@genome-spy/core 0.63.0 → 0.65.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (138) hide show
  1. package/dist/bundle/{index-CCJIjehY.js → AbortablePromiseCache-CcuMrnn7.js} +22 -91
  2. package/dist/bundle/browser-txUcLy2H.js +123 -0
  3. package/dist/bundle/index-BQpbYrv4.js +1712 -0
  4. package/dist/bundle/index-BhtHKLUo.js +73 -0
  5. package/dist/bundle/index-C0llXMqm.js +280 -0
  6. package/dist/bundle/index-CCe8rnZz.js +716 -0
  7. package/dist/bundle/index-CD7FLu9x.js +269 -0
  8. package/dist/bundle/{index-C08YCM2T.js → index-D-w7Mmt9.js} +246 -126
  9. package/dist/bundle/index-D74H8TTz.js +508 -0
  10. package/dist/bundle/index-DhcU-Gk-.js +1487 -0
  11. package/dist/bundle/index.es.js +5394 -4989
  12. package/dist/bundle/index.js +420 -362
  13. package/dist/bundle/inflate-DRgHi_KK.js +1050 -0
  14. package/dist/schema.json +93 -13
  15. package/dist/src/data/collector.d.ts +7 -2
  16. package/dist/src/data/collector.d.ts.map +1 -1
  17. package/dist/src/data/collector.js +13 -2
  18. package/dist/src/data/dataFlow.d.ts +20 -42
  19. package/dist/src/data/dataFlow.d.ts.map +1 -1
  20. package/dist/src/data/dataFlow.js +57 -80
  21. package/dist/src/data/dataFlow.test.js +35 -2
  22. package/dist/src/data/flowHandle.d.ts +15 -0
  23. package/dist/src/data/flowHandle.d.ts.map +1 -0
  24. package/dist/src/data/flowHandle.js +13 -0
  25. package/dist/src/data/flowInit.d.ts +85 -0
  26. package/dist/src/data/flowInit.d.ts.map +1 -0
  27. package/dist/src/data/flowInit.js +238 -0
  28. package/dist/src/data/flowInit.test.d.ts +2 -0
  29. package/dist/src/data/flowInit.test.d.ts.map +1 -0
  30. package/dist/src/data/flowInit.test.js +413 -0
  31. package/dist/src/data/flowOptimizer.d.ts +6 -4
  32. package/dist/src/data/flowOptimizer.d.ts.map +1 -1
  33. package/dist/src/data/flowOptimizer.js +29 -14
  34. package/dist/src/data/flowOptimizer.test.js +20 -15
  35. package/dist/src/data/sources/lazy/bamSource.js +1 -1
  36. package/dist/src/data/sources/lazy/bigBedSource.js +1 -1
  37. package/dist/src/data/sources/lazy/bigWigSource.js +1 -1
  38. package/dist/src/data/sources/lazy/gff3Source.d.ts +2 -6
  39. package/dist/src/data/sources/lazy/gff3Source.d.ts.map +1 -1
  40. package/dist/src/data/sources/lazy/gff3Source.js +4 -8
  41. package/dist/src/data/sources/lazy/indexedFastaSource.d.ts.map +1 -1
  42. package/dist/src/data/sources/lazy/indexedFastaSource.js +17 -17
  43. package/dist/src/data/sources/lazy/tabixSource.js +1 -1
  44. package/dist/src/genomeSpy.d.ts +1 -1
  45. package/dist/src/genomeSpy.d.ts.map +1 -1
  46. package/dist/src/genomeSpy.js +18 -61
  47. package/dist/src/gl/webGLHelper.d.ts.map +1 -1
  48. package/dist/src/gl/webGLHelper.js +8 -0
  49. package/dist/src/marks/link.fragment.glsl.js +1 -1
  50. package/dist/src/marks/link.vertex.glsl.js +1 -1
  51. package/dist/src/marks/mark.d.ts +1 -0
  52. package/dist/src/marks/mark.d.ts.map +1 -1
  53. package/dist/src/marks/mark.js +22 -1
  54. package/dist/src/marks/point.fragment.glsl.js +1 -1
  55. package/dist/src/marks/point.vertex.glsl.js +1 -1
  56. package/dist/src/marks/rect.fragment.glsl.js +1 -1
  57. package/dist/src/marks/rect.vertex.glsl.js +1 -1
  58. package/dist/src/marks/rule.fragment.glsl.js +1 -1
  59. package/dist/src/marks/rule.vertex.glsl.js +1 -1
  60. package/dist/src/marks/text.fragment.glsl.js +1 -1
  61. package/dist/src/marks/text.vertex.glsl.js +1 -1
  62. package/dist/src/selection/selection.d.ts +5 -0
  63. package/dist/src/selection/selection.d.ts.map +1 -1
  64. package/dist/src/selection/selection.js +43 -6
  65. package/dist/src/selection/selection.test.d.ts +2 -0
  66. package/dist/src/selection/selection.test.d.ts.map +1 -0
  67. package/dist/src/selection/selection.test.js +14 -0
  68. package/dist/src/spec/parameter.d.ts +28 -2
  69. package/dist/src/spec/sampleView.d.ts +3 -2
  70. package/dist/src/styles/{genome-spy.scss → genome-spy.css} +25 -21
  71. package/dist/src/styles/genome-spy.css.d.ts +1 -1
  72. package/dist/src/styles/genome-spy.css.d.ts.map +1 -1
  73. package/dist/src/styles/genome-spy.css.js +264 -195
  74. package/dist/src/styles/update.sh +14 -4
  75. package/dist/src/types/viewContext.d.ts +1 -1
  76. package/dist/src/utils/expression.d.ts +5 -0
  77. package/dist/src/utils/expression.d.ts.map +1 -1
  78. package/dist/src/utils/expression.js +37 -0
  79. package/dist/src/utils/interactionEvent.d.ts +18 -1
  80. package/dist/src/utils/interactionEvent.d.ts.map +1 -1
  81. package/dist/src/utils/interactionEvent.js +101 -1
  82. package/dist/src/utils/interactionEvent.test.d.ts +2 -0
  83. package/dist/src/utils/interactionEvent.test.d.ts.map +1 -0
  84. package/dist/src/utils/interactionEvent.test.js +35 -0
  85. package/dist/src/view/axisResolution.d.ts +5 -0
  86. package/dist/src/view/axisResolution.d.ts.map +1 -1
  87. package/dist/src/view/axisResolution.js +16 -1
  88. package/dist/src/view/facetView.d.ts +1 -1
  89. package/dist/src/view/facetView.d.ts.map +1 -1
  90. package/dist/src/view/facetView.js +1 -0
  91. package/dist/src/view/flowBuilder.d.ts +2 -2
  92. package/dist/src/view/flowBuilder.d.ts.map +1 -1
