +1 -0
  17. package/dist/src/data/keyIndex.js +241 -0
  18. package/dist/src/data/keyIndex.test.d.ts +2 -0
  19. package/dist/src/data/keyIndex.test.d.ts.map +1 -0
  20. package/dist/src/data/sources/dataSource.d.ts.map +1 -1
  21. package/dist/src/data/sources/dataSource.js +5 -1
  22. package/dist/src/data/sources/dataSourceFactory.d.ts +14 -12
  23. package/dist/src/data/sources/dataSourceFactory.d.ts.map +1 -1
  24. package/dist/src/data/sources/dataSourceFactory.js +52 -16
  25. package/dist/src/data/sources/lazy/mockLazySource.d.ts +29 -0
  26. package/dist/src/data/sources/lazy/mockLazySource.d.ts.map +1 -0
  27. package/dist/src/data/sources/lazy/mockLazySource.js +44 -0
  28. package/dist/src/data/sources/lazy/singleAxisLazySource.d.ts +22 -1
  29. package/dist/src/data/sources/lazy/singleAxisLazySource.d.ts.map +1 -1
  30. package/dist/src/data/sources/lazy/singleAxisLazySource.js +34 -2
  31. package/dist/src/data/sources/lazy/singleAxisWindowedSource.d.ts.map +1 -1
  32. package/dist/src/data/sources/lazy/singleAxisWindowedSource.js +15 -0
  33. package/dist/src/data/sources/lazy/tabixSource.d.ts.map +1 -1
  34. package/dist/src/data/sources/lazy/tabixSource.js +15 -5
  35. package/dist/src/data/transforms/stack.d.ts.map +1 -1
  36. package/dist/src/data/transforms/stack.js +1 -0
  37. package/dist/src/encoder/accessor.d.ts +43 -0
  38. package/dist/src/encoder/accessor.d.ts.map +1 -1
  39. package/dist/src/encoder/accessor.js +164 -0
  40. package/dist/src/encoder/encoder.d.ts +11 -2
  41. package/dist/src/encoder/encoder.d.ts.map +1 -1
  42. package/dist/src/encoder/encoder.js +24 -4
  43. package/dist/src/encoder/metadataChannels.d.ts +15 -0
  44. package/dist/src/encoder/metadataChannels.d.ts.map +1 -0
  45. package/dist/src/encoder/metadataChannels.js +65 -0
  46. package/dist/src/encoder/metadataChannels.test.d.ts +2 -0
  47. package/dist/src/encoder/metadataChannels.test.d.ts.map +1 -0
  48. package/dist/src/genome/scaleLocus.d.ts.map +1 -1
  49. package/dist/src/genome/scaleLocus.js +14 -1
  50. package/dist/src/genomeSpy/containerUi.d.ts +0 -1
  51. package/dist/src/genomeSpy/containerUi.d.ts.map +1 -1
  52. package/dist/src/genomeSpy/containerUi.js +0 -14
  53. package/dist/src/genomeSpy/loadingIndicatorManager.d.ts +3 -7
  54. package/dist/src/genomeSpy/loadingIndicatorManager.d.ts.map +1 -1
  55. package/dist/src/genomeSpy/loadingIndicatorManager.js +68 -20
  56. package/dist/src/genomeSpy/loadingStatusRegistry.d.ts +52 -0
  57. package/dist/src/genomeSpy/loadingStatusRegistry.d.ts.map +1 -0
  58. package/dist/src/genomeSpy/loadingStatusRegistry.js +86 -0
  59. package/dist/src/genomeSpy/viewContextFactory.d.ts.map +1 -1
  60. package/dist/src/genomeSpy/viewContextFactory.js +0 -1
  61. package/dist/src/genomeSpy/viewDataInit.d.ts.map +1 -1
  62. package/dist/src/genomeSpy/viewDataInit.js +56 -11
  63. package/dist/src/genomeSpy.d.ts +0 -2
  64. package/dist/src/genomeSpy.d.ts.map +1 -1
  65. package/dist/src/genomeSpy.js +46 -26
  66. package/dist/src/marks/mark.d.ts.map +1 -1
  67. package/dist/src/marks/mark.js +18 -11
  68. package/dist/src/marks/markUtils.js +1 -1
  69. package/dist/src/scale/scale.d.ts +6 -1
  70. package/dist/src/scale/scale.d.ts.map +1 -1
  71. package/dist/src/scale/scale.js +83 -23
  72. package/dist/src/scales/axisResolution.d.ts.map +1 -1
  73. package/dist/src/scales/axisResolution.js +10 -0
  74. package/dist/src/scales/{scaleDomainAggregator.d.ts → domainPlanner.d.ts} +6 -3
  75. package/dist/src/scales/domainPlanner.d.ts.map +1 -0
  76. package/dist/src/scales/{scaleDomainAggregator.js → domainPlanner.js} +128 -10
  77. package/dist/src/scales/domainPlanner.test.d.ts +2 -0
  78. package/dist/src/scales/domainPlanner.test.d.ts.map +1 -0
  79. package/dist/src/scales/scaleInteractionController.d.ts +6 -0
  80. package/dist/src/scales/scaleInteractionController.d.ts.map +1 -1
  81. package/dist/src/scales/scaleInteractionController.js +41 -3
  82. package/dist/src/scales/scaleResolution.d.ts +19 -17
  83. package/dist/src/scales/scaleResolution.d.ts.map +1 -1
  84. package/dist/src/scales/scaleResolution.js +181 -70
  85. package/dist/src/scales/scaleResolution.test.d.ts.map +1 -1
  86. package/dist/src/selection/selection.d.ts +21 -0
  87. package/dist/src/selection/selection.d.ts.map +1 -1
