@genome-spy/core 0.41.0 → 0.42.0

package/dist/src/view/gridView.js

@@ -436,6 +436,8 @@ export default class GridView extends ContainerView {
      */
     // eslint-disable-next-line complexity
     render(context, coords, options = {}) {
+        super.render(context, coords, options);
+
         if (!this.isConfiguredVisible()) {
             return;
         }

package/dist/src/view/layerView.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"layerView.d.ts","sourceRoot":"","sources":["../../../src/view/layerView.js"],"names":[],"mappings":"AAIA;IAQI;;;;;;;;OAQG;IACH,kBAPW,OAAO,iBAAiB,EAAE,SAAS,WACnC,OAAO,yBAAyB,EAAE,OAAO,gBACzC,aAAa,cACb,OAAO,WAAW,EAAE,OAAO,QAC3B,MAAM,YACN,OAAO,WAAW,EAAE,WAAW,EAQzC;IAHG,0CAAgB;IAoCpB,gEAEC;IAWD;;;;OAIG;IACH,gBAJW,OAAO,4CAA4C,EAAE,OAAO,UAC5D,OAAO,uBAAuB,EAAE,OAAO,YACvC,OAAO,uBAAuB,EAAE,gBAAgB,QAc1D;;CAeJ;0BAxGyB,oBAAoB"}
+{"version":3,"file":"layerView.d.ts","sourceRoot":"","sources":["../../../src/view/layerView.js"],"names":[],"mappings":"AAIA;IAQI;;;;;;;;OAQG;IACH,kBAPW,OAAO,iBAAiB,EAAE,SAAS,WACnC,OAAO,yBAAyB,EAAE,OAAO,gBACzC,aAAa,cACb,OAAO,WAAW,EAAE,OAAO,QAC3B,MAAM,YACN,OAAO,WAAW,EAAE,WAAW,EAQzC;IAHG,0CAAgB;IAoCpB,gEAEC;IAWD;;;;OAIG;IACH,gBAJW,OAAO,4CAA4C,EAAE,OAAO,UAC5D,OAAO,uBAAuB,EAAE,OAAO,YACvC,OAAO,uBAAuB,EAAE,gBAAgB,QAgB1D;;CAeJ;0BA1GyB,oBAAoB"}

package/dist/src/view/layerView.js

@@ -77,6 +77,8 @@ export default class LayerView extends ContainerView {
      * @param {import("../types/rendering.js").RenderingOptions} [options]
      */
     render(context, coords, options = {}) {
+        super.render(context, coords, options);
+
         if (!this.isConfiguredVisible()) {
             return;
         }

package/dist/src/view/unitView.d.ts

@@ -28,12 +28,6 @@ export default class UnitView extends ContainerView {
     spec: import("../spec/view.js").UnitSpec;
     /** @type {import("../marks/mark.js").default} */
     mark: import("../marks/mark.js").default;
-    /**
-     * Not nice! Inconsistent when faceting!
-     * TODO: Something. Maybe store only width/height
-     * @type {import("./layout/rectangle.js").default}
-     */
-    coords: import("./layout/rectangle.js").default;
     /**
      * @param {import("./renderingContext/viewRenderingContext.js").default} context
      * @param {import("./layout/rectangle.js").default} coords