  93. package/dist/src/view/flowBuilder.js +21 -4
  94. package/dist/src/view/gridView/gridView.d.ts.map +1 -1
  95. package/dist/src/view/gridView/gridView.js +13 -0
  96. package/dist/src/view/gridView/selectionRect.d.ts +8 -4
  97. package/dist/src/view/gridView/selectionRect.d.ts.map +1 -1
  98. package/dist/src/view/gridView/selectionRect.js +28 -3
  99. package/dist/src/view/gridView/selectionRect.test.d.ts +2 -0
  100. package/dist/src/view/gridView/selectionRect.test.d.ts.map +1 -0
  101. package/dist/src/view/gridView/selectionRect.test.js +87 -0
  102. package/dist/src/view/paramMediator.d.ts +2 -1
  103. package/dist/src/view/paramMediator.d.ts.map +1 -1
  104. package/dist/src/view/paramMediator.js +13 -1
  105. package/dist/src/view/paramMediator.test.js +22 -0
  106. package/dist/src/view/scaleResolution.d.ts +5 -0
  107. package/dist/src/view/scaleResolution.d.ts.map +1 -1
  108. package/dist/src/view/scaleResolution.js +10 -0
  109. package/dist/src/view/testUtils.d.ts.map +1 -1
  110. package/dist/src/view/testUtils.js +16 -4
  111. package/dist/src/view/unitView.d.ts.map +1 -1
  112. package/dist/src/view/unitView.js +103 -10
  113. package/dist/src/view/view.d.ts +17 -1
  114. package/dist/src/view/view.d.ts.map +1 -1
  115. package/dist/src/view/view.js +57 -1
  116. package/dist/src/view/viewDispose.test.d.ts +2 -0
  117. package/dist/src/view/viewDispose.test.d.ts.map +1 -0
  118. package/dist/src/view/viewDispose.test.js +110 -0
  119. package/dist/src/view/viewUtils.d.ts +4 -4
  120. package/dist/src/view/viewUtils.d.ts.map +1 -1
  121. package/dist/src/view/viewUtils.js +19 -15
  122. package/dist/src/view/viewUtils.test.d.ts +2 -0
  123. package/dist/src/view/viewUtils.test.d.ts.map +1 -0
  124. package/dist/src/view/viewUtils.test.js +87 -0
  125. package/package.json +16 -16
  126. package/dist/bundle/__vite-browser-external-C--ziKoh.js +0 -8
  127. package/dist/bundle/_commonjsHelpers-DjF3Plf2.js +0 -26
  128. package/dist/bundle/index-5ajWdKly.js +0 -1319
  129. package/dist/bundle/index-B03-Om4z.js +0 -274
  130. package/dist/bundle/index-BftNdA0O.js +0 -27
  131. package/dist/bundle/index-Bg7C4Xat.js +0 -2750
  132. package/dist/bundle/index-C3QR8Lv6.js +0 -2131
  133. package/dist/bundle/index-DTcHjAHp.js +0 -505
  134. package/dist/bundle/index-DnIkxb0L.js +0 -1025
  135. package/dist/bundle/index-Ww3TAo6_.js +0 -71
  136. package/dist/bundle/index-g8iXgW0W.js +0 -651
  137. package/dist/bundle/long-B-FASCSo.js +0 -2387
  138. package/dist/bundle/remoteFile-BuaqFGWk.js +0 -94
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- function u(n) {
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- return (typeof n == "object" && n !== null && "message" in n ? n.message : `${n}`).replace(/\.$/, "");
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- }
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- class $ {
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- async getBufferFromResponse(e) {
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- const t = await e.arrayBuffer();
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- return d.Buffer.from(t);
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- }
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- constructor(e, t = {}) {
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- this.baseOverrides = {}, this.url = e;
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- const r = t.fetch || globalThis.fetch.bind(globalThis);
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- if (!r)
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- throw new TypeError("no fetch function supplied, and none found in global environment");
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- t.overrides && (this.baseOverrides = t.overrides), this.fetchImplementation = r;
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- }
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- async fetch(e, t) {
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- let r;
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- try {
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- r = await this.fetchImplementation(e, t);
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- } catch (s) {
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- if (`${s}`.includes("Failed to fetch")) {
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- console.warn(`generic-filehandle: refetching ${e} to attempt to work around chrome CORS header caching bug`);
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- try {
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- r = await this.fetchImplementation(e, {
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- ...t,
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- cache: "reload"
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- });
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- } catch (i) {
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- throw new Error(`${u(i)} fetching ${e}`, { cause: i });
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- }
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- } else