  88. package/dist/src/selection/selection.js +82 -0
  89. package/dist/src/spec/channel.d.ts +52 -15
  90. package/dist/src/spec/data.d.ts +4 -0
  91. package/dist/src/spec/parameter.d.ts +16 -11
  92. package/dist/src/spec/testing.d.ts +12 -0
  93. package/dist/src/spec/testing.d.ts.map +1 -0
  94. package/dist/src/spec/testing.js +20 -0
  95. package/dist/src/spec/view.d.ts +45 -10
  96. package/dist/src/styles/genome-spy.css +3 -31
  97. package/dist/src/styles/genome-spy.css.d.ts +1 -1
  98. package/dist/src/styles/genome-spy.css.d.ts.map +1 -1
  99. package/dist/src/styles/genome-spy.css.js +0 -29
  100. package/dist/src/types/encoder.d.ts +37 -2
  101. package/dist/src/types/rendering.d.ts +4 -3
  102. package/dist/src/types/viewContext.d.ts +0 -14
  103. package/dist/src/utils/throttle.d.ts +4 -1
  104. package/dist/src/utils/throttle.d.ts.map +1 -1
  105. package/dist/src/utils/throttle.js +54 -23
  106. package/dist/src/utils/throttle.test.d.ts +2 -0
  107. package/dist/src/utils/throttle.test.d.ts.map +1 -0
  108. package/dist/src/utils/transition.d.ts +21 -0
  109. package/dist/src/utils/transition.d.ts.map +1 -1
  110. package/dist/src/utils/transition.js +28 -0
  111. package/dist/src/utils/ui/tooltip.d.ts.map +1 -1
  112. package/dist/src/utils/ui/tooltip.js +7 -1
  113. package/dist/src/utils/ui/tooltip.test.d.ts +2 -0
  114. package/dist/src/utils/ui/tooltip.test.d.ts.map +1 -0
  115. package/dist/src/view/axisGridView.d.ts.map +1 -1
  116. package/dist/src/view/axisGridView.js +22 -5
  117. package/dist/src/view/axisView.d.ts.map +1 -1
  118. package/dist/src/view/axisView.js +20 -5
  119. package/dist/src/view/concatView.js +3 -3
  120. package/dist/src/view/containerMutationHelper.js +1 -1
  121. package/dist/src/view/containerView.d.ts +9 -5
  122. package/dist/src/view/containerView.d.ts.map +1 -1
  123. package/dist/src/view/containerView.js +34 -9
  124. package/dist/src/view/dataReadiness.d.ts +46 -0
  125. package/dist/src/view/dataReadiness.d.ts.map +1 -0
  126. package/dist/src/view/dataReadiness.js +267 -0
  127. package/dist/src/view/dataReadiness.test.d.ts +2 -0
  128. package/dist/src/view/dataReadiness.test.d.ts.map +1 -0
  129. package/dist/src/view/facetView.d.ts.map +1 -1
  130. package/dist/src/view/facetView.js +7 -5
  131. package/dist/src/view/flowBuilder.d.ts.map +1 -1
  132. package/dist/src/view/flowBuilder.js +5 -1
  133. package/dist/src/view/gridView/gridChild.d.ts.map +1 -1
  134. package/dist/src/view/gridView/gridChild.js +8 -0
  135. package/dist/src/view/gridView/gridView.d.ts.map +1 -1
  136. package/dist/src/view/gridView/gridView.js +119 -2
  137. package/dist/src/view/gridView/scrollbar.d.ts.map +1 -1
  138. package/dist/src/view/gridView/scrollbar.js +3 -0
  139. package/dist/src/view/gridView/selectionRect.d.ts.map +1 -1
  140. package/dist/src/view/gridView/selectionRect.js +20 -5
  141. package/dist/src/view/gridView/separatorView.d.ts +51 -0
  142. package/dist/src/view/gridView/separatorView.d.ts.map +1 -0
  143. package/dist/src/view/gridView/separatorView.js +275 -0
  144. package/dist/src/view/layerView.js +3 -3
  145. package/dist/src/view/layout/flexLayout.d.ts +0 -30
  146. package/dist/src/view/layout/flexLayout.d.ts.map +1 -1
  147. package/dist/src/view/layout/flexLayout.js +0 -86
  148. package/dist/src/view/paramMediator.d.ts +19 -0
  149. package/dist/src/view/paramMediator.d.ts.map +1 -1
  150. package/dist/src/view/paramMediator.js +86 -19
  151. package/dist/src/view/testUtils.d.ts.map +1 -1
  152. package/dist/src/view/testUtils.js +6 -1
  153. package/dist/src/view/unitView.d.ts +8 -13
  154. package/dist/src/view/unitView.d.ts.map +1 -1
  155. package/dist/src/view/unitView.js +110 -41
  156. package/dist/src/view/view.d.ts +22 -14
  157. package/dist/src/view/view.d.ts.map +1 -1
  158. package/dist/src/view/view.js +93 -9
  159. package/dist/src/view/viewFactory.d.ts.map +1 -1
  160. package/dist/src/view/viewFactory.js +20 -1
  161. package/dist/src/view/viewSelectors.d.ts +148 -0
  162. package/dist/src/view/viewSelectors.d.ts.map +1 -0
  163. package/dist/src/view/viewSelectors.js +773 -0
  164. package/dist/src/view/viewSelectors.test.d.ts +2 -0
  165. package/dist/src/view/viewSelectors.test.d.ts.map +1 -0
  166. package/dist/src/view/viewUtils.d.ts +0 -8
  167. package/dist/src/view/viewUtils.d.ts.map +1 -1