package/dist/src/view/unitView.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"unitView.d.ts","sourceRoot":"","sources":["../../../src/view/unitView.js"],"names":[],"mappings":"AAqBA;;;;GAIG;AACH;QAHkB,MAAM,GAAE,cAAc,kBAAkB,EAAE,OAAO;EASjE;AAEF;IACI;;;;;;;OAOG;IACH;;;;;;;;OAQG;IACH,kBAPW,OAAO,iBAAiB,EAAE,QAAQ,WAClC,OAAO,yBAAyB,EAAE,OAAO,gBACzC,OAAO,oBAAoB,EAAE,OAAO,cACpC,OAAO,WAAW,EAAE,OAAO,QAC3B,MAAM,YACN,OAAO,WAAW,EAAE,WAAW,EAyBzC;IApBG,yCAAgB;IAIZ,iDAAiD;IACjD,MADW,OAAO,kBAAkB,EAAE,OAAO,CACnB;IAO9B;;;;OAIG;IACH,QAFU,OAAO,uBAAuB,EAAE,OAAO,CAE1B;IAK3B;;;;OAIG;IACH,gBAJW,OAAO,4CAA4C,EAAE,OAAO,UAC5D,OAAO,uBAAuB,EAAE,OAAO,YACvC,OAAO,uBAAuB,EAAE,gBAAgB,QAY1D;IAED,kDAIC;IAED;;;;;OAKG;IACH,iEAyEC;IAED;;;OAGG;IACH,mGASC;IAkBD;;OAEG;IACH,uDAEC;IAED;;OAEG;IACH,opBAcC;IAED;;;;;OAKG;IACH,6BAHW,OAAO,oBAAoB,EAAE,gBAAgB,iDAkBvD;IAED;;;;;;;;;;;;OAYG;IACH,gHA2CC;IAED,uBAQC;IAgBD;;;;OAIG;IACH,8BAJW,MAAM,+DAEJ,OAAO,iBAAiB,EAAE,kBAAkB,CAKxD;CACJ;0BA1VyB,oBAAoB"}
+{"version":3,"file":"unitView.d.ts","sourceRoot":"","sources":["../../../src/view/unitView.js"],"names":[],"mappings":"AAqBA;;;;GAIG;AACH;QAHkB,MAAM,GAAE,cAAc,kBAAkB,EAAE,OAAO;EASjE;AAEF;IACI;;;;;;;OAOG;IACH;;;;;;;;OAQG;IACH,kBAPW,OAAO,iBAAiB,EAAE,QAAQ,WAClC,OAAO,yBAAyB,EAAE,OAAO,gBACzC,OAAO,oBAAoB,EAAE,OAAO,cACpC,OAAO,WAAW,EAAE,OAAO,QAC3B,MAAM,YACN,OAAO,WAAW,EAAE,WAAW,EAkBzC;IAbG,yCAAgB;IAIZ,iDAAiD;IACjD,MADW,OAAO,kBAAkB,EAAE,OAAO,CACnB;IAUlC;;;;OAIG;IACH,gBAJW,OAAO,4CAA4C,EAAE,OAAO,UAC5D,OAAO,uBAAuB,EAAE,OAAO,YACvC,OAAO,uBAAuB,EAAE,gBAAgB,QAY1D;IAED,kDAIC;IAED;;;;;OAKG;IACH,iEAyEC;IAED;;;OAGG;IACH,mGASC;IAkBD;;OAEG;IACH,uDAEC;IAED;;OAEG;IACH,opBAcC;IAED;;;;;OAKG;IACH,6BAHW,OAAO,oBAAoB,EAAE,gBAAgB,iDAkBvD;IAED;;;;;;;;;;;;OAYG;IACH,gHA2CC;IAED,uBAQC;IAgBD;;;;OAIG;IACH,8BAJW,MAAM,+DAEJ,OAAO,iBAAiB,EAAE,kBAAkB,CAKxD;CACJ;0BAnVyB,oBAAoB"}

package/dist/src/view/unitView.js

@@ -65,13 +65,6 @@ export default class UnitView extends ContainerView {
 
         this.resolve();
 
-        /**
-         * Not nice! Inconsistent when faceting!
-         * TODO: Something. Maybe store only width/height
-         * @type {import("./layout/rectangle.js").default}
-         */
-        this.coords = undefined;
-
         this.needsAxes = { x: true, y: true };
     }
 
@@ -81,12 +74,12 @@ export default class UnitView extends ContainerView {
      * @param {import("../types/rendering.js").RenderingOptions} [options]
      */
     render(context, coords, options = {}) {
+        super.render(context, coords, options);
+
         if (!this.isConfiguredVisible()) {
             return;
         }
 