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- throw new Error(`${u(s)} fetching ${e}`, { cause: s });
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- }
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- return r;
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- }
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- async read(e, t = 0, r, s = 0, i = {}) {
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- const { headers: c = {}, signal: o, overrides: f = {} } = i;
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- r < 1 / 0 ? c.range = `bytes=${s}-${s + r}` : r === 1 / 0 && s !== 0 && (c.range = `bytes=${s}-`);
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- const a = await this.fetch(this.url, {
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- ...this.baseOverrides,
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- ...f,
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- headers: {
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- ...c,
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- ...f.headers,
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- ...this.baseOverrides.headers
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- },
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- method: "GET",
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- redirect: "follow",
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- mode: "cors",
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- signal: o
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- });
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- if (!a.ok)
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- throw new Error(`HTTP ${a.status} fetching ${this.url}`);
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- if (a.status === 200 && s === 0 || a.status === 206) {
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- const l = await this.getBufferFromResponse(a), g = l.copy(e, t, 0, Math.min(r, l.length)), w = a.headers.get("content-range"), h = /\/(\d+)$/.exec(w || "");
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- return h != null && h[1] && (this._stat = { size: parseInt(h[1], 10) }), { bytesRead: g, buffer: e };
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- }
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- throw a.status === 200 ? new Error(`${this.url} fetch returned status 200, expected 206`) : new Error(`HTTP ${a.status} fetching ${this.url}`);
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- }
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- async readFile(e = {}) {
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- let t, r;
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- typeof e == "string" ? (t = e, r = {}) : (t = e.encoding, r = e, delete r.encoding);
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- const { headers: s = {}, signal: i, overrides: c = {} } = r, o = await this.fetch(this.url, {
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- headers: s,
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- method: "GET",
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- redirect: "follow",
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- mode: "cors",
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- signal: i,
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- ...this.baseOverrides,
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- ...c
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- });
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- if (o.status !== 200)
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- throw new Error(`HTTP ${o.status} fetching ${this.url}`);
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- if (t === "utf8")
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- return o.text();
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- if (t)
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- throw new Error(`unsupported encoding: ${t}`);
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- return this.getBufferFromResponse(o);
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- }
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- async stat() {
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- if (!this._stat) {
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- const e = d.Buffer.allocUnsafe(10);
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- if (await this.read(e, 0, 10, 0), !this._stat)
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- throw new Error(`unable to determine size of file at ${this.url}`);
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- }
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- return this._stat;
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- }
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- async close() {
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- }
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- }
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- export {
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- $ as R
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- };