  168. package/dist/src/view/viewUtils.js +1 -21
  169. package/package.json +3 -3
  170. package/dist/src/scales/scaleDomainAggregator.d.ts.map +0 -1
  171. package/dist/src/scales/scaleDomainAggregator.test.d.ts +0 -2
  172. package/dist/src/scales/scaleDomainAggregator.test.d.ts.map +0 -1
@@ -0,0 +1,148 @@
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+ /**
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+ * Marks a view as the root of an import scope.
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+ *
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+ * @param {import("./view.js").default} view
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+ * @param {string | null} scopeName
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+ */
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+ export function registerImportInstance(view: import("./view.js").default, scopeName: string | null): void;
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+ /**
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+ * Returns import scope info for a view, if it is an import root.
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+ *
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+ * @param {import("./view.js").default} view
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+ * @returns {ImportScopeInfo | undefined}
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+ */
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+ export function getImportScopeInfo(view: import("./view.js").default): ImportScopeInfo | undefined;
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+ /**
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+ * Marks a view as non-addressable for selector resolution.
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+ *
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+ * @param {import("./view.js").default} view
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+ * @param {AddressableOptions} [options]
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+ */
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+ export function markViewAsNonAddressable(view: import("./view.js").default, options?: AddressableOptions): void;
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+ /**
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+ * Returns the import scope chain for a view, using named import instances.
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+ *
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+ * @param {import("./view.js").default} view
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+ * @returns {string[]}
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+ */
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+ export function getViewScopeChain(view: import("./view.js").default): string[];
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+ /**
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+ * Returns a view selector for a view with an explicit name.
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+ *
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+ * @param {import("./view.js").default} view
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+ * @returns {ViewSelector}
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+ */
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+ export function getViewSelector(view: import("./view.js").default): ViewSelector;
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+ /**
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+ * Returns a parameter selector for a parameter registered in a view.
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+ *
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+ * @param {import("./view.js").default} view
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+ * @param {string} paramName
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+ * @returns {ParamSelector}
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+ */
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+ export function getParamSelector(view: import("./view.js").default, paramName: string): ParamSelector;
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+ /**
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+ * Returns a stable key for a parameter selector.