-        this.coords = coords;
-
         context.pushView(this, coords);
         context.renderMark(this.mark, options);
         context.popView(this);

package/dist/src/view/view.d.ts

@@ -46,6 +46,12 @@ export default class View {
      * @type {function(number):number}
      */
     opacityFunction: (arg0: number) => number;
+    /**
+     * Not nice! Inconsistent when faceting!
+     * TODO: Something. Maybe store only width/height
+     * @type {import("./layout/rectangle.js").default}
+     */
+    coords: import("./layout/rectangle.js").default;
     context: import("../types/viewContext.js").default;
     layoutParent: import("./containerView.js").default;
     dataParent: View;

package/dist/src/view/view.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"view.d.ts","sourceRoot":"","sources":["../../../src/view/view.js"],"names":[],"mappings":"AAyBA,oBAAoB;AACpB,sCAAuC;AACvC,0BAA0B;AAC1B,sCAAuC;AAKvC;;;;;;;;;;;;;;;;;;;;;;;;;;;GA2BG;AACH;IAeI;;;;;;;;;OASG;IACH,kBARW,OAAO,iBAAiB,EAAE,QAAQ,WAClC,OAAO,yBAAyB,EAAE,OAAO,gBACzC,OAAO,oBAAoB,EAAE,OAAO,cACpC,OAAO,WAAW,EAAE,OAAO,QAC3B,MAAM,YACN,WAAW,EAwCrB;IApDD;;OAEG;IACH,wBAFmB,MAAM,KAAE,MAAM,CAEQ;IAiBrC,mDAAsB;IACtB,mDAAgC;IAChC,iBAA4B;IAC5B,aAA6B;IAC7B,yCAAgB;IAEhB;QACI;;;WAGG;eADO,QAAQ,OAAO,OAAO,oBAAoB,EAAE,gBAAgB,EAAE,OAAO,sBAAsB,EAAE,OAAO,CAAC,CAAC;QAGhH;;;WAGG;cADO,QAAQ,OAAO,OAAO,oBAAoB,EAAE,wBAAwB,EAAE,OAAO,qBAAqB,EAAE,OAAO,CAAC,CAAC;MAG1H;IAID;;;;kCAxDE,OAAO;;;;kCAEP,OAAO;MA0DR;IAED;;;OAGG;IACH,WAFU,OAAO,OAAO,oBAAoB,EAAE,wBAAwB,EAAE,OAAO,CAAC,CAEzC;IAG3C,sBAIC;IAED;;;;OAIG;IACH,eAFa,OAAO,CAInB;IAED;;;;;OAKG;IACH,gBAFa,OAAO,CAMnB;IAED;;;;;OAKG;IACH,WAFa,cAAc,CAW1B;IAED;;OAEG;IACH,mBAFa,cAAc,CAkB1B;IAoED,+BAEC;IAED,2BAEC;IAED;;;;;;;;OAQG;IACH,aAFa,OAAO,CAMnB;IAED;;;;;;;OAOG;IACH,uBAFa,MAAM,CAMlB;IAED,wBAKC;IAkBD;;OAEG;IACH,6BAEC;IAED;;OAEG;IACH,2BAEC;IAED;;;;OAIG;IACH,yBAFW,gBAAgB,QAO1B;IAED;;;;OAIG;IACH,2BAHW,MAAM,kBACG,gBAAgB,KAAE,IAAI,QASzC;IAED;;;;;;;OAOG;IACH,+BALW,OAAO,uBAAuB,EAAE,OAAO,SAEvC,OAAO,8BAA8B,EAAE,OAAO,aAC9C,OAAO,QASjB;IAED;;;;;;;;;;OAUG;IACH,kCAJW,MAAM,YACN,wBAAwB,eACxB,OAAO,QAajB;IAED;