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+ *
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+ * @param {ParamSelector} selector
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+ * @returns {string}
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+ */
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+ export function makeParamSelectorKey(selector: ParamSelector): string;
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+ /**
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+ * Enumerates views that can be addressed by selectors.
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+ *
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+ * @param {import("./view.js").default} root
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+ * @returns {import("./view.js").default[]}
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+ */
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+ export function getAddressableViews(root: import("./view.js").default): import("./view.js").default[];
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+ /**
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+ * Visits all addressable views in the hierarchy.
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+ *
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+ * @param {import("./view.js").default} root
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+ * @param {import("./view.js").Visitor} visitor
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+ */
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+ export function visitAddressableViews(root: import("./view.js").default, visitor: import("./view.js").Visitor): void;
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+ /**
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+ * Resolves a view selector to a unique view within the matching scope.
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+ *
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+ * @param {import("./view.js").default} root
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+ * @param {ViewSelector} selector
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+ * @returns {import("./view.js").default | undefined}
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+ */
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+ export function resolveViewSelector(root: import("./view.js").default, selector: ViewSelector): import("./view.js").default | undefined;
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+ /**
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+ * Resolves a parameter selector to a unique bookmarkable parameter.
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+ *
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+ * @param {import("./view.js").default} root
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+ * @param {ParamSelector} selector
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+ * @returns {ResolvedParam | undefined}
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+ */
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+ export function resolveParamSelector(root: import("./view.js").default, selector: ParamSelector): ResolvedParam | undefined;
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+ /**
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+ * Visits bookmarkable parameters in the view hierarchy.
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+ *
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+ * @param {import("./view.js").default} root
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+ * @param {(entry: BookmarkableParamEntry) => void} visitor
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+ */
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+ export function visitBookmarkableParams(root: import("./view.js").default, visitor: (entry: BookmarkableParamEntry) => void): void;
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+ /**
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+ * Returns bookmarkable parameters in the view hierarchy.
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+ *
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+ * @param {import("./view.js").default} root
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+ * @returns {BookmarkableParamEntry[]}
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+ */
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+ export function getBookmarkableParams(root: import("./view.js").default): BookmarkableParamEntry[];
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+ /**
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+ * Validates naming and scoping constraints for addressable views and parameters.
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+ *
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+ * @param {import("./view.js").default} root
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+ * @returns {SelectorValidationIssue[]}
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+ */
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+ export function validateSelectorConstraints(root: import("./view.js").default): SelectorValidationIssue[];
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+ /**
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+ * Selectors identify views and parameters in a way that stays stable when the
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+ * same template/import is instantiated multiple times. They combine a chain of
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+ * named import instances (scope) with an explicit view or parameter name so
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+ * bookmarkable state and visibility toggles do not rely on globally-unique
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+ * names or runtime-only nodes.
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+ */
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+ /**
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+ * @typedef {{ scope: string[], view: string }} ViewSelector
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+ * @typedef {{ scope: string[], param: string }} ParamSelector
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+ * @typedef {{ view: import("./view.js").default, param: import("../spec/parameter.js").Parameter, selector: ParamSelector }} BookmarkableParamEntry
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+ * @typedef {{ message: string, scope: string[] }} SelectorValidationIssue
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+ * @typedef {{ name: string | null }} ImportScopeInfo
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+ * @typedef {"exclude" | "excludeSubtree"} AddressableOverride
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+ * @typedef {{ skipSubtree?: boolean }} AddressableOptions
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+ * @typedef {{ view: import("./view.js").default, param: import("../spec/parameter.js").Parameter }} ResolvedParam
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+ */
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+ export const PARAM_SELECTOR_KEY_PREFIX: "p:";
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+ export type ViewSelector = {
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+ scope: string[];
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+ view: string;
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+ };
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+ export type ParamSelector = {
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+ scope: string[];
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+ param: string;
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+ };
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+ export type BookmarkableParamEntry = {
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+ view: import("./view.js").default;
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+ param: import("../spec/parameter.js").Parameter;
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+ selector: ParamSelector;
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+ };
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+ export type SelectorValidationIssue = {
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+ message: string;
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+ scope: string[];
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+ };
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+ export type ImportScopeInfo = {
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+ name: string | null;
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+ };
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+ export type AddressableOverride = "exclude" | "excludeSubtree";
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+ export type AddressableOptions = {
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+ skipSubtree?: boolean;
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+ };
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+ export type ResolvedParam = {
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+ view: import("./view.js").default;
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+ param: import("../spec/parameter.js").Parameter;
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+ };
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+ //# sourceMappingURL=viewSelectors.d.ts.map
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