;;;;;;OAOG;IACH,eAJW,OAAO,GACL,WAAW,CAmBvB;IAED;;OAEG;IACH,yBAOC;IAED;;OAEG;IACH,6BASC;IAED;;;OAGG;IACH,uBAEC;IA7ZyB,yJAIN;IAqapB;;;;;;OAMG;IACH,eAFY,OAAO,oBAAoB,EAAE,QAAQ,CAuBhD;IAED;;;;OAIG;IACH,+BAJW,IAAI,UAEM,MAAM,KAAE,GAAG,CAM/B;IAED;;;;;OAKG;IACH,6BAHW,IAAI,GACF,MAAM,EAAE,CASpB;IAED;;;;;;;;;;;;;;;OAeG;IACH,yBAFY,YAAY,CAIvB;IAED;;OAEG;IACH,4BAFW,OAAO,oBAAoB,EAAE,gBAAgB,0CAWvD;IAED;;OAEG;IACH,2BAFW,OAAO,oBAAoB,EAAE,iBAAiB,yCAWxD;IAED;;;;OAIG;IACH,iCAJW,OAAO,oBAAoB,EAAE,OAAO,GAAG,SAAS,kBAChD,OAAO,iBAAiB,EAAE,gBAAgB,GACxC,OAAO,iBAAiB,EAAE,kBAAkB,CAIxD;IAED;;;;OAIG;IACH,0CAJW,OAAO,oBAAoB,EAAE,OAAO,kBACpC,OAAO,iBAAiB,EAAE,gBAAgB,GACxC,OAAO,iBAAiB,EAAE,kBAAkB,CAQxD;IAED;;;;OAIG;IACH,8BAJW,OAAO,oBAAoB,EAAE,OAAO,kBACpC,OAAO,iBAAiB,EAAE,gBAAgB,GACxC,OAAO,iBAAiB,EAAE,kBAAkB,CAIxD;IAED;;OAEG;IACH,cAFa,MAAM,CAOlB;IAED;;OAEG;IACH,8BAEC;IAED,uBAKC;IAED;;;;;;OAMG;IACH,yBANW,GAAG,wCAQb;IAED;;;;OAIG;IACH,8BAHW,MAAM,cACN,MAAM,GAAG,SAAS,GAAG,WAAW,QAiB1C;IAED,4BAEC;IAED;;;;;OAKG;IACH,iCAFW,OAAO,8BAA8B,EAAE,OAAO,QAIxD;;CACJ;AAqEM,iCAHI,GAAG,0CAGkC;0BAnsBnC,8BAAsB,IAAI;qCAG5B,IAAI,KACF,WAAW;sBAEX,eAAe,GAAG;IAC9B,SAAgB,CAAC,SAAW,IAAI,KAAE,IAAI,CAAC;IACvC,cAAqB,CAAC,SAAW,IAAI,KAAE,IAAI,CAAC;IAC5C,aAAoB,CAAC,SAAW,IAAI,KAAE,IAAI,CAAA;CAAC;;;;;UAIlC,OAAO,iBAAiB,EAAE,kBAAkB;;;;cAC5C,GAAG;;gDAGF,OAAO,uBAAuB,EAAE,OAAO,SAEvC,OAAO,8BAA8B,EAAE,OAAO;;;;;+BAG/C,OAAO;;;;+BAEP,OAAO;;oBArDG,qBAAqB;+BADlC,wBAAwB"}
+{"version":3,"file":"view.d.ts","sourceRoot":"","sources":["../../../src/view/view.js"],"names":[],"mappings":"AAyBA,oBAAoB;AACpB,sCAAuC;AACvC,0BAA0B;AAC1B,sCAAuC;AAKvC;;;;;;;;;;;;;;;;;;;;;;;;;;;GA2BG;AACH;IAsBI;;;;;;;;;OASG;IACH,kBARW,OAAO,iBAAiB,EAAE,QAAQ,WAClC,OAAO,yBAAyB,EAAE,OAAO,gBACzC,OAAO,oBAAoB,EAAE,OAAO,cACpC,OAAO,WAAW,EAAE,OAAO,QAC3B,MAAM,YACN,WAAW,EAwCrB;IA3DD;;OAEG;IACH,wBAFmB,MAAM,KAAE,MAAM,CAEQ;IAEzC;;;;OAIG;IACH,QAFU,OAAO,uBAAuB,EAAE,OAAO,CAE1C;IAiBH,mDAAsB;IACtB,mDAAgC;IAChC,iBAA4B;IAC5B,aAA6B;IAC7B,yCAAgB;IAEhB;QACI;;;WAGG;eADO,QAAQ,OAAO,OAAO,oBAAoB,EAAE,gBAAgB,EAAE,OAAO,sBAAsB,EAAE,OAAO,CAAC,CAAC;QAGhH;;;WAGG;cADO,QAAQ,OAAO,OAAO,oBAAoB,EAAE,wBAAwB,EAAE,OAAO,qBAAqB,EAAE,OAAO,CAAC,CAAC;MAG1H;IAID;;;;kCA/DE,OAAO;;;;kCAEP,OAAO;MAiER;IAED;;;OAGG;IACH,WAFU,OAAO,OAAO,oBAAoB,EAAE,wBAAwB,EAAE,OAAO,CAAC,CAEzC;IAG3C,sBAIC;IAED;;;;OAIG;IACH,eAFa,OAAO,CAInB;IAED;;;;;OAKG;IACH,gBAFa,OAAO,CAMnB;IAED;;;;;OAKG;IACH,WAFa,cAAc,CAW1B;IAED;;OAEG;IACH,mBAFa,cAAc,CAkB1B;IAoED,+BAEC;IAED,2BAEC;IAED;;;;;;;;OAQG;IACH,aAFa,OAAO,CAMnB;IAED;;;;;;;OAOG;IACH,uBAFa,MAAM,CAMlB;IAED,wBAKC;IAkBD;;OAEG;IACH,6BAEC;IAED;;OAEG;IACH,2BAEC;IAED;;;;OAIG;IACH,yBAFW,gBAAgB,QAO1B;IAED;;;;OAIG;IACH,2BAHW,MAAM,kBACG,gBAAgB,KAAE,IAAI,QASzC;IAED;;;;;;;OAOG;IACH,+BALW,OAAO,uBAAuB,EAAE,OAAO,SAEvC,OAAO,8BAA8B,EAAE,OAAO,aAC9C,OAAO,QASjB;IAED;;;;;;;;;;OAUG;IACH,kCAJW,MAAM,YACN,wBAAwB,eACxB,OAAO,QAajB;IAED;;;;;;;OAOG;IACH,eAJW,OAAO,GACL,WAAW,CAmBvB;IAED;;OAEG;IACH,yBAOC;IAED;;OAEG;IACH,6BASC;IAED;;;OAGG;IACH,uBAEC;IApayB,yJAIN;IAgbpB;;;;;;OAMG;IACH,eAFY,OAAO,oBAAoB,EAAE,QAAQ,CAuBhD;IAED;;;;OAIG;IACH,+BAJW,IAAI,UAEM,MAAM,KAAE,GAAG,CAM/B;IAED;;;;;OAKG;IACH,6BAHW,IAAI,GACF,MAAM,EAAE,CASpB;IAED;;;;;;;;;;;;;;;OAeG;IACH,yBAFY,YAAY,CAIvB;IAED;;OAEG;IACH,4BAFW,OAAO,oBAAoB,EAAE,gBAAgB,0CAWvD;IAED;;OAEG;IACH,2BAFW,OAAO,oBAAoB,EAAE,iBAAiB,yCAWxD;IAED;;;;OAIG;IACH,iCAJW,OAAO,oBAAoB,EAAE,OAAO,GAAG,SAAS,kBAChD,OAAO,iBAAiB,EAAE,gBAAgB,GACxC,OAAO,iBAAiB,EAAE,kBAAkB,CAIxD;IAED;;;;OAIG;IACH,0CAJW,OAAO,oBAAoB,EAAE,OAAO,kBACpC,OAAO,iBAAiB,EAAE,gBAAgB,GACxC,OAAO,iBAAiB,EAAE,kBAAkB,CAQxD;IAED;;;;OAIG;IACH,8BAJW,OAAO,oBAAoB,EAAE,OAAO,kBACpC,OAAO,iBAAiB,EAAE,gBAAgB,GACxC,OAAO,iBAAiB,EAAE,kBAAkB,CAIxD;IAED;;OAEG;IACH,cAFa,MAAM,CAOlB;IAED;;OAEG;IACH,8BAEC;IAED,uBAKC;IAED;;;;;;OAMG;IACH,yBANW,GAAG,wCAQb;IAED;;;;OAIG;IACH,8BAHW,MAAM,cACN,MAAM,GAAG,SAAS,GAAG,WAAW,QAiB1C;IAED,4BAEC;IAED;;;;;OAKG;IACH,iCAFW,OAAO,8BAA8B,EAAE,OAAO,QAIxD;;CACJ;AAqEM,iCAHI,GAAG,0CAGkC;0BA9sBnC,8BAAsB,IAAI;qCAG5B,IAAI,KACF,WAAW;sBAEX,eAAe,GAAG;IAC9B,SAAgB,CAAC,SAAW,IAAI,KAAE,IAAI,CAAC;IACvC,cAAqB,CAAC,SAAW,IAAI,KAAE,IAAI,CAAC;IAC5C,aAAoB,CAAC,SAAW,IAAI,KAAE,IAAI,CAAA;CAAC;;;;;UAIlC,OAAO,iBAAiB,EAAE,kBAAkB;;;;cAC5C,GAAG;;gDAGF,OAAO,uBAAuB,EAAE,OAAO,SAEvC,OAAO,8BAA8B,EAAE,OAAO;;;;;+BAG/C,OAAO;;;;+BAEP,OAAO;;oBArDG,qBAAqB;+BADlC,wBAAwB"}

package/dist/src/view/view.js

@@ -74,6 +74,13 @@ export default class View {
      */
     opacityFunction = defaultOpacityFunction;
 
+    /**
+     * Not nice! Inconsistent when faceting!
+     * TODO: Something. Maybe store only width/height
+     * @type {import("./layout/rectangle.js").default}
+     */
+    coords;
+
     /**
      *
      * @param {import("../spec/view.js").ViewSpec} spec
@@ -462,6 +469,10 @@ export default class View {
      * @type {import("../types/rendering.js").RenderMethod}
      */
     render(context, coords, options = {}) {
+        this.coords = options.clipRect
+            ? coords.intersect(options.clipRect)
+            : coords;
+
         // override
     }
 

package/package.json

@@ -7,7 +7,7 @@
   },
   "contributors": [],
   "license": "MIT",
-  "version": "0.41.0",
+  "version": "0.42.0",
   "jsdelivr": "dist/bundle/index.js",
   "unpkg": "dist/bundle/index.js",
   "browser": "dist/bundle/index.js",
@@ -42,7 +42,7 @@
     "@gmod/bgzf-filehandle": "^1.4.7",
     "@gmod/gff": "^1.3.0",
     "@gmod/indexedfasta": "^2.0.4",
-    "@gmod/tabix": "^1.5.10",
+    "@gmod/tabix": "^1.5.13",
     "@types/d3-array": "^3.0.2",
     "@types/d3-dsv": "^3.0.0",
     "@types/d3-ease": "^3.0.0",
@@ -65,5 +65,5 @@
     "vega-scale": "^7.1.1",
     "vega-util": "^1.16.0"
   },
-  "gitHead": "b9e91be6b770d888429a3dc970c6468f776c76d4"
+  "gitHead": "59a4384ba903ee1b81212593e872ea61accc729d"